sp|Q9LTY1|MAD1_ARATH ----> Mitotic spindle checkpoint protein MAD1
Intron 1 GTAAATGTCA ... ATCAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.77 | 18 | 8 | 0 |
| A2 | 40 | 12 | 8 | 4 |
| A3 | 0 | 9 | 0 | 0 |
| A4 | 18.75 | 13 | 3 | 0 |
| A5 | 33.33 | 2 | 1 | 0 |
| A6 | 16.33 | 41 | 8 | 0 |
| A7 | 24.24 | 50 | 16 | 0 |
| A8 | 22.45 | 114 | 33 | 0 |
| A9 | 18.31 | 58 | 13 | 0 |
| A10 | 30 | 35 | 15 | 0 |
>TRINITY_DN111980_c0_g1_i1 from sample A2 / Example spliced isoformCAGTAATACCATCTTCAGATTGTTGCAGCAGTTGATTACAGGGAGGAAACTTGCACGGTTCATGCTGTGACTGCTCATGCAACCAATAATCAAATAATGGAGCAGGAGTTAGTAGCTGCCAATGGGCGTGAGAAGAGTATTGGGGATAGTTTTAAAAAAGAGATCAATCAATTTCAAGAATGGCTTCAGACACAGATAAA
GCGTTGTAGTGAGTTGGAGATGAAGCTTCAGCACGAAATGAAGCTGCGTGCAGAGGCAGAGTCCATTGCAATTACTGCTAATGACAAAATCACAATGCTTGAAGAAAAACTGCAGAAGGCAACTGAACTTGCTGAAAGACAGATTACTCATTTAAATTCTGAGATTTCAAGATTGAAGATGGATTCTGAACTTGCAGTTT
CTAGAATAAGAGCAGAGAATGAGAGAGAAACCTGTAGAGCAAACAGTGCAGAGCAGGAAGCAGAGCTTCTGAAAAAACAATACGAGGACCTTAAAGAACGATTATCTGAGAGCTTAAATGAGAAAAGAGAATTGGTGCAGAAAGCTTCTAATGCCAGTGCAGAAGCACAAAGTTCAAATGAGAATGAAAGCAAAACAGTT
GTGAAACATTTGCAAGAAGAACTGAGGCATTATGAGGCTGAAGTGGCAGAGGCAAGGAAGTCGAACATGTTTCACACCAATGCTGAGTTGTTAAGAGAGAAACTTTTGGAAGAAAAGCAGCGAGCTGATCGGGCTGAAGCAGCTTTAGAAGCTTTGCCAGAACTTCAATCGAAAGTAACTTGCTTAGAAAATGAGCTGCA
GTCCTGGAGGTCTATGATTGATGGCCTTCCTGGTGTCGACACTTGTGATGATGTGCCTCGCAAGATTGCAGAGCTTCAGAAGGGAGCAGTTGGAGGTATGGCCAAAGTTGGTGATATGGGTATACAACTGAAAGAGCTACAAGTTTCATTAGAAAAAGCAGAGCATGAGAAACATCTAGCTGATAGACGAGTTGCTTTGG
CTAGAGAAGAAAGGGAGGAAGCAATCACTAATATTAAAAGGCTTGAACGAAAGGTTGCATTACTTGGCAGAGAAAGGGATGGCTTGAAAGCAATAATTTCTTCCTATGATGAGGAAGAAGCAGTTGCTCTGAAAAGGCAGAAGGTTGGAGATGGATCTACTCTTGAGAGATCAAAGGATAAGCGAATTCAGGAGCTAGAG
GCCTCCCTTGCAGAGTCTGAGCGTAACATGAAACAGCTTGAACAGGATTTGGAAGATCAAGGAGAAAATCTCAAGAACCAACACCGCAAGACAGAGTTGCTCTATCAGGATCTTGATGATGCATTGAGGAAAATAAAATCCCTAGAGCGTGAAGGGGATCGCCTCAGATGTGAAAATGCTATATTTGAAGCCAAGCTTGG
GTATGGTGATTTTAATGTTGCAACAACAAAGGTCTTGCGCATGGTGAATACCTTGGGGACAGATGACCAAACAAAGGACACAATAGAGTCTCTACGGGTGGAACTGCAAAGACTTCAGGCAAAGCTGCAAGTTACTGAGGAGTTGAAAGGCCAGTCTGAGGGTGGTGATCTTGCCGATACTTTTATTTCCGAGACAGTAA
CTCAACTGAAAGCACAAATTGCAACCCTGGAAAAACGTGAAGAAAGGTATAAGAAGGTATTTGCAGAAAAAATTTCTGTTTTCAGGCTTGCATGCTGTGCACTTTTTGGTTATAAGATACAGATGGATGAACAGCAACGCCCAAGTGGCATACCGGTTACGTTATTTACTCTTCAATCTATATATGCACAGAATGATGAT
GAGAAACTTGAATTTGAATATGAATCAGGAAACATGAATCTGCAGATGAATCGATACACTTCCCAGGCTGAAATAGCACGTGAGGTGAATGTTTTCCTGCACAAGTTTCACTCGATTCCAGCTTTCACAGCTAATTTGACAGTTGAACTTTTTAACAGATCAACAATGAGTTAAATATGATCCTTTCAGGAAGTTGATTG
AAAGTTGGAAACAAAATATGAGTTTAGTTTGAATAGCACTTCAAATACATACATGCGTACATGATTTTCATTGTATAATTCTTCATTTCATTTAGCTTTCACAGCAGTCTTCAGAGTTTTACAACTGTATTAACAGGTTAATAAATGAAATATAGTAGGTGATAATATACAGGCACAAGGTTACACAGCACATGTGATAG
TAATAGGTCCCGGCTTATTTATAGTTCAAAGGTAATATCTAGACTTAATCAGAA
>TRINITY_DN111980_c0_g1_i6 from sample A2 / Example unspliced isoform:AATATTTATTCTTATAAACTGATTCCAGAGGGTGGTGATCTTGCCGATACTTTTATTTCCGAGACAGTAACTCAACTGAAAGCACAAATTGCAACCCTGGAAAAACGTGAAGAAAGGTATAAGAAGGTATTTGCAGAAAAAATTTCTGTTTTCAGGCTTGCATGCTGTGCACTTTTTGGTTATAAGATACAGATGGATGA
ACAGCAACGCCCAAGTGGCATACCGGTTACGTTATTTACTCTTCAATCTATATATGCACAGAATGATGATGAGAAACTTGAATTTGAATATGAATCAGGAAACATGAATCTGCAGATGAATCGATACACTTCCCAGGCTGAAATAGCACGTGAGgtaaatgtcacaatttaatctgtttatttttttgttaagattttgt
atgtggcagattggcagaacttgatgattacatttaatttgatcaatgcagGTGAATGTTTTCCTGCAC
Intron 2 GTTGCATTAC ... TGAAGCCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 45 | 48 | 42 |
| A2 | 55.84 | 34 | 53 | 33 |
| A3 | 63.87 | 28 | 54 | 45 |
| A4 | 54 | 23 | 34 | 20 |
| A5 | 64.71 | 3 | 7 | 4 |
| A6 | 60 | 6 | 3 | 15 |
| A7 | 62.45 | 46 | 88 | 65 |
| A8 | 59.34 | 37 | 40 | 68 |
| A9 | 59.11 | 46 | 80 | 53 |
| A10 | 68.75 | 20 | 53 | 35 |
>TRINITY_DN40375_c0_g1_i1 from sample A9 / Example spliced isoformGTGAGGTGAGGTGGGGACGCAATTGGACACCAACACCACAAACACAAATGGCCGCCACACTGCAGTTTTGTATGGTTTGAAAAATAGAGGTACGCATAATAGAACAGAGAGGGGTCCCAGAATGCTCTAAACCGCGAAAATTTGCATCTTCATTTGGAAGCAAATCGTGGCCTGTATATCATCGACCCAGAGCTGTATAT
CATCGATCCAGCAGCTCTTCTCTGGCCGGTTCGAATAGAAGTAAAAATATGATTCTGAGAACCCCCCCTCGGCAGCGGAGGGCGGCCCCTCCTCCTCCTCCGCCTTCGCCTTCTAATCCTTCTCCTTCGGCGGGAGCGCAGGCACAGGCGCTCTTTCCACCACCGTCTTCCGCGCTATCTCTTCGGTCTCCTGCAATGAA
CGCAAGGGGCAATTCTCAGCAAATTGTGCCTTATGACGATCCTCTGGATCTCCTCCAGCTCTCCGATGGCGACAATGATGGCTCCGACGGAATGCTATGCACCTATCAATGCCGGCAGATGGTAAAATCAGATGTTCTCGAAACATTGACCATAAGAGAAAAGGAAGTTACTGAGCTTCAATCTAAGGTCAAGTCGTTGC
AAGAAGCAAATAGTAATCAAGAACTACAGAAAAAGGAGTTAGAAGCTCGCATTCAAATAATGGAGCAGGAGTTAGCAGCTGCCAATGGGCGTGAGAAGAGTATTGGGGATAGTTTTAAAAAAGAGATCAATCAATTTCAAGAATGGCTTCAGACACAGATAAAGCGTTGTAGTGAGTTGGAGATGAAGCTTCAGCACGAA
ATGAAGCTGCGTGCAGAGGCAGAGTCCATTGCAATTACTGCTAATGACAAAATCACAATGCTTGAAGAAAAACTGCAGAAGGCAACTGAACTTGCTGAAAGACAGATTACTCATTTAAATTCTGAGATTTCAAGATTGAAGATGGATTCTGAACTTGCAGTTTCTAGAATAAGAGCAGAGAATGAGAGAGAAACCTGTAG
AGCAAACAGTGCAGAGCAGGAAGCAGAGCTTCTGAAAAAACAATACGAGGACCTTAAAGAACGATTATCTGAGAGCTTAAATGAGAAAAGAGAATTGGTGCAGAAAGCTTCTAATGCCAGTGCAGAAGCACAAAGTTCAAATGAGAATGAAAGCAAAACAGTTGTGAAACATTTGCAAGAAGAACTGAGGCATTATGAGG
CTGAAGTGGCAGAGGCAAGGAAGTCGAACATGTTTCACACCAATGCTGAGTTGTTAAGAGAGAAACTTTTGGAAGAAAAGCAGCGAGCTGATCGGGCTGAAGCAGCTTTAGAAGCTTTGCCAGAACTTCAATCGAAAGTAACTTGCTTAGAAAATGAGCTGCAGTCCTGGAGGTCTATGATTGATGGCCTTCCTGGTGTC
GACACTTGTGATGATGTGCCTCGCAAGATTGCAGAGCTTCAGAAGGGAGCAGTTGGAGGTATGGCCAAAGTTGGTGATATGGGTATACAACTGAAAGAGCTACAAGTTTCATTAGAAAAAGCAGAGCATGAGAAACATCTAGCTGATAGACGAGTTGCTTTGGCTAGAGAAGAAAGGGAGGAAGCAATCACTAATATTAA
AAGGCTTGAACGAAAGCTTGGGTATGGTGATTTTAATGTTGCAACAACAAAGGTCTTGCGCATGGTGAATACCTTGGGGACAGATGACCAAACAAAGGACACAATAGAGTCTCTACGGGTGGAACTGCAAAGACTTCAGGCAAAGCTGCAAGTTACTGAGGAGTTGAAAGGCCAGTCTGAGGGTGGTGATCTTGCCGATA
CTTTTATTTCCGAGACAGTAACTCAACTGAAAGCACAAATTGCAACCCTGGAAAAACGTGAAGAAAGGTATAAGAAGGTATTTGCAGAAAAAATTTCTGTTTTCAGGCTTGCATGCTGTGCACTTTTTGGTTATAAGATACAGATGGATGAACAGCAACGCCCAAGTGGCATACCGGTTACGTTATTTACTCTTCAATCT
ATATATGCACAGAATGATGATGAGAAACTTGAATTTGAATATGAATCAGGAAACATGAATCTGCAGATGAATCGATACACTTCCCAGGCTGAAATAGCACGTGAGGTGAATGTTTTCCTGCACAAGTTTCACTCGATTCCAGCTTTCACAGCTAATTTGACAGTTGAACTTTTTAACAGATCAACAATGAGTTAAATATG
ATCCTTTCAGGAAGTTGATTGAAAGTTGGAAACAAAATATGAGTTTAGTTTGAATAGCACTTCAAATACATACATGCGTACATGATTTTCATTGTATAATTCTTCATTTCATTTAGCTTTCACAGCAGTCTTCAGAGTTTTACAACTGTATTAACAGGTTAATAAATGAAATATAGTAGGTGATAATATACAGGCACAAG
GTTACACAGCACATGTGATAGTAATAGGTCCCGGCTTATTTATAGTTCAAAGGTAATATCTAGACTTAATCAGAGCGATTGTGTGTTCTTGGATCTTATGGACATATCAATATGATGCTCGGAAGGGGTTTGACCCCATAGGAAACCATCCTAATCTATATTGTTTTGTTTTTTTGTATTTCCTATTTGTCGAGTCAACC
CTAGCTTTTTGCTAGGGGATGGGTCAATGATGACCTATGGCCAAAATAGGTCTTGCACCGAATTGAGTCAAATCTGGTGGCTTTGGTGACATAATTTCATCCTTGATGCATTTTTTCTATTCAATCTACTCATTATGGTTATACAACTAAAATTCACTCCCTCCC
>TRINITY_DN40375_c0_g1_i3 from sample A9 / Example unspliced isoform:GTGAGGTGAGGTGGGGACGCAATTGGACACCAACACCACAAACACAAATGGCCGCCACACTGCAGTTTTGTATGGTTTGAAAAATAGAGGTACGCATAATAGAACAGAGAGGGGTCCCAGAATGCTCTAAACCGCGAAAATTTGCATCTTCATTTGGAAGCAAATCGTGGCCTGTATATCATCGACCCAGAGCTGTATAT
CATCGATCCAGCAGCTCTTCTCTGGCCGGTTCGAATAGAAGTAAAAATATGATTCTGAGAACCCCCCCTCGGCAGCGGAGGGCGGCCCCTCCTCCTCCTCCGCCTTCGCCTTCTAATCCTTCTCCTTCGGCGGGAGCGCAGGCACAGGCGCTCTTTCCACCACCGTCTTCCGCGCTATCTCTTCGGTCTCCTGCAATGAA
CGCAAGGGGCAATTCTCAGCAAATTGTGCCTTATGACGATCCTCTGGATCTCCTCCAGCTCTCCGATGGCGACAATGATGGCTCCGACGGAATGCTATGCACCTATCAATGCCGGCAGATGGTAAAATCAGATGTTCTCGAAACATTGACCATAAGAGAAAAGGAAGTTACTGAGCTTCAATCTAAGGTCAAGTCGTTGC
AAGAAGCAAATAGTAATCAAGAACTACAGAAAAAGGAGTTAGAAGCTCGCATTCAAATAATGGAGCAGGAGTTAGCAGCTGCCAATGGGCGTGAGAAGAGTATTGGGGATAGTTTTAAAAAAGAGATCAATCAATTTCAAGAATGGCTTCAGACACAGATAAAGCGTTGTAGTGAGTTGGAGATGAAGCTTCAGCACGAA
ATGAAGCTGCGTGCAGAGGCAGAGTCCATTGCAATTACTGCTAATGACAAAATCACAATGCTTGAAGAAAAACTGCAGAAGGCAACTGAACTTGCTGAAAGACAGATTACTCATTTAAATTCTGAGATTTCAAGATTGAAGATGGATTCTGAACTTGCAGTTTCTAGAATAAGAGCAGAGAATGAGAGAGAAACCTGTAG
AGCAAACAGTGCAGAGCAGGAAGCAGAGCTTCTGAAAAAACAATACGAGGACCTTAAAGAACGATTATCTGAGAGCTTAAATGAGAAAAGAGAATTGGTGCAGAAAGCTTCTAATGCCAGTGCAGAAGCACAAAGTTCAAATGAGAATGAAAGCAAAACAGTTGTGAAACATTTGCAAGAAGAACTGAGGCATTATGAGG
CTGAAGTGGCAGAGGCAAGGAAGTCGAACATGTTTCACACCAATGCTGAGTTGTTAAGAGAGAAACTTTTGGAAGAAAAGCAGCGAGCTGATCGGGCTGAAGCAGCTTTAGAAGCTTTGCCAGAACTTCAATCGAAAGTAACTTGCTTAGAAAATGAGCTGCAGTCCTGGAGGTCTATGATTGATGGCCTTCCTGGTGTC
GACACTTGTGATGATGTGCCTCGCAAGATTGCAGAGCTTCAGAAGGGAGCAGTTGGAGGTATGGCCAAAGTTGGTGATATGGGTATACAACTGAAAGAGCTACAAGTTTCATTAGAAAAAGCAGAGCATGAGAAACATCTAGCTGATAGACGAGTTGCTTTGGCTAGAGAAGAAAGGGAGGAAGCAATCACTAATATTAA
AAGGCTTGAACGAAAGgttgcattacttggcagagaaagggatggcttgaaagcaataatttcttcctatgatgaggaagaagcagttgctctgaaaaggcagaaggttggagatggatctactcttgagagatcaaaggataagcgaattcaggagctagaggcctcccttgcagagtctgagcgtaacatgaaacagc
ttgaacaggatttggaagatcaaggagaaaatctgaagaaccaacaccgcaagacagagttgctctatcaggatcttgatgatgcattgaggaaaataaaatccctagagcgtgaaggggatcgcctcagatgtgaaaatgctatatttgaagccaagCTTGGGTATGGTGATTTTAATGTTGCAACAACAAAGGTCTTG
CGCATGGTGAATACCTTGGGGACAGATGACCAAACAAAGGACACAATAGAGTCTCTACGGGTGGAACTGCAAAGACTTCAGGCAAAGCTGCAAGTTACTGAGGAGTTGAAAGGCCAGTCTGAGGGTGGTGATCTTGCCGATACTTTTATTTCCGAGACAGTAACTCAACTGAAAGCACAAATTGCAACCCTGGAAAAACG
TGAAGAAAGGTATAAGAAGGTATTTGCAGAAAAAATTTCTGTTTTCAGGCTTGCATGCTGTGCACTTTTTGGTTATAAGATACAGATGGATGAACAGCAACGCCCAAGTGGCATACCGGTTACGTTATTTACTCTTCAATCTATATATGCACAGAATGATGATGAGAAACTTGAATTTGAATATGAATCAGGAAACATGA
ATCTGCAGATGAATCGATACACTTCCCAGGCTGAAATAGCACGTGAGGTGAATGTTTTCCTGCACAAGTTTCACTCGATTCCAGCTTTCACAGCTAATTTGACAGTTGAACTTTTTAACAGATCAACAATGAGTTAAATATGATCCTTTCAGGAAGTTGATTGAAAGTTGGAAACAAAATATGAGTTTAGTTTGAATAGC
ACTTCAAATACATACATGCGTACATGATTTTCATTGTATAATTCTTCATTTCATTTAGCTTTCACAGCAGTCTTCAGAGTTTTACAACTGTATTAACAGGTTAATAAATGAAATATAGTAGGTGATAATATACAGGCACAAGGTTACACAGCACATGTGATAGTAATAGGTCCCGGCTTATTTATAGTTCAAAGGTAATA
TCTAGACTTAATCAGAGCGATTGTGTGTTCTTGGATCTTATGGACATATCAATATGATGCTCGGAAGGGGTTTGACCCCATAGGAAACCATCCTAATCTATATTGTTTTGTTTTTTTGTATTTCCTATTTGTCGAGTCAACCCTAGCTTTTTGCTAGGGGATGGGTCAATGATGACCTATGGCCAAAATAGGTCTTGCAC
CGAATTGAGTCAAATCTGGTGGCTTTGGTGACATAATTTCATCCTTGATGCATTTTTTCTATTCAATCTACTCATTATGGTTATACAACTAAAATTCACTCCCTCCC