NA ----> NA

Intron 1 ATTTTATGTT ... AAAAAGCTAC

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	97.06	1	54	12
A2	78.38	8	40	18
A3	72.6	10	39	14
A4	100	0	26	6
A5	88.24	2	19	11
A6	81.18	8	44	25
A7	87.27	14	146	46
A8	80.81	26	158	61
A9	77.78	17	83	36
A10	69.17	41	132	52

>TRINITY_DN45495_c1_g1_i2 from sample A8 / Example spliced isoform

CTGTTTGCGTTTTCTTTTATTTTTCGTTTTTATTTGTTTAGTTTTCTGTTTTGTTTAGATGTATTCTTTTATGTCTTGTGTTTTGGAGTCTGGATTTAGTCTGTTGGGCGGAGAGAGAAAAAGCTTATACCGAAAACAGCATATGAGAGCTTATACGGCAAAGACGTATATGTAGAAGAATTTCAACTACCGCAGAATTT
CAAGATTGGAGCTGAATTTCAGCCACTGCGCAGCTGCAGGTAGATGAGTTGAGGAATTTTTTGAAAAAGAGTATGTAAAGGAAGATGAAAAATATGCTTTAACAAAAAGCATTATGTGAAAAAGAAGATAGAGATTACTTAGTATAAATTTATGAGAATGCATCGTTTTTAATTGTTTAGTTTTATGTTTTGTTTAGATG
TATTGGTCTGGATTTAGTTTGTTGGGCGGAGAGAGAAAAAGCTTATACCGAAAACAGCATATGAGAGCTTATACGGCAAAGACGTATATGTAGAAGAATTTCAACTAC

>TRINITY_DN45495_c1_g1_i5 from sample A8 / Example unspliced isoform:

CTGTTTGCGTTTTCTTTTATTTTTCGTTTTTATTTGTTTAGTTTTCTGTTTTGTTTAGATGTATTCTTTTATGTCTTGTGTTTTGGAGTCTGGATTTAGTCTGTTGGGCGGAGAGAGAAAAAGCTTATACCGAAAACAGCATATGAGAGCTTATACGGCAAAGACGTATAGTGTAGAAGAATTTCAACTACCGCAGAATT
TCAAGATTGGAGCTGAATTTCAGCCACTGCGGAGTTGCAGGTGAGTTTTAAGTTAGAGTTGGCTTTAGACGGGACTTGGAAGAGTAAAAAGAAAGAGGAGGAGCCGGGAGTTCGTACACGAGAGGAGCGAAGCCGAACATAATTCAAGAGTTCTTTGAATCTGGAAGTCTTGTTGTTCGCCGTTGTTGAAAGAGTAAAAG
GAAGAGGAGGAGAAGCGGAGACGAACATAATTGAGGAGTTCTTTGAATTTGAGAGTCTTTTTTGAGTCTTTTGCTTTTATTTACTTCTGCTTATTTTTACCTGTAAATCTGTTTGCGTTTTCTTTTATTTTTCGTTTTTAATTGTTTAGTTTTATGTTTTGTTTAGATGTATTattttatgttttgtgttttgcgttttg
gagtctggatttagtttgttggacggagtgaaaaaaagctacGGTCTGGATTTAGTTTGTTGGGCGGAGAGAGAAAAAGCTTATACCGAAAACAGCATATGAGAGCTTATACGGCAAAGACGTATATGTAGAAGAATTTCAACTACGGCAGAATTTCAAGATTGCAGGGGAGTTTTTATTTGTGTTGAAGTGCACGACAA
ATGAAGACAATTAGAAAGGGGAGATGAAT