sp|Q9LE73|NUDT4_ARATH ----> Nudix hydrolase 4
Intron 1 GTAATGTATA ... TCATTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.55 | 10 | 9 | 15 |
| A2 | 49.9 | 19.4 | 7 | 31.5 |
| A3 | 61.54 | 20 | 24 | 40 |
| A4 | 56.73 | 19.5 | 13 | 38 |
| A5 | 62.5 | 3 | 6 | 4 |
| A6 | 52.53 | 61.9 | 39 | 98 |
| A7 | 57.12 | 43.5 | 36 | 80 |
| A8 | 42.67 | 44.4 | 19 | 47 |
| A9 | 54.93 | 54.4 | 31 | 101.5 |
| A10 | 49.8 | 57.5 | 29 | 85 |
>TRINITY_DN121829_c2_g1_i11 from sample A1 / Example spliced isoformCTGTGTACAGTTAAAGAAAGAACAATTTTATCGGTTTTTGGTGGGGCTCCCCTGCTGGGCGTGCTGCAGCCTTTCTTGACGCTGACCGCGGATTTATCACTTCGCAACATTCCGTGTCTGTCTCCCTTCGCAGAAAGAGTCTGCAATACGGTGCGGTAAGAAAAATTCAAATTCTTCTCAGCCACTTAACTGCATACAAA
TCTTCCTGGAACGTTCCTAACATAGTATATCCCGTCCTTAAACTATTTCTGCAAATTTTCAACAAAACCAGACCGACAAATGGGAATCCATTATTATTTTGGTCTGTGTGGAGTTTTCCTCTCTGCTCACAAAGCTTCGTAGAACGTTCCTACTACTCGGTTCTGCTTGTCTTCTTCTTTGCAAGTTTAGTACAAAACTA
GACCGATCCATATGGGACTCCATTATCAATGTTTTTGAGAGCTGAGGGAAATAGATTGCGTGTTAAAATGGCAAATGATTTGGTTTCCCGCACGGGACGCCTCCGGCAGCGCTATGATAACCAGTGCCGCCTTGTTGCAGGGTGCATTCCATACAGGTACAAGGAGCCTGCCGAGGCTTGCAGTGGTACAGCGAAGCAGG
AATTGGAGGTGCTGATGATTTTTTCACGTAGTGGAAAGGCACTTCTCTTCCCGAAGGGTGGTTGGGAGAACGATGAATCAGTACAGGAGGCAGCATGCAGAGAAGCTTTTGAAGAAGCAGGGGTTCGAGGGATTATCAAAGAAGATTTGGGATCCTGGGAAGATGACAGGGGCCTAGAAGGTTTTCACAGAACCCATATG
TTTGCATTGCTTGTTACTGAAGAACTGGATTCATGGCCTGAACAAGATGAACGTCAACGAAAATGGGTTACTATTACAGAGGCAGATGCAGGATGTAAGCATGACTGGATGCGACAAGCTCTTCATAGTTGTGTGACTTATCTTTCCAGCATACAGGAGGCTATCTGTGCTCATCCAGTGAGACCCTTACAGACATATCG
CCGCAGATCCCAGGACAGCTCACACGGCACCAACAGACAGGATACTTCCCAAGCTTGGCTGTGGGTTACAGCATCCAGCCAGACATATCTCAGACCAGATCTTCCTGCTCTTCCAGATCCTCTGACCAATCATCTAATAGGAGTTTCTTCTTTATGGTCTCAGATGTTAGAGTGATAGTATCAGGGGGTGTTGAGATTTC
CTAGGCATGACATCCTCCACTGGAGATTTGGTGCTTTTGGTGTTTGGTTCTCTGCAGTACTTGCACATAACTGCCGTACCGCTTCGTTTTCCTGCTCCATTATTTGACTTTAGATCTTATTCACCATAGAATAGCTCTGATTATATCATCATTTTCTAGGAGTGGCCTTTGCACTCTCATTTTGTATCTAACACTGTTGT
ACTTAGCAGTCCCATTGACCTATTTGTGTTAACTTGTTGGACATTAATAATCTTTCTTATATTATTTCATATACTATGTTTAGATGTTGAAGTTCCTGCTGTCATGCCTCACTGTGTCTAATCAAAATG
>TRINITY_DN121829_c2_g1_i20 from sample A1 / Example unspliced isoform:CTGTGTACAGTTAAAGAAAGAACAATTTTATCGGTTTTTGGTGGGGCTCCCCTGCTGGGCGTGCTGCAGCCTTTCTTGACGCTGACCGCGGATTTATCACTTCGCAACATTCCGTGTCTGTCTCCCTTCGCAGAAAGAGTCTGCAATACGGTGCGGTAAGAAAAATTCAAATTCTTCTCAGCCACTTAACTGCATACAAA
TCTTCCTGGAACGTTCCTAACATAGTATATCCCGTCCTTAAACTATTTCTGCAAATTTTCAACAAAACCAGACCGACAAATGGGAATCCATTATTATTTTGGTCTGTGTGGAGTTTTCCTCTCTGCTCACAAAGCTTCGTAGAACGTTCCTACTACTCGGTTCTGCTTGTCTTCTTCTTTGCAAGTTTAGTACAAAACTA
GACCGATCCATATGGGACTCCATTATCAATgtaatgtatattcctgtggagttgtccatgccatgatagtgagaacgattctgttttcctctgctactggcaattcaaattctcatatcaaagtcatttacagGTTTTTGAGAGCTGAGGGAAATAGATTGCGTGTTAAAATGGCAAATGATTTGGTTTCCCGCACGGGA
CGCCTCCGGCAGCGCTATGATAACCAGTGCCGCCTTGTTGCAGGGTGCATTCCATACAGGTACAAGGAGCCTGCCGAGGCTTGCAGTGGTACAGCGAAGCAGGAATTGGAGGTGCTGATGATTTTTTCACGTAGTGGAAAGGCACTTCTCTTCCCGAAGGGTGGTTGGGAGAACGATGAATCAGTACAGGAGGCAGCATG
CAGAGAAGCTTTTGAAGAAGCAGGGGTTCGAGGGATTATCAAAGAAGATTTGGGATCCTGGGAAGATGACAGGGGCCTAGAAGGTTTTCACAGAACCCATATGTTTGCATTGCTTGTTACTGAAGAACTGGATTCATGGCCTGAACAAGATGAACGTCAACGAAAATGGGTTACTATTACAGAGGCAGATGCAGGATGTA
AGCATGACTGGATGCGACAAGCTCTTCATAGTTGTGTGACTTATCTTTCCAGCATACAGGTATTCTCATCTTCACTGCCAGAATCGGGCAAGGGTCCTGAATCTCCTAATCATTCATCTCAAATATAAGACCAAGAACAGTTGTGACTTTCATTTATCAATCCCTGGAGAAAAAGGAATTTTCAAGATGGAAAATGTTGC
TGCTTACGTTTCATTCTGCTTATGATCAGCCATTAGATCCGCTTATATTTGATTTTGTGAGACCTCAGGAGGCTATCTGTGCTCATCCAGTGAGACCCTTACAGACATATCGCCGCAGATCCCAGGACAGCTCACACGGCACCAACAGACAGGATACTTCCCAAGCTTGGCTGTGGGTTACAGCATCCAGCCAGACATAT
CTCAGACCAGATCTTCCTGCTCTTCCAGATCCTCTGACCAATCATCTAATAGGAGTTTCTTCTTTATGGTCTCAGATGTTAGAGTGATAGTATCAGGGGGTGTTGAGATTTCCTAGGCATGACATCCTCCACTGGAGATTTGGTGCTTTTGGTGTTTGGTTCTCTGCAGTACTTGCACATAACTGCCGTACCGCTTCGTT
TTCCTGCTCCATTATTTGACTTTAGATCTTATTCACCATAGAATAGCTCTGATTATATCATCATTTTCTAGGAGTGGCCTTTGCACTCTCATTTTGTATCTAACACTGTTGTACTTAGCAGTCCCATTGACCTATTTGTAGTCATTTGTTGTACATTAATAGAATTAATTTCTCATTTTATAACAGATATGAAGTTTTAT
CTGGAGTCAATATCAGAGAACTGTATTGTCTGGACTCTGGAGGATGCTCATGCGAATTGATCATTTCAATTTATCCTCTGCTGTGAGGGTTCGTGTCAGCCACTGTGCAGAATCTTGCTTCTTTCTTCTCTTGGATAATTCTTAATTTAATGTCAAGTTTGTGTTGTTAGACACAAATACTCAGGCTTCTATTGCAGAAA
TTGCAAGGACAAAAATTTCCTAGGTTTTGTTGAGCAGTGTTCTTCTACCAATAAGACCTGGAGTAAAAATGGATACTAAAATTGCATATCCAAATCTCAACATAGCTCGACTTGGTGAACTTTGTCAATGTAAGATCTGGGCAAAGATGGATTTATGTTACAAGACCTTAGAATGAGATTTTATAAATGTACTTGTAGGT
TGAAAATGTTCATATTTGGAAATAACTCTTCAGAACAATTATAAAGATACTGCTGGAT
Intron 2 GTAAGAAAAT ... TCATTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.88 | 42 | 30 | 15 |
| A2 | 36.9 | 59 | 37 | 32 |
| A3 | 39.05 | 64 | 42 | 40 |
| A4 | 42.15 | 35 | 13 | 38 |
| A5 | 46.94 | 13 | 19 | 4 |
| A6 | 33 | 204 | 103 | 98 |
| A7 | 28.37 | 250 | 118 | 80 |
| A8 | 26.61 | 160 | 69 | 47 |
| A9 | 31.09 | 266 | 138 | 102 |
| A10 | 28.4 | 295 | 149 | 85 |
>TRINITY_DN42439_c0_g1_i2 from sample A6 / Example spliced isoformGTTAAAGAAAGAACAATTTTATCGGTTTTTGGTGGGGCTCCCCTGCTGGGCGTGCTGCAGCCTTTCTTGACGCTGACCGCGGATTTATCACTTCGCAACATTCCGTGTCTGTCTCCCTTCGTAGAAAGAGTCTGCAAGACGGTGCGGTTTTTGAGAGCTGAGGGAAATAGATTGTGTGTTAAAATGGCAAATGATTTGGT
TTCCCGCACGGGACGCCTCCGGCAGCGCTATGATAACCAGTGCCGCCTTGTTGCAGGGTGCATTCCATACAGGTACAAGGAGCCTGCCGAGGCTTGCAGTGGTACAGCGAAGCAGGAATTGGAGGTGCTGATGATTTTTTCACGTAGTGGAAAGGCACTTCTCTTCCCGAAGGGTGGTTGGGAGAACGATGAATCAGTAC
AGGAGGCAGCATGCAGAGAAGCTTTTGAAGAAGCAGGGGTTCGAGGGATTATCAAAGAAGATTTGGGATCCTGGGAAGATGACAGGGGCCTAGAAGGTTTTCACAGAACCCATATGTTTGCATTGCTTGTTACTGAAGAACTGGATTCATGGCCTGAACAAGATGAACGTCAACGAAAATGGGTTACTATTACAGAGGCA
GATGCAGGATGTAAGCATGACTGGATGCGACAAGCTCTTCATAGTTGTGTGACTTATCTTTCCAGCATACAGGTATTCTCATCTTCACTGCCAGAATCGGGCAAGGGTCCTGAATCTCCTAATCATTCATCTCAAATATAAGACCAAGAACAGTTGTGACTCTCATTTATCAATCCCTGGAGAAAAGGAATTTTCAAGAT
GGAAAATGTTGCTGCTTACGTTTCATTCTGCTTATGATCAGCCATTAGATCCGCTTATATTTGATTTTGTGAGACCTCAGGAGGCTATCTGTGCTCATCCAGTGAGACCCTTACAGACATATCGCCGCAGATCCCAGGACAGCTCACACGGCACCAACAGACAGGATACTTCCCAAGCTTGGCTGTGGGTTACAGCATCC
AGCCAGACATATCTCAGACCAGATCTTCCTGCTCTTCCAGATCCTCTGACCAATCATCTGATAGGAGTTTCTTCTTTATGGTCTCAGATGTTAGAGTGATAGTATCAGGGGGTGTTGAGATTTCCTAGGCATGACATCCTCCACTGGAGATTTGGTGCTTTTGGTGTTTGGTTCTCTGCAGTACTTGCACATAACTGCCG
TACCGCTTCGTTTTCCTGCTCCATTATTTGACTTTAGATCTTATTCACCATAGAATAGCTCTGATTATATCATCATTTTCTAGGAGTGGCCTTTGCACTCTCATTTTGTATCTAACACTGTTGTACTTAGCAGTCCCATTGACCTATTTGTAGTCATTTGTTGTACATTAATAGAATTAATTTCTCATTTTATAACAGAT
ATGAAGTTTTATCTGGAGTCAATATCAGAGAACTGTATTGTCTGGACTCTGGAGGATGCTCATGCGAATTGATCATTTCAATTTATCCTCTGCTGTGAGGGTTCGTGTCAGCCACTGTGCAGAATCTTGCTTCTTTCTTCTCTTGGATAATTCTTAATTTAATGTCAAGTTTGTGTTGTTAGACACAAATACTCAGGCTT
CTATTGCAGAAATTGCAAGGACAAAAATTTCCTAGGTTTTGTTGAGCAGTGTTCTTCTACCAATAAGACCTGGAGTAAAAATGGATACTAAAATTGCATATCCAAATCTCAACATAGCTCGACTTGGTGAACTTTGTCAATGTAAGATCTGGGCAAAGATGGATTTATGTTACAAGACCTTAGAATGAGATTTTATAAAT
GTACTTGTAGGTTGAAAATGTTCATATTTGGAAATAACTCTTCAGAACAATTATAAAGATACTGCTGGATTTAGGACAATTCCACTGTAATAGTTGTCACTTTCTGTTTAATCTCTTGTTGGAAAAAGGAAACCACTCTGATACTAACAATGCATCTTGAACATGTATAAATGACACAGAGAATGGATTTATGGAGGATA
TTCTCTTCTTGCTCAAGAAGCATTGTCTATTGCTATACATGGTGACGTTTTGCCCAAATAAG
>TRINITY_DN42439_c0_g1_i10 from sample A6 / Example unspliced isoform:GTTAAAGAAAGAACAATTTTATCGGTTTTTGGTGGGGCTCCCCTGCTGGGCGTGCTGCAGCCTTTCTTGACGCTGACCGCGGATTTATCACTTCGCAACATTCCGTGTCTGTCTCCCTTCGTAGAAAGAGTCTGCAAGACGGTGCGgtaagaaaattcaaattcttctgagccacttaactgctacaaatcttcctggaa
cgttcctaacatattatatcccgtccttaaactatttctgcaaattttcaacaaaaccagaccgacaaatgggaatccattattattttggtctgtgtggagttttcctctctgctcacaaagcttcgtagaacgttcctactactcggttctgcttgtcttcttctttgcaagtttagtacaaaactagaccgatccat
atgggactccattatcaatgtaatgtatattcctgtggagttgtccatgcaatgatagtgagaacgattctgttttcctctgctactggcaattcaaattctcatatcaaagtcatttacagGTTTTTGAGAGCTGAGGGAAATAGATTGTGTGTTAAAATGGCAAATGATTTGGTTTCCCGCACGGGACGCCTCCGGCA
GCGCTATGATAACCAGTGCCGCCTTGTTGCAGGGTGCATTCCATACAGGTACAAGGAGCCTGCCGAGGCTTGCAGTGGTACAGCGAAGCAGGAATTGGAGGTGCTGATGATTTTTTCACGTAGTGGAAAGGCACTTCTCTTCCCGAAGGGTGGTTGGGAGAACGATGAATCAGTACAGGAGGCAGCATGCAGAGAAGCTT
TTGAAGAAGCAGGGGTTCGAGGGATTATCAAAGAAGATTTGGGATCCTGGGAAGATGACAGGGGCCTAGAAGGTTTTCACAGAACCCATATGTTTGCATTGCTTGTTACTGAAGAACTGGATTCATGGCCTGAACAAGATGAACGTCAACGAAAATGGGTTACTATTACAGAGGCAGATGCAGGATGTAAGCATGACTGG
ATGCGACAAGCTCTTCATAGTTGTGTGACTTATCTTTCCAGCATACAGGTATTCTCATCTTCACTGCCAGAATCGGGCAAGGGTCCTGAATCTCCTAATCATTCATCTCAAATATAAGACCAAGAACAGTTGTGACTCTCATTTATCAATCCCTGGAGAAAAGGAATTTTCAAGATGGAAAATGTTGCTGCTTACGTTTC
ATTCTGCTTATGATCAGCCATTAGATCCGCTTATATTTGATTTTGTGAGACCTCAGGAGGCTATCTGTGCTCATCCAGTGAGACCCTTACAGACATATCGCCGCAGATCCCAGGACAGCTCACACGGCACCAACAGACAGGATACTTCCCAAGCTTGGCTGTGGGTTACAGCATCCAGCCAGACATATCTCAGACCAGAT
CTTCCTGCTCTTCCAGATCCTCTGACCAATCATCTGATAGGAGTTTCTTCTTTATGGTCTCAGATGTTAGAGTGATAGTATCAGGGGGTGTTGAGATTTCCTAGGCATGACATCCTCCACTGGAGATTTGGTGCTTTTGGTGTTTGGTTCTCTGCAGTACTTGCACATAACTGCCGTACCGCTTCGTTTTCCTGCTCCAT
TATTTGACTTTAGATCTTATTCACCATAGAATAGCTCTGATTATATCATCATTTTCTAGGAGTGGCCTTTGCACTCTCATTTTGTATCTAACACTGTTGTACTTAGCAGTCCCATTGACCTATTTGTAGTCATTTGTTGTACATTAATAGAATTAATTTCTCATTTTATAACAGATATGAAGTTTTATCTGGAGTCAATA
TCAGAGAACTGTATTGTCTGGACTCTGGAGGATGCTCATGCGAATTGATCATTTCAATTTATCCTCTGCTGTGAGGGTTCGTGTCAGCCACTGTGCAGAATCTTGCTTCTTTCTTCTCTTGGATAATTCTTAATTTAATGTCAAGTTTGTGTTGTTAGACACAAATACTCAGGCTTCTATTGCAGAAATTGCAAGGACAA
AAATTTCCTAGGTTTTGTTGAGCAGTGTTCTTCTACCAATAAGACCTGGAGTAAAAATGGATACTAAAATTGCATATCCAAATCTCAACATAGCTCGACTTGGTGAACTTTGTCAATGTAAGATCTGGGCAAAGATGGATTTATGTTACAAGACCTTAGAATGAGATTTTATAAATGTACTTGTAGGTTGAAAATGTTCA
TATTTGGAAATAACTCTTCAGAACAATTATAAAGATACTGCTGGATTTAGGACAATTCCACTGTAATAGTTGTCACTTTCTGTTTAATCTCTTGTTGGAAAAAGGAAACCACTCTGATACTAACAATGCATCTTGAACATGTATAAATGACACAGAGAATGGATTTATGGAGGATATTCTCTTCTTGCTCAAGAAGCATT
GTCTATTGCTATACATGGTGACGTTTTGCCCAAATAAG
Intron 3 GTATTCTCAT ... GAGACCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.48 | 57 | 42 | 18 |
| A2 | 30.61 | 51 | 17 | 28 |
| A3 | 27.54 | 50 | 28 | 10 |
| A4 | 39.6 | 45 | 28 | 31 |
| A5 | 28.4 | 29 | 14 | 9 |
| A6 | 26.17 | 428.9 | 147 | 157 |
| A7 | 29.77 | 392 | 153.3 | 179 |
| A8 | 32.36 | 397.2 | 162 | 218 |
| A9 | 31.3 | 360 | 146 | 182 |
| A10 | 30.3 | 286.5 | 115 | 134 |
>TRINITY_DN117392_c4_g1_i10 from sample A2 / Example spliced isoformGTTAAAGAAAGAACAATTTTATCGGTTTTTGGTGGGGCTCCCCTGCTGGGCGTGCTGCAGCCTTTCTTGACGCTGACCGCGGATTTATCACTTCGCAACATTCCGTGTCTGTCTCCCTTCGTAGAAAGAGTCTGCAAGACGGTGCGGTAAGAAAATTCAAATTCTTCTGAGCCACTTAACTGCTACAAATCTTCCTGGAA
CGTTCCTAACATATTATATCCCGTCCTTAAACTATTTCTGCAAATTTTCAACAAAACCAGACCGACAAATGGGAATCCATTATTATTTTGGTCTGTGTGGAGTTTTCCTCTCTGCTCACAAAGCTTCGTAGAACGTTCCTACTACTCGGTTCTGCTTGTCTTCTTCTTTGCAAGTTTAGTACAAAACTAGACCGATCCAT
ATGGGACTCCATTATCAATGTTTTTGAGAGCTGAGGGAAATAGATTGCGTGTTAAAATGGCAAATGATTTGGTTTCCCGCACGGGACGCCTCCGGCAGCGCTATGATAACCAGTGCCGCCTTGTTGCAGGGTGCATTCCATACAGGTACAAGGAGCCTGCCGAGGCTTGCAGTGGTACAGCGAAGCAGGAATTGGAGGTG
CTGATGATTTTTTCACGTAGTGGAAAGGCACTTCTCTTCCCGAAGGGTGGTTGGGAGAATGATGAATCAGTACAGGAGGCAGCATGCAGAGAAGCTTTTGAAGAAGCAGGGGTTCGAGGGATTATCAAAGAAGATTTGGGATCCTGGGAAGATGACAGGGGCCTAGAAGGTTGTCACAGAACCCATATGTTTGCATTGCT
TGTTACTGAAGAACTGGATTCATGGCCTGAACAAGATGAACGTCAACGAAAATGGGTTACTATTACAGAGGCAGATGCAGGATGTAAGCATGACTGGATGCGACAAGCTCTTCATAGTTGTGTGACTTATCTTTCCAGCATACAGGAGGCTATCTGTGCTCATCCAGTGAGACCCTTACAGACATATCGCCGCAGATCCC
AGGACAGCTCACACGGCACCAACAGACAGGATACTTCCCAAGCTTGGCTGTGGGTTACAGCATCCAGCCAGACATATCTCAGACCAGATCTTCCTGCTCTTCCAGATCCTCTGACCAATCATCTAATAGGAGTTTCTTCTTTATGGTCTCAGATGTTAGAGTGATAGTATCAGGGGGTGTTGAGATTTCCTAGGCATGAC
ATCCTCCACTGGAGATTTGGTGCTTTTGGTGTTTGGTTCTCTGCAGTACTTGCACATAACTGCCGTACCGCTTCGTTTTCCTGCTCCATTATTTGACTTTAGATCTTATTCACCATAGAATAGCTCTGATTATATCATCATTTTCTAGGAGTGGCCTTTGCACTCTCATTTTGTATCTAACACTGTTGTACTTAGCAGTC
CCATTGACCTATTTGTAGTCATTTGTTGTACATTAATAAAATTAATTTCTCATTTTAT
>TRINITY_DN117392_c4_g1_i5 from sample A2 / Example unspliced isoform:GTTAAAGAAAGAACAATTTTATCGGTTTTTGGTGGGGCTCCCCTGCTGGGCGTGCTGCAGCCTTTCTTGACGCTGACCGCGGATTTATCACTTCGCAACATTCCGTGTCTGTCTCCCTTCGTAGAAAGAGTCTGCAAGACGGTGCGGTAAGAAAATTCAAATTCTTCTGAGCCACTTAACTGCTACAAATCTTCCTGGAA
CGTTCCTAACATATTATATCCCGTCCTTAAACTATTTCTGCAAATTTTCAACAAAACCAGACCGACAAATGGGAATCCATTATTATTTTGGTCTGTGTGGAGTTTTCCTCTCTGCTCACAAAGCTTCGTAGAACGTTCCTACTACTCGGTTCTGCTTGTCTTCTTCTTTGCAAGTTTAGTACAAAACTAGACCGATCCAT
ATGGGACTCCATTATCAATGTAATGTATATTCCTGTGGAGTTGTCCATGCCATGATAGTGAGAACGATTCTGTTTTCCTCTGCTACTGGCAATTCAAATTCTCATATCAAAGTCATTTACAGGTTTTTGAGAGCTGAGGGAAATAGATTGCGTGTTAAAATGGCAAATGATTTGGTTTCCCGCACGGGACGCCTCCGGCA
GCGCTATGATAACCAGTGCCGCCTTGTTGCAGGGTGCATTCCATACAGGTACAAGGAGCCTGCCGAGGCTTGCAGTGGTACAGCGAAGCAGGAATTGGAGGTGCTGATGATTTTTTCACGTAGTGGAAAGGCACTTCTCTTCCCGAAGGGTGGTTGGGAGAACGATGAATCAGTACAGGAGGCAGCATGCAGAGAAGCTT
TTGAAGAAGCAGGGGTTCGAGGGATTATCAAAGAAGATTTGGGATCCTGGGAAGATGACAGGGGCCTAGAAGGTTGTCACAGAACCCATATGTTTGCATTGCTTGTTACTGAAGAACTGGATTCATGGCCTGAACAAGATGAACGTCAACGAAAATGGGTTACTATTACAGAGGCAGATGCAGGATGTAAGCATGACTGG
ATGCGACAAGCTCTTCATAGTTGTGTGACTTATCTTTCCAGCATACAGgtattctcatcttcactgccagaatcgggcaagggtcctgaatctcctaatcattcatctcaaatataagaccaagaacagttgtgactttcatttatcaatccctggagaaaaggaattttcaagatggaaaatgttgctgcttacgtttc
attctgcttatgatcagccattagatccgcttatatttgattttgtgagacctcagGAGGCTATCTGTGCTCATCCAGTGAGACCCTTACAGACATATCGCCGCAGATCCCAGGACAGCTCACACGGCACCAACAGACAGGATACTTCCCAAGCTTGGCTGTGGGTTACAGCATCCAGCCAGACATATCTCAGACCAGAT
CTTCCTGCTCTTCCAGATCCTCTGACCAATCATCTAATAGGAGTTTCTTCTTTATGGTCTCAGATGTTAGAGTGATAGTATCAGGGGGTGTTGAGATTTCCTAGGCATGACATCCTCCACTGGAGATTTGGTGCTTTTGGTGTTTGGTTCTCTGCAGTACTTGCACATAACTGCCGTACCGCTTCGTTTTCCTGCTCCAT
TATTTGACTTTAGATCTTATTCACCATAGAATAGCTCTGATTATATCATCATTTTCTAGGAGTGGCCTTTGCACTCTCATTTTGTATCTAACACTGTTGTACTTAGCAGTCCCATTGACCTATTTGTAGTCATTTGTTGTACATTAATAAAATTAATTTCTCATTTTAT
Intron 4 GTAAGAAAAA ... TCATTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 36.06 | 40.8 | 31 | 15 |
| A2 | 37.9 | 53.4 | 34 | 31 |
| A3 | 41.24 | 59.2 | 43 | 40 |
| A4 | 46.64 | 30.2 | 14 | 38 |
| A5 | 48.14 | 12.4 | 19 | 4 |
| A6 | 33.78 | 191.4 | 97 | 98 |
| A7 | 27.75 | 245 | 108.2 | 80 |
| A8 | 28.54 | 152.8 | 75 | 47 |
| A9 | 30.62 | 260.6 | 129 | 101 |
| A10 | 29.16 | 286.8 | 151 | 85 |
>TRINITY_DN121829_c2_g1_i7 from sample A1 / Example spliced isoformCTGTGTACAGTTAAAGAAAGAACAATTTTATCGGTTTTTGGTGGGGCTCCCCTGCTGGGCGTGCTGCAGCCTTTCTTGACGCTGACCGCGGATTTATCACTTCGCAACATTCCGTGTCTGTCTCCCTTCGCAGAAAGAGTCTGCAATACGGTGCGGTTTTTGAGAGCTGAGGGAAATAGATTGCGTGTTAAAATGGCAAA
TGATTTGGTTTCCCGCACGGGACGCCTCCGGCAGCGCTATGATAACCAGTGCCGCCTTGTTGCAGGGTACAAGGAGCCTGCCGAGGCTTGCAGTGGTACAGCGAAGCAGGAATTGGAGGTGCTGATGATTTTTTCACGTAGTGGAAAGGCACTTCTCTTCCCGAAGGGTGGTTGGGAGAACGATGAATCAGTACAGGAGG
CAGCATGCAGAGAAGCTTTTGAAGAAGCAGGGGTTCGAGGGATTATCAAAGAAGATTTGGGATCCTGGGAAGATGACAGGGGCCTAGAAGGTTTTCACAGAACCCATATGTTTGCATTGCTTGTTACTGAAGAACTGGATTCATGGCCTGAACAAGATGAACGTCAACGAAAATGGGTTACTATTACAGAGGCAGATGCA
GGATGTAAGCATGACTGGATGCGACAAGCTCTTCATAGTTGTGTGACTTATCTTTCCAGCATACAGGAGGCTATCTGTGCTCATCCAGTGAGACCCTTACAGACATATCGCCGCAGATCCCAGGACAGCTCACACGGCACCAACAGACAGGATACTTCCCAAGCTTGGCTGTGGGTTACAGCATCCAGCCAGACATATCT
CAGACCAGATCTTCCTGCTCTTCCAGATCCTCTGACCAATCATCTAATAGGAGTTTCTTCTTTATGGTCTCAGATGTTAGAGTGATAGTATCAGGGGGTGTTGAGATTTCCTAGGCATGACATCCTCCACTGGAGATTTGGTGCTTTTGGTGTTTGGTTCTCTGCAGTACTTGCACATAACTGCCGTACCGCTTCGTTTT
CCTGCTCCATTATTTGACTTTAGATCTTATTCACCATAGAATAGCTCTGATTATATCATCATTTTCTAGGAGTGGCCTTTGCACTCTCATTTTGTATCTAACACTGTTGTACTTAGCAGTCCCATTGACCTATTTGT
>TRINITY_DN121829_c2_g1_i20 from sample A1 / Example unspliced isoform:CTGTGTACAGTTAAAGAAAGAACAATTTTATCGGTTTTTGGTGGGGCTCCCCTGCTGGGCGTGCTGCAGCCTTTCTTGACGCTGACCGCGGATTTATCACTTCGCAACATTCCGTGTCTGTCTCCCTTCGCAGAAAGAGTCTGCAATACGGTGCGgtaagaaaaattcaaattcttctcagccacttaactgcatacaaa
tcttcctggaacgttcctaacatagtatatcccgtccttaaactatttctgcaaattttcaacaaaaccagaccgacaaatgggaatccattattattttggtctgtgtggagttttcctctctgctcacaaagcttcgtagaacgttcctactactcggttctgcttgtcttcttctttgcaagtttagtacaaaacta
gaccgatccatatgggactccattatcaatgtaatgtatattcctgtggagttgtccatgccatgatagtgagaacgattctgttttcctctgctactggcaattcaaattctcatatcaaagtcatttacagGTTTTTGAGAGCTGAGGGAAATAGATTGCGTGTTAAAATGGCAAATGATTTGGTTTCCCGCACGGGA
CGCCTCCGGCAGCGCTATGATAACCAGTGCCGCCTTGTTGCAGGGTGCATTCCATACAGGTACAAGGAGCCTGCCGAGGCTTGCAGTGGTACAGCGAAGCAGGAATTGGAGGTGCTGATGATTTTTTCACGTAGTGGAAAGGCACTTCTCTTCCCGAAGGGTGGTTGGGAGAACGATGAATCAGTACAGGAGGCAGCATG
CAGAGAAGCTTTTGAAGAAGCAGGGGTTCGAGGGATTATCAAAGAAGATTTGGGATCCTGGGAAGATGACAGGGGCCTAGAAGGTTTTCACAGAACCCATATGTTTGCATTGCTTGTTACTGAAGAACTGGATTCATGGCCTGAACAAGATGAACGTCAACGAAAATGGGTTACTATTACAGAGGCAGATGCAGGATGTA
AGCATGACTGGATGCGACAAGCTCTTCATAGTTGTGTGACTTATCTTTCCAGCATACAGGTATTCTCATCTTCACTGCCAGAATCGGGCAAGGGTCCTGAATCTCCTAATCATTCATCTCAAATATAAGACCAAGAACAGTTGTGACTTTCATTTATCAATCCCTGGAGAAAAAGGAATTTTCAAGATGGAAAATGTTGC
TGCTTACGTTTCATTCTGCTTATGATCAGCCATTAGATCCGCTTATATTTGATTTTGTGAGACCTCAGGAGGCTATCTGTGCTCATCCAGTGAGACCCTTACAGACATATCGCCGCAGATCCCAGGACAGCTCACACGGCACCAACAGACAGGATACTTCCCAAGCTTGGCTGTGGGTTACAGCATCCAGCCAGACATAT
CTCAGACCAGATCTTCCTGCTCTTCCAGATCCTCTGACCAATCATCTAATAGGAGTTTCTTCTTTATGGTCTCAGATGTTAGAGTGATAGTATCAGGGGGTGTTGAGATTTCCTAGGCATGACATCCTCCACTGGAGATTTGGTGCTTTTGGTGTTTGGTTCTCTGCAGTACTTGCACATAACTGCCGTACCGCTTCGTT
TTCCTGCTCCATTATTTGACTTTAGATCTTATTCACCATAGAATAGCTCTGATTATATCATCATTTTCTAGGAGTGGCCTTTGCACTCTCATTTTGTATCTAACACTGTTGTACTTAGCAGTCCCATTGACCTATTTGTAGTCATTTGTTGTACATTAATAGAATTAATTTCTCATTTTATAACAGATATGAAGTTTTAT
CTGGAGTCAATATCAGAGAACTGTATTGTCTGGACTCTGGAGGATGCTCATGCGAATTGATCATTTCAATTTATCCTCTGCTGTGAGGGTTCGTGTCAGCCACTGTGCAGAATCTTGCTTCTTTCTTCTCTTGGATAATTCTTAATTTAATGTCAAGTTTGTGTTGTTAGACACAAATACTCAGGCTTCTATTGCAGAAA
TTGCAAGGACAAAAATTTCCTAGGTTTTGTTGAGCAGTGTTCTTCTACCAATAAGACCTGGAGTAAAAATGGATACTAAAATTGCATATCCAAATCTCAACATAGCTCGACTTGGTGAACTTTGTCAATGTAAGATCTGGGCAAAGATGGATTTATGTTACAAGACCTTAGAATGAGATTTTATAAATGTACTTGTAGGT
TGAAAATGTTCATATTTGGAAATAACTCTTCAGAACAATTATAAAGATACTGCTGGAT
Intron 5 GTATTCTCAT ... TTTATAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.49 | 22 | 42 | 20 |
| A2 | 52.63 | 9 | 17 | 3 |
| A3 | 58.97 | 16 | 28 | 18 |
| A4 | 70.37 | 8 | 28 | 10 |
| A5 | 56.86 | 11 | 14 | 15 |
| A6 | 58.7 | 89 | 147 | 106 |
| A7 | 55.97 | 107 | 153 | 119 |
| A8 | 59.74 | 122 | 161 | 201 |
| A9 | 55 | 108 | 146 | 118 |
| A10 | 60 | 62 | 115 | 71 |
>TRINITY_DN121829_c2_g1_i2 from sample A1 / Example spliced isoformCTGTGTACAGTTAAAGAAAGAACAATTTTATCGGTTTTTGGTGGGGCTCCCCTGCTGGGCGTGCTGCAGCCTTTCTTGACGCTGACCGCGGATTTATCACTTCGCAACATTCCGTGTCTGTCTCCCTTCGTAGAAAGAGTCTGCAAGACGGTGCGGTTTTTGAGAGCTGAGGGAAATAGATTGCGTGTTAAAATGGCAAA
TGATTTGGTTTCCCGCACGGGACGCCTCCGGCAGCGCTATGATAACCAGTGCCGCCTTGTTGCAGGGTGCATTCCATACAGGTACAAGGAGCCTGCCGAGGCTTGCAGTGGTACAGCGAAGCAGGAATTGGAGGTGCTGATGATTTTTTCACGTAGTGGAAAGGCACTTCTCTTCCCGAAGGGTGGTTGGGAGAACGATG
AATCAGTACAGGAGGCAGCATGCAGAGAAGCTTTTGAAGAAGCAGGGGTTCGAGGGATTATCAAAGAAGATTTGGGATCCTGGGAAGATGACAGGGGCCTAGAAGGTTTTCACAGAACCCATATGTTTGCATTGCTTGTTACTGAAGAACTGGATTCATGGCCTGAACAAGATGAACGTCAACGAAAATGGGTTACTATT
ACAGAGGCAGATGCAGGATGTAAGCATGACTGGATGCGACAAGCTCTTCATAGTTGTGTGACTTATCTTTCCAGCATACAGATATGAAGTTTTATCTGGAGTCAATATCAGAGAACTGTATTGTCTGGACTCTGGAGGATGCTCATGCGAATTGATCATTTCAATTTATCCTCTGCTGTGAGGGTTCGTGTCAGCCACTG
TGCAGAATCTTGCTTCTTTCTTCTCTTGGATAATTCTTAATTTAATGTCAAGTTTGTGTTGTTAGACACAAATACTCAGGCTTCTATTGCAGAAATTGCAAGGACAAAAATTTCCTAGGTTTTGTTGAGCAGTGTTCTTCTACCAATAAGACCTGGAGTAAAAATGGATACTAAAATTGCATATCCAAATCTCAACATAG
CTCGACTTGGTGAACTTTGTCAATGTAAGATCTGGGCAAAGATGGATTTATGTTACAAGACCTTAGAATGAGATTTTATAAATGTACTTGTAGGTTGAAAATGTTCATATTTGGAAATAACTCTTCAGAACAATTATAAAGATACTGCTGGAT
>TRINITY_DN121829_c2_g1_i19 from sample A1 / Example unspliced isoform:CTGTGTACAGTTAAAGAAAGAACAATTTTATCGGTTTTTGGTGGGGCTCCCCTGCTGGGCGTGCTGCAGCCTTTCTTGACGCTGACCGCGGATTTATCACTTCGCAACATTCCGTGTCTGTCTCCCTTCGTAGAAAGAGTCTGCAAGACGGTGCGGTTTTTGAGAGCTGAGGGAAATAGATTGCGTGTTAAAATGGCAAA
TGATTTGGTTTCCCGCACGGGACGCCTCCGGCAGCGCTATGATAACCAGTGCCGCCTTGTTGCAGGGTGCATTCCATACAGGTACAAGGAGCCTGCCGAGGCTTGCAGTGGTACAGCGAAGCAGGAATTGGAGGTGCTGATGATTTTTTCACGTAGTGGAAAGGCACTTCTCTTCCCGAAGGGTGGTTGGGAGAACGATG
AATCAGTACAGGAGGCAGCATGCAGAGAAGCTTTTGAAGAAGCAGGGGTTCGAGGGATTATCAAAGAAGATTTGGGATCCTGGGAAGATGACAGGGGCCTAGAAGGTTTTCACAGAACCCATATGTTTGCATTGCTTGTTACTGAAGAACTGGATTCATGGCCTGAACAAGATGAACGTCAACGAAAATGGGTTACTATT
ACAGAGGCAGATGCAGGATGTAAGCATGACTGGATGCGACAAGCTCTTCATAGTTGTGTGACTTATCTTTCCAGCATACAGgtattctcatcttcactgccagaatcgggcaagggtcctgaatctcctaatcattcatctcaaatataagaccaagaacagttgtgactttcatttatcaatccctggagaaaaaggaa
ttttcaagatggaaaatgttgctgcttacgtttcattctgcttatgatcagccattagatccgcttatatttgattttgtgagacctcaggaggctatctgtgctcatccagtgagacccttacagacatatcgccgcagatcccaggacagctcacacggcaccaacagacaggatacttcccaagcttggctgtgggt
tacagcatccagccagacatatctcagaccagatcttcctgctcttccagatcctctgaccaatcatctaataggagtttcttctttatggtctcagatgttagagtgatagtatcagggggtgttgagatttcctaggcatgacatcctccactggagatttggtgcttttggtgtttggttctctgcagtacttgcac
ataactgccgtaccgcttcgttttcctgctccattatttgactttagatcttattcaccatagaatagctctgattatatcatcattttctaggagtggcctttgcactctcattttgtatctaacactgttgtacttagcagtcccattgacctatttgtagtcatttgttgtacattaatagaattaatttctcattt
tataacagATATGAAGTTTTATCTGGAGTCAATATCAGAGAACTGTATTGTCTGGACTCTGGAGGATGCTCATGCGAATTGATCATTTCAATTTATCCTCTGCTGTGAGGGTTCGTGTCAGCCACTGTGCAGAATCTTGCTTCTTTCTTCTCTTGGATAATTCTTAATTTAATGTCAAGTTTGTGTTGTTAGACACAAAT
ACTCAGGCTTCTATTGCAGAAATTGCAAGGACAAAAATTTCCTAGGTTTTGTTGAGCAGTGTTCTTCTACCAATAAGACCTGGAGTAAAAATGGATACTAAAATTGCATATCCAAATCTCAACATAGCTCGACTTGGTGAACTTTGTCAATGTAAGATCTGGGCAAAGATGGATTTATGTTACAAGACCTTAGAATGAGA
TTTTATAAATGTACTTGTAGGTTGAAAATGTTCATATTTGGAAATAACTCTTCAGAACAATTATAAAGATACTGCTGGAT
Intron 6 GTATTCTCAT ... GAGACCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.48 | 57 | 42 | 18 |
| A2 | 30.61 | 51 | 17 | 28 |
| A3 | 27.54 | 50 | 28 | 10 |
| A4 | 39.6 | 45 | 28 | 31 |
| A5 | 28.4 | 29 | 14 | 9 |
| A6 | 26.16 | 429 | 147 | 157 |
| A7 | 29.78 | 392 | 153.5 | 179 |
| A8 | 32.39 | 396.8 | 162.2 | 218 |
| A9 | 31.3 | 360 | 146 | 182 |
| A10 | 30.3 | 286.5 | 115 | 134 |
>TRINITY_DN121829_c2_g1_i3 from sample A1 / Example spliced isoformCTGTGTACAGTTAAAGAAAGAACAATTTTATCGGTTTTTGGTGGGGCTCCCCTGCTGGGCGTGCTGCAGCCTTTCTTGACGCTGACCGCGGATTTATCACTTCGCAACATTCCGTGTCTGTCTCCCTTCGCAGAAAGAGTCTGCAATACGGTGCGGTAAGAAAAATTCAAATTCTTCTCAGCCACTTAACTGCATACAAA
TCTTCCTGGAACGTTCCTAACATAGTATATCCCGTCCTTAAACTATTTCTGCAAATTTTCAACAAAACCAGACCGACAAATGGGAATCCATTATTATTTTGGTCTGTGTGGAGTTTTCCTCTCTGCTCACAAAGCTTCGTAGAACGTTCCTACTACTCGGTTCTGCTTGTCTTCTTCTTTGCAAGTTTAGTACAAAACTA
GACCGATCCATATGGGACTCCATTATCAATGTAATGTATATTCCTGTGGAGTTGTCCATGCCATGATAGTGAGAACGATTCTGTTTTCCTCTGCTACTGGCAATTCAAATTCTCATATCAAAGTCATTTACAGGTTTTTGAGAGCTGAGGGAAATAGATTGCGTGTTAAAATGGCAAATGATTTGGTTTCCCGCACGGGA
CGCCTCCGGCAGCGCTATGATAACCAGTGCCGCCTTGTTGCAGGGTGCATTCCATACAGGTACAAGGAGCCTGCCGAGGCTTGCAGTGGTACAGCGAAGCAGGAATTGGAGGTGCTGATGATTTTTTCACGTAGTGGAAAGGCACTTCTCTTCCCGAAGGGTGGTTGGGAGAACGATGAATCAGTACAGGAGGCAGCATG
CAGAGAAGCTTTTGAAGAAGCAGGGGTTCGAGGGATTATCAAAGAAGATTTGGGATCCTGGGAAGATGACAGGGGCCTAGAAGGTTTTCACAGAACCCATATGTTTGCATTGCTTGTTACTGAAGAACTGGATTCATGGCCTGAACAAGATGAACGTCAACGAAAATGGGTTACTATTACAGAGGCAGATGCAGGATGTA
AGCATGACTGGATGCGACAAGCTCTTCATAGTTGTGTGACTTATCTTTCCAGCATACAGGAGGCTATCTGTGCTCATCCAGTGAGACCCTTACAGACATATCGCCGCAGATCCCAGGACAGCTCACACGGCACCAACAGACAGGATACTTCCCAAGCTTGGCTGTGGGTTACAGCATCCAGCCAGACATATCTCAGACCA
GATCTTCCTGCTCTTCCAGATCCTCTGACCAATCATCTAATAGGAGTTTCTTCTTTATGGTCTCAGATGTTAGAGTGATAGTATCAGGGGGTGTTGAGATTTCCTAGGCATGACATCCTCCACTGGAGATTTGGTGCTTTTGGTGTTTGGTTCTCTGCAGTACTTGCACATAACTGCCGTACCGCTTCGTTTTCCTGCTC
CATTATTTGACTTTAGATCTTATTCACCATAGAATAGCTCTGATTATATCATCATTTTCTAGGAGTGGCCTTTGCACTCTCATTTTGTATCTAACACTGTTGTACTTAGCAGTCCCATTGACCTATTTGTAGTCATTTGTTGTACATTAATAGAATTAATTTCTCATTTTATAACAGATATGAAGTTTTATCTGGAGTCA
ATATCAGAGAACTGTATTGTCTGGACTCTGGAGGATGCTCATGCGAATTGATCATTTCAATTTATCCTCTGCTGTGAGGGTTCGTGTCAGCCACTGTGCAGAATCTTGCTTCTTTCTTCTCTTGGATAATTCTTAATTTAATGTCAAGTTTGTGTTGTTAGACACAAATACTCAGGCTTCTATTGCAGAAATTGCAAGGA
CAAAAATTTCCTAGGTTTTGTTGAGCAGTGTTCTTCTACCAATAAGACCTGGAGTAAAAATGGATACTAAAATTGCATATCCAAATCTCAACATAGCTCGACTTGGTGAACTTTGTCAATGTAAGATCTGGGCAAAGATGGATTTATGTTACAAGACCTTAGAATGAGATTTTATAAATGTACTTGTAGGTTGAAAATGT
TCATATTTGGAAATAACTCTTCAGAACAATTATAAAGATACTGCTGGAT
>TRINITY_DN121829_c2_g1_i19 from sample A1 / Example unspliced isoform:CTGTGTACAGTTAAAGAAAGAACAATTTTATCGGTTTTTGGTGGGGCTCCCCTGCTGGGCGTGCTGCAGCCTTTCTTGACGCTGACCGCGGATTTATCACTTCGCAACATTCCGTGTCTGTCTCCCTTCGTAGAAAGAGTCTGCAAGACGGTGCGGTTTTTGAGAGCTGAGGGAAATAGATTGCGTGTTAAAATGGCAAA
TGATTTGGTTTCCCGCACGGGACGCCTCCGGCAGCGCTATGATAACCAGTGCCGCCTTGTTGCAGGGTGCATTCCATACAGGTACAAGGAGCCTGCCGAGGCTTGCAGTGGTACAGCGAAGCAGGAATTGGAGGTGCTGATGATTTTTTCACGTAGTGGAAAGGCACTTCTCTTCCCGAAGGGTGGTTGGGAGAACGATG
AATCAGTACAGGAGGCAGCATGCAGAGAAGCTTTTGAAGAAGCAGGGGTTCGAGGGATTATCAAAGAAGATTTGGGATCCTGGGAAGATGACAGGGGCCTAGAAGGTTTTCACAGAACCCATATGTTTGCATTGCTTGTTACTGAAGAACTGGATTCATGGCCTGAACAAGATGAACGTCAACGAAAATGGGTTACTATT
ACAGAGGCAGATGCAGGATGTAAGCATGACTGGATGCGACAAGCTCTTCATAGTTGTGTGACTTATCTTTCCAGCATACAGgtattctcatcttcactgccagaatcgggcaagggtcctgaatctcctaatcattcatctcaaatataagaccaagaacagttgtgactttcatttatcaatccctggagaaaaaggaa
ttttcaagatggaaaatgttgctgcttacgtttcattctgcttatgatcagccattagatccgcttatatttgattttgtgagacctcagGAGGCTATCTGTGCTCATCCAGTGAGACCCTTACAGACATATCGCCGCAGATCCCAGGACAGCTCACACGGCACCAACAGACAGGATACTTCCCAAGCTTGGCTGTGGGT
TACAGCATCCAGCCAGACATATCTCAGACCAGATCTTCCTGCTCTTCCAGATCCTCTGACCAATCATCTAATAGGAGTTTCTTCTTTATGGTCTCAGATGTTAGAGTGATAGTATCAGGGGGTGTTGAGATTTCCTAGGCATGACATCCTCCACTGGAGATTTGGTGCTTTTGGTGTTTGGTTCTCTGCAGTACTTGCAC
ATAACTGCCGTACCGCTTCGTTTTCCTGCTCCATTATTTGACTTTAGATCTTATTCACCATAGAATAGCTCTGATTATATCATCATTTTCTAGGAGTGGCCTTTGCACTCTCATTTTGTATCTAACACTGTTGTACTTAGCAGTCCCATTGACCTATTTGTAGTCATTTGTTGTACATTAATAGAATTAATTTCTCATTT
TATAACAGATATGAAGTTTTATCTGGAGTCAATATCAGAGAACTGTATTGTCTGGACTCTGGAGGATGCTCATGCGAATTGATCATTTCAATTTATCCTCTGCTGTGAGGGTTCGTGTCAGCCACTGTGCAGAATCTTGCTTCTTTCTTCTCTTGGATAATTCTTAATTTAATGTCAAGTTTGTGTTGTTAGACACAAAT
ACTCAGGCTTCTATTGCAGAAATTGCAAGGACAAAAATTTCCTAGGTTTTGTTGAGCAGTGTTCTTCTACCAATAAGACCTGGAGTAAAAATGGATACTAAAATTGCATATCCAAATCTCAACATAGCTCGACTTGGTGAACTTTGTCAATGTAAGATCTGGGCAAAGATGGATTTATGTTACAAGACCTTAGAATGAGA
TTTTATAAATGTACTTGTAGGTTGAAAATGTTCATATTTGGAAATAACTCTTCAGAACAATTATAAAGATACTGCTGGAT
Intron 7 GTAAGAAAAA ... TCATTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.95 | 41 | 31 | 15 |
| A2 | 38.59 | 52 | 34 | 31 |
| A3 | 41.98 | 57.5 | 43 | 40 |
| A4 | 49.33 | 27.5 | 14 | 38 |
| A5 | 47.94 | 12.5 | 19 | 4 |
| A6 | 34.28 | 187.5 | 97 | 98 |
| A7 | 27.96 | 243.5 | 109 | 80 |
| A8 | 28.79 | 151 | 75 | 47 |
| A9 | 30.84 | 258 | 129 | 101 |
| A10 | 29.3 | 285 | 151 | 85 |
>TRINITY_DN109158_c1_g4_i10 from sample A3 / Example spliced isoformGTTAAAGAAAGAACAATTTTATCGGTTTTTGGTGGGGCTCCCCTGCTGGGCGTGCTGCAGCCTTTCTTGACGCTGACCGCGGATTTATCACTTCGCAACATTCCGTGTCTGTCTCCCTTCGCAGAAAGAGTCTGCAATACGGTGCGGTTTTTGAGAGCTGAGGGAAATAGATTGCGTGTTAAAATGGCAAATGATTTGGT
TTCCCGCACGGGACGCCTCCGGCAGCGCTATGATAACCAGTGCCGCCTTGTTGCAGGGTGCATTCCATACAGGTACAAGGAGCCTGCCGAGGCTTGCAGTGGTACAGCGAAGCAGGAATTGGAGGTGCTGATGATTTTTTCACGTAGTGGAAAGGCACTTCTCTTCCCGAAGGGTGGTTGGGAGAATGATGAATCAGTAC
AGGAGGCAGCATGCAGAGAAGCTTTTGAAGAAGCAGGGGTTCGAGGGATTATCAAAGAAGATTTGGGATCCTGGGAAGATGACAGGGGCCTAGAAGGTTGTCACAGAACCCATATGTTTGCATTGCTTGTTACTGAAGAACTGGATTCATGGCCTGAACAAGATGAACGTCAACGAAAATGGGTTACTATTACAGAGGCA
GATGCAGGATGTAAGCATGACTGGATGCGACAAGCTCTTCATAGTTGTGTGACTTATCTTTCCAGCATACAGGAGGCTATCTGTGCTCATCCAGTGAGACCCTTACAGACATATCGCCGCAGATCCCAGGACAGCTCACACGGCACCAACAGACAGGATACTTCCCAAGCTTGGCTGTGGGTTACAGCATCCAGCCAGAC
ATATCTCAGACCAGATCTTCCTGCTCTTCCAGATCCTCTGACCAATCATCTGATAGGAGTTTCTTCTTTATGGTCTCAGATGTTAGAGAGATAGTATCAGGGGGTGTTGAGATTTCCTAGGCATGACATCCTCCACTGGAGATTTGGTGCTTTTGGTGTTTGGTTCTCTGCAGTACTTGCACATAACTGCCGTACCGCTT
CGTTTTCCTGCTCCATTATTTGACTTTAGATCTTATTCACCATAGAATAGCTCTGATTATATCATCATTTTCTAGGAGTGGCCTTTGCACTCTCATTTTGTATCTAACACTGTTGTACTTAGCAGTCCCATTGACCTATTTGTAGTCATTTGTTGTACATTAATAAAATTAATTTCTCATTTTATAACAAATATGAAGTT
TT
>TRINITY_DN109158_c1_g4_i11 from sample A3 / Example unspliced isoform:GTTAAAGAAAGAACAATTTTATCGGTTTTTGGTGGGGCTCCCCTGCTGGGCGTGCTGCAGCCTTTCTTGACGCTGACCGCGGATTTATCACTTCGCAACATTCCGTGTCTGTCTCCCTTCGCAGAAAGAGTCTGCAATACGGTGCGgtaagaaaaattcaaattcttctcagccacttaactgcatacaaatcttcctgg
aacgttcctaacatattatatcccgtccttaaactttctgcaaattttcaacaaaaccagaccgacaaatgggaatccattattattttggtctgtgtggagttttcctctctgcccacaaagcttcgtagaacgttcctactactcggttctgcttgtcttcttctttgcaagtttagtacaaaactagaccgatccat
atgggactccattatcaatgtaatgtatattcctgtggagttgtccatgcaatgatagtgagaacgattctgttttcctctgctactggcaattcaaattctcatatcaaagtcatttacagGTTTTTGAGAGCTGAGGGAAATAGATTGCGTGTTAAAATGGCAAATGATTTGGTTTCCCGCACGGGACGCCTCCGGCA
GCGCTATGATAACCAGTGCCGCCTTGTTGCAGGGTGCATTCCATACAGGTACAAGGAGCCTGCCGAGGCTTGCAGTGGTACAGCGAAGCAGGAATTGGAGGTGCTGATGATTTTTTCACGTAGTGGAAAGGCACTTCTCTTCCCGAAGGGTGGTTGGGAGAACGATGAATCAGTACAGGAGGCAGCATGCAGAGAAGCTT
TTGAAGAAGCAGGGGTTCGAGGGATTATCAAAGAAGATTTGGGATCCTGGGAAGATGACAGGGGCCTAGAAGGTTGTCACAGAACCCATATGTTTGCATTGCTTGTTACTGAAGAACTGGATTCATGGCCTGAACAAGATGAACGTCAACGAAAATGGGTTACTATTACAGAGGCAGATGCAGGATGTAAGCATGACTGG
ATGCGACAAGCTCTTCATAGTTGTGTGACTTATCTTTCCAGCATACAGGTATTCTCATCTTCACTGCCAGAATCGGGCAAGGGTCCTGAATCTCCTAATCATTCATCTCAAATATAAGACCAAGAACAGTTGTGACTCTCATTTATCAATCCCTGGAGAAAAGGAATTTTCAAGATGGAAAATGTTGCTGCTTACGTTTC
ATTCTGCTTATGATCAGCCATTAGATCCGCTTATATTTGATTTTGTGAGACCTCAGGAGGCTATCTGTGCTCATCCAGTGAGACCCTTACAGACATATCGCCGCAGATCCCAGGACAGCTCACACGGCACCAACAGACAGGATACTTCCCAAGCTTGGCTGTGGGTTACAGCATCCAGCCAGACATATCTCAGACCAGAT
CTTCCTGCTCTTCCAGATCCTCTGACCAATCATCTGATAGGAGTTTCTTCTTTATGGTCTCAGATGTTAGAGAGATAGTATCAGGGGGTGTTGAGATTTCCTAGGCATGACATCCTCCACTGGAGATTTGGTGCTTTTGGTGTTTGGTTCTCTGCAGTACTTGCACATAACTGCCGTACCGCTTCGTTTTCCTGCTCCAT
TATTTGACTTTAGATCTTATTCACCATAGAATAGCTCTGATTATATCATCATTTTCTAGGAGTGGCCTTTGCACTCTCATTTTGTATCTAACACTGTTGTACTTAGCAGTCCCATTGACCTATTTGTAGTCATTTGTTGTACATTAATAAAATTAATTTCTCATTTTATAACAAATATGAAGTTTT