sp|O22315|SR34_ARATH ----> Serine/arginine-rich-splicing factor SR34
Intron 1 GTATGCTGAC ... GATTGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.29 | 23 | 12 | 8 |
| A2 | 26.83 | 30 | 11 | 0 |
| A3 | 21.74 | 18 | 5 | 1 |
| A4 | 18.18 | 36 | 8 | 1 |
| A5 | 19.23 | 21 | 5 | 6 |
| A6 | 25.71 | 52 | 18 | 0 |
| A7 | 30.56 | 75 | 33 | 0 |
| A8 | 23.89 | 86 | 27 | 0 |
| A9 | 27.46 | 103 | 39 | 2 |
| A10 | 26.88 | 68 | 25 | 0 |
>TRINITY_DN126957_c2_g1_i7 from sample A1 / Example spliced isoformCAGAAATTAACAATACCAGAAGGAGCAGAAGGCGAACATACGTACATAACTGAGCTTTGGAAGCCCGGATTCAAATGGATGCGATGGCAGCATACCCACCACCACAAGCGCCTGTTCCAACAAATCAACCGAATCATCCATACTACACATTTCCTCCTGCTCATCCTCATCCTCCGCCAGCACAAAACTTTACTCCGCCA
TATTACGCACCTCCGCCGGTCCAATACCCCCAACAGCAATACCATCATCATCAGAATTATTATCATAGTCAGCAGCAGCAGCAGCAGCAGCAGGAGGCATACCAGGACGAGGTCCGGACTCTATTCATAGCAGGTCTCCCGGATGACGTCAAGTATCGCGAAGTTTATAACCTTTTCCGTGAGTTCCCGGGCTACCGATC
TTGTCAGCTCAAGCATTCGGAGCGCGCAACTCAGGTGTATGCATTTACAGTCTTCACAGACCAGCAATCTGCCTTGGCAGCAATGCATGCACTAAATGGCATGGACTTCGATCCAGAGACAGGGGCAGTTTTGCACATAGATCTTGCAAAAGCCAATTCTAGGTCCAAGCGGTCTCGAACAGATGATGGAGGCTCTAGCT
CTTCTGACAAAAGAATTAGAGGACCAAATAGTGTTCCCGGAGTCTATCCAGATGCGGTGGTGGGATGATGGGGGCTGCTGTTGTTCAAGATGGTGTTCCTGGTCTGACTACAGGACAGTCAGCAGCACCTGCTGAACCAGCAAAAAATCCACCATGCCCAACTCTCTTTGTTGCCAATCTTGGGCCAACATGTTCTGAGG
AGGAGTTGACACAAGTGTTCTCAAGATGCCCAGGATTCCTCAAACTGAAGATGCAAATTAGAGGTGGATTGCCAGTTGCTTTTGTTGACTTCCAGGATATCACATCTTCCACCCAAGCTTTATATCATCTTCAAAATACTATGCTGCACTCATCTGATCGAGGTGGTATGCGTTTGGAGTATGCAAAAGCAAGGATGGGG
CTTCCAAAACGAGGGAGGAAGCCTTAGGTTTATGCGTATTATAGAAGGGTATGATGAGGAACTTTTTCCTTTCGGTAAGATTTCAAGGCTCACATTTAGCCAGGCTCATGATTCACGAGTTTACAAGGTTCTCTTGGGAATTGCAGAGTAAGGAAACAAGTGGGAATGAAATGGGTACCCTCTCATCAAACAACACAATA
ATGCTTATTCCATTCAGTTGTCATATGTGTTGTATACTAGTTTGGAGCCTTGGATACGATGAAGGGTTACATCTGCACTTTTGGTGACTAATACTTTTCTTTATTGTTCTATATATTTCTATATAATTTTTTGCTGCTAA
>TRINITY_DN126957_c2_g1_i2 from sample A1 / Example unspliced isoform:CAGAAATTAACAATACCAGAAGGAGCAGAAGGCGAACATACGTACATAACTGAGCTTTGGAAGCCCGGATTCAAATGGATGCGATGGCAGCATACCCACCACCACAAGCGCCTGTTCCAACAAATCAACCGAATCATCCATACTACACATTTCCTCCTGCTCATCCTCATCCTCCGCCAGCACAAAACTTTACTCCGCCA
TATTACGCACCTCCGCCGGTCCAATACCCCCAACAGCAATACCATCATCATCAGAATTATTATCATAGTCAGCAGCAGCAGCAGCAGCAGCAGGAGGCATACCAGGACGAGGTCCGGACTCTATTCATAGCAGGTCTCCCGGATGACGTCAAGTATCGCGAAGTTTATAACCTTTTCCGTGAGTTCCCGGGCTACCGATC
TTGTCAGCTCAAGCATTCGGAGCGCGCAACTCAGGTGTATGCATTTACAGTCTTCACAGACCAGCAATCTGCCTTGGCAGCAATGCATGCACTAAATGGCATGGACTTCGATCCAGAGACAGGGGCAGTTTTGCACATAGATCTTGCAAAAGCCAATTCTAGGTCCAAGCGGTCTCGAACAGATGATGGAGGCTCTAGCT
CTTCTGACAAAAGAATTAGAGGACCAAATAGTGTTCCCGGAGTCTATCCAGATGCGGgtatgctgacatgggcaaatcagatcctaactctacaagtctacacaaatgatatgtgttaattatatactgatgctataacatgatatgaacttgaagttatctgctgtcaataaatttgtagacgagttactgatgcatga
acatgaaatttctatcataatagctagctaagattaggtttaaactttagaatacttataagttgtaagcttgtagctatatactggattaaatccatgccaatgtttcgtccacattcagttctttgttatggtttcctttgctttcagttgaccattaaattaagcttctatagagctcttctttgttttagcaaaat
gccactggacggcttcatcacatcagcagcacatgctttagacaactcactttgcacatgtttggcacacttgcacactcacaggagttggcggcactgtgcacatgcctggaatggccaattccggttacagcgacacgagtgggtttccatccacacagaggtcaacatgcactttcttaaagcacggcattttttta
gtcacatggaggatgatattgaacatgagagattttgcaacatctgtttacttgcaatttaaagtttgaactcacgtagtaacctgctattgtttttcttgcaaggttccatgttttatccaattattttgctgaaaatatttgaattttaatgtctttaattttgccctgattgttcagTGGTGGGATGATGGGGGCTG
CTGTTGTTCAAGATGGTGTTCCTGGTCTGACTACAGTAAGTAGTATTTACCTGTTTATCCTGGTGTAAAGTTCAGTGGTAGATAAAAAAATTCTCTTTCTTGGTATAACCTTGAATGTTAATTGAAGTCATTCTTTGTGTTCTCTTAGTGCAATCTTCAAAAATATTTTCAATCCATGCTTCTCAAAGGCTTTTGGTTCT
CTCTGTTCAGTCTTACCAGGAGCAATTCAATTGATTCTATATAGTATATACCATTCTATATGTTATCAACTAAACAAGGCTGTTATTTATGTTCTCAACTAAACAAAGCTGTTTTTTATGTTCTCAACTAAGCAAAGTTGTTAGTAATTGCAGAAATTAAAATCTTC
Intron 2 GTCAACATGC ... GATTGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.67 | 14 | 11 | 13.3 |
| A2 | 28.89 | 17 | 2 | 8.7 |
| A3 | 20 | 9 | 4 | 2.3 |
| A4 | 31.43 | 6 | 1 | 3 |
| A5 | 62.43 | 4 | 4 | 6.7 |
| A6 | 19.72 | 50 | 0 | 14 |
| A7 | 16.67 | 42 | 3 | 9.3 |
| A8 | 18.04 | 62 | 2 | 15.3 |
| A9 | 23.48 | 63 | 4 | 22 |
| A10 | 21.67 | 54 | 1 | 17.3 |
>TRINITY_DN126957_c2_g1_i6 from sample A1 / Example spliced isoformCAGAAATTAACAATACCAGAAGGAGCAGAAGGCGAACATACGTACATAACTGAGCTTTGGAAGCCCGGATTCAAATGGATGCGATGGCAGCATACCCACCACCACAAGCGCCTGTTCCAACAAATCAACCGAATCATCCATACTACACATTTCCTCCTGCTCATCCTCATCCTCCGCCAGCACAAAACTTTACTCCGCCA
TATTACGCACCTCCGCCGGTCCAATACCCCCAACAGCAATACCATCATCATCAGAATTATTATCATAGTCAGCAGCAGCAGCAGCAGCAGCAGGAGGCATACCAGGACGAGGTCCGGACTCTATTCATAGCAGGTCTCCCGGATGACGTCAAGTATCGCGAAGTTTATAACCTTTTCCGTGAGTTCCCGGGCTACCGATC
TTGTCAGCTCAAGCATTCGGAGCGCGCAACTCAGGTGTATGCATTTACAGTCTTCACAGACCAGCAATCTGCCTTGGCAGCAATGCATGCACTAAATGGCATGGACTTCGATCCAGAGACAGGGGCAGTTTTGCACATAGATCTTGCAAAAGCCAATTCTAGGTCCAAGCGGTCTCGAACAGATGATGGAGGCTCTAGCT
CTTCTGACAAAAGAATTAGAGGACCAAATAGTGTTCCCGGAGTCTATCCAGATGCGGGAGTTGGCGGCACTGTGCACATGCCTGGAATGGCCAATTCCGGTTACAGCGACACGAGTGGGTTTCCATCCACACAGAGTGGTGGGATGATGGGGGCTGCTGTTGTTCAAGATGGTGTTCCTGGTCTGACTACAGGACAGTCA
GCAGCACCTGCTGAACCAGCAAAAAATCCACCATGCCCAACTCTCTTTGTTGCCAATCTTGGGCCAACATGTTCTGAGGAGGAGTTGACACAAGTGTTCTCAAGATGCCCAGGATTCCTCAAACTGAAGATGCAAATTAGAGGTGGATTGCCAGTTGCTTTTGTTGACTTCCAGGATATCACATCTTCCACCCAAGCTTT
ATATCATCTTCAAAATACTATGCTGCACTCATCTGATCGAGGTGGTATGCGTTTGGAGTATGCAAAAGCAAGGATGGGGCTTCCAAAACGAGGGAGGAAGCCTTAGGTTTATGCGTATTATAGAAGGGTATGATGAGGAACTTTTTCCTTTCGGTAAGATTTCAAGGCTCACATTTAGCCAGGCTCATGATTCACGAGTT
TACAAGGTTCTCTTGGGAATTGCAGAGTAAGGAAACAAGTGGGAATGAAATGGGTACCCTCTCATCAAACAACACAATAATGCTTATTCCATTCAGTTGTCATATGTGTTGTATACTAGTTTGGAGCCTTGGATACGATGAAGGGTTACATCTGCACTTTTGGTGACTAATACTTTTCTTTATTGTTCTATATATTTCTA
TATAATTTTTTGCTGCTAA
>TRINITY_DN126957_c2_g1_i2 from sample A1 / Example unspliced isoform:CAGAAATTAACAATACCAGAAGGAGCAGAAGGCGAACATACGTACATAACTGAGCTTTGGAAGCCCGGATTCAAATGGATGCGATGGCAGCATACCCACCACCACAAGCGCCTGTTCCAACAAATCAACCGAATCATCCATACTACACATTTCCTCCTGCTCATCCTCATCCTCCGCCAGCACAAAACTTTACTCCGCCA
TATTACGCACCTCCGCCGGTCCAATACCCCCAACAGCAATACCATCATCATCAGAATTATTATCATAGTCAGCAGCAGCAGCAGCAGCAGCAGGAGGCATACCAGGACGAGGTCCGGACTCTATTCATAGCAGGTCTCCCGGATGACGTCAAGTATCGCGAAGTTTATAACCTTTTCCGTGAGTTCCCGGGCTACCGATC
TTGTCAGCTCAAGCATTCGGAGCGCGCAACTCAGGTGTATGCATTTACAGTCTTCACAGACCAGCAATCTGCCTTGGCAGCAATGCATGCACTAAATGGCATGGACTTCGATCCAGAGACAGGGGCAGTTTTGCACATAGATCTTGCAAAAGCCAATTCTAGGTCCAAGCGGTCTCGAACAGATGATGGAGGCTCTAGCT
CTTCTGACAAAAGAATTAGAGGACCAAATAGTGTTCCCGGAGTCTATCCAGATGCGGGTATGCTGACATGGGCAAATCAGATCCTAACTCTACAAGTCTACACAAATGATATGTGTTAATTATATACTGATGCTATAACATGATATGAACTTGAAGTTATCTGCTGTCAATAAATTTGTAGACGAGTTACTGATGCATGA
ACATGAAATTTCTATCATAATAGCTAGCTAAGATTAGGTTTAAACTTTAGAATACTTATAAGTTGTAAGCTTGTAGCTATATACTGGATTAAATCCATGCCAATGTTTCGTCCACATTCAGTTCTTTGTTATGGTTTCCTTTGCTTTCAGTTGACCATTAAATTAAGCTTCTATAGAGCTCTTCTTTGTTTTAGCAAAAT
GCCACTGGACGGCTTCATCACATCAGCAGCACATGCTTTAGACAACTCACTTTGCACATGTTTGGCACACTTGCACACTCACAGGAGTTGGCGGCACTGTGCACATGCCTGGAATGGCCAATTCCGGTTACAGCGACACGAGTGGGTTTCCATCCACACAGAGgtcaacatgcactttcttaaagcacggcattttttta
gtcacatggaggatgatattgaacatgagagattttgcaacatctgtttacttgcaatttaaagtttgaactcacgtagtaacctgctattgtttttcttgcaaggttccatgttttatccaattattttgctgaaaatatttgaattttaatgtctttaattttgccctgattgttcagTGGTGGGATGATGGGGGCTG
CTGTTGTTCAAGATGGTGTTCCTGGTCTGACTACAGTAAGTAGTATTTACCTGTTTATCCTGGTGTAAAGTTCAGTGGTAGATAAAAAAATTCTCTTTCTTGGTATAACCTTGAATGTTAATTGAAGTCATTCTTTGTGTTCTCTTAGTGCAATCTTCAAAAATATTTTCAATCCATGCTTCTCAAAGGCTTTTGGTTCT
CTCTGTTCAGTCTTACCAGGAGCAATTCAATTGATTCTATATAGTATATACCATTCTATATGTTATCAACTAAACAAGGCTGTTATTTATGTTCTCAACTAAACAAAGCTGTTTTTTATGTTCTCAACTAAGCAAAGTTGTTAGTAATTGCAGAAATTAAAATCTTC
Intron 3 GTATCCTTAA ... CAAACATAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.77 | 30.2 | 9.2 | 6 |
| A2 | 19.67 | 28.6 | 2.6 | 7 |
| A3 | 25.71 | 23.2 | 3.6 | 8 |
| A4 | 29.8 | 37.8 | 3.6 | 16 |
| A5 | 36.23 | 10.6 | 2.8 | 6 |
| A6 | 25.25 | 166.8 | 25.6 | 56 |
| A7 | 23.86 | 135.8 | 28.2 | 42 |
| A8 | 24.36 | 152.6 | 15 | 49 |
| A9 | 22.41 | 126 | 31 | 36 |
| A10 | 19.59 | 107.2 | 12.8 | 26 |
>TRINITY_DN126957_c2_g1_i7 from sample A1 / Example spliced isoformCAGAAATTAACAATACCAGAAGGAGCAGAAGGCGAACATACGTACATAACTGAGCTTTGGAAGCCCGGATTCAAATGGATGCGATGGCAGCATACCCACCACCACAAGCGCCTGTTCCAACAAATCAACCGAATCATCCATACTACACATTTCCTCCTGCTCATCCTCATCCTCCGCCAGCACAAAACTTTACTCCGCCA
TATTACGCACCTCCGCCGGTCCAATACCCCCAACAGCAATACCATCATCATCAGAATTATTATCATAGTCAGCAGCAGCAGCAGCAGCAGCAGGAGGCATACCAGGACGAGGTCCGGACTCTATTCATAGCAGGTCTCCCGGATGACGTCAAGTATCGCGAAGTTTATAACCTTTTCCGTGAGTTCCCGGGCTACCGATC
TTGTCAGCTCAAGCATTCGGAGCGCGCAACTCAGGTGTATGCATTTACAGTCTTCACAGACCAGCAATCTGCCTTGGCAGCAATGCATGCACTAAATGGCATGGACTTCGATCCAGAGACAGGGGCAGTTTTGCACATAGATCTTGCAAAAGCCAATTCTAGGTCCAAGCGGTCTCGAACAGATGATGGAGGCTCTAGCT
CTTCTGACAAAAGAATTAGAGGACCAAATAGTGTTCCCGGAGTCTATCCAGATGCGGTGGTGGGATGATGGGGGCTGCTGTTGTTCAAGATGGTGTTCCTGGTCTGACTACAGGACAGTCAGCAGCACCTGCTGAACCAGCAAAAAATCCACCATGCCCAACTCTCTTTGTTGCCAATCTTGGGCCAACATGTTCTGAGG
AGGAGTTGACACAAGTGTTCTCAAGATGCCCAGGATTCCTCAAACTGAAGATGCAAATTAGAGGTGGATTGCCAGTTGCTTTTGTTGACTTCCAGGATATCACATCTTCCACCCAAGCTTTATATCATCTTCAAAATACTATGCTGCACTCATCTGATCGAGGTGGTATGCGTTTGGAGTATGCAAAAGCAAGGATGGGG
CTTCCAAAACGAGGGAGGAAGCCTTAGGTTTATGCGTATTATAGAAGGGTATGATGAGGAACTTTTTCCTTTCGGTAAGATTTCAAGGCTCACATTTAGCCAGGCTCATGATTCACGAGTTTACAAGGTTCTCTTGGGAATTGCAGAGTAAGGAAACAAGTGGGAATGAAATGGGTACCCTCTCATCAAACAACACAATA
ATGCTTATTCCATTCAGTTGTCATATGTGTTGTATACTAGTTTGGAGCCTTGGATACGATGAAGGGTTACATCTGCACTTTTGGTGACTAATACTTTTCTTTATTGTTCTATATATTTCTATATAATTTTTTGCTGCTAA
>TRINITY_DN126957_c2_g1_i8 from sample A1 / Example unspliced isoform:GATAGGGTTGCTGTTCTCATGTAATTAATTTAGTGAAGAAGGATATGGGTTTCTTTCTGCCAAATGTGGTTAAGGTTTTCCTCAATCGGAGTCTTAATATTTATTTTTCTGTAACTGTTTAGTTGATTCTGGAATATTGATACATTGTTCTGTTTCTATGCAGGATATCACATCTTCCACCCAAGCTTTATATCATCTTC
AAAATACTATGCTGCACTCATCTGATCGAGGTGGTATGCGTTTGGAgtatccttaatacttttatttttcgcaatttattttgtaatcttttgtaatttttctgcaattcgcacagtgcccatgttatgtttaaattccatttgcaagtcagaaaaagagggtgaacttaaccaaacataagGTATGCAAAAGCAAGGAT
GGGGCTTCCAAAACGAGGGAGGAAGCCTTAGGTTTATGCGTATTATAGAAGGGTATGATGAGGAACTTTTTCCTTTCGGTAAGATTTCAAGGCTCACATTTAGCCAGGCTCATGATTCACGAGTTTACAAGGTTCTCTTGGGAATTGCAGAGTAAGGAAACAAGTGGGAATGAAATGGGTACCCTCTCATCAAACAACAC
AATAATGCTTATTCCATTCAGTTGTCATATGTGTTGTATACTAGTTTGGAGCCTTGGATACGATGAAGGGTTACATCTGCACTTTTGGTGACTAATACTTTTCTTTATTGTTCTATATATTTCTATATAATTTTTTGCTGCTAA
Intron 4 GTATGATGAG ... GGAATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.34 | 10.4 | 21 | 25 |
| A2 | 70.11 | 9.2 | 19.8 | 21 |
| A3 | 89.79 | 2.4 | 16 | 18 |
| A4 | 73.74 | 8 | 26.8 | 17 |
| A5 | 74.94 | 4.8 | 18.4 | 10 |
| A6 | 78.35 | 61.6 | 185 | 230 |
| A7 | 73.76 | 55.2 | 125 | 163 |
| A8 | 80.19 | 58.4 | 171.2 | 249 |
| A9 | 79.92 | 46.6 | 136.6 | 204 |
| A10 | 81.51 | 26.4 | 110.8 | 111 |
>TRINITY_DN104117_c6_g1_i5 from sample A4 / Example spliced isoformGGAACACTATTTGGTCCTCCAATTCTAGGTCCAAGCGGTCTCGAACAGATGATGGAGGCTCTAGCTCTTCTGACAAAAGAATTAGAGGACCAAATAGTGTTCCCGGAGTCTATCCAGATGCGGTGGTGGGATGATGGGGGCTGCTGTTGTTCAAGATGGTGTTCCTGGTCTGACTACAGGACAGTCAGCAGCACCTGCTG
AACCAGCAAAAAATCCACCATGCCCAACTCTCTTTGTTGCCAATCTTGGGCCAACATGTTCTGAGGAGGAGTTGACACAAGTGTTCTCAAGATGCCCAGGATTCCTCAAACTGAAGATGCAAATTAGAGGTGGATTGCCAGTTGCTTTTGTTGACTTCCAGGATATCACATCTTCCACCCAAGCTTTATATCATCTTCAA
AATACTATGCTGCACTCATCTGATCGAGGTGGTATGCGTTTGGAGTATGCAAAAGCAAGGATGGGGCTTCCAAACGAGGGAGGAAGCCTTAGGTTTATGCGTATTATAGAAGGAGTAAGGAAACAAGTGGG
>TRINITY_DN104117_c6_g1_i2 from sample A4 / Example unspliced isoform:CTTAACCAAACATAAGGTATGCAAAAGCAAGGATGGGGCTTCCAAAACGAGGGAGGAAGCCTTAGGTTTATGCGTATTATAGAAGGgtatgatgaggaactttttcctttcggtaagatttcaaggctcacatttagccaggctcatgattcacgagtttacaaggttctcttgggaattgcagAGTAAGGAAACAAGTG
GGAATGAAATGGGTACCCTCTCATCAAACAACACAATAATGCTTATTCCATTCAGTTGTCATATGTGTTGTATACTAGTTTGGAGCCTTGGATACGATGAAGGGTTACATCTGCACTTTTGGTGACTAATACTTTTCTTTATTGTTCTATATATTTCTATATAATTTTTTGCTG
Intron 5 GTATGCTGAC ... ACACTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40 | 18 | 12 | 13 |
| A2 | 37.93 | 18 | 11 | 1 |
| A3 | 38.46 | 8 | 5 | 2 |
| A4 | 38.1 | 13 | 8 | 1 |
| A5 | 62.5 | 3 | 5 | 3 |
| A6 | 27.27 | 48 | 18 | 1 |
| A7 | 36.67 | 57 | 33 | 2 |
| A8 | 29.67 | 64 | 27 | 0 |
| A9 | 34.82 | 73 | 39 | 9 |
| A10 | 29.76 | 59 | 25 | 1 |
>TRINITY_DN126957_c2_g1_i6 from sample A1 / Example spliced isoformCAGAAATTAACAATACCAGAAGGAGCAGAAGGCGAACATACGTACATAACTGAGCTTTGGAAGCCCGGATTCAAATGGATGCGATGGCAGCATACCCACCACCACAAGCGCCTGTTCCAACAAATCAACCGAATCATCCATACTACACATTTCCTCCTGCTCATCCTCATCCTCCGCCAGCACAAAACTTTACTCCGCCA
TATTACGCACCTCCGCCGGTCCAATACCCCCAACAGCAATACCATCATCATCAGAATTATTATCATAGTCAGCAGCAGCAGCAGCAGCAGCAGGAGGCATACCAGGACGAGGTCCGGACTCTATTCATAGCAGGTCTCCCGGATGACGTCAAGTATCGCGAAGTTTATAACCTTTTCCGTGAGTTCCCGGGCTACCGATC
TTGTCAGCTCAAGCATTCGGAGCGCGCAACTCAGGTGTATGCATTTACAGTCTTCACAGACCAGCAATCTGCCTTGGCAGCAATGCATGCACTAAATGGCATGGACTTCGATCCAGAGACAGGGGCAGTTTTGCACATAGATCTTGCAAAAGCCAATTCTAGGTCCAAGCGGTCTCGAACAGATGATGGAGGCTCTAGCT
CTTCTGACAAAAGAATTAGAGGACCAAATAGTGTTCCCGGAGTCTATCCAGATGCGGGAGTTGGCGGCACTGTGCACATGCCTGGAATGGCCAATTCCGGTTACAGCGACACGAGTGGGTTTCCATCCACACAGAGTGGTGGGATGATGGGGGCTGCTGTTGTTCAAGATGGTGTTCCTGGTCTGACTACAGGACAGTCA
GCAGCACCTGCTGAACCAGCAAAAAATCCACCATGCCCAACTCTCTTTGTTGCCAATCTTGGGCCAACATGTTCTGAGGAGGAGTTGACACAAGTGTTCTCAAGATGCCCAGGATTCCTCAAACTGAAGATGCAAATTAGAGGTGGATTGCCAGTTGCTTTTGTTGACTTCCAGGATATCACATCTTCCACCCAAGCTTT
ATATCATCTTCAAAATACTATGCTGCACTCATCTGATCGAGGTGGTATGCGTTTGGAGTATGCAAAAGCAAGGATGGGGCTTCCAAAACGAGGGAGGAAGCCTTAGGTTTATGCGTATTATAGAAGGGTATGATGAGGAACTTTTTCCTTTCGGTAAGATTTCAAGGCTCACATTTAGCCAGGCTCATGATTCACGAGTT
TACAAGGTTCTCTTGGGAATTGCAGAGTAAGGAAACAAGTGGGAATGAAATGGGTACCCTCTCATCAAACAACACAATAATGCTTATTCCATTCAGTTGTCATATGTGTTGTATACTAGTTTGGAGCCTTGGATACGATGAAGGGTTACATCTGCACTTTTGGTGACTAATACTTTTCTTTATTGTTCTATATATTTCTA
TATAATTTTTTGCTGCTAA
>TRINITY_DN126957_c2_g1_i2 from sample A1 / Example unspliced isoform:CAGAAATTAACAATACCAGAAGGAGCAGAAGGCGAACATACGTACATAACTGAGCTTTGGAAGCCCGGATTCAAATGGATGCGATGGCAGCATACCCACCACCACAAGCGCCTGTTCCAACAAATCAACCGAATCATCCATACTACACATTTCCTCCTGCTCATCCTCATCCTCCGCCAGCACAAAACTTTACTCCGCCA
TATTACGCACCTCCGCCGGTCCAATACCCCCAACAGCAATACCATCATCATCAGAATTATTATCATAGTCAGCAGCAGCAGCAGCAGCAGCAGGAGGCATACCAGGACGAGGTCCGGACTCTATTCATAGCAGGTCTCCCGGATGACGTCAAGTATCGCGAAGTTTATAACCTTTTCCGTGAGTTCCCGGGCTACCGATC
TTGTCAGCTCAAGCATTCGGAGCGCGCAACTCAGGTGTATGCATTTACAGTCTTCACAGACCAGCAATCTGCCTTGGCAGCAATGCATGCACTAAATGGCATGGACTTCGATCCAGAGACAGGGGCAGTTTTGCACATAGATCTTGCAAAAGCCAATTCTAGGTCCAAGCGGTCTCGAACAGATGATGGAGGCTCTAGCT
CTTCTGACAAAAGAATTAGAGGACCAAATAGTGTTCCCGGAGTCTATCCAGATGCGGgtatgctgacatgggcaaatcagatcctaactctacaagtctacacaaatgatatgtgttaattatatactgatgctataacatgatatgaacttgaagttatctgctgtcaataaatttgtagacgagttactgatgcatga
acatgaaatttctatcataatagctagctaagattaggtttaaactttagaatacttataagttgtaagcttgtagctatatactggattaaatccatgccaatgtttcgtccacattcagttctttgttatggtttcctttgctttcagttgaccattaaattaagcttctatagagctcttctttgttttagcaaaat
gccactggacggcttcatcacatcagcagcacatgctttagacaactcactttgcacatgtttggcacacttgcacactcacagGAGTTGGCGGCACTGTGCACATGCCTGGAATGGCCAATTCCGGTTACAGCGACACGAGTGGGTTTCCATCCACACAGAGGTCAACATGCACTTTCTTAAAGCACGGCATTTTTTTA
GTCACATGGAGGATGATATTGAACATGAGAGATTTTGCAACATCTGTTTACTTGCAATTTAAAGTTTGAACTCACGTAGTAACCTGCTATTGTTTTTCTTGCAAGGTTCCATGTTTTATCCAATTATTTTGCTGAAAATATTTGAATTTTAATGTCTTTAATTTTGCCCTGATTGTTCAGTGGTGGGATGATGGGGGCTG
CTGTTGTTCAAGATGGTGTTCCTGGTCTGACTACAGTAAGTAGTATTTACCTGTTTATCCTGGTGTAAAGTTCAGTGGTAGATAAAAAAATTCTCTTTCTTGGTATAACCTTGAATGTTAATTGAAGTCATTCTTTGTGTTCTCTTAGTGCAATCTTCAAAAATATTTTCAATCCATGCTTCTCAAAGGCTTTTGGTTCT
CTCTGTTCAGTCTTACCAGGAGCAATTCAATTGATTCTATATAGTATATACCATTCTATATGTTATCAACTAAACAAGGCTGTTATTTATGTTCTCAACTAAACAAAGCTGTTTTTTATGTTCTCAACTAAGCAAAGTTGTTAGTAATTGCAGAAATTAAAATCTTC
Intron 6 GTATGTATGG ... CTTTGATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.59 | 17.5 | 8 | 6 |
| A2 | 28.57 | 25 | 7 | 13 |
| A3 | 28.66 | 19 | 13 | 2 |
| A4 | 22.3 | 26.5 | 11 | 4 |
| A5 | 23.18 | 6.5 | 2 | 1 |
| A6 | 21.64 | 58.5 | 17 | 15 |
| A7 | 12.21 | 72 | 13 | 7 |
| A8 | 14.12 | 70 | 12 | 11 |
| A9 | 12.68 | 93 | 17 | 10 |
| A10 | 20.02 | 76 | 24 | 14 |
>TRINITY_DN109987_c2_g2_i3 from sample A3 / Example spliced isoformCAGCAGCAGCAGCAGCAGCAGCAGGAGGCATACCAGGACGAGGTCCGGACTCTATTCATAGCAGGTCTCCCGGATGACGTCAAGTATCGCGAAGTTTATAACCTTTTCCGTGAGTTCCCGGGCTACCGATCTTGTCAGCTCAAGCATTCGGAGCGCGCAACTCAGGTGTATGCATTTACAGTCTTCACAGACCAGCAATC
TGCCTTGGCAGCAATGCATGCACTAAATGGCATGGACTTCGATCCAGAGACAGGGGCAGTTTTGCACATAGATCTTGCAAAAGCCAATTCTAGGTCCAAGCGGTCTCGAACAGATGATGGAGGCTCTAGCTCTTCTGACAAAAGAATTAGAGGACCAAATAGTGTTCCCGGAGTCTATCCAGATGCGGTGGTGGGATGAT
GGGGGCTGCTGTTGTTCAAGATGGTGTTCCTGGTCTGACTACAGGACAGTCAGCAGCACCTGCTGAACCAGCAAAAAATCCACCATGCCCAACTCTCTTTGTTGCCAATCTTGGGCCAACATGTTCTGAGGAGGAGTTGACACAAGTGTTCTCAAGATGCCCAGGATTCCTCAAACTGAAGATGCAAATTAGAGGTGGAT
TGCCAGTTGCTTTTGTTGACTTCCAGGATATCACATCTTCCACCCAAGCTTTATATCATCTTCAAAATACTATGCTGCACTCATCTGATCGAGGTGGTATGCGTTTGGAGTATGCAAAAGCAAGGATGGGGCTTCCAAAACGAGGGAGGAAGCCTTAGGTTTATGCGTATTATAGAAGGGTATGATGAGGAACTTTTTCC
TTTCGGTAAGATTTCAAGGCTCACATTTAGCCAGGCTCATGATTCACGAGTTTACAAGGTTCTCTTGGGAATTGCAGAGTAAGGAAACAAGTGGGAATGAAATGGGTACCCTCTCATCAAACAACACAATAATGCTTATTCCATTCAGTTGTCATATGTGTTGTATACTAGTTTGGAGCCTTGGATACGATGAAGGGTTA
CATCTGCACTTTTGGTGACTAATACTTTTCTTTATTGTTCTATATATTTCTATATAATTTTTTGCTGCTACTTTAACTTAATATTTAGAGTTTTATGCCTTTTTACTTGCATGATTTTTGATAAAATGGTGGAACAGGAAAATACTTTGTCTTGAACATATAAAATTAATGCAGTTGATTTTTCAAGTGCATATTTATCA
CCAGGGTTTTATCATTTGTCAGTATAGGCTGAAGACATATATTAC
>TRINITY_DN109987_c2_g2_i6 from sample A3 / Example unspliced isoform:CAGCAGCAGCAGCAGCAGCAGCAGGAGGCATACCAGGACGAGGTCCGGACTCTATTCATAGCAGGTCTCCCGGATGACGTCAAGTATCGCGAAGTTTATAACCTTTTCCGTGAGTTCCCGGGCTACCGATCTTGTCAGCTCAAGCATTCGGAGCGCGCAACTCAGGTGTATGCATTTACAGTCTTCACAGACCAGCAATC
TGCCTTGGCAGCAATGCATGCACTAAATGGCATGGACTTCGATCCAGAGACAGGGGCAGTTTTGCACATAGATCTTGCAAAAGCCAATTCTAGGTCCAAGCGGTCTCGAACAGgtatgtatggtttgtggtagaagtttctagctaattatgtaacaatgccattgaaggggcaatggatgtttatggagtagcttttgc
attggcttgttttaagatacaaactaagttttgtaagaacacgattgaagagggaatggtatttctgtagtagtcgttgcatcattctactttaagttatacagttaatcagataatatcctcaagggctttttgcaagcgaaatagaatatggaataactaacaattttgcctcatcttcctttgatcagATGATGGAG
GCTCTAGCTCTTCTGACAAAAGAATTAGAGGACCAAATAGTGTTCCCGGAGTCTATCCAGATGCGGGAGTTGGCGGCACTGTGCACATGCCTGGAATGGCCAATTCCGGTTACAGCGACACGAGTGGGTTTCCATCCACACAGAGTGGTGGGATGATGGGGGCTGCTGTTGTTCAAGATGGTGTTCCTGGTCTGACTACA
GGACAGTCAGCAGCACCTGCTGAACCAGCAAAAAATCCACCATGCCCAACTCTCTTTGTTGCCAATCTTGGGCCAACATGTTCTGAGGAGGAGTTGACACAAGTGTTCTCAAGATGCCCAGGATTCCTCAAACTGAAGATGCAAATTAGAGGTGGATTGCCAGTTGCTTTTGTTGACTTCCAGGATATCACATCTTCCAC
CCAAGCTTTATATCATCTTCAAAATACTATGCTGCACTCATCTGATCGAGGTGGTATGCGTTTGGAGTATGCAAAAGCAAGGATGGGGCTTCCAAAACGAGGGAGGAAGCCTTAGGTTTATGCGTATTATAGAAGGGTATGATGAGGAACTTTTTCCTTTCGGTAAGATTTCAAGGCTCACATTTAGCCAGGCTCATGAT
TCACGAGTTTACAAGGTTCTCTTGGGAATTGCAGAGTAAGGAAACAAGTGGGAATGAAATGGGTACCCTCTCATCAAACAACACAATAATGCTTATTCCATTCAGTTGTCATATGTGTTGTATACTAGTTTGGAGCCTTGGATACGATGAAGGGTTACATCTGCACTTTTGGTGACTAATACTTTTCTTTATTGTTCTAT
ATATTTCTATATAATTTTTTGCTGCTACTTTAACTTAATATTTAGAGTTTTATGCCTTTTTACTTGCATGATTTTTGATAAAATGGTGGAACAGGAAAATACTTTGTCTTGAACATATAAAATTAATGCAGTTGATTTTTCAAGTGCATATTTATCACCAGGGTTTTATCATTTGTCAGTATAGGCTGAAGACATATATT
AC