sp|Q38859|NRPBB_ARATH ----> DNA-directed RNA polymerases II, IV and V subunit 11

Intron 1 GTAGTTTTTA ... ATGCTCACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	41.29	116.6	82	1
A2	41.01	128	89	3
A3	40.96	118.2	82	6
A4	34.56	109.8	58	1
A5	41.88	68	49	1
A6	43.37	749.2	573.8	15
A7	42.72	659	491.4	9
A8	42.78	814	608.6	18
A9	42.55	847.8	627.8	16
A10	42.59	594.6	441.2	8

>TRINITY_DN45812_c0_g2_i8 from sample A7 / Example spliced isoform

CTGACATATAAATTCCACACTTGGCTCAAGAAATCACCTCTTGAAACTCTGATTTCTTCTATTCGAGACAAGGCGACGGAAATCAATCTTTCTCATCTTCAGATCACCCTTCACTCTTTCTATACCTGCACTACCAGGTCACCATGAATGCCCCAGATCGATATGAGAAGTTTGTGGTGCCCGAGGGCACTAAAAAAGTG
TCCTATGAACGGGACATGAAGATTATGAATGCTGCAACCTTCGTCATCGAAAGAGAAGACCACACAATTGGCAATCTTGTTCGCATGCAACTGCACAGGGATCCAAATGTGCTATTTGCTGGCTACAAACTGCCACATCCGTTGCAGTACAAGATTCTTCTCAGGATTCAAACCACAAGCCAGTCTTCTCCAATGCAGGC
TTACAACTTGGCAATTGATGACCTCGACAAAGAGCTCGATCTTATGAAAAGATCTTTTGAGTCCATTACATTAGTACTTGCACGACAACCGATGCTTACAGATCATTACATTGGATGAATTAGTGCGAGTTCAACCAGAAAACGG

>TRINITY_DN45812_c0_g2_i2 from sample A7 / Example unspliced isoform:

CTGACATATAAATTCCACACTTGGCTCAAGAAATCACCTCTTGAAACTCTGATTTCTTCTATTCGAGACAAGGCGACGGAAATCAATCTTTCTCATCTTCAGATCACCCTTCACTCTTTCTATACCTGCACTACCAGGTCACCATGAATGCCCCAGATCGATATGAGAAGTTTGTGGTGCCCGAGGGCACTAAAAAAGTG
TCCTATGAACGGGACATGAAGATTATGAATGCTGCAACCTTCGTCATCGAAAGAGAAGACCACACAATTGGCAATCTTGTTCGCATGCAACTGCACAGGGATCCAAATGTGCTATTTGCTGGCTACAAACTGCCACATCCGTTGCAGTACAAGATTCTTCTCAGGATTCAAACCACAAGCCAGTCTTCTCCAATGCAGGC
TTACAACTTGGCAATTGATGACCTCGACAAAGAGCTCGATCTTATGAAAAGATCTTTTGAGgtagtttttatttcctctcttctctttgtattatctctattgcactttacagcaggtgactgctgaatggttacttaacctagatacttgtttagcatcacctgtttgttactgttttactagtacttacatcataact
gatgctcacagTCCATTACATTAGTACTTGCACGACAACCGATGCTTACAGATCATTACATTGGTAAGAACTACAGAAATAATAATCTGATTGCTTCAGAGATCAGAGGAGGATTATCTACTGAAACATTAGTAAAGGCCATCTCCCTAAAGCAGTAATATGGAACCCATGTGAACAAATGGTCCTGTTCTTAGACTCAA
ATATTTGCTGTTAATGCTACAAGGTAGTGGCAAAAAGTAGGAAAAAGCTTAGGCTTTATACAAGGTATACTAGACTTCTGTAGTATTGGATTTAGTATCTATTCTCAAATTTTCAGACTTAAATGCTATTAGACTTCATTTTAGCATCTTTTTTTGGAAATTGGGAACTTCTTTAAAACTGAATTTGGGCATTTTATAGT
CTTAATATCTGGGTACCTCGAGACTGAGAAGAAAAGGCTACATCCTGGAAGCTCGCTAGATTTTTTACATAACAGATGGAAGATGACAGAGTTTTTGATTTACGATAAATTTTTTGCTTTTCTCTAGTTTCTTAGCAGATGTGTTTTGAATTTTGGATGTTGGACTGATGGCATATGTGTTGCAAGTTTATGTACAAGTG
AGCCAACCAAAAGTATATTATTCTGTGCAGAGGCTAATCAGCCTATGCAGGGCTTTGCTTTCTTATTCATATTTTATCTATGTTTTAACTCTCTTTCCTATGGAGAGTCTCTTATGGCACAAAGCATTATATCCCTTTCTCCTGCTATAA

Intron 2 GTAAAGAAGG ... CCTCTGGAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	19.94	251	88	37
A2	19.22	269	100	28
A3	17.96	297	97	33
A4	20.97	179	73	22
A5	14.22	175	46	12
A6	17.98	2260	635	356
A7	16.75	2159	541	328
A8	17.51	2683	671	468
A9	16.81	2516	692	325
A10	17.18	1632	487	190

>TRINITY_DN45812_c0_g2_i3 from sample A7 / Example spliced isoform

CTGACATATAAATTCCACACTTGGCTCAAGAAATCACCTCTTGAAACTCTGATTTCTTCTATTCGAGACAAGGCGACGGAAATCAATCTTTCTCATCTTCAGATCACCCTTCACTCTTTCTATACCTGCACTACCAGGTCACCATGAATGCCCCAGATCGATATGAGAAGTTTGTGGTGCCCGAGGGCACTAAAAAAGTG
TCCTATGAACGGGACATGAAGATTATGAATGCTGCAACCTTCGTCATCGAAAGAGAAGACCACACAATTGGCAATCTTGTTCGCATGCAACTGCACAGGGATCCAAATGTGCTATTTGCTGGCTACAAACTGCCACATCCGTTGCAGTACAAGATTCTTCTCAGGATTCAAACCACAAGCCAGTCTTCTCCAATGCAGGC
TTACAACTTGGCAATTGATGACCTCGACAAAGAGCTCGATCTTATGAAAAGATCTTTTGAGGATGAATTGGTGCGAGTTCAACCAGAAAACGGAGAAGGTTTATAGAAAACAGTTCCTCTTTCTGACTGAAGAGTGTCTTGAACGAGTGTGTTGCAGATTAGGAGAAACAGTAATACACTATAATGGATTTCTGTCTGAT
CTGAAATATTTGCCTCTATTTTTGGAGTTTTGATAAGTATATTTTCAGTGTCGGTAAAATAGTCTTGTGAATTTTGAATTGAAGCATACATCATAAATGAATGATTCAATTTTGCATCACTCCCACCACAATCATAATCGATATACTGGGTTAAAATTTCCTTTTTGAGCAGCTTTTATTACTATAGTTAGTTTATAATA
CATACGAATTGGTTATTGGTCAACTGTGAATGTGCTATTGAATATTTCATTACAGAAATGTTTTAAT

>TRINITY_DN45812_c0_g2_i6 from sample A7 / Example unspliced isoform:

CTGACATATAAATTCCACACTTGGCTCAAGAAATCACCTCTTGAAACTCTGATTTCTTCTATTCGAGACAAGGCGACGGAAATCAATCTTTCTCATCTTCAGATCACCCTTCACTCTTTCTATACCTGCACTACCAGGTCACCATGAATGCCCCAGATCGATATGAGAAGTTTGTGGTGCCCGAGGGCACTAAAAAAGTG
TCCTATGAACGGGACATGAAGATTATGAATGCTGCAACCTTCGTCATCGAAAGAGAAGACCACACAATTGGCAATCTTGTTCGCATGCAACTGCACAGGGATCCAAATGTGCTATTTGCTGGCTACAAACTGCCACATCCGTTGCAGTACAAGATTCTTCTCAGGATTCAAACCACAAGCCAGTCTTCTCCAATGCAGGC
TTACAACTTGGCAATTGATGACCTCGACAAAGAGCTCGATCTTATGAAAAGATCTTTTGAGgtaaagaaggattttgttggcgaaacttttctgtctcccaagatgcatcttcctctggaagGATGAATTGGTGCGAGTTCAACCAGAAAACGGAGAAGGTTTATAGAAAACAGTTCCTCTTTCTGACTGAAGAGTGTCT
TGAACGAGTGTGTTGCAGATTAGGAGAAACAGTAATACACTATAATGGATTTCTGTCTGATCTGAAATATTTGCCTCTATTTTTGGAGTTTTGATAAGTATATTTTCAGTGTCGGTAAAATAGTCTTGTGAATTTTGAATTGAAGCATACATCATAAATGAATGATTCAATTTTGCATCACTCCCACCACAATCATAATC
GATATACTGGGTTAAAATTTCCTTTTTGAGCAGCTTTTATTACTATAGTTAGTTTATAATACATACGAATTGGTTATTGGTCAACTGTGAATGTGCTATTGAATATTTCATTACAGAAATGTTTTAAT