NA ----> NA
Intron 1 GTGAGATTCA ... GTTTGGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 74.89 | 15 | 12.8 | 44.8 |
| A2 | 75.51 | 12 | 6 | 37 |
| A3 | 69.96 | 28 | 15.3 | 65.3 |
| A4 | 72.96 | 10 | 10.3 | 27.3 |
| A5 | 57.78 | 19 | 5 | 26 |
| A6 | 67.38 | 65 | 23.3 | 134.3 |
| A7 | 69.42 | 62 | 31.8 | 140.8 |
| A8 | 64.74 | 26 | 11.8 | 47.8 |
| A9 | 67.75 | 47 | 24.8 | 98.8 |
| A10 | 59.3 | 58 | 10.5 | 84.5 |
>TRINITY_DN102878_c0_g1_i2 from sample A3 / Example spliced isoformGGTAAACTCTTTTTCAATTTGATATTCTGGCCGCGATTTTGGCAGGAATTGCGAACAAATATCTGGCCACTTATCCGTCATAGCGAGCGTTCGAGTTCATACTCTTAAGGCGGGTACGATAGTTTTGGTTACATTATGGTCGAAGTTTGATTTAAAGTTAACAGAGGGAGGGAGCGATATATTTTTCTGTGAAAAATGGC
AGGATGGTCAATGCTGGGAAGTGTTGGCAGAAGGATCGGTATGAAGGGTGTCGATAAAGGGGCGGCATCTGTTTGCGAGCAAGGAAGGGCGAATGCCACTCAGACGGCTGAACAGATAGACCCTCAACTTGATGGTTGGGAATTGGCAGGGGACGAAGATCAACACCACCATCATGCCCATGATCGCCTCCCCATTGTTG
GATCGGCCCCGGCTGAGAAAGAGGTTCAGGTGGTCGCCTCTAATCTGCAGGATGCCCTTACACGGGACAGCATCCCTGTTTATGCCACCTTTGATCATAAAACAGCACCATTATCATCCTCTGCACTGCATGAAATAGCTGAATCAATTGAAGTTGGGACCATTGAACATAAAATAGCATCGTCATTATCCTCTTCGATG
CATGAAATATCTGATTCAGTTGAAGCTGACGCCTTTGATCCTACAATAGCATCATTGTCATTCTCTTCAGGACAAGATGAAATATCTGATTCAGTTGAAGCTGGCAACTTTGATAAAAAACCAGCATTGTCATCATCCTCTTCCATGCATGAAATATTTGAATCAGTTGAAGATGACACCTTTGATCACAAAATACCATT
GTCACCAACTACTTTGGTTCATCAAATATCTGATTCAGTTGAAGCTGGCACCATTGATCTTAAAACAACATCGCCATCATTCTCTTCAGTGCAAGATGAAATATCAGCTTCAGTTGAAGCTGGCACCTTTGATGATAAATCATCATTATCATCCTCTTCAGTGCAAAATGAAATATCTGATTCAGTTGAAGCTGGGACTT
TTGATTATAAAACGGCCGCAGCATCATCCTCTTCAGTTCATGAAATATCTGATTTAATTGAAGCTGGCACCGTTGATCATAAAACAGCATCATCATCCTCTTCAATGCCTGAAAGATCTGATTTAGTTGAAGTTTCATCCATCCGAGAAAATTCGAACAAATCCTGTGGGACTTTAGATAACCAAATGGAGCTAGAATTG
AATGAAGACAATTACAGAATGCTGCAGAAGGTTGGGCACGATAATGTCCGTGAGGCATTCCACTTGCTTCAAAATGATCCTACTGTCCAGAGAATGGTCATGTCAGTGGCCTCAGATAAAGCTGTCTGGGATGCTTTGCTTAAGAATGAGAAGGTTCATGAATTCAGACAATCATTTCAGCAAGGTGAACTAAAGCTGTT
GGAGACATCTAAAGGCACAGAAAATTTTGCTTTTCATAAGGAGAATCCTTTCTTCCAGGCTATTGAAAATATTAAAACGAAGGTGATGGAATTCACAGAGAAAACAACAGAAGTTATTAACCAATTTCTTGGATTCACAGACAAGAAAATCCTTTTGGAGAAAGATGGAGATATGGACCGGGCTTTAAAGGCTTCTCTGA
TACTTTTTGTTGCTCTGCTGGTGACAGTTCTAGTCAGACGGGTATAAAATATATAATATTCTTACTTAGTGAGGATTAGACAGCCGGCTTTGGTTATTTTCCTCGAATTTATTTTTCTTATTTGGTGAGTACCTAGATGCTGGGGATTTTGTTATTATATCAGCATTTTGCATATATTTAATATAATATTAAAATATTAA
AAATATAAAAA
>TRINITY_DN102878_c0_g1_i3 from sample A3 / Example unspliced isoform:GGTAAACTCTTTTTCAATTTGATATTCTGGCCGCGATTTTGGCAGGAATTGCGAACAAATATCTGGCCACTTATCCGTCATAGCGAGCGTTCGAGTTCATACTCTTAAGGCGGGTACGATAGTTTTGGTTACATTATGGTCGAAGTTTGATTTAAAgtgagattcattgctacattcggttagagatgtaaatcgatctg
caaattgttattgaattcgcctgtgttttcgtttgggcagGTTAACAGAGGGAGGGAGCGATATATTTTTCTGTGAAAAATGGCAGGATGGTCAATGCTGGGAAGTGTTGGCAGAAGGATCGGTATGAAGGGTGTCGATAAAGGGGCGGCATCTGTTTGCGAGCAAGGAAGGGCGAATGCCACTCAGACGGCTGAACAGA
TAGACCCTCAACTTGATGGTTGGGAATTGGCAGGGGACGAAGATCAACACCACCATCATGCCCATGATCGCCTCCCCATTGTTGGATCGGCCCCGGCTGAGAAAGAGGTTCAGGTGGTCGCCTCTAATCTGCAGGATGCCCTTACACGGGACAGCATCCCTGTTTATGCCACCTTTGATCATAAAACAGCACCATTATCA
TCCTCTGCACTGCATGAAATAGCTGAATCAATTGAAGTTGGGACCATTGAACATAAAATAGCATCGTCATTATCCTCTTCGATGCATGAAATATCTGATTCAGTTGAAGCTGACGCCTTTGATCCTACAATAGCATCATTGTCATTCTCTTCAGGACAAGATGAAATATCTGATTCAGTTGAAGCTGGCAACTTTGATAA
AAAACCAGCATTGTCATCATCCTCTTCCATGCATGAAATATTTGAATCAGTTGAAGATGACACCTTTGATCACAAAATACCATTGTCACCAACTACTTTGGTTCATCAAATATCTGATTCAGTTGAAGCTGGCACCATTGATCTTAAAACAACATCGCCATCATTCTCTTCAGTGCAAGATGAAATATCAGCTTCAGTTG
AAGCTGGCACCTTTGATGATAAATCATCATTATCATCCTCTTCAGTGCAAAATGAAATATCTGATTCAGTTGAAGCTGGGACTTTTGATTATAAAACGGCCGCAGCATCATCCTCTTCAGTTCATGAAATATCTGATTTAATTGAAGCTGGCACCGTTGATCATAAAACAGCATCATCATCCTCTTCAATGCCTGAAAGA
TCTGATTTAGTTGAAGTTTCATCCATCCGAGAAAATTCGAACAAATCCTGTGGGACTTTAGATAACCAAATGGAGCTAGAATTGAATGAAGACAATTACAGAATGCTGCAGAAGGTTGGGCACGATAATGTCCGTGAGGCATTCCACTTGCTTCAAAATGATCCTACTGTCCAGAGAATGGTCATGTCAGTGGCCTCAGA
TAAAGCTGTCTGGGATGCTTTGCTTAAGAATGAGAAGGTTCATGAATTCAGACAATCATTTCAGCAAGGTGAACTAAAGCTGTTGGAGACATCTAAAGGCACAGAAAATTTTGCTTTTCATAAGGAGAATCCTTTCTTCCAGGCTATTGAAAATATTAAAACGAAGGTGATGGAATTCACAGAGAAAACAACAGAAGTTA
TTAACCAATTTCTTGGATTCACAGACAAGAAAATCCTTTTGGAGAAAGATGGAGATATGGACCGGGCTTTAAAGGCTTCTCTGATACTTTTTGTTGCTCTGCTGGTGACAGTTCTAGTCAGACGGGTATAAAATATATAATATTCTTACTTAGTGAGGATTAGACAGCCGGCTTTGGTTATTTTCCTCGAATTTATTTTT
CTTATTTGGTGAGTACCTAGATGCTGGGGATTTTGTTATTATATCAGCATTTTGCATATATTTAATATAATATTAAAATATTAAAAATATAAAAA
Intron 2 GTACGATAGT ... GTTTGGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.23 | 20 | 5 | 45 |
| A2 | 69.81 | 16 | 0 | 37 |
| A3 | 68.75 | 30 | 4 | 66 |
| A4 | 67.44 | 14 | 7.5 | 29 |
| A5 | 60.47 | 17 | 0 | 26 |
| A6 | 64.59 | 74 | 6 | 135 |
| A7 | 68.93 | 64 | 3 | 142 |
| A8 | 53.93 | 41 | 11.5 | 48 |
| A9 | 66.89 | 49 | 1.5 | 99 |
| A10 | 62.5 | 51 | 2.5 | 85 |
>TRINITY_DN102878_c0_g1_i1 from sample A3 / Example spliced isoformGGTAAACTCTTTTTCAATTTGATATTCTGGCCGCGATTTTGGCAGGAATTGCGAACAAATATCTGGCCACTTATCCGTCATAGCGAGCGTTCGAGTTCATACTCTTAAGGCGGGTTAACAGAGGGAGGGAGCGATATATTTTTCTGTGAAAAATGGCAGGATGGTCAATGCTGGGAAGTGTTGGCAGAAGGATCGGTATG
AAGGGTGTCGATAAAGGGGCGGCATCTGTTTGCGAGCAAGGAAGGGCGAATGCCACTCAGACGGCTGAACAGATAGACCCTCAACTTGATGGTTGGGAATTGGCAGGGGACGAAGATCAACACCACCATCATGCCCATGATCGCCTCCCCATTGTTGGATCGGCCCCGGCTGAGAAAGAGGTTCAGGTGGTCGCCTCTAA
TCTGCAGGATGCCCTTACACGGGACAGCATCCCTGTTTATGCCACCTTTGATCATAAAACAGCACCATTATCATCCTCTGCACTGCATGAAATAGCTGAATCAATTGAAGTTGGGACCATTGAACATAAAATAGCATCGTCATTATCCTCTTCGATGCATGAAATATCTGATTCAGTTGAAGCTGACGCCTTTGATCCTA
CAATAGCATCATTGTCATTCTCTTCAGGACAAGATGAAATATCTGATTCAGTTGAAGCTGGCAACTTTGATAAAAAACCAGCATTGTCATCATCCTCTTCCATGCATGAAATATTTGAATCAGTTGAAGATGACACCTTTGATCACAAAATACCATTGTCACCAACTACTTTGGTTCATCAAATATCTGATTCAGTTGAA
GCTGGCACCATTGATCTTAAAACAACATCGCCATCATTCTCTTCAGTGCAAGATGAAATATCAGCTTCAGTTGAAGCTGGCACCTTTGATGATAAATCATCATTATCATCCTCTTCAGTGCAAAATGAAATATCTGATTCAGTTGAAGCTGGGACTTTTGATTATAAAACGGCCGCAGCATCATCCTCTTCAGTTCATGA
AATATCTGATTTAATTGAAGCTGGCACCGTTGATCATAAAACAGCATCATCATCCTCTTCAATGCCTGAAAGATCTGATTTAGTTGAAGTTTCATCCATCCGAGAAAATTCGAACAAATCCTGTGGGACTTTAGATAACCAAATGGAGCTAGAATTGAATGAAGACAATTACAGAATGCTGCAGAAGGTTGGGCACGATA
ATGTCCGTGAGGCATTCCACTTGCTTCAAAATGATCCTACTGTCCAGAGAATGGTCATGTCAGTGGCCTCAGATAAAGCTGTCTGGGATGCTTTGCTTAAGAATGAGAAGGTTCATGAATTCAGACAATCATTTCAGCAAGGTGAACTAAAGCTGTTGGAGACATCTAAAGGCACAGAAAATTTTGCTTTTCATAAGGAG
AATCCTTTCTTCCAGGCTATTGAAAATATTAAAACGAAGGTGATGGAATTCACAGAGAAAACAACAGAAGTTATTAACCAATTTCTTGGATTCACAGACAAGAAAATCCTTTTGGAGAAAGATGGAGATATGGACCGGGCTTTAAAGGCTTCTCTGATACTTTTTGTTGCTCTGCTGGTGACAGTTCTAGTCAGACGGGT
ATAAAATATATAATATTCTTACTTAGTGAGGATTAGACAGCCGGCTTTGGTTATTTTCCTCGAATTTATTTTTCTTATTTGGTGAGTACCTAGATGCTGGGGATTTTGTTATTATATCAGCATTTTGCATATATTTAATATAATATTAAAATATTAAAAATATAAAAA
>TRINITY_DN102878_c0_g1_i3 from sample A3 / Example unspliced isoform:GGTAAACTCTTTTTCAATTTGATATTCTGGCCGCGATTTTGGCAGGAATTGCGAACAAATATCTGGCCACTTATCCGTCATAGCGAGCGTTCGAGTTCATACTCTTAAGGCGGgtacgatagttttggttacattatggtcgaagtttgatttaaagtgagattcattgctacattcggttagagatgtaaatcgatctg
caaattgttattgaattcgcctgtgttttcgtttgggcagGTTAACAGAGGGAGGGAGCGATATATTTTTCTGTGAAAAATGGCAGGATGGTCAATGCTGGGAAGTGTTGGCAGAAGGATCGGTATGAAGGGTGTCGATAAAGGGGCGGCATCTGTTTGCGAGCAAGGAAGGGCGAATGCCACTCAGACGGCTGAACAGA
TAGACCCTCAACTTGATGGTTGGGAATTGGCAGGGGACGAAGATCAACACCACCATCATGCCCATGATCGCCTCCCCATTGTTGGATCGGCCCCGGCTGAGAAAGAGGTTCAGGTGGTCGCCTCTAATCTGCAGGATGCCCTTACACGGGACAGCATCCCTGTTTATGCCACCTTTGATCATAAAACAGCACCATTATCA
TCCTCTGCACTGCATGAAATAGCTGAATCAATTGAAGTTGGGACCATTGAACATAAAATAGCATCGTCATTATCCTCTTCGATGCATGAAATATCTGATTCAGTTGAAGCTGACGCCTTTGATCCTACAATAGCATCATTGTCATTCTCTTCAGGACAAGATGAAATATCTGATTCAGTTGAAGCTGGCAACTTTGATAA
AAAACCAGCATTGTCATCATCCTCTTCCATGCATGAAATATTTGAATCAGTTGAAGATGACACCTTTGATCACAAAATACCATTGTCACCAACTACTTTGGTTCATCAAATATCTGATTCAGTTGAAGCTGGCACCATTGATCTTAAAACAACATCGCCATCATTCTCTTCAGTGCAAGATGAAATATCAGCTTCAGTTG
AAGCTGGCACCTTTGATGATAAATCATCATTATCATCCTCTTCAGTGCAAAATGAAATATCTGATTCAGTTGAAGCTGGGACTTTTGATTATAAAACGGCCGCAGCATCATCCTCTTCAGTTCATGAAATATCTGATTTAATTGAAGCTGGCACCGTTGATCATAAAACAGCATCATCATCCTCTTCAATGCCTGAAAGA
TCTGATTTAGTTGAAGTTTCATCCATCCGAGAAAATTCGAACAAATCCTGTGGGACTTTAGATAACCAAATGGAGCTAGAATTGAATGAAGACAATTACAGAATGCTGCAGAAGGTTGGGCACGATAATGTCCGTGAGGCATTCCACTTGCTTCAAAATGATCCTACTGTCCAGAGAATGGTCATGTCAGTGGCCTCAGA
TAAAGCTGTCTGGGATGCTTTGCTTAAGAATGAGAAGGTTCATGAATTCAGACAATCATTTCAGCAAGGTGAACTAAAGCTGTTGGAGACATCTAAAGGCACAGAAAATTTTGCTTTTCATAAGGAGAATCCTTTCTTCCAGGCTATTGAAAATATTAAAACGAAGGTGATGGAATTCACAGAGAAAACAACAGAAGTTA
TTAACCAATTTCTTGGATTCACAGACAAGAAAATCCTTTTGGAGAAAGATGGAGATATGGACCGGGCTTTAAAGGCTTCTCTGATACTTTTTGTTGCTCTGCTGGTGACAGTTCTAGTCAGACGGGTATAAAATATATAATATTCTTACTTAGTGAGGATTAGACAGCCGGCTTTGGTTATTTTCCTCGAATTTATTTTT
CTTATTTGGTGAGTACCTAGATGCTGGGGATTTTGTTATTATATCAGCATTTTGCATATATTTAATATAATATTAAAATATTAAAAATATAAAAA