sp|Q4V398|RRT1_ARATH ----> Rhamnogalacturonan I rhamnosyltransferase 1
Intron 1 GTATGCGTAT ... GGTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 53.33 | 7 | 8 | 8 |
| A2 | 100 | 0 | 5 | 21 |
| A3 | 53.33 | 14 | 17 | 15 |
| A4 | 52.38 | 5 | 9 | 2 |
| A5 | 100 | 0 | 0 | 2 |
| A6 | 75 | 2 | 6 | 6 |
| A7 | 77.78 | 3 | 8 | 13 |
| A8 | 75 | 3 | 5 | 13 |
| A9 | 65.22 | 4 | 5 | 10 |
| A10 | 80 | 1 | 4 | 4 |
>TRINITY_DN38981_c0_g2_i1 from sample A9 / Example spliced isoformCTAAATCTGCGGCGCATGTGTTGAGGTCGAGCGTTCGAATCGCAGAGGGGAATGTATTTTCATCGTTTCATTGTTTTGTTGTTGCTGCTGCATTAAAACGCCAACGCCACTGATTGGGACACTTGGCAGGACAACGGTCGTCCATTGGCTCCGGCATGAAAGGGGTTTAGGAGTTTCAGTTCCCGGGACATGAAAATCCA
GCGTCTGAGTCGGTAAAATCGGGGTTAGCCAGGTCGATTCTGTGAATCCCGCTGTGTTCGTTCGGTGGTGATTGTTGACAGGTAAGAAGGGAGGAAAGGGGACCCTGGAGAGAAATAAATTTGAGGCCTCGAGGGGGTGGGCGTTGAAGCGGGTCAGGAGCCGTAAAGGATTCGAACCTCGAACCTCTGCATTCATTTAC
GCATTAACTATGGAGGCATCTCTTCGCTGCCCAACCGACATTTTGCAATGCTTGAATCGTGAATTTGTAGCGATGGTGCTGTGAATAGACGGGAGGGATCTTTGAAACTCGCAATGGCAGAGGTCGTGAATTTTCTTGTATGACGGCGGAGTTTCGAAAACGTGACGTCACGCGGCCGAGGCCTGGGGTGATTAAAACCA
ACTGCTTGGCTTCGGCTTTTCGTGGAACCCTGTTCGAATCCCATAAGAGTATGCAAAATAGGAAAAGAGAGGAAAGTACGGGTGGTGGAAATGTGCAAAGGAGAGCCCGCGACTGAGAAGGGGAACTCCAAGGGTTTGCGAGGGCAGATGGGATTGAAATGCCTGGTGGCTGGGGGTCAGATGAAGGCCGAGAAATTCAG
ACATTCAGCGATAGCCCATCCTCGTTCTCGCACCCAGGTTTGGATTATTCGTGTCACGTCAACGTTCTTGATCTGGACATGCGCGATTCAGCTCACTGCGCTGGGAGAATTATGGGGGTCTCGCGTGCTTAAAGGCCTGCCCTCTTGCTTTACTCATCCCGATGAATCCTCTCAAACATTCTTGACCCAGAAATCGGCCG
CCCTCCAGAAGATCGTTCTGCCACCAAAGAGAGTGTATAAAAACAATGGTTATCTTCTGGTGTCTTGCAATGGAGGCCTAAATCAGATGCGAGCAGCGATATGCGACATGGTTGCTATTGCAAGGTATCTTAATGTGACATTGGTTGTACCAGAACTGGACAAAACATCATTCTGGGCAGATCCAAGTGAATTCAAAGAC
ATATTTGATGTTGATCACTTTATTACATCTTTGAGAGATGAAGTTCGAATACTCAAAGAACTTCCCCCAAGACTAAAGAACAGAGTACAGCAGAGAATGGTACCTTCCATGCCTCCTGTGAGCTGGTCAAACATATCGTACTACCTTCATCAGATTCTTCCACTGATACAGAAATACAAAGTTCTGCATTTGAACAAGAC
AGATGCACGGCTAGCTAATAATGGTTTGCCATTAGAGATCCAAAAGCTACGTTGCCGTGCAAATTACCATGCTCTTCGGTTTACTGCACAAATTGAAGAGTTAGGCCGAAGGCTCTTAAAAATATTGAGCGAAAATGGGCCATTTTTGGTCTTACATCTTCGGTATGAAATGGATATGCTGGCTTTCTCTGGCTGTACTC
ATGGTTGTAGTGATGGAGAGGCTGAGGAACTCACCAGAATGAGGCACTTCATTTTGATAAAAATATGCAGATTTATATTGCAGCTGGTGAAATATATGGTGGAGAAAGGAGGATGTCCACCCTATCCGCAGCTTATCCCAAAATGGTTAGAAAAGAAATGCTTCTTAATCCTGAGGATTTGAGGCCTTTCCAAAATCACT
CATCCCAAATGGCTGCCCTGGATTACATCGTCTCTCGAGAGAGTGATGTGTTTGTTCCAACATATGATGGAAATATGGCAAAAGTTGTTGAAGGGCACCGAAGATTCTTAGGATTTCGGAAAACAATCTTGTTGGACAGGAAACGTCTGGTTGGACTTTTTGACCAATATAACAATGGGACCTTAAATTGGGATGAATTT
GCCCGTGCTGTTAATGAAGTACATGCAGACCGGATGGGAGAACCAACAAAAAGAATAGCTATTCCTGATAGACCAAAGGAAGAGGACTATTTCTATGCAAATCCGGAGGAATGTTTGCAACAGCCGCTTGATCTTGAACACAATTCCTTTTAGTTCTTTTCATTATTTTATTATTTACCACTGGAGTCTCTTGTTCCTAC
AAGAGGGACTATTTCAGTTTTAGATGATCTCCAGAAATCCATCTGCTCAGTTATATTAATGCTTCGGAGGATTCATGGTTTTTTCATCCCTTAAAGAGCGTTCTTTAGATTATTTTCAGAAAAGTCAGAGCTAAGACATCTCTGAGAATATAAAGATGGGTGCCTTCATGAGCCTTACTCTCAGATGTCATATGCGCATA
TGTATTCAACTGAAAGTAAAGGAGTGTTCTTTTGTTGCAGAGTTCACCATAGTTGCGGGTTGGTATAACATCATCTTGCTGAGTAAAGCAAACCTGTATTTATAGCTAGGATAATCTATTTTTCCTCAATCAGAGTCTTACTTGACGGGCTGCATCATTGTGTACAGTTCTCAACATGGTGCCAGAGAAGGTATAATCAC
ACACAATCAAATGTGTGGATTCTGGAAGACAGCTAGAAACATACGAAATTTAATGTATTGATTGTCGGATCACATCTAGAGGCATTGTCCATTACTGGAGCTAGATGGCATTGTCTTGGATGAATACAAGAGAAAGGTTCCATCTCTTGATATCTTGTTATTGAACTAGACCTAGTAAGTACCATTGGTTGTTACACTAT
GCAATAAAAATCACCTAAGCACTCTGCTGCTTTTACAGAAACTCCATATTGACACTAGTACTTGAAAAATTTGAGATTTCCACTGCTACCCATATGTATATGAGCGGAAAATTGTCTTTACTGAAACATTGATTTTTTAAAGTTGCATTAAGCTCTGTTACATTCTTAAATTCAAGTCGAA
>TRINITY_DN38981_c0_g2_i2 from sample A9 / Example unspliced isoform:CTAAATCTGCGGCGCATGTGTTGAGGTCGAGCGTTCGAATCGCAGAGGGGAATGTATTTTCATCGTTTCATTGTTTTGTTGTTGCTGCTGCATTAAAACGCCAACGCCACTGATTGGGACACTTGGCAGGACAACGGTCGTCCATTGGCTCCGGCATGAAAGGGGTTTAGGAGTTTCAGTTCCCGGGACATGAAAATCCA
GCGTCTGAGTCGGTAAAATCGGGGTTAGCCAGGTCGATTCTGTGAATCCCGCTGTGTTCGTTCGGTGGTGATTGTTGACAGGTAAGAAGGGAGGAAAGGGGACCCTGGAGAGAAATAAATTTGAGGCCTCGAGGGGGTGGGCGTTGAAGCGGGTCAGGAGCCGTAAAGGATTCGAACCTCGAACCTCTGCATTCATTTAC
GCATTAACTATGGAGGCATCTCTTCGCTGCCCAACCGACATTTTGCAATGCTTGAATCGTGAATTTGTAGCGATGGTGCTGTGAATAGACGGGAGGGATCTTTGAAACTCGCAATGGCAGAGGTCGTGAATTTTCTTGTATGACGGCGGAGTTTCGAAAACGTGACGTCACGCGGCCGAGGCCTGGGGTGATTAAAACCA
ACTGCTTGGCTTCGGCTTTTCGTGGAACCCTGTTCGAATCCCATAAGAGTATGCAAAATAGGAAAAGAGAGGAAAGTACGGGTGGTGGAAATGTGCAAAGGAGAGCCCGCGACTGAGAAGGGGAACTCCAAGGGTTTGCGAGGGCAGATGGGATTGAAATGCCTGGTGGCTGGGGGTCAGATGAAGGCCGAGAAATTCAG
ACATTCAGCGATAGCCCATCCTCGTTCTCGCACCCAGGTTTGGATTATTCGTGTCACGTCAACGTTCTTGATCTGGACATGCGCGATTCAGCTCACTGCGCTGGGAGAATTATGGGGGTCTCGCGTGCTTAAAGGCCTGCCCTCTTGCTTTACTCATCCCGATGAATCCTCTCAAACATTCTTGACCCAGAAATCGGCCG
CCCTCCAGAAGATCGTTCTGCCACCAAAGAGAGTGTATAAAAACAATGGTTATCTTCTGGTGTCTTGCAATGGAGGCCTAAATCAGATGCGAGCAGCGATATGCGACATGGTTGCTATTGCAAGGTATCTTAATGTGACATTGGTTGTACCAGAACTGGACAAAACATCATTCTGGGCAGATCCAAGTGAATTCAAAGAC
ATATTTGATGTTGATCACTTTATTACATCTTTGAGAGATGAAGTTCGAATACTCAAAGAACTTCCCCCAAGACTAAAGAACAGAGTACAGCAGAGAATGGTACCTTCCATGCCTCCTGTGAGCTGGTCAAACATATCGTACTACCTTCATCAGATTCTTCCACTGATACAGAAATACAAAGTTCTGCATTTGAACAAGAC
AGATGCACGGCTAGCTAATAATGGTTTGCCATTAGAGATCCAAAAGCTACGTTGCCGTGCAAATTACCATGCTCTTCGGTTTACTGCACAAATTGAAGAGTTAGGCCGAAGGCTCTTAAAAATATTGAGCGAAAATGGGCCATTTTTGGTCTTACATCTTCGGTATGAAATGGATATGCTGGCTTTCTCTGGCTGTACTC
ATGGTTGTAGTGATGGAGAGGCTGAGGAACTCACCAGAATGAGgtatgcgtatccatggtggaaggaaaaagtcatcaattctgaactgaaacgactggatggcttatgtccattaacaccagaagagactgcactggttttgcagGCACTTCATTTTGATAAAAATATGCAGATTTATATTGCAGCTGGTGAAATATAT
GGTGGAGAAAGGAGGATGTCCACCCTATCCGCAGCTTATCCCAAAATGGTTAGAAAAGAAATGCTTCTTAATCCTGAGGATTTGAGGCCTTTCCAAAATCACTCATCCCAAATGGCTGCCCTGGATTACATCGTCTCTCGAGAGAGTGATGTGTTTGTTCCAACATATGATGGAAATATGGCAAAAGTTGTTGAAGGGCA
CCGAAGATTCTTAGGATTTCGGAAAACAATCTTGTTGGACAGGAAACGTCTGGTTGGACTTTTTGACCAATATAACAATGGGACCTTAAATTGGGATGAATTTGCCCGTGCTGTTAATGAAGTACATGCAGACCGGATGGGAGAACCAACAAAAAGAATAGCTATTCCTGATAGACCAAAGGAAGAGGACTATTTCTATG
CAAATCCGGAGGAATGTTTGCAACAGCCGCTTGATCTTGAACACAATTCCTTTTAGTTCTTTTCATTATTTTATTATTTACCACTGGAGTCTCTTGTTCCTACAAGAGGGACTATTTCAGTTTTAGATGATCTCCAGAAATCCATCTGCTCAGTTATATTAATGCTTCGGAGGATTCATGGTTTTTTCATCCCTTAAAGA
GCGTTCTTTAGATTATTTTCAGAAAAGTCAGAGCTAAGACATCTCTGAGAATATAAAGATGGGTGCCTTCATGAGCCTTACTCTCAGATGTCATATGCGCATATGTATTCAACTGAAAGTAAAGGAGTGTTCTTTTGTTGCAGAGTTCACCATAGTTGCGGGTTGGTATAACATCATCTTGCTGAGTAAAGCAAACCTGT
ATTTATAGCTAGGATAATCTATTTTTCCTCAATCAGAGTCTTACTTGACGGGCTGCATCATTGTGTACAGTTCTCAACATGGTGCCAGAGAAGGTATAATCACACACAATCAAATGTGTGGATTCTGGAAGACAGCTAGAAACATACGAAATTTAATGTATTGATTGTCGGATCACATCTAGAGGCATTGTCCATTACTG
GAGCTAGATGGCATTGTCTTGGATGAATACAAGAGAAAGGTTCCATCTCTTGATATCTTGTTATTGAACTAGACCTAGTAAGTACCATTGGTTGTTACACTATGCAATAAAAATCACCTAAGCACTCTGCTGCTTTTACAGAAACTCCATATTGACACTAGTACTTGAAAAATTTGAGATTTCCACTGCTACCCATATGT
ATATGAGCGGAAAATTGTCTTTACTGAAACATTGATTTTTTAAAGTTGCATTAAGCTCTGTTACATTCTTAAATTCAAGTCGAA