NA ----> NA
Intron 1 GTAAGTCACG ... AATTGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 1 | 1 |
| A2 | 60 | 4 | 0 | 6 |
| A3 | 100 | 0 | 0 | 4 |
| A4 | 66.67 | 2 | 0 | 4 |
| A5 | 57.14 | 3 | 2 | 4 |
| A6 | 80.95 | 4 | 0 | 17 |
| A7 | 72.41 | 8 | 3 | 21 |
| A8 | 76.92 | 3 | 3 | 10 |
| A9 | 64.29 | 5 | 3 | 9 |
| A10 | 72.73 | 3 | 0 | 8 |
>TRINITY_DN40412_c0_g1_i1 from sample A7 / Example spliced isoformGGCCATTTGAACCACTAAGGCTCAGAACCCGTCGGACCGGCCGGTTTTACTGGTTCCGATCCTGTTCATGTAACAAGTAACAATCGTCATAAGTTCCAGGGAATCGCGTTTGAGACAATGCATACCAAAGTTTTGATGGAAAAGGAGAGGAATGATAGAAAAAACGCGTCGGTTGAGAAAAAGGAAGAAGAAAATAGCAG
GAGGAAGCGCTATATCATGGCTGCAAGAACGCGGGCAGTAGTCGCTCTCATCTTCATCACCATCCTCGTAATGCTTTCTTCTTATTCAGTTCAGGCATTGACGGATTTTGAGGGACGAAAGATCGCCAGGATGAGAAGCGCTTATGAGCACACACAGCGGAGGAGCGAAATGGAAGCCGTTGCAGAGTCGACGAGGAGGC
CGGAACAGGCGCCACCATCGCCCACAGCTAACGTCAACTTCCCTGGCCCTGATCCCTCACCCGGCACCAAGTGACTATTCCACCGTCAATAGCCTACAGGTATTATATATATCCATGGTCACCGATAAGCCATTTGATCGATCTGTTCCGCCACCGCCGGTGTCATGAAAGTGTGTAAATCGTGAGGCCCGATCATTAAT
AATAATATTGAATTCAGAGGTTATTGCTTTGAACTGTGAAATACCATGTCAGAGAAAATTTGAGGCTCATCTTATCTTGGTTTATTGTTTTGATATGTGAAATACTCTGCTCATGAAAATTTGAAGTCAAATGCCTAGAGCCATTTCGGGTTAAATAAAGAATGAAATGTCCCATTTTGTACTCTGATAAATGCTTTGAA
ACCCTAAATTTCAGGGCATTTTGAAGGCATAGAATGAATCCACTTCAATGACTGCTAACAAA
>TRINITY_DN40412_c0_g1_i2 from sample A7 / Example unspliced isoform:GGCCATTTGAACCACTAAGGCTCAGAACCCGTCGGACCGGCCGGTTTTACTGGTTCCGATCCTGTTCATGTAACAAGTAACAATCGTCATAAGTTCCAGGGAATCGCGTTTGAGACAATGCATACCAAAGTTTTGATGGAAAAGGAGAGGAATGATAGAAAAAACGCGTCGGTTGAgtaagtcacgtatgaaacacgcta
cacgaaagttttcctcgaaaggaggaagaattgtagaaaaaacgcttggcttgaattggataactatgatcatggcagatatatcattaaaaaagatggccagtgctgtttgtttattgccagaaattggtcaaagctgtggagtcgcgatttggtagaaagcttttaatagcctctgtctagatccaaacaattgaaca
gGAAAAAGGAAGAAGAAAATAGCAGGAGGAAGCGCTATATCATGGCTGCAAGAACGCGGGCAGTAGTCGCTCTCATCTTCATCACCATCCTCGTAATGCTTTCTTCTTATTCAGTTCAGGCATTGACGGATTTTGAGGGACGAAAGATCGCCAGGATGAGAAGCGCTTATGAGCACACACAGCGGAGGAGCGAAATCGAA
GTAGGGAAGGTGGAAGCCGTTGCAGAGTCGACGAGGAGGCCGGAACAGGCGCCACCATCGCCCACAGCTAACGTCAACTTCCCTGGCCCTGATCCCTCACCCGGCACCAAGTGACTATTCCACCGTCAATAGCCTACAGGTATTATATATATCCATGGTCACCGATAAGCCATTTGATCGATCTGTTCCGCCACCGCCGG
TATCATGAAAGTGTGTACTTTGCCAGGCCCGATCATTAATAATAATATTGAATTCAGAGGTTATTGCTTTGAACTGTGAAATACCATGTCAGAGAAAATTTGAGGCTCATCTTATCTTGGTTTATTGTTTTGATATGTGAAATACTCTGCTCATGAAAATTTGAAGTCAAATGCCTAGAGCCATTTCGGGTTAAATAAAG
AATGAAATGTCCCATTTTGTACTCTGATAAATGCTTTGAAACCCTAAATTTCAGGGCATTTTGAAGGCATAGAATGAATCCACTTCAATGACTGCTAACAAA
Intron 2 GTAAGTCACG ... GATTGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 1 | 0 |
| A2 | 60 | 4 | 0 | 6 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | 66.67 | 2 | 0 | 4 |
| A5 | 25 | 3 | 2 | 1 |
| A6 | 71.43 | 4 | 0 | 10 |
| A7 | 52.94 | 8 | 3 | 9 |
| A8 | 70 | 3 | 3 | 7 |
| A9 | 64.29 | 5 | 3 | 9 |
| A10 | 57.14 | 3 | 0 | 4 |
>TRINITY_DN40412_c0_g1_i1 from sample A7 / Example spliced isoformGGCCATTTGAACCACTAAGGCTCAGAACCCGTCGGACCGGCCGGTTTTACTGGTTCCGATCCTGTTCATGTAACAAGTAACAATCGTCATAAGTTCCAGGGAATCGCGTTTGAGACAATGCATACCAAAGTTTTGATGGAAAAGGAGAGGAATGATAGAAAAAACGCGTCGGTTGAGAAAAAGGAAGAAGAAAATAGCAG
GAGGAAGCGCTATATCATGGCTGCAAGAACGCGGGCAGTAGTCGCTCTCATCTTCATCACCATCCTCGTAATGCTTTCTTCTTATTCAGTTCAGGCATTGACGGATTTTGAGGGACGAAAGATCGCCAGGATGAGAAGCGCTTATGAGCACACACAGCGGAGGAGCGAAATGGAAGCCGTTGCAGAGTCGACGAGGAGGC
CGGAACAGGCGCCACCATCGCCCACAGCTAACGTCAACTTCCCTGGCCCTGATCCCTCACCCGGCACCAAGTGACTATTCCACCGTCAATAGCCTACAGGTATTATATATATCCATGGTCACCGATAAGCCATTTGATCGATCTGTTCCGCCACCGCCGGTGTCATGAAAGTGTGTAAATCGTGAGGCCCGATCATTAAT
AATAATATTGAATTCAGAGGTTATTGCTTTGAACTGTGAAATACCATGTCAGAGAAAATTTGAGGCTCATCTTATCTTGGTTTATTGTTTTGATATGTGAAATACTCTGCTCATGAAAATTTGAAGTCAAATGCCTAGAGCCATTTCGGGTTAAATAAAGAATGAAATGTCCCATTTTGTACTCTGATAAATGCTTTGAA
ACCCTAAATTTCAGGGCATTTTGAAGGCATAGAATGAATCCACTTCAATGACTGCTAACAAA
>TRINITY_DN40412_c0_g1_i3 from sample A7 / Example unspliced isoform:GGCCATTTGAACCACTAAGGCTCAGAACCCGTCGGACCGGCCGGTTTTACTGGTTCCGATCCTGTTCATGTAACAAGTAACAATCGTCATAAGTTCCAGGGAATCGCGTTTGAGACAATGCATACCAAAGTTTTGATGGAAAAGGAGAGGAATGATAGAAAAAACGCGTCGGTTGAgtaagtcacgtatgaaacacgcta
cacgaaagttttcctcgaaaggaggaagaattgtagaaaaaacgcttggcttgaattggataactatgatcatggcagatatatcattaaaaaagatggccagtgctgtttgtttattgccagaaattggtcaaagctgtggagtcgcgatttggtgaaagtttttaatagcttaaaaaaattgatcaatgatatggact
ctggagtcatgatttagtaggaagcttttaatagcttttgtctagatccaaacatttctccctgagtgatccgatctctcgattgaacagGAAAAAGGAAGAAGAAAATAGCAGGAGGAAGCGCTATATCATGGCTGCAAGAACGCGGGCAGTAGTCGCTCTCATCTTCATCACCATCCTCGTAATGCTTTCTTCTTATT
CAGTTCAGGCATTGACGGATTTTGAGGGACGAAAGATCGCCAGGATGAGAAGCGCTTATGAGCACACACAGCGGAGGAGCGAAATGGAAGCCGTTGCAGAGTCGACGAGGAGGCCGGAACAGGCGCCACCATCGCCCACAGCTAACGTCAACTTCCCTGGCCCTGATCCCTCACCCGGCACCAAGTGACTATTCCACCGT
CAATAGCCTACAGGTATTATATATATCCATGGTCACCGATAAGCCATTTGATCGATCTGTTCCGCCACCGCCGGTGTCATGAAAGTGTGTAAATCGTGAGGCCCGATCATTAATAATAATATTGAATTCAGAGGTTATTGCTTTGAACTGTGAAATACCATGTCAGAGAAAATTTGAGGCTCATCTTATCTTGGTTTATT
GTTTTGATATGTGAAATACTCTGCTCATGAAAATTTGAAGTCAAATGCCTAGAGCCATTTCGGGTTAAATAAAGAATGAAATGTCCCATTTTGTACTCTGATAAATGCTTTGAAACCCTAAATTTCAGGGCATTTTGAAGGCATAGAATGAATCCACTTCAATGACTGCTAACAAA