sp|Q9SK71|RIN13_ARATH ----> RPM1 interacting protein 13
Intron 1 GTAAGTATAG ... TTCATGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 63.91 | 24 | 39 | 46 |
| A2 | 67.86 | 18 | 29 | 47 |
| A3 | 65.77 | 19 | 38 | 35 |
| A4 | 74.19 | 4 | 12 | 11 |
| A5 | 73.33 | 8 | 22 | 22 |
| A6 | 61.31 | 233 | 323 | 415.5 |
| A7 | 62.12 | 246 | 358 | 449 |
| A8 | 58.41 | 351 | 375 | 611 |
| A9 | 61.89 | 244 | 346 | 446.5 |
| A10 | 59.62 | 189 | 247 | 311 |
>TRINITY_DN45114_c1_g1_i2 from sample A8 / Example spliced isoformGTTGCATGTAGAGACTATCCTCATCCAAGGCATCTCTGTGCAAAATTTTCATTCAGAAGTACACTGCCTCACAAACACTGTGCAATGTGCCACTGTTATGTATGTGATGTGCCTGCTCCATGTTCATCTTGGGATAGTCACTGTCTTGCTTCAGACAAGGAACACAGTTGGAGATGTTTGAGGAAATACCATATGACGAA
ATACCAATGATTTGACTCTCGCTAAGTATGATTGTCTGCACAGTTAAGATCATCAGCAAAAATGGTGGCAAGATTGTTGCATTTGGTCTGTTCAATAGTATCCTATGTGGCGAAACTGAGCTGTGCATTTTGAAGGTTTACTTAGATTCTTCTATTATACCACAATGTGCCATGTCAAAATAAAGTGCACAGTGGAAGCG
GGATAATGCTATTATCTCACATTCAATTATGTATTCGACTATATTTAGGAAGTGCCAAACTTTTGATTAAATATTCTTCTTTTTTGGGTATTCGACAATTGTGTTCAAGGTAAAGGAATTCTCTGTTACCTTGCATAAAGGGCTTAATGTTAACTGTCATTTCATCTTCAATTTGTATCGGGTACGATTCATCTATCTCT
GTTTGAAAATGTTACATTTTCTGTTACTACTGTGAACTTATGTTGTACAGAGTTTTTGTAAGAATTTTGATTAGTCATACTAATAATTCTTGA
>TRINITY_DN45114_c1_g1_i1 from sample A8 / Example unspliced isoform:GCTTTGTGAAGACTTACAATCTTTTAGCCAAGTCAACATTGATGAAATTCTGCTTGCTACTAGGATTGATAGAAGTAATGGCCTTCTCTTGCTGAAGACATACATGAACCTGCAGTAGGAAGTTCTAAAATGAAGAGAAACCCATATGACTCTTTATCCATCTTCATTCCCCGAAACCACTTGTCAAAAAATACTTCATC
TGGAAGGTCTAACATCTTCCCACGGTCAAACAAATTCCATCATATTCAGTGAGCATCATCCTTTAAAGTTTAAACTAAGGTAAGAATGCTTTTGCGATTTCTTGAAGATAGGGACTTTGCATAGTTTATGTAGTCTTCAATACTAGGACCATTGGATTGTCTTGTAAAATGCATCTTCCTTGGTAAAATCTCAAAAATAG
AACTAGGGTTTTGAAGAAAAACTTACCTTTCAATGGACTCCTTTGTGCAGCTAGAGGTTTGGACACTGGGATTTTAAAACAACCATAACCTCCTCAATTTCCTCAATATTAATTAAGTTTTCTATTCTGACCCCAATCTGGAAATTGCACTACTGCTCTGCTTGTTATGGCATTGGTCTTGCTGTAATATGGTTCATAAA
TAGAGAGAAAAGTGTTCCGCAAGAAATTCTTGCGAGGGTTTTGAGATCTCCAATTGAAACGACTGTAACTTCTAGATACTTCTTAAAATTCCTATTATGACCCAAATTCTGAAATGCCATGGCCACTTTGCTCCGGTCTTGCTGTAATCTTCTAATTCATAAACAAAGAGATAATTGCGCTGCAATAATTTCCCACATAG
GTTTTGAGTCACAATTTAAAATATCGTAACTTCCACAATACTTCTAAGGATCTCTATTATGATCCACATTCTGAAATGCCTCAACCACTTTGCTTCTAATGGCATTGGTATGGCTGTGATATGGTGAATAGGCTGAGAAAAAAACTGCCACAAGAAAATCCAACCCCCCCGCAAAAAAAATCTTCCGCTTGGCCCAAGAA
AATGCTTTGCTACCACTTGTAAAGAACCTTGGTAGATAAAAGATAAAACCCTTGAAGTTTGGAATAACAAATGCATCCACGCATTAATCAACACCAAGATTGTAGAGAAAACCCTTAAGGTAGGGTAACAACATTAGTTACTCCTTATGGGAGGAATCACTTTACAAGCCATGTCTGTTAAAATGCAATTCCAACATGCT
CCATACCATGATATGCACACACACACATATATATACTATCTCATGAGTATTTCTAGTTTCTAGCAGCCTATGTCAACTACCTCTCCTTGTTATATTTACTACCCACCAACTACCTAGTGGGCCTTATTCAACGAGTATGGGCCATTACATTAATTAGTTAGTTTGAACATCTAGAACCTAGTGGGTGTTATTTCATAAGT
ATTAATTATCCCCCTAGGTACTTCATTATGGTACATATACTCTCTAGGTACATTACATAGGAAACTTGGTATTTGCAAAACCTATGCCATTATGTCATTGGTTCAAAGTAATCTTAAGTCTCATATGTCTACCTATATTTTTAACACTTCTTCTGATATAAATGTAACTTTTATGTTTAAAACAAGAGAAGGTGCTGTGA
CACATTTTATGGCAGATTACGTTAGTACAGGTAATTCTTGCTGTTGAGGAGGTTTGATATAGTCCTTCCTAGGATCAAACCAATGACATATCCTCTCTAGGTAACATTACATAGGGAAACTTGGTATTTGTGAAACCTATGCCATTATGTCATTGGTTCAAAGTACTTGTACAGGCAATCCTAAGGCTCATATGTCTACC
TATATTTTTAACACTTCTTCTGATATAAATGTAACTTTTATGTTTAAAACAAGAGAAGATGCTGCTCCACATTTTATGGCAGATTACATTAGTACAGGTAATTCTTACTGTCGAGGAGGTCTGATACTAGTCCTTCCTAGTTAGAATACAACTATTGTCCCCTGTTAAAGCACATTAGTGACTCTTCCATTTCATAAACA
TAGTTCATTAGGATCATTTTTCATCTTTTCTGTTTTATCATTTCAAGTTCTTTTTACAACATAGCAAGGCATACTAACGGATATCCATAACTTGTTATCTGTTTCTGTCACCGTAGGGAGTGCAATATTACAATATTAGGGTAAATACTTTCGTGGAATAGTTGCCTTTCATAGTGTCCATGTGGTCAATGCTTATTCAT
TTATCAGAACTTTGCAGGTTGCATGTAGAGACTATCCTCATCCAAGGCATCTCTGTGCAAAATTTTCATTCAGAAGTACACTGCCTCACAAACACTGTGCAATGGTAAGTTTCTGGTGGATCTAGTTCAAAAGTATTGGCTTGTGATTTTACTGCATGTCATGGAAAGTTAAATCTAACATTTTGGTAACAATCAAGATA
ATATGGCCTATTTCGTCTTGTATAGTTTATTTCTAGCATAGAAACTATTTTCTTTCGACCTCTTTTAAAAAGTAAGCAAATGTAGACCGTTTCTGACATGTCAATGATGCAGTGCCACTGTTATGTATGTGATGTGCCTGCTCCATGTTCATCTTGGGATAGTCACTGTCTTGCTTCAGACAAGGAACACAGTTGGAGAT
GTTTGAGGAAATACCATATGACGAAATACCAATGATTTGACTCTCGCTAAGTATGATTGTCTGCACAGTTAAGATCATCAGCAAAAATGGTGGCAAGATTGTTGCATTTGGTCTGTTCAATAGTATCCTATGTGgtaagtataggtgtcagttatactgtactataagtcagttgggatccaattagattccattgcact
acttatctcccttattatctcattcatgccagGCGAAACTGAGCTGTGCATTTTGAAGGTTTACTTAGATTCTTCTATTATACCACAATGTGCCATGTCAAAATAAAGTGCACAGTGGAAGCGGGATAATGCTATTATCTCACATTCAATTATGTATTCGACTATATTTAGGAAGTGCCAAACTTTTGATTAAATATTCT
TCTTTTTTGGGTATTCGACAATTGTGTTCAAGGTAAAGGAATTCTCTGTTACCTTGCATAAAGGGCTTAATGTTAACTGTCATTTCATCTTCAATTTGTATCGGGTACGATTCATCTATCTCTGTTTGAAAATGTTACATTTTCTGTTACTACTGTGAACTTATGTTGTACAGAGTTTTTGTAAGAATTTTGATTAGTCA
TACTAATAATTCTTGA
Intron 2 GTAAGTTTCT ... AATGATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 39.37 | 44.9 | 4.8 | 29.1 |
| A2 | 27.68 | 23.6 | 1.8 | 9 |
| A3 | 20.45 | 23.5 | 2 | 6 |
| A4 | 31.28 | 20.9 | 8 | 9 |
| A5 | 8.54 | 10.8 | 1 | 1 |
| A6 | 14.99 | 241.9 | 19.8 | 42.3 |
| A7 | 23.52 | 272 | 17.8 | 83 |
| A8 | 21.09 | 256.6 | 22.5 | 68.1 |
| A9 | 19.93 | 244.6 | 23.5 | 60.1 |
| A10 | 21.76 | 232.5 | 19.5 | 64 |
>TRINITY_DN111736_c0_g1_i3 from sample A1 / Example spliced isoformAGCAATTTGAATTTATTGCTCTTTGTTGGAGGGGCGGAGATTGGAGTCTGAACCATTTCACATTCATCCCATTCCAATCTCCTTTTTTAAGGGTCATTTTGCTCTGCGGTCCAGGTTTCGAATAACAGTAAAGGCATCCATGAATGAAACCCCAATTGTTGAAAGGGGCCACTGGGATGCCTGCTAGAGATTGCAAATTC
TATACTGGTGAGGCTCTGTTTGTTCAACCTCATCGCCTCAACACCTTGTTGGCATCGGTTTAATTGGGTTTTGAGTGATGGCTTCGACAACGCAGGTCACATGGCACATTTTGACTGTTTAAAATTCTATTTGGTTTCTGTGCTTTCGAAATTTTTATTGGAACAGCAATATTGATTTTGGTGTTATTGGGTGAGATTGG
GGTTGAGTTAAGATGAGGTCTGGGGTTGAAGTTATAGATATCAGCTCTTCATCAGATGAAGATGCCAGTCCTCTGTCTACACCTTCGAGGAAGAGGCCCTTTTATCTATCAACGGATGACGAAGAGACTGACTCCTCTGAAGATGATTATGATGATGAGGATAATGATAGTGTAAAATCAGTCATAGAGGAGCCTCTGCC
CAAGAAAAAGTTAAAGTTCAAGGATGAAAGAGAAATTGAGGATTCTGATGATGATGATTGCATCATATTGGATTCTGACCCCGCGAAAACCGATATTATATTAAGTCCACACATCAGTGCATCCCTGGAATTGGTGATTACAGCAGAACGCGGTCATGTTGCATGTAGAGACTATCCTCATCCAAGGCATCTCTGTGCAA
AATTTTCATTCAGAAGTACACTGCCTCACAAACACTGTGCAATGTGCCACTGTTATGTATGTGATGTGCCTGCTCCATGTTCATCTTGGGATAGTCACTGTCTTGCTTCAGACAAGGAACACAGTTGGAGATGTTTGAGGAAATACCATATGACGAAATACCAATGATTTGACTCTCGCTAAGTATGATTGTCTGCACAG
TTAAGATCATCAGCAAAAATGGTGGCAAGATTGTTGCATTTGGTCTGTTCAATAGTATCCTATGTGGTAAGTATAGGTGTCAGTTATACTGTACTATAAGTCAGTTGGGATCCAATTAGATTCCATTGCACTACTTATCTCCCTTATTATCTCATTCATGCCAGGCGAAACTGAGCTGTGCATTTTGAAGGTTTACTTAG
ATTCTTCTATTATACCACAATGTGCCATGTCAAAATAAAGTGCACAGTGGAAGCGGGATAATGCTATTATCTCACATTCAATTATGTATTCGACTATATTTAGGAAGTGCCAAACTTTTGATTAAATACTCTTCTTTTTTGGGTATTCGACAATTGTGTTCAAGGTAAAGGAATTCTCTGTTACCTTGCATAAAGGGCTT
AATGTTAACTGTCATTTCATCTTCAATTTGTATCGGGTACGATTCATCTATCCCTG
>TRINITY_DN111736_c0_g1_i1 from sample A1 / Example unspliced isoform:CATTTCAAGTTCTTTTTACAACATAGCAAGGCATACTAACGGATATCCATAACTTGTTATCTGTTTCTGTCACCGTAGGGAGTGCAATATTACAATATTAGGGTAAATACTTTCGTGGAATAGTTGCCTTTCATAGTGTCCATGTGGTCAATGCTTATTCATTTATCAGAACTTTGCAGGTTGCATGTAGAGACTATCCT
CATCCAAGGCATCTCTGTGCAAAATTTTCATTCAGAAGTACACTGCCTCACAAACACTGTGCAATGgtaagtttctggtggatctagttcaaaagtattgccttgtgattttactgcatgtcatggaaagttaaatctaacattttggtaacaatcaagataatatggcctatttcgtcttgtatagtttatttctagca
tagaaactattttctttcgacctcttttaaaaagtatgcaaatgtagaccgtttctgacatgtcaatgatgcagTGCCACTGTTATGTATGTGATGTGCCTGCTCCATGTTCATCTTGGGATAGTCACTGTCTTGCTTCAGACAAGGAACACAGTTGGAGATGTTTGAGGAAATACCATATGACGAAATACCAATGATTT
GACTCTCGCTAAGTATGATTGTCTGCACAGTTAAGATCATCAGCAAAAATGGTGGCAAGATTGTTGCATTTGGTCTGTTCAATAGTATCCTATGTGGTAAGTATAGGTGTCAGTTATACTGTACTATAAGTCAGTTGGGATCCAATTAGATTCCATTGCACTACTTATCTCCCTTATTATCTCATTCATGCCAGGCGAAA
CTGAGCTGTGCATTTTGAAGGTTTACTTAGATTCTTCTATTATACCACAATGTGCCATGTCAAAATAAAGTGCACAGTGGAAGCGGGATAATGCTATTATCTCACATTCAATTATGTATTCGACTATATTTAGGAAGTGCCAAACTTTTGATTAAATACTCTTCTTTTTTGGGTATTCGACAATTGTGTTCAAGGTAAAG
GAATTCTCTGTTACCTTGCATAAAGGGCTTAATGTTAACTGTCATTTCATCTTCAATTTGTATCGGGTACGATTCATCTATCCCTG