NA ----> NA
Intron 1 GTAATGAATG ... ACTGTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.67 | 58 | 16 | 18 |
| A2 | 19.54 | 35 | 6 | 11 |
| A3 | 24.41 | 48 | 7 | 24 |
| A4 | 23.56 | 73 | 18 | 27 |
| A5 | 26.67 | 22 | 7 | 9 |
| A6 | 19.9 | 165 | 48 | 34 |
| A7 | 20.39 | 324 | 70 | 96 |
| A8 | 20.45 | 315 | 83 | 79 |
| A9 | 21.54 | 235 | 73 | 56 |
| A10 | 20.32 | 296 | 65 | 86 |
>TRINITY_DN94870_c0_g1_i1 from sample A4 / Example spliced isoformCGTGTGATGGATCTAGAGGCCATAAAAGAACCTATAGCAAGTGCATTTGTCCAATTTCTGATCGCACAAGTTCAAATCTAAATCTACACATCCCACCAACCAAGATTCTGCGCGAGAAAAGCATTGCGGGTCGAGACAATGCCTGCCCAACACGCTGTAACGTACAGAACGAGATGGACGGCTCTGTTGGCTTAGAATCT
TGGATTTTTCATTTCCAAATTCCCACCCGTATCCAGTGCCGCGGGTGATTCCCGGTTTCTTGATTTCTGCTTTTGTTCTCGAATTTAGATTTGATTATCAATAACGACCTGTTCTACAGCTTAATCCACCGACATATTCTGTATTTGTTGCTTTTCCTTCACGTCTTTCATTTGGTCTTGTCTGAACTCGCCGTGAACAT
TATTCTAAAAGGATTTCAAGGCTCGAAGCGATGAATAGGAATGAATTTAGGGTTTAATTTCATAAAGTCTGTAGCATTTAAGAGATTAAACTGAAATAGATTTTGGTCGGATATGACCTTACAGTACTAAAATATTGTTGTTAAGGAAGAATGGACAGATTCGGTAAGCCCAGGAACAGATGCAGTTTTCATCCATCGCA
GGCAGTAGTAGGGATCTGCTCGTCATGTCTCAGAGAACGGCTGGTGAGCTTGGCAAGGGCCAATTATGAACAGCGCAAGTCGGAGATCGTTTACAAGCCCGATCCCGCGTCTTGGGGTTCCCTTCGTTTCAGGAAAAAGAATTTTGATGACGTTGAAGGGGCTCGAGACCTTGACCTCATTGCGAGAGCCAAGCCACAGA
ATGATAACAGCTCCGATGAGAAAAAAGAAGGGAAGGTTAATCTTTCTGGGTTCAGATCGTTCTTGGGATTTTTCAGGAAAACAGACTGCAGAAACAATGTCTCTGTGCTGGAAAGACAAGAAAACAGATTACAGCGACGCCATGATCGATGTGCGGACGTGCAAGATTCTTGGGAACCTTCTGTGAGGACGAAAACTGGG
TGCCCTTCTTCAACAAGACGCAGCGTTTCAGAGCGCAGATTGACGGGCAGGCGTTATTCCAAGGGCTCTGCCCTGAGAAGATCCAGTACGTCTTATCATAATGAAATGGAGGATACCATAGAATCTGGCATCACAAAGAAGCTGCCGAACGACGGTGAAAAAGATGAGGGGAAGTTAATAAATGTGTCGGATTCCATGGC
AAGGTGCAGAAGCCAAAGAGGTAAATCCGGAATGAGGGATTTGGAGATCAAGGATTCGAAAGTTAACAGTGTAATAAACGACTGCTTGCCCAGTAATAAGAGCAGGAAATCCATGAATTATGACTTGTAAGTTGTATTACAGTACGTGTGGTCGTCCCCATGAGCGCCGCCAAGGTGGGAAATCAAGGGTCAGCAATCTT
AGAAGCTCGGTTCGGAGTTTTGTACTTCAGAGATCTGTAAAGAAATTTAGTGGTCAGGCAGCTTCATCTGAAAAGAAAGATGAGAGCGTTCTTGTTTATAAAGCTATGGCGGCCATAGTAGCTGGTAGAGTGTGAGAAGAGAGGCTATCTTCTTCTCCAAATCCTTTTCATGCTTAGTGTTCTTATACTTTCATGTCTCT
CCACCAGCGGAATCTGTTGTCAATTGTACTGTATCACTGTATTTATTTTAGTTCTGGGACTTCTTATGTCTGGAAAATTTGTTTATACACCCACAATACATGAATATATATATATATATACCTTCTTTGTCGCA
>TRINITY_DN94870_c0_g1_i2 from sample A4 / Example unspliced isoform:CGTGTGATGGATCTAGAGGCCATAAAAGAACCTATAGCAAGTGCATTTGTCCAATTTCTGATCGCACAAGTTCAAATCTAAATCTACACATCCCACCAACCAAGATTCTGCGCGAGAAAAGCATTGCGGGTCGAGACAATGCCTGCCCAACACGCTGTAACGTACAGAACGAGATGGACGGCTCTGTTGGCTTAGAATCT
TGGATTTTTCATTTCCAAATTCCCACCCGTATCCAGTGCCGCGGGTGATTCCCGGTTTCTTGATTTCTGCTTTTGTTCTCGAATTTAGATTTGATTATCAATAACGACCTGTTCTACAGCTTAATCCACCGACATATTCTGTATTTGTTGCTTTTCCTTCACGTCTTTCATTTGGTCTTGTCTGAACTCGCCGTGAACAT
TATTCTAAAAGGATTTCAAGGCTCGAAGCGATGAATAGGAATGAATTTAGGGTTTAATTTCATAAAGTCTGTAGCATTTAAGAGATTAAACTGAAATAGATTTTGGTCGGATATGACCTTACAGTACTAAAATATTGTTGTTAAGGAAGAATGGACAGATTCGGTAAGCCCAGGAACAGATGCAGTTTTCATCCATCGCA
GGCAGTAGTAGGGATCTGCTCGTCATGTCTCAGAGAACGGCTGGTGAGCTTGGCAAGGGCCAATTATGAACAGCGCAAGTCGGAGATCGTTTACAAGCCCGATCCCGCGTCTTGGGGTTCCCTTCGTTTCAGGAAAAAGAATTTTGATGACGTTGAAGGGGCTCGAGACCTTGACCTCATTGCGAGAGCCAAGCCACAGA
ATGATAACAGCTCCGATGAGAAAAAAGAAGGGAAGGTTAATCTTTCTGGGTTCAGATCGTTCTTGGGATTTTTCAGGAAAACAGACTGCAGAAACAATGTCTCTGTGCTGGAAAGACAAGAAAACAGATTACAGCGACGCCATGATCGATGTGCGGACGTGCAAGgtaatgaatgaattagtgttcttcttttaactggt
agaaatttagaattagggttaggataaattgcaaactgatatactgtgagtcgactgttacagATTCTTGGGAACCTTCTGTGAGGACGAAAACTGGGTGCCCTTCTTCAACAAGACGCAGCGTTTCAGAGCGCAGATTGACGGGCAGGCGTTATTCCAAGGGCTCTGCCCTGAGAAGATCCAGTACGTCTTATCATAAT
GAAATGGAGGATACCATAGAATCTGGCATCACAAAGAAGCTGCCGAACGACGGTGAAAAAGATGAGGGGAAGTTAATAAATGTGTCGGATTCCATGGCAAGGTGCAGAAGCCAAAGAGGTAAATCCGGAATGAGGGATTTGGAGATCAAGGATTCGAAAGTTAACAGTGTAATAAACGACTGCTTGCCCAGTAATAAGAG
CAGGAAATCCATGAATTATGACTTGTAAGTTGTATTACAGTACGTGTGGTCGTCCCCATGAGCGCCGCCAAGGTGGGAAATCAAGGGTCAGCAATCTTAGAAGCTCGGTTCGGAGTTTTGTACTTCAGAGATCTGTAAAGAAATTTAGTGGTCAGGCAGCTTCATCTGAAAAGAAAGATGAGAGCGTTCTTGTTTATAAA
GCTATGGCGGCCATAGTAGCTGGTAGAGTGTGAGAAGAGAGGCTATCTTCTTCTCCAAATCCTTTTCATGCTTAGTGTTCTTATACTTTCATGTCTCTCCACCAGCGGAATCTGTTGTCAATTGTACTGTATCACTGTATTTATTTTAGTTCTGGGACTTCTTATGTCTGGAAAATTTGTTTATACACCCACAATACATG
AATATATATATATATATACCTTCTTTGTCGCA
Intron 2 GTGATTCCCG ... GACCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 77.27 | 15 | 45 | 57 |
| A2 | 53.01 | 39 | 54 | 34 |
| A3 | 54.39 | 52 | 72 | 52 |
| A4 | 67.53 | 25 | 43 | 61 |
| A5 | 54.33 | 29 | 19 | 50 |
| A6 | 57.03 | 84 | 101 | 122 |
| A7 | 54.04 | 199 | 210 | 258 |
| A8 | 54.77 | 140 | 130 | 209 |
| A9 | 56.56 | 159 | 184 | 230 |
| A10 | 51.96 | 306 | 348 | 314 |
>TRINITY_DN46970_c0_g1_i4 from sample A7 / Example spliced isoformCAGAGAAGGTAGGACTGGTGCGACGTGTGATGGATCTAGAGGCCATAAAAGAACCTATAGCAAGTGCATTTGTCCAATTTCTGATCGCACAAGTTCAAATCTAAATCTACACATCCCACCAACCAAGATTCTGCGCGAGAAAAGCATTGCGGGTCGAGACAATGCCTGCCCAACACGCTGTAACGTACAGAACGAGATGG
ACGGCTCTGTTGGCTTAGAATCTTGGATTTTTCATTTCCAAATTCCCACCCGTATCCAGTGCCGCGGTACTAAAATATTGTTGTTAAGGAAGAATGGACAGATTCGGTAAGCCCAGGAACAGATGCAGTTTTCATCCATCGCAGGCAGTAGTAGGGATCTGCTCGTCATGTCTCAGAGAACGGCTGGTGAGCTTGGCAAG
GGCCAATTATGAACAGCGCAAGTCGGAGATCGTTTACAAGCCCGATCCCGCGTCTTGGGGTTCCCTTCGTTTCAGGAAAAAGAATTTTGATGACGTTGAAGGGGCTCGAGACCTTGACCTCATTGCGAGAGCCAAGCCACAGAATGATAACAGCTCCGATGAGAAAAAAGAAGGGAAGGTTAATCTTTCTGGGTTCAGAT
CGTTCTTGGGATTTTTCAGGAAAACAGACTGCAGAAACAATGTCTCTGTGCTGGAAAGACAAGAAAACAGATTACAGCGACGCCATGATCGATGTGCGGACGTGCAAGATTCTTGGGAACCTTCTGTGAGGACGAAAACTGGGTGCCCTTCTTCAACAAGACGCAGCGTTTCAGAGCGCAGATTGACGGGCAGGCGTTAT
TCCAAGGGCTCTGCCCTGAGAAGATCCAGTACGTCTTATCATAATGAAATGGAGGATACCATAGAATCTGGCATCACAAAGAAGCTGCCGAACGACGGTGAAAAAGATGAGGGGAAGTTAATAAATGTGTCGGATTCCATGGCAAGGTGCAGAAGCCAAAGAGGTAAATCCGGAATGAGGGATTTGGAGATCAAGGATTC
GAAAGTTAACAGTGTAATAAACGACTGCTTGCCCAGTAATAAGAGCAGGAAATCCATGAATTATGACTTGTAAGTTGTATTACAGTACGTGTGGTCGTCCCCATGAGCGCCGCCAAGGTGGGAAATCAAGGGTCAGCAATCTTAGAAGCTCGGTTCGGAGTTTTGTACTTCAGAGATCTGTAAAGAAATTTAGTGGTCAG
GCAGCTTCATCTGAAAAGAAAGATGAGAGCGTTCTTGTTTATAAAGCTATGGCGGCCATAGTAGCTGGTAGAGTGTGAGAAGAGAGGCTATCTTCTTCTCCAAATCCTTTTCATGCTTAGTGTTCTTATACTTTCATGTCTCTCCACCAGCGGAATCTGTTGTCAATTGTACTGTATCACTGTATTTATTTTAGTTCTGG
GACTTCTTATGTCTGGAAAATTTGTTTATACACCCACAATACATGAATATATATATATATATACCTTCTTTGTCGCATGATTTCGTATTCGCATTGAAATTTCTGAATCACTGGATCAGTACTGGTCACAACCATCCAAATTATAATTGTAGCCACTATTTATCACAAATTGTAACCACATTTGATCAGAAATTGCCAAT
TGAGATCATGTCTAAAGTAATTTGTGAAGACCTAATTAGCACACGTAACTTGTAAGGAAGGTTACATTCACAGTCACACATAAAATGTTCCACATGTAAAACTTTCAGTGTTGTTCTTTTGTGAGGAATAAATTTCCAAG
>TRINITY_DN46970_c0_g1_i1 from sample A7 / Example unspliced isoform:CAGAGAAGGTAGGACTGGTGCGACGTGTGATGGATCTAGAGGCCATAAAAGAACCTATAGCAAGTGCATTTGTCCAATTTCTGATCGCACAAGTTCAAATCTAAATCTACACATCCCACCAACCAAGATTCTGCGCGAGAAAAGCATTGCGGGTCGAGACAATGCCTGCCCAACACGCTGTAACGTACAGAACGAGATGG
ACGGCTCTGTTGGCTTAGAATCTTGGATTTTTCATTTCCAAATTCCCACCCGTATCCAGTGCCGCGGgtgattcccggtttcttgatttctgcttttgttctcgaatttagatttgattatcaataacgacctgttctacagcttaatccaccgacatattctgtatttgttgcttttccttcacgtctttcatttggtc
ttgtctgaactcgccgtgaacattattctaaaaggatttcaaggctcgaagcgatgaataggaatgaatttagggtttaatttcataaagtctgtagcatttaagagattaaactgaaatagattttggtcggatatgaccttgcagTACTAAAATATTGTTGTTAAGGAAGAATGGACAGATTCGGTAAGCCCAGGAAC
AGATGCAGTTTTCATCCATCGCAGGCAGTAGTAGGGATCTGCTCGTCATGTCTCAGAGAACGGCTGGTGAGCTTGGCAAGGGCCAATTATGAACAGCGCAAGTCGGAGATCGTTTACAAGCCCGATCCCGCGTCTTGGGGTTCCCTTCGTTTCAGGAAAAAGAATTTTGATGACGTTGAAGGGGCTCGAGACCTTGACCT
CATTGCGAGAGCCAAGCCACAGAATGATAACAGCTCCGATGAGAAAAAAGAAGGGAAGGTTAATCTTTCTGGGTTCAGATCGTTCTTGGGATTTTTCAGGAAAACAGACTGCAGAAACAATGTCTCTGTGCTGGAAAGACAAGAAAACAGATTACAGCGACGCCATGATCGATGTGCGGACGTGCAAGGTAATGAATGAA
TTAGTGTTCTTCTTTTAACTGGTAGAAATTTAGAATTAGGGTTAGGATAAATTGCAAACTGATATACTGTGAGTCGACTGTTACAGATTCTTGGGAACCTTCTGTGAGGACGAAAACTGGGTGCCCTTCTTCAACAAGACGCAGCGTTTCAGAGCGCAGATTGACGGGCAGGCGTTATTCCAAGGGCTCTGCCCTGAGAA
GATCCAGTACGTCTTATCATAATGAAATGGAGGATACCATAGAATCTGGCATCACAAAGAAGCTGCCGAACGACGGTGAAAAAGATGAGGGGAAGTTAATAAATGTGTCGGATTCCATGGCAAGGTGCAGAAGCCAAAGAGGTAAATCCGGAATGAGGGATTTGGAGATCAAGGATTCGAAAGTTAACAGTGTAATAAAC
GACTGCTTGCCCAGTAATAAGAGCAGGAAATCCATGAATTATGACTTGTAAGTTGTATTACAGTACGTGTGGTCGTCCCCATGAGCGCCGCCAAGGTGGGAAATCAAGGGTCAGCAATCTTAGAAGCTCGGTTCGGAGTTTTGTACTTCAGAGATCTGTAAAGAAATTTAGTGGTCAGGCAGCTTCATCTGAAAAGAAAG
ATGAGAGCGTTCTTGTTTATAAAGCTATGGCGGCCATAGTAGCTGGTAGAGTGTGAGAAGAGAGGCTATCTTCTTCTCCAAATCCTTTTCATGCTTAGTGTTCTTATACTTTCATGTCTCTCCACCAGCGGAATCTGTTGTCAATTGTACTGTATCACTGTATTTATTTTAGTTCTGGGACTTCTTATGTCTGGAAAATT
TGTTTATACACCCACAATACATGAATATATATATATATATACCTTCTTTGTCGCATGATTTCGTATTCGCATTGAAATTTCTGAATCACTGGATCAGTACTGGTCACAACCATCCAAATTATAATTGTAGCCACTATTTATCACAAATTGTAACCACATTTGATCAGAAATTGCCAATTGAGATCATGTCTAAAGTAATT
TGTGAAGACCTAATTAGCACACGTAACTTGTAAGGAAGGTTACATTCACAGTCACACATAAAATGTTCCACATGTAAAACTTTCAGTGTTGTTCTTTTGTGAGGAATAAATTTCCAAG