sp|Q8LDS4|NAKR1_ARATH ----> Protein SODIUM POTASSIUM ROOT DEFECTIVE 1
Intron 1 GTCAGTACAG ... TCTGTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.08 | 5 | 2 | 1 |
| A2 | 33.33 | 1 | 0 | 1 |
| A3 | 7.69 | 6 | 0 | 1 |
| A4 | 14.29 | 6 | 0 | 2 |
| A5 | 46.67 | 4 | 6 | 1 |
| A6 | 27.27 | 4 | 1 | 2 |
| A7 | 21.74 | 18 | 5 | 5 |
| A8 | 37.5 | 10 | 6 | 6 |
| A9 | 10.54 | 21.2 | 3 | 2 |
| A10 | 33.69 | 14.8 | 8 | 7 |
>TRINITY_DN38789_c0_g1_i1 from sample A7 / Example spliced isoformATTAATAATTAATTCCTCGGCACCGGAACCCTACAGTTTCGAGGCCTCCGTGGAAATAAATAAAATGAAATCTGGAGAATACCTGTAGGTATTTTTTTCAGAACCAATTGCCGACCGGTTTCGACTTGGAATCTCGTCTCAGAAACCCAGAAACAGAACAGAACAGAACAGGGCAGGGCCTTCATGTGACTACGGCATTA
AATTTAAGAAACCCTGATGCCCTGTCGGATAATTCGTTTCTTCAACTCTGCCACGTTGAGAATCTAAGTGCGCAGCTTTAAATGTAAAAGCGAATTCCTTGGCTTTTACCTGTTACTGCGCCTTATTTAACTTGGCAGTTTGCACCAGCTGATCTCGTCGCTGCTGTCAACTTATTCCTAATTCTTCCTCTCGGCCCCTG
CCCCGGTCCCGCTGCAATGGTCGACAAACAACGATCACGTGTATACCATCAAACTTAAATGCCCGCAATGCAGCACGCCTGAGTTTGCGCCTGGTTTTCATATCGAAACCCTGTACCGCTGGGATTATTCATTATACCCTTCTTTCTTTTTTATGCTAGTCTTCGCGTCTTCCGGTTTTGCGTGAAGCAAAGGTTTTGCA
AAATGAAGGCAATTGATATCTTCTGCGCGTCCCCGGCTTCGACTGCAATCTGCCTGAGTCTCGAACAGCGGTCTCTCGTTAGACAAGGTAGCCAGACAAGGTTGCTAGAGCGACAGGGCAGTAGAACTTTCGAGCTCAGCAATATTGTTCCCGACCAGAGTCGAAGAGAGCGCCCTAGAAAAAGCACTGAACGTCGACGA
AGTAACGCGGATCAGAGCGCGAGATCAATCGAACAGAGTCCGAAAGGAATCGAACAGAAGCCCAGAAGGTCCACACACCGCAGGAGTAGTAATTCTTTAAGCCGCTTTAGCTGTAGCGCTATTGATCAGTCGGCGATTGTTCCGTACCAGCCATCTCCGGCACCGAAGCCTTTAAAGAAATCTCCAGTTTTTATTAACGA
TCTTCCGGAATCATCCTCATCATCAACGGAAGCTACTGAGGTGGTAGTTCTGAGGGTGTCACTCCATTGCCAGGGCTGTGCAGGGAAAGTGAAAAAACACATTTCAAAGATGGAAGGGGTGACATCGTTCAGCATAGATCTGCCGAAGCAGAAGGTGACTGTGGTGGGAAACGTGACGCCATCAGAAGTCCTGGAAAGCA
TTTCCAGGGTTAAAAACGCAGAGTTCTGGCCCAGCTCCAAGAACAACAACTGATCGAAGTACTCTGTTCATGTTGGCCCATCATAGCAAATAAAGAAAAACACTGTATTTAAAACACTTCAGCAGTACTTTGGCAAACAGACAGTGCAAGAATGGCAGCAAGCACTATAATGTTAGCTATAAACCAGGCTTTGTTTTCTC
GTTTTGTTTATTTTGTAAATGTTTGTATCCAAAGGCCACGCAGAATTTATCTCATTCTGCGGACACTTGAGTGAGGTTCCCTGGCCGTTTGTATTATCAATTATGGAACGCTCATTAAGATCAAAACCAGAATCTGCAGGACAATCAGTATATCGTTTGATGTAATCTGCATAGACTTCCACTGGCAGAACTTGGGATCT
CATTACTTATTCAATTATCTAAATAAATTAATTAATCTCGATCTGTTCTTGGATGGCTGAATTCTTATGGGTATATATTTTTTAATGATTATTATATTCTTG
>TRINITY_DN38789_c0_g1_i4 from sample A7 / Example unspliced isoform:ATTAATAATTAATTCCTCGGCACCGGAACCCTACAGTTTCGAGGCCTCCGTGGAAATAAATAAAATGAAATCTGGAGAATACCTGTAGGTATTTTTTTCAGAACCAATTGCCGACCGGTTTCGACTTGGAATCTCGTCTCAGAAACCCAGAAACAGAACAGAACAGAACAGGGCAGGGCCTTCATGTGACTACGGCATTA
AATTTAAGAAACCCTGATGCCCTGTCGGATAATTCGTTTCTTCAACTCTGCCACGTTGAGAATCTAAGTGCGCAGCTTTAAATGTAAAAGCGAATTCCTTGGCTTTTACCTGTTACTGCGCCTTATTTAACTTGGCAGTTTGCACCAGCTGATCTCGTCGCTGCTGTCAACTTATTCCTAATTCTTCCTCTCGGCCCCTG
CCCCGGTCCCGCTGCAATGGTCGACAAACAAGTAATTTTTTAAAGCTTCCGGGCCGTGGATGAAAGCCAAACGGAATACTCCTTTATTTTTCTTTTTTCTGCTTTTAGTATGGTGTGAAAGGCCGTCTCCGTACTTTGGCATTTGAGGTTTCAGTGGGCGAGGATCGCTTCAAAGAATTGCGCGGTATTTTATAATGGAA
ACGCATTTGTTCATCTTACTCAATTGCTGCTTTTGCTTTTTCTGATACTTGTAGCGATCACGTGTATACCATCAAACTTAAATGCCCGCAATGCAGCACGCCTGAGTTTGCGCCTGGTTTTCATATCGAAACCCTGTACCGCTGGGATTATTCATTATACCCTTCTTTCTTTTTTATGCTAGTCTTCGCGTCTTCCGGTT
TTGCGTGAAGgtcagtacagagactgttccttgtataacggtcttcttttgcttttgttttaaggttcttttttgtgtccctgtttcttggcctggcctccatatttattcatcggatttttccgctgcctgaactctgtcctcgtctgtttcagCAAAGGTTTTGCAAAATGAAGGCAATTGATATCTTCTGCGCGTCC
CCGGCTTCGACTGCAATCTGCCTGAGTCTCGAACAGCGGTCTCTCGTTAGACAAGGTAGCCAGACAAGGTTGCTAGAGCGACAGGGCAGTAGAACTTTCGAGCTCAGCAATATTGTTCCCGACCAGAGTCGAAGAGAGCGCCCTAGAAAAAGCACTGAACGTCGACGAAGTAACGCGGATCAGAGCGCGAGATCAATCGA
ACAGAGTCCGAAAGGAATCGAACAGAAGCCCAGAAGGTCCACACACCGCAGGAGTAGTAATTCTTTAAGCCGCTTTAGCTGTAGCGCTATTGATCAGTCGGCGATTGTTCCGTACCAGCCATCTCCGGCACCGAAGCCTTTAAAGAAATCTCCAGTTTTTATTAACGATCTTCCGGAATCATCCTCATCATCAACGGAAG
CTACTGAGGTGGTAGTTCTGAGGGTGTCACTCCATTGCCAGGGCTGTGCAGGGAAAGTGAAAAAACACATTTCAAAGATGGAAGGGGTGACATCGTTCAGCATAGATCTGCCGAAGCAGAAGGTGACTGTGGTGGGAAACGTGACGCCATCAGAAGTCCTGGAAAGCATTTCCAGGGTTAAAAACGCAGAGTTCTGGCCC
AGCTCCAAGAACAACAACTGATCGAAGTACTCTGTTCATGTTGGCCCATCATAGCAAATAAAGAAAAACACTGTATTTAAAACACTTCAGCAGTACTTTGGCAAACAGACAGTGCAAGAATGGCAGCAAGCACTATAATGTTAGCTATAAACCAGGCTTTGTTTTCTCGTTTTGTTTATTTTGTAAATGTTTGTATCCAA
AGGCCACGCAGAATTTATCTCATTCTGCGGACACTTGAGTGAGGTTCCCTGGCCGTTTGTATTATCAATTATGGAACGCTCATTAAGATCAAAACCAGAATCTGCAGGACAATCAGTATATCGTTTGATGTAATCTGCATAGACTTCCACTGGCAGAACTTGGGATCTCATTACTTATTCAATTATCTAAATAAATTAAT
TAATCTCGATCTGTTCTTGGATGGCTGAATTCTTATGGGTATATATTTTTTAATGATTATTATATTCTTG
Intron 2 GTATTTTATA ... CGCAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 85.71 | 1 | 6 | 6 |
| A2 | 54.55 | 5 | 9 | 3 |
| A3 | 66.67 | 4 | 9 | 7 |
| A4 | 47.37 | 5 | 5 | 4 |
| A5 | 40 | 6 | 3 | 5 |
| A6 | 52.38 | 10 | 12 | 10 |
| A7 | 65.21 | 13 | 26 | 22.8 |
| A8 | 75.38 | 8 | 25 | 24 |
| A9 | 50.58 | 16 | 20 | 12.8 |
| A10 | 71.74 | 13 | 30 | 36 |
>TRINITY_DN33263_c0_g1_i1 from sample A6 / Example spliced isoformCCGGAACCCTACAGTTTCGAGGCCTCCGTGGAAATAAATAAAATGAAATCTGGAGAATACCTGTAGGTATTTTTTTCAGAACCAATTGCCGACCGGTTTCGACTTGGAATCTCGTCTCAGAAACCCAGAAACAGAACAGAACAGAACAGGGCAGGGCCTTCATGTGACTACGGCATTAAATTTAAGAAACCCTGATGCCC
TGTCGGATAATTCGTTTCTTCAACTCTGCCACGTTGAGAATCTAAGTGCGCAGCTTTAAATGTAAAAGCGAATTCCTTGGCTTTTACCTGTTACTGCGCCTTATTTAACTTTGCAGTTTGCACCAGCTGATCTCGTCGCTGCTGTCAACTTATTCCTAATTCTTCCTCTCGGCCCCTGCCCCGGTCCCGCTGCAATGGTC
GACAAACAAGTAATTTTTTAAAGCTTCCGGGCCGTGGATGAAAGCCAAACGGAATACTCCTTTATTTTTCTTTTTTCTGCTTTTAGTATGGTGTGAAAGGCCGTCTCCGTACTTTGGCATTTGAGGTTTCAGTGGGCGAGGATCGCTTCAAAGAATTGCGCGCACGCCTGAGTTTGCGCCTGGTTTTCATATCGAAACCC
TGTACCGCTGGGATTATTCATTATACCCTTCTTTCTTTTTTATGCTAGTCTTCGCGTCTTCCGGTTTTGCGTGAAGCAAAGGTTTTGCAAAATGAAGGCAATTGATATCTTCTGCGCGTCCCCGGCTTCGACTGCAATCTGCCTGAGTCTCGAACAGCGGTCTCTCGTTAGACAAGGTAGCCAGACAAGGTTGCTAGAGC
GACAGGGCAGTAGAACTTTCGAGCTCAGCAATATTGTTCCCGACCAGAGTCGAAGAGAGCGCCCTAGAAAAAGCACTGAACGTCGACGAAGTAACGCGGATCAGAGCGCGAGATCAATCGAACAGAGTCCGAAAGGAATCGAACAGAAGCCCAGAAGGTCCACACACCGCAGGAGTAGTAATTCTTTAAGCCGCTTTAGC
TGTAGCGCTATTGATCAGTCGGCGATTGTTCCGTACCAGCCATCTCCGGCACCGAAGCCTTTAAAGAAATCTCCAGTTTTTATTAACGATCTTCCGGAATCATCCTCATCATCAACGGAAGCTACTGAGGTGGTAGTTCTGAGGGTGTCACTCCATTGCCAGGGCTGTGCAGGGAAAGTGAAAAAACACATTTCAAAGAT
GGAAGGGGTGACATCGTTCAGCATAGATCTGCCGAAGCAGAAGGTGACTGTGGTGGGAAACGTGACGCCATCAGAAGTCCTGGAAAGCATTTCCAGGGTTAAAAACGCAGAGTTCTGGCCCAGCTCCAAGAACAACAACTGATCGAAGTACTCTGTTCATGTTGGCCCATCATAGCAAATAAAGAAAAACACTGTATTTA
AAACACTTCAGCAGTACTTTGGCAAACAGACAGTGCAAGAATGGCAGCAAGCACTATAATGTTAGCTATAAACCAGGCTTTGTTTTCTCGTTTTGTTTATTTTGTAAATGTTTGTATCCAAAGGCCACGCAGAATTTATCTCATTCTGCGGACACTTGAGTGAGGTTCCCTGGCCGTTTGTATTATCAATTATGGAACGC
TCATTAAGATCAAAACCAGAATCTGCAGGACAATCAGTATATCGTTTGATGTAATCTGCATAGACTTCCACTGGCAGAACTTGGGATCTCATTACTTATTCAATTATCTAAATAAATTAATTAATCTCGATCTGTTCTTGGATGGCTGAATTCTTA
>TRINITY_DN33263_c0_g1_i2 from sample A6 / Example unspliced isoform:CCGGAACCCTACAGTTTCGAGGCCTCCGTGGAAATAAATAAAATGAAATCTGGAGAATACCTGTAGGTATTTTTTTCAGAACCAATTGCCGACCGGTTTCGACTTGGAATCTCGTCTCAGAAACCCAGAAACAGAACAGAACAGAACAGGGCAGGGCCTTCATGTGACTACGGCATTAAATTTAAGAAACCCTGATGCCC
TGTCGGATAATTCGTTTCTTCAACTCTGCCACGTTGAGAATCTAAGTGCGCAGCTTTAAATGTAAAAGCGAATTCCTTGGCTTTTACCTGTTACTGCGCCTTATTTAACTTTGCAGTTTGCACCAGCTGATCTCGTCGCTGCTGTCAACTTATTCCTAATTCTTCCTCTCGGCCCCTGCCCCGGTCCCGCTGCAATGGTC
GACAAACAAGTAATTTTTTAAAGCTTCCGGGCCGTGGATGAAAGCCAAACGGAATACTCCTTTATTTTTCTTTTTTCTGCTTTTAGTATGGTGTGAAAGGCCGTCTCCGTACTTTGGCATTTGAGGTTTCAGTGGGCGAGGATCGCTTCAAAGAATTGCGCGgtattttataatggaaacgcatttgttcatcttactca
attgctgcttttgctttttctgatacttgtagcgatcacgtgtataccatcaaacttaaatgcccgcaatgcagCACGCCTGAGTTTGCGCCTGGTTTTCATATCGAAACCCTGTACCGCTGGGATTATTCATTATACCCTTCTTTCTTTTTTATGCTAGTCTTCGCGTCTTCCGGTTTTGCGTGAAGCAAAGGTTTTGC
AAAATGAAGGCAATTGATATCTTCTGCGCGTCCCCGGCTTCGACTGCAATCTGCCTGAGTCTCGAACAGCGGTCTCTCGTTAGACAAGGTAGCCAGACAAGGTTGCTAGAGCGACAGGGCAGTAGAACTTTCGAGCTCAGCAATATTGTTCCCGACCAGAGTCGAAGAGAGCGCCCTAGAAAAAGCACTGAACGTCGACG
AAGTAACGCGGATCAGAGCGCGAGATCAATCGAACAGAGTCCGAAAGGAATCGAACAGAAGCCCAGAAGGTCCACACACCGCAGGAGTAGTAATTCTTTAAGCCGCTTTAGCTGTAGCGCTATTGATCAGTCGGCGATTGTTCCGTACCAGCCATCTCCGGCACCGAAGCCTTTAAAGAAATCTCCAGTTTTTATTAACG
ATCTTCCGGAATCATCCTCATCATCAACGGAAGCTACTGAGGTGGTAGTTCTGAGGGTGTCACTCCATTGCCAGGGCTGTGCAGGGAAAGTGAAAAAACACATTTCAAAGATGGAAGGGGTGACATCGTTCAGCATAGATCTGCCGAAGCAGAAGGTGACTGTGGTGGGAAACGTGACGCCATCAGAAGTCCTGGAAAGC
ATTTCCAGGGTTAAAAACGCAGAGTTCTGGCCCAGCTCCAAGAACAACAACTGATCGAAGTACTCTGTTCATGTTGGCCCATCATAGCAAATAAAGAAAAACACTGTATTTAAAACACTTCAGCAGTACTTTGGCAAACAGACAGTGCAAGAATGGCAGCAAGCACTATAATGTTAGCTATAAACCAGGCTTTGTTTTCT
CGTTTTGTTTATTTTGTAAATGTTTGTATCCAAAGGCCACGCAGAATTTATCTCATTCTGCGGACACTTGAGTGAGGTTCCCTGGCCGTTTGTATTATCAATTATGGAACGCTCATTAAGATCAAAACCAGAATCTGCAGGACAATCAGTATATCGTTTGATGTAATCTGCATAGACTTCCACTGGCAGAACTTGGGATC
TCATTACTTATTCAATTATCTAAATAAATTAATTAATCTCGATCTGTTCTTGGATGGCTGAATTCTTA
Intron 3 GTAATTTTTT ... ATACTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.14 | 3 | 1 | 7 |
| A2 | 100 | 0 | 4 | 6 |
| A3 | 76.19 | 1.6 | 4 | 6 |
| A4 | 46.25 | 4.2 | 3 | 4 |
| A5 | 100 | 0 | 0 | 1 |
| A6 | 100 | 0 | 8 | 10 |
| A7 | 95.47 | 1.2 | 25 | 24 |
| A8 | 86.05 | 3 | 6 | 31 |
| A9 | 85.29 | 2.6 | 17 | 13 |
| A10 | 81.92 | 6.4 | 17 | 40 |
>TRINITY_DN38789_c0_g1_i1 from sample A7 / Example spliced isoformATTAATAATTAATTCCTCGGCACCGGAACCCTACAGTTTCGAGGCCTCCGTGGAAATAAATAAAATGAAATCTGGAGAATACCTGTAGGTATTTTTTTCAGAACCAATTGCCGACCGGTTTCGACTTGGAATCTCGTCTCAGAAACCCAGAAACAGAACAGAACAGAACAGGGCAGGGCCTTCATGTGACTACGGCATTA
AATTTAAGAAACCCTGATGCCCTGTCGGATAATTCGTTTCTTCAACTCTGCCACGTTGAGAATCTAAGTGCGCAGCTTTAAATGTAAAAGCGAATTCCTTGGCTTTTACCTGTTACTGCGCCTTATTTAACTTGGCAGTTTGCACCAGCTGATCTCGTCGCTGCTGTCAACTTATTCCTAATTCTTCCTCTCGGCCCCTG
CCCCGGTCCCGCTGCAATGGTCGACAAACAACGATCACGTGTATACCATCAAACTTAAATGCCCGCAATGCAGCACGCCTGAGTTTGCGCCTGGTTTTCATATCGAAACCCTGTACCGCTGGGATTATTCATTATACCCTTCTTTCTTTTTTATGCTAGTCTTCGCGTCTTCCGGTTTTGCGTGAAGCAAAGGTTTTGCA
AAATGAAGGCAATTGATATCTTCTGCGCGTCCCCGGCTTCGACTGCAATCTGCCTGAGTCTCGAACAGCGGTCTCTCGTTAGACAAGGTAGCCAGACAAGGTTGCTAGAGCGACAGGGCAGTAGAACTTTCGAGCTCAGCAATATTGTTCCCGACCAGAGTCGAAGAGAGCGCCCTAGAAAAAGCACTGAACGTCGACGA
AGTAACGCGGATCAGAGCGCGAGATCAATCGAACAGAGTCCGAAAGGAATCGAACAGAAGCCCAGAAGGTCCACACACCGCAGGAGTAGTAATTCTTTAAGCCGCTTTAGCTGTAGCGCTATTGATCAGTCGGCGATTGTTCCGTACCAGCCATCTCCGGCACCGAAGCCTTTAAAGAAATCTCCAGTTTTTATTAACGA
TCTTCCGGAATCATCCTCATCATCAACGGAAGCTACTGAGGTGGTAGTTCTGAGGGTGTCACTCCATTGCCAGGGCTGTGCAGGGAAAGTGAAAAAACACATTTCAAAGATGGAAGGGGTGACATCGTTCAGCATAGATCTGCCGAAGCAGAAGGTGACTGTGGTGGGAAACGTGACGCCATCAGAAGTCCTGGAAAGCA
TTTCCAGGGTTAAAAACGCAGAGTTCTGGCCCAGCTCCAAGAACAACAACTGATCGAAGTACTCTGTTCATGTTGGCCCATCATAGCAAATAAAGAAAAACACTGTATTTAAAACACTTCAGCAGTACTTTGGCAAACAGACAGTGCAAGAATGGCAGCAAGCACTATAATGTTAGCTATAAACCAGGCTTTGTTTTCTC
GTTTTGTTTATTTTGTAAATGTTTGTATCCAAAGGCCACGCAGAATTTATCTCATTCTGCGGACACTTGAGTGAGGTTCCCTGGCCGTTTGTATTATCAATTATGGAACGCTCATTAAGATCAAAACCAGAATCTGCAGGACAATCAGTATATCGTTTGATGTAATCTGCATAGACTTCCACTGGCAGAACTTGGGATCT
CATTACTTATTCAATTATCTAAATAAATTAATTAATCTCGATCTGTTCTTGGATGGCTGAATTCTTATGGGTATATATTTTTTAATGATTATTATATTCTTG
>TRINITY_DN38789_c0_g1_i5 from sample A7 / Example unspliced isoform:ATTAATAATTAATTCCTCGGCACCGGAACCCTACAGTTTCGAGGCCTCCGTGGAAATAAATAAAATGAAATCTGGAGAATACCTGTAGGTATTTTTTTCAGAACCAATTGCCGACCGGTTTCGACTTGGAATCTCGTCTCAGAAACCCAGAAACAGAACAGAACAGAACAGGGCAGGGCCTTCATGTGACTACGGCATTA
AATTTAAGAAACCCTGATGCCCTGTCGGATAATTCGTTTCTTCAACTCTGCCACGTTGAGAATCTAAGTGCGCAGCTTTAAATGTAAAAGCGAATTCCTTGGCTTTTACCTGTTACTGCGCCTTATTTAACTTGGCAGTTTGCACCAGCTGATCTCGTCGCTGCTGTCAACTTATTCCTAATTCTTCCTCTCGGCCCCTG
CCCCGGTCCCGCTGCAATGGTCGACAAACAAgtaattttttaaagcttccgggccgtggatgaaagccaaacggaatactcctttatttttcttttttctgcttttagtatggtgtgaaaggccgtctccgtactttggcatttgaggtttcagtgggcgaggatcgcttcaaagaattgcgcggtattttataatggaa
acgcatttgttcatcttactcaattgctgcttttgctttttctgatacttgtagCGATCACGTGTATACCATCAAACTTAAATGCCCGCAATGCAGCACGCCTGAGTTTGCGCCTGGTTTTCATATCGAAACCCTGTACCGCTGGGATTATTCATTATACCCTTCTTTCTTTTTTATGCTAGTCTTCGCGTCTTCCGGTT
TTGCGTGAAGCAAAGGTTTTGCAAAATGAAGGCAATTGATATCTTCTGCGCGTCCCCGGCTTCGACTGCAATCTGCCTGAGTCTCGAACAGCGGTCTCTCGTTAGACAAGGTAGCCAGACAAGGTTGCTAGAGCGACAGGGCAGTAGAACTTTCGAGCTCAGCAATATTGTTCCCGACCAGAGTCGAAGAGAGCGCCCTA
GAAAAAGCACTGAACGTCGACGAAGTAACGCGGATCAGAGCGCGAGATCAATCGAACAGAGTCCGAAAGGAATCGAACAGAAGCCCAGAAGGTCCACACACCGCAGGAGTAGTAATTCTTTAAGCCGCTTTAGCTGTAGCGCTATTGATCAGTCGGCGATTGTTCCGTACCAGCCATCTCCGGCACCGAAGCCTTTAAAG
AAATCTCCAGTTTTTATTAACGATCTTCCGGAATCATCCTCATCATCAACGGAAGCTACTGAGGTGGTAGTTCTGAGGGTGTCACTCCATTGCCAGGGCTGTGCAGGGAAAGTGAAAAAACACATTTCAAAGATGGAAGGGGTGACATCGTTCAGCATAGATCTGCCGAAGCAGAAGGTGACTGTGGTGGGAAACGTGAC
GCCATCAGAAGTCCTGGAAAGCATTTCCAGGGTTAAAAACGCAGAGTTCTGGCCCAGCTCCAAGAACAACAACTGATCGAAGTACTCTGTTCATGTTGGCCCATCATAGCAAATAAAGAAAAACACTGTATTTAAAACACTTCAGCAGTACTTTGGCAAACAGACAGTGCAAGAATGGCAGCAAGCACTATAATGTTAGC
TATAAACCAGGCTTTGTTTTCTCGTTTTGTTTATTTTGTAAATGTTTGTATCCAAAGGCCACGCAGAATTTATCTCATTCTGCGGACACTTGAGTGAGGTTCCCTGGCCGTTTGTATTATCAATTATGGAACGCTCATTAAGATCAAAACCAGAATCTGCAGGACAATCAGTATATCGTTTGATGTAATCTGCATAGACT
TCCACTGGCAGAACTTGGGATCTCATTACTTATTCAATTATCTAAATAAATTAATTAATCTCGATCTGTTCTTGGATGGCTGAATTCTTATGGGTATATATTTTTTAATGATTATTATATTCTTG
Intron 4 GTAAGAAGAA ... TGTACACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 0 |
| A2 | 23.08 | 10 | 2 | 3 |
| A3 | 42.11 | 11 | 0 | 8 |
| A4 | 50 | 2 | 0 | 2 |
| A5 | 0 | 6 | 0 | 0 |
| A6 | 28.57 | 10 | 0 | 4 |
| A7 | 33.93 | 37 | 5.3 | 19 |
| A8 | 28.57 | 40 | 3.3 | 16 |
| A9 | 26.56 | 47 | 4.7 | 17 |
| A10 | 27.87 | 44 | 8 | 17 |
>TRINITY_DN38789_c0_g1_i4 from sample A7 / Example spliced isoformATTAATAATTAATTCCTCGGCACCGGAACCCTACAGTTTCGAGGCCTCCGTGGAAATAAATAAAATGAAATCTGGAGAATACCTGTAGGTATTTTTTTCAGAACCAATTGCCGACCGGTTTCGACTTGGAATCTCGTCTCAGAAACCCAGAAACAGAACAGAACAGAACAGGGCAGGGCCTTCATGTGACTACGGCATTA
AATTTAAGAAACCCTGATGCCCTGTCGGATAATTCGTTTCTTCAACTCTGCCACGTTGAGAATCTAAGTGCGCAGCTTTAAATGTAAAAGCGAATTCCTTGGCTTTTACCTGTTACTGCGCCTTATTTAACTTGGCAGTTTGCACCAGCTGATCTCGTCGCTGCTGTCAACTTATTCCTAATTCTTCCTCTCGGCCCCTG
CCCCGGTCCCGCTGCAATGGTCGACAAACAAGTAATTTTTTAAAGCTTCCGGGCCGTGGATGAAAGCCAAACGGAATACTCCTTTATTTTTCTTTTTTCTGCTTTTAGTATGGTGTGAAAGGCCGTCTCCGTACTTTGGCATTTGAGGTTTCAGTGGGCGAGGATCGCTTCAAAGAATTGCGCGGTATTTTATAATGGAA
ACGCATTTGTTCATCTTACTCAATTGCTGCTTTTGCTTTTTCTGATACTTGTAGCGATCACGTGTATACCATCAAACTTAAATGCCCGCAATGCAGCACGCCTGAGTTTGCGCCTGGTTTTCATATCGAAACCCTGTACCGCTGGGATTATTCATTATACCCTTCTTTCTTTTTTATGCTAGTCTTCGCGTCTTCCGGTT
TTGCGTGAAGGTCAGTACAGAGACTGTTCCTTGTATAACGGTCTTCTTTTGCTTTTGTTTTAAGGTTCTTTTTTGTGTCCCTGTTTCTTGGCCTGGCCTCCATATTTATTCATCGGATTTTTCCGCTGCCTGAACTCTGTCCTCGTCTGTTTCAGCAAAGGTTTTGCAAAATGAAGGCAATTGATATCTTCTGCGCGTCC
CCGGCTTCGACTGCAATCTGCCTGAGTCTCGAACAGCGGTCTCTCGTTAGACAAGGTAGCCAGACAAGGTTGCTAGAGCGACAGGGCAGTAGAACTTTCGAGCTCAGCAATATTGTTCCCGACCAGAGTCGAAGAGAGCGCCCTAGAAAAAGCACTGAACGTCGACGAAGTAACGCGGATCAGAGCGCGAGATCAATCGA
ACAGAGTCCGAAAGGAATCGAACAGAAGCCCAGAAGGTCCACACACCGCAGGAGTAGTAATTCTTTAAGCCGCTTTAGCTGTAGCGCTATTGATCAGTCGGCGATTGTTCCGTACCAGCCATCTCCGGCACCGAAGCCTTTAAAGAAATCTCCAGTTTTTATTAACGATCTTCCGGAATCATCCTCATCATCAACGGAAG
CTACTGAGGTGGTAGTTCTGAGGGTGTCACTCCATTGCCAGGGCTGTGCAGGGAAAGTGAAAAAACACATTTCAAAGATGGAAGGGGTGACATCGTTCAGCATAGATCTGCCGAAGCAGAAGGTGACTGTGGTGGGAAACGTGACGCCATCAGAAGTCCTGGAAAGCATTTCCAGGGTTAAAAACGCAGAGTTCTGGCCC
AGCTCCAAGAACAACAACTGATCGAAGTACTCTGTTCATGTTGGCCCATCATAGCAAATAAAGAAAAACACTGTATTTAAAACACTTCAGCAGTACTTTGGCAAACAGACAGTGCAAGAATGGCAGCAAGCACTATAATGTTAGCTATAAACCAGGCTTTGTTTTCTCGTTTTGTTTATTTTGTAAATGTTTGTATCCAA
AGGCCACGCAGAATTTATCTCATTCTGCGGACACTTGAGTGAGGTTCCCTGGCCGTTTGTATTATCAATTATGGAACGCTCATTAAGATCAAAACCAGAATCTGCAGGACAATCAGTATATCGTTTGATGTAATCTGCATAGACTTCCACTGGCAGAACTTGGGATCTCATTACTTATTCAATTATCTAAATAAATTAAT
TAATCTCGATCTGTTCTTGGATGGCTGAATTCTTATGGGTATATATTTTTTAATGATTATTATATTCTTG
>TRINITY_DN38789_c0_g1_i2 from sample A7 / Example unspliced isoform:ATTAATAATTAATTCCTCGGCACCGGAACCCTACAGTTTCGAGGCCTCCGTGGAAATAAATAAAATGAAATCTGGAGAATACCTGTAGGTATTTTTTTCAGAACCAATTGCCGACCGGTTTCGACTTGGAATCTCGTCTCAGAAACCCAGAAACAGAACAGAACAGAACAGGGCAGGGCCTTCATGTGACTACGGCATTA
AATTTAAGAAACCCTGATGCCCTGTCGGATAATTCGTTTCTTCAACTCTGCCACGTTGAGAATCTAAGTGCGCAGCTTTAAATGTAAAAGCGAATTCCTTGGCTTTTACCTGTTACTGCGCCTTATTTAACTTGGCAGTTTGCACCAGCTGATCTCGTCGCTGCTGTCAACTTATTCCTAATTCTTCCTCTCGGCCCCTG
CCCCGGTCCCGCTGCAATGGTCGACAAACAAGTAATTTTTTAAAGCTTCCGGGCCGTGGATGAAAGCCAAACGGAATACTCCTTTATTTTTCTTTTTTCTGCTTTTAGTATGGTGTGAAAGGCCGTCTCCGTACTTTGGCATTTGAGGTTTCAGTGGGCGAGGATCGCTTCAAAGAATTGCGCGGTATTTTATAATGGAA
ACGCATTTGTTCATCTTACTCAATTGCTGCTTTTGCTTTTTCTGATACTTGTAGCGATCACGTGTATACCATCAAACTTAAATGCCCGCAATGCAGCACGCCTGAGTTTGCGCCTGGTTTTCATATCGAAACCCTGTACCGCTGGGATTATTCATTATACCCTTCTTTCTTTTTTATGCTAGTCTTCGCGTCTTCCGGTT
TTGCGTGAAGCAAAGGTTTTGCAAAATGAAGGCAATTGATATCTTCTGCGCGTCCCCGGCTTCGACTGCAATCTGCCTGAGTCTCGAACAGCGGTCTCTCGTTAGACAAGGTAGCCAGACAAGGTTGCTAGAGCGACAGGGCAGTAGAACTTTCGAGCTCAGCAATATTGTTCCCGACCAGAGTCGAAGAGAGCGCCCTA
GAAAAAGCACTGAACGTCGACGAAGTAACGCGGATCAGAGCGCGAGATCAATCGAACAGAGTCCGAAAGGAATCGAACAGAAGCCCAGAAGGTCCACACACCGCAGGAGTAGTAATTCTTTAAGCCGCTTTAGCTGTAGCGCTATTGATCAGTCGGCGATTGTTCCGTACCAGCCATCTCCGGCACCGAAGCCTTTAAAG
AAATCTCCAGTTTTTATTAACGATCTTCCGGAATCATCCTCATCATCAACGGAAGCTACTGAGGTGGTAGTTCTGAGGGTGTCACTCCATTGCCAGGGCTGTGCAGGGAAAGTGAAAAAACACATTTCAAAGATGGAAGgtaagaagaattgggctttcatttttccttctgatccaataaaaatttaatgtctgccagt
atttcatggataacgccctgttaatgccaaatgctgattcaaaagaatccatcaacaatttaacaccaagttctagtttgagagcagtggcccaagaaccaatttggaatctatctaattgcatcaattgctatggagctttggcacttggttcactgctgtttgacatgatcttggtgttggattggatagagcaacag
ccctaaaattgaagtatgcagctgactgatcgtcttgttgttgttgaatatgtacaccagGGGTGACATCGTTCAGCATAGATCTGCCGAAGCAGAAGGTGACTGTGGTGGGAAACGTGACGCCATCAGAAGTCCTGGAAAGCATTTCCAGGGTTAAAAACGCAGAGTTCTGGCCCAGCTCCAAGAACAACAACTGATCG
AAGTACTCTGTTCATGTTGGCCCATCATAGCAAATAAAGAAAAACACTGTATTTAAAACACTTCAGCAGTACTTTGGCAAACAGACAGTGCAAGAATGGCAGCAAGCACTATAATGTTAGCTATAAACCAGGCTTTGTTTTCTCGTTTTGTTTATTTTGTAAATGTTTGTATCCAAAGGCCACGCAGAATTTATCTCATT
CTGCGGACACTTGAGTGAGGTTCCCTGGCCGTTTGTATTATCAATTATGGAACGCTCATTAAGATCAAAACCAGAATCTGCAGGACAATCAGTATATCGTTTGATGTAATCTGCATAGACTTCCACTGGCAGAACTTGGGATCTCATTACTTATTCAATTATCTAAATAAATTAATTAATCTCGATCTGTTCTTGGATGG
CTGAATTCTTATGGGTATATATTTTTTAATGATTATTATATTCTTG