sp|A2XCJ1|U496C_ORYSI ----> UPF0496 protein 3
Intron 1 GTAGGACGCC ... CTTTGCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75 | 2 | 5 | 7 |
| A2 | 100 | 0 | 3 | 8 |
| A3 | 57.89 | 4 | 9 | 2 |
| A4 | 100 | 0 | 0 | 1 |
| A5 | 100 | 0 | 0 | 4 |
| A6 | 70 | 3 | 6 | 8 |
| A7 | 48.15 | 7 | 8 | 5 |
| A8 | 51.11 | 11 | 15 | 8 |
| A9 | 57.45 | 10 | 17 | 10 |
| A10 | 82.61 | 2 | 14 | 5 |
>TRINITY_DN38593_c0_g1_i1 from sample A9 / Example spliced isoformGGAAGAAAGCCGAATTACAGACAAAAGAATCGTGTACAACATGTTATTTGAGATGTAAATCTTAATAAGAAACGCAACGCGTACAGGACAGCACAACACGCGCCGGGATGGGAAGAGTAAAGCATATGGAACAGTCAGTATTCTTCATGACGGTAGAGAAGGAAGCTTGACAATCAATCCGGAAGGAATTTGCATATAAA
ATCAATCTTTATGCAGAAAAAATCAAACGAATAGAGAAGATTACGTAAAACGATCTGGCTTCCGTAATAAGGACAAAACGTCGGTGGCAAAGGACAAGCTTCCGGACCTCGTCTTCTCAAGAAGGCCATATTAAAGATTGCAAGGGCTCAGTTCCATTAAAGATAGCATCAACTTATTCAATCATATATTCGAAAGGCTG
TGGCCGAGGGCATAAGAGTCGAGCCTAATCAGGATATTTTAAATTTGTCAACAGAAAGCGACAAGCTTGTCAATTTCTTGGCGTTTTCATCTTCTAAATCGGAGAACTGGTGTAAGCCAATACAAAGAGATGTGTTTGAAGTTTAAATCTTTGAGGAAAACGTTCAACCAGCAAACTGCGTCTGAAGAAACGAGGCCAAG
GACACGCAGCGAAGCGCATCTTGTGCACAGCGGTAGCCTGAATCTAAACGATGAGTATGCCAAAGCTTTCAGGACTCAATCTTACGCCGAAATATGGAAACAAGCTCGGCGCGTCAGTAACGACCAAGAACAAGAAATAGGTGAGACATCGGCGTCTCCTTTCCACCGGTACGGGGTTTTGGCAGAACATATTCTTGAAC
CTGACCAGGAAGCCGTGAAAGATATTCTTCAGCAAGGGCTTCTGTCAAGCGTACCGGAATTATATGATTTGGTTTCAGATTACTTCAATAACAGCGCGGAGGCCTCTAAACTGTGCGGCGATCTCCTTAAGAATATCCAGCAGGCGAAGGCAAGCTATCGTTGTGTAAAGAACGTCCTGGATTGCACACCTTCCACGGGA
GACTTAACCAGCGAGCAATGTCATTTCACGATTGCGGAGTTCCTTATGTTTATGAAAGTGGGCAATCCTTTTGCCGATCCAACGTCCCAGAATTTCCAGAACATTCACGAGAGTTACTCATCTTTGCTTAAACAGCTGGATCTAAACCAGAAAAGGGTAATGAAAAAGCTAAAATTGCTCAGCGGATGCAAGAAAGCTTC
CGTGGTTTGGATTATCGCGGCTTCTACTGCAATCGCCATCTGTGCGGTTGTAATAGCCTCGCATGCTCTGATTGCCATTGTTGCCGGCCCGGTCGTGCTGACATTTCCTTCCAATTGCGTAAAGCATCGGATGAAATCCCTCCGGACCAGTGTTCTTGCACGCCAGAGGACACAGCTTGACGCCGCGGCAAGGGGGACGT
ACCTTCTGAACCGGGACTTCGACACGATAAGTTGTCTTGTGACGCGGTTGCACGATGAGGTTGAACACAACAAAGTAATAATTAACTTTTGCTTGGACAGGAAGGATGAGATCCAGCCCGTCCAGATGGTCGTAAGCCAGCTCAGAAGCAATGACCCGAAATTCAATCAACAGCTGGACGAGCTAGAAGAACGCGTGTAC
CTCTGCTTCCTGACTATCAACAGAGCAAGAAGCATGGTTGTTCAAGAAATCCAGCTGCAACAGCCTCTTCCTTGACGCCAGAGATTTTGGTGACGTGTGCCAAGAAAGTTCGAGAATCCTCGCATTCGATCGAACCAGGTGGACGTCTCTTTGAGTCGTGACTGTTCTACAGTTACTTGCCACTTGAGGTTTTACCAATG
ATATGGTTTTGGTGAAACTTTAACATTATTTATTTAGGAGAATTGCTTTATTTATCCACCATAAAATTGAGTGACCATCAAAGAAGGATGGTACCACACGTAATTTTGTATGGCTATAATGTTTGATCCGAACCCCTTTACCGATGACTTTACTGAATTTAGCGGATTTTAATCAATTTAGCGGCCAATAAAGAATCTCT
GAATGGTGCCTTATGTATTATATTTAATATTTTATTGCTGTAAAGTTTAGTCCAAGTCCC
>TRINITY_DN38593_c0_g1_i2 from sample A9 / Example unspliced isoform:GGAAGAAAGCCGAATTACAGACAAAAGAATCGTGTACAACATGTTATTTGAGATGTAAATCTTAATAAGAAACGCAACGCGTACAGGACAGCACAACACGCGCCGGGATGGGAAGAGTAAAGCATATGGAACAGTCAGTATTCTTCATGACGGTAGAGAAGGAAGCTTGACAATCAATCCGGAAGGAATTTGCATATAAA
ATCAATCTTTATGCAGAAAAAATCAAACGAATAGAGAAGATTACGTAAAACGATCTGGCTTCCGTAATAAGGACAAAACGTCGGTGGCAAAGGACAAGCTTCCGGACCTCGTCTTCTCAAGAAGGCCATATTAAAGATTGCAAGGGCTCAGTTCCATTAAAGATAGCATCAACTTATTCAATCATATATTCGAAAGGCTG
TGGCCGAGGGCATAAGAGTCGAGCCTAATCAGGATATTTTAAATTTGTCAACAGAAAGCGACAAGCTTGTCAATTTCTTGGCGTTTTCATCTTCTAAATCGGAGAACTGGTGTAAGCCAATACAAAGAGATGTGTTTGAAGTTTAAATCTTTGAGGAAAACGTTCAACCAGCAAACTGCGTCTGAAGAAACGAGGCCAAG
GACACGCAGCGAAGCGCATCTTGTGCACAGCGGTAGCCTGAATCTAAACGATGAGTATGCCAAAGCTTTCAGGACTCAATCTTACGCCGAAATATGGAAACAAGCTCGGCGCGTCAGTAACGACCAAGAACAAGAAATAGGTGAGACATCGGCGTCTCCTTTCCACCGGTACGGGGTTTTGGCAGAACATATTCTTGAAC
CTGACCAGGAAGCCGTGAAAGATATTCTTCAGCAAGGGCTTCTGTCAAGCGTACCGGAATTATATGATTTGGTTTCAGATTACTTCAATAACAGCGCGGAGGCCTCTAAACTGTGCGGCGATCTCCTTAAGAATATCCAGCAGGCGAAGGCAAGCTATCGTTGTGTAAAGAACGTCCTGGATTGCACACCTTCCACGGGA
GACTTAACCAGCGAGCAATGTCATTTCACGATTGCGGAGTTCCTTATGTTTATGAAAGTGGGCAATCCTTTTGCCGATCCAACGTCCCAGAATTTCCAGAACATTCACGAGAGTTACTCATCTTTGCTTAAACAGCTGGATCTAAACCAGAAAAGGGTAATGAAAAAGCTAAAATTGCTCAGCGGATGCAAGAAAGCTTC
CGTGGTTTGGATTATCGCGGCTTCTACTGCAATCGCCATCTGTGCGGTTGTAATAGCCTCGCATGCTCTGATTGCCATTGTTGCCGGCCCGGTCGTGCTGACATTTCCTTCCAATTGCGTAAAGCATCGGATGAAATCCCTCCGGACCAGTGTTCTTGCACGCCAGAGGACACAGCTTGACGCCGCGGCAAGGGGGACGT
ACCTTCTGAACCGGGACTTCGACACGATAAGTTGTCTTGTGACGCGGTTGCACGATGAGGTTGAACACAACAAAGTAATAATTAACTTTTGCTTGGACAGGAAGGATGAGATCCAGCCCGTCCAGATGGTCGTAAGCCAGCTCAGAAGCAATGACCCGAAATTCAATCAACAGCTGGACGAGCTAGAAGAACGCGTGTAC
CTCTGCTTCCTGACTATCAACAGAGCAAGAAGCATGGTTGTTCAAGAAATCCAGCTGCAACAGCCTCTTCCTTGACGCCAGgtaggacgccaccgtggccgatccacaaccatgaataagcagctctgcagctcaagattcgtcgctgcatatagctgcccggctcattgaatttgatattgagtaattttattcaaaat
ccgataattgctgattagcaatacccataatctcaaaacatcgatttcataatattatcatattgtatctttgcccagAGATTTTGGTGACGTGTGCCAAGAAAGTTCGAGAATCCTCGCATTCGATCGAACCAGGTGGACGTCTCTTTGAGTCGTGACTGTTCTACAGTTACTTGCCACTTGAGGTTTTACCAATGATA
TGGTTTTGGTGAAACTTTAACATTATTTATTTAGGAGAATTGCTTTATTTATCCACCATAAAATTGAGTGACCATCAAAGAAGGATGGTACCACACGTAATTTTGTATGGCTATAATGTTTGATCCGAACCCCTTTACCGATGACTTTACTGAATTTAGCGGATTTTAATCAATTTAGCGGCCAATAAAGAATCTCTGAA
TGGTGCCTTATGTATTATATTTAATATTTTATTGCTGTAAAGTTTAGTCCAAGTCCC
Intron 2 GCCATATTAA ... TTGTCAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 77.78 | 2 | 11 | 3 |
| A2 | 71.43 | 1 | 3 | 2 |
| A3 | 80 | 1 | 6 | 2 |
| A4 | 50 | 3 | 1 | 5 |
| A5 | 100 | 0 | 1 | 2 |
| A6 | 50 | 3 | 3 | 3 |
| A7 | 57.14 | 12 | 15 | 17 |
| A8 | 50 | 5 | 4 | 6 |
| A9 | 100 | 0 | 3 | 0 |
| A10 | 60 | 2 | 0 | 6 |
>TRINITY_DN42112_c0_g1_i3 from sample A7 / Example spliced isoformGGACAGCACAACACGCGCCGGGATGGGAAGAGTAAAGCATATGGAACAGTCAGTATTCTTCATGACGGTAGAGAAGGAAGCTTGACAATCAATCCGGAAGGAATTTGCATATAAAATCAATCTTTATGCAGAAAAAATCAAACGAATAGAGAAGATTACGTAAAACGATCTGGCTTCCGTAATAAGGACAAAACGTCGGT
GGCAAAGGACAAGCTTCCGGACCTCGTCTTCTCAAGAAGAAAGCGACAAGCTTGTCAATTTCTTGGCGTTTTCATCTTCTAAATCGGAGAACTGGTGTAAGCCAATACAAAGAGATGTGTTTGAAGTTTAAATCTTTGAGGAAAACGTTCAACCGGCAAACTGCGTCTGAAGAAACGAGGCCAAGGATACGCAGCGAAGC
GCATCTTGTGCACAGCGGTAGCCTGAATCTAAACGATGAGTATGCCAAAGCTTTCAGGACTCAATCTTACGCCGAAATATGGAAACAAGCTCGGCGCGTCAGTAACGACCAAGAACAAGAAATAGGTGAGACATCGGCGTCTCCTTTCCACCGGTACGGGGTTTTGGCAGAACATATTCTTGAACCTGACCAGGAAGCCG
TGAAAGATATTCTTCAGCAAGGGCTTCTGTCAAGCGTACCGGAATTATATGATTTGGTTTCAGATTACTTCAATAACAGCGCGGAGGCCTCTAAACTGTGCGGCGATCTCCTTAAGAATATCCAGCAGGCGAAGGCAAGCTATCGTTGTGTAAGGAACGTCCTGGATTGCACACCTTCCACGGGAGACTTAACCAGCGAG
CAATGTCATTTCACGATTGCGGAGTTCCTTATGTTTATGAAAGTGGGCAATCCTTTTGCCGATCCAACGTCCCAGAATTTCCAGAACATTCACGAGAGTTACTCATCTTTGCTTAAACAGCTGGATCTAAACCAGAAAAGGGTAATGAAAAAGCTAAAATTGCTCAGCGGATGCAAGAAAGCTTCCGTGGTTTGGATTAT
CGCGGCTTCTACTGCAATCGCCATCTGTGCGGTTGTAATAGCCTCGCATGCTCTGATTGCCATTGTTGCCGGCCCGGTCGTGCTGACATTTCCTTCCAATTGCGTAAAGCATCGGATGAAATCCCTCCGGACCAGTGTTCTTGCACGCCAGAGGACACAGCTTGACGCCGCGGCAAGGGGGACGTACCTTCTGAACCGGG
ACTTCGACACGATAAGTTGTCTTGTGACGCGGTTGCACGATGAGGTTGAACACAACAAAGTAATAATTAACTTTTGCTTGGACAGGAAGGATGAGATCCAGCCCGTCCAGATGGTCGTAAGCCAGCTCAGAAGCAATGACCCGAAATTCAATCAACAGCTGGACGAGCTAGAAGAACGCGTGTACCTCTGCTTCCTGACT
ATCAACAGAGCAAGAAGCATGGTTGTTCAAGAAATCCAGCTGCAACAGCCTCTTCCTTGACGCCAGGTAGGACGCCACCGTGGCCGATTCACAACCATGAATAAGCAGCTCTGCAGCTCAAGATTCGTCGCTGCATATAGCTGCCCGGCTCATTGAATTTGATATTGAGTAATTTTATTCAAAATCCGATAATTGCTGAT
TAGCAATACCCATAATCTCAAAACATCGATTTCATAATATTATCATATTGTATCTTTGCCCAGAGATTTTGGTGACGTGTGCCAAGAAAGTTCGAGAATCCTCGCATTCGATCGAACCAGGTGGACGTCTCTTTGAGTCGTGACTGTTCTACAGTTACTTGCCACTTGAGGTTTTACCAATGATATGGTTTTGGTGAAAC
TTTAACATTATTTATTTAGGAGAATTGCTTTATTTATCCACCATAAAATTTAGTGACCATCAAAGAAGGATGGTACCACACGTAATTTTGTATGGCTATAATGTTTGATCCGAACCCCTTTACCGATGACTTTACTGAATTTAGCGGATTTTAATCAATTTAGCGGCCAATAAAGAATCTCTGAATGGTGCCTTATGTAT
TATATTTAATATTTTATTGCTGTAAAGCTTATTCCTAGTCCTTATATTTAATATTTTATTTCATGTTTGACAGGAATCCCTTTTATTTGAGTACGAAAGCTAAAACGTAAGATATACATATTATATAAAAC
>TRINITY_DN42112_c0_g1_i1 from sample A7 / Example unspliced isoform:GGACAGCACAACACGCGCCGGGATGGGAAGAGTAAAGCATATGGAACAGTCAGTATTCTTCATGACGGTAGAGAAGGAAGCTTGACAATCAATCCGGAAGGAATTTGCATATAAAATCAATCTTTATGCAGAAAAAATCAAACGAATAGAGAAGATTACGTAAAACGATCTGGCTTCCGTAATAAGGACAAAACGTCGGT
GGCAAAGGACAAGCTTCCGGACCTCGTCTTCTCAAGAAGgccatattaaagattgcaagggctcagttccattaaagatagcatcaacttattcaatcatatattcgaaaggctgtggccgagggcataagagtcgagcctaatcaggatattttaaatttgtcaacagAAAGCGACAAGCTTGTCAATTTCTTGGCGTT
TTCATCTTCTAAATCGGAGAACTGGTGTAAGCCAATACAAAGAGATGTGTTTGAAGTTTAAATCTTTGAGGAAAACGTTCAACCGGCAAACTGCGTCTGAAGAAACGAGGCCAAGGATACGCAGCGAAGCGCATCTTGTGCACAGCGGTAGCCTGAATCTAAACGATGAGTATGCCAAAGCTTTCAGGACTCAATCTTAC
GCCGAAATATGGAAACAAGCTCGGCGCGTCAGTAACGACCAAGAACAAGAAATAGGTGAGACATCGGCGTCTCCTTTCCACCGGTACGGGGTTTTGGCAGAACATATTCTTGAACCTGACCAGGAAGCCGTGAAAGATATTCTTCAGCAAGGGCTTCTGTCAAGCGTACCGGAATTATATGATTTGGTTTCAGATTACTT
CAATAACAGCGCGGAGGCCTCTAAACTGTGCGGCGATCTCCTTAAGAATATCCAGCAGGCGAAGGCAAGCTATCGTTGTGTAAGGAACGTCCTGGATTGCACACCTTCCACGGGAGACTTAACCAGCGAGCAATGTCATTTCACGATTGCGGAGTTCCTTATGTTTATGAAAGTGGGCAATCCTTTTGCCGATCCAACGT
CCCAGAATTTCCAGAACATTCACGAGAGTTACTCATCTTTGCTTAAACAGCTGGATCTAAACCAGAAAAGGGTAATGAAAAAGCTAAAATTGCTCAGCGGATGCAAGAAAGCTTCCGTGGTTTGGATTATCGCGGCTTCTACTGCAATCGCCATCTGTGCGGTTGTAATAGCCTCGCATGCTCTGATTGCCATTGTTGCC
GGCCCGGTCGTGCTGACATTTCCTTCCAATTGCGTAAAGCATCGGATGAAATCCCTCCGGACCAGTGTTCTTGCACGCCAGAGGACACAGCTTGACGCCGCGGCAAGGGGGACGTACCTTCTGAACCGGGACTTCGACACGATAAGTTGTCTTGTGACGCGGTTGCACGATGAGGTTGAACACAACAAAGTAATAATTAA
CTTTTGCTTGGACAGGAAGGATGAGATCCAGCCCGTCCAGATGGTCGTAAGCCAGCTCAGAAGCAATGACCCGAAATTCAATCAACAGCTGGACGAGCTAGAAGAACGCGTGTACCTCTGCTTCCTGACTATCAACAGAGCAAGAAGCATGGTTGTTCAAGAAATCCAGCTGCAACAGCCTCTTCCTTGACGCCAGGTAG
GACGCCACCGTGGCCGATTCACAACCATGAATAAGCAGCTCTGCAGCTCAAGATTCGTCGCTGCATATAGCTGCCCGGCTCATTGAATTTGATATTGAGTAATTTTATTCAAAATCCGATAATTGCTGATTAGCAATACCCATAATCTCAAAACATCGATTTCATAATATTATCATATTGTATCTTTGCCCAGAGATTTT
GGTGACGTGTGCCAAGAAAGTTCGAGAATCCTCGCATTCGATCGAACCAGGTGGACGTCTCTTTGAGTCGTGACTGTTCTACAGTTACTTGCCACTTGAGGTTTTACCAATGATATGGTTTTGGTGAAACTTTAACATTATTTATTTAGGAGAATTGCTTTATTTATCCACCATAAAATTTAGTGACCATCAAAGAAGGA
TGGTACCACACGTAATTTTGTATGGCTATAATGTTTGATCCGAACCCCTTTACCGATGACTTTACTGAATTTAGCGGATTTTAATCAATTTAGCGGCCAATAAAGAATCTCTGAATGGTGCCTTATGTATTATATTTAATATTTTATTGCTGTAAAGCTTATTCCTAGTCCTTATATTTAATATTTTATTTCATGTTTGA
CAGGAATCCCTTTTATTTGAGTACGAAAGCTAAAACGTAAGATATACATATTATATAAAAC