sp|O49596|HMGB2_ARATH ----> High mobility group B protein 2
Intron 1 GTGAAATCAA ... TGTTCCAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0 | 2 | 0 | 0.7 |
| A2 | 66.67 | 1 | 2 | 0 |
| A3 | 62.5 | 3 | 5 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 50 | 1 | 1 | 1.3 |
| A7 | 43.75 | 9 | 7 | 2 |
| A8 | 14.29 | 12 | 2 | 0.7 |
| A9 | 50 | 5 | 5 | 0.3 |
| A10 | 16.67 | 10 | 2 | 2.3 |
>TRINITY_DN40101_c0_g1_i1 from sample A7 / Example spliced isoformACTGTATCCGCTCTCGTTTCTTCGTCACTTAATTTCCTCTCACCAAAGCTTTCATCCATGGCGGCAACAGTGGACACCAGGAGTCCTGTACCAACGTTTCGGCGCACTCCAGTTGTCAAGGATTCGCCTATCTGCCTTAAGGTTTATCGAGATGCTCTACACTCTGAGAAAAAGAGCTTCCAAAGCGACTGCGTGCGAAA
TAATGCATCAAAGATCACAAAGCTCGGATCTCAAACAGACAAGACATCAGAGAACCCAAACGAGAAAAGGAAAGTAACAGCGAAAAGATTGCCATCAAAGAAAGAAGGTAAAGATGCTGGAAAGAAAAGAGCCAAGAAGTCCGAGACCACGGACATGCCGAAACGCCCTGCCACATCTTTCATACTCTTCATGTCGAGCT
TCAAAGAGGAATTGAAAAAACAAAATCCCGCTATCAAGACTGCCGTCACGCTGTCCAAGTCTGCCGGAACAAAGTGGAAATCAATGTCTGAGGAAGAGAAACTTCCCTACATCAAGCTAGCTGCAGAAGAAAAAGCAGCCTACCAGACAAAGCTCGAGTCATACAAGAGCAAACAGTCTACCGAGGATAAAGAAAAACAT
GCTGCTTGTAGTGGAAGTGATTCATCGGTTCTTCAGTCGACTGACCTGAACATACTGGAAGTTGTGGGAGATAACATGATTGATTTCAGTATCAACTCTACTCCGAACATCATTTAAGTCCAAAAGTCTGGGCAATCAATGGTAGTTACATGAAATTGCGGTGCAATATTCAGCTGTAATATTTGTTCTGCGAAGTGAAA
TCCAATGTACATAGCCAATGTTAATCGCGTTCAGTCGTTTTACATACTGGTTACGGCTGCGTTCTGTCTATATGCCCATACAAAATATAATACTTGGATTCCCC
>TRINITY_DN40101_c0_g1_i2 from sample A7 / Example unspliced isoform:ACTGTATCCGCTCTCGTTTCTTCGTCACTTAATTTCCTCTCACCAAAGCTTTCATCCATGGCGGCAACAGTGGACACCAGGAGTCCTGTACCAACGTTTCGGCGCACTCCAGTTGTCAAGGATTCGCCTATCTGCCTTAAGGTTTATCGAGATGCTCTACACTCTGAGAAAAAGAGCTTCCAAAGCGACTGCGTGCGAAA
TAATGgtgaaatcaagcacttctttccaatgcattagttcacattagtaattgcttcgaggttaattctttattttgctcaagagaagaaaacgttaaattgatcgaagattattttaaagaacagaaaataggagaagcttgcgatcatattcctggttttattgttgatttactttggacatctaattctttgtgtat
tttgattattttgttccaaagCATCAAAGATCACAAAGCTCGGATCTCAAACAGACAAGACATCAGAGAACCCAAACGAGAAAAGGAAAGTAACAGCGAAAAGATTGCCATCAAAGAAAGAAGGTAAAGATGCTGGAAAGAAAAGAGCCAAGAAGTCCGAGACCACGGACATGCCGAAACGCCCTGCCACATCTTTCATA
CTCTTCATGTCGAGCTTCAAAGAGGAATTGAAAAAACAAAATCCCGCTATCAAGACTGCCGTCACGGTGACTACTTGTTGATTTCCATTCGGTTCAATTTTAAGTTTTCTGATTGAGGCCTAGAGCCTGCAAATTTTCATGAATTTGTTAACACAGATTGCTCTTTACTTTGCTGCATTAAGCTGTCCAAGTCTGCCGGA
ACAAAGTGGAAATCAATGTCTGAGGAAGTAAGATCCTTCCAACTACAGAGCAGCTTTGCTAATCAATATTTCCATATCTTTATAAGCATTAATAAGTTTAATTTTTTGCTCACGTGTCACAAATCTGGGGCTTGGTCAGGAGAAACTTCCCTACATCAAGCTAGCTGCAGAAGAAAAAGCAGCCTACCAGACAAAGCTCG
AGTCATACAAGAGCAAACAGTCTACCGAGGATAAAGAAAAACATGCTGCTTGTAGTGGAAGTGATTCATCGGTTCTTCAGTCGACTGACCTGAACATACTGGAAGTTGTGGGAGATAACATGATTGATTTCAGTATCAACTCTACTCCGAACATCATTTAAGTCCAAAAGTCTGGGCAATCAATGGTAGTTACATGAAAT
TGCGGTGCAATATTCAGCTGTAATATTTGTTCTGCGAAGTGAAATCCAATGTACATAGCCAATGTTAATCGCGTTCAGTCGTTTTACATACTGGTTACGGCTGCGTTCTGTCTATATGCCCATACAAAATATAATACTTGGATTCCCC
Intron 2 GTAAGATCCT ... GCTTGGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60 | 1 | 2 | 1 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | 32.14 | 4.3 | 0 | 4 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | 0 | 2 | 0 | 0 |
| A6 | 0 | 2 | 0 | 0 |
| A7 | 26.09 | 17 | 4 | 8 |
| A8 | 39.13 | 7 | 4 | 5 |
| A9 | 22.58 | 12 | 0 | 7 |
| A10 | 21.25 | 16.8 | 3 | 6 |
>TRINITY_DN40101_c0_g1_i1 from sample A7 / Example spliced isoformACTGTATCCGCTCTCGTTTCTTCGTCACTTAATTTCCTCTCACCAAAGCTTTCATCCATGGCGGCAACAGTGGACACCAGGAGTCCTGTACCAACGTTTCGGCGCACTCCAGTTGTCAAGGATTCGCCTATCTGCCTTAAGGTTTATCGAGATGCTCTACACTCTGAGAAAAAGAGCTTCCAAAGCGACTGCGTGCGAAA
TAATGCATCAAAGATCACAAAGCTCGGATCTCAAACAGACAAGACATCAGAGAACCCAAACGAGAAAAGGAAAGTAACAGCGAAAAGATTGCCATCAAAGAAAGAAGGTAAAGATGCTGGAAAGAAAAGAGCCAAGAAGTCCGAGACCACGGACATGCCGAAACGCCCTGCCACATCTTTCATACTCTTCATGTCGAGCT
TCAAAGAGGAATTGAAAAAACAAAATCCCGCTATCAAGACTGCCGTCACGCTGTCCAAGTCTGCCGGAACAAAGTGGAAATCAATGTCTGAGGAAGAGAAACTTCCCTACATCAAGCTAGCTGCAGAAGAAAAAGCAGCCTACCAGACAAAGCTCGAGTCATACAAGAGCAAACAGTCTACCGAGGATAAAGAAAAACAT
GCTGCTTGTAGTGGAAGTGATTCATCGGTTCTTCAGTCGACTGACCTGAACATACTGGAAGTTGTGGGAGATAACATGATTGATTTCAGTATCAACTCTACTCCGAACATCATTTAAGTCCAAAAGTCTGGGCAATCAATGGTAGTTACATGAAATTGCGGTGCAATATTCAGCTGTAATATTTGTTCTGCGAAGTGAAA
TCCAATGTACATAGCCAATGTTAATCGCGTTCAGTCGTTTTACATACTGGTTACGGCTGCGTTCTGTCTATATGCCCATACAAAATATAATACTTGGATTCCCC
>TRINITY_DN40101_c0_g1_i2 from sample A7 / Example unspliced isoform:ACTGTATCCGCTCTCGTTTCTTCGTCACTTAATTTCCTCTCACCAAAGCTTTCATCCATGGCGGCAACAGTGGACACCAGGAGTCCTGTACCAACGTTTCGGCGCACTCCAGTTGTCAAGGATTCGCCTATCTGCCTTAAGGTTTATCGAGATGCTCTACACTCTGAGAAAAAGAGCTTCCAAAGCGACTGCGTGCGAAA
TAATGGTGAAATCAAGCACTTCTTTCCAATGCATTAGTTCACATTAGTAATTGCTTCGAGGTTAATTCTTTATTTTGCTCAAGAGAAGAAAACGTTAAATTGATCGAAGATTATTTTAAAGAACAGAAAATAGGAGAAGCTTGCGATCATATTCCTGGTTTTATTGTTGATTTACTTTGGACATCTAATTCTTTGTGTAT
TTTGATTATTTTGTTCCAAAGCATCAAAGATCACAAAGCTCGGATCTCAAACAGACAAGACATCAGAGAACCCAAACGAGAAAAGGAAAGTAACAGCGAAAAGATTGCCATCAAAGAAAGAAGGTAAAGATGCTGGAAAGAAAAGAGCCAAGAAGTCCGAGACCACGGACATGCCGAAACGCCCTGCCACATCTTTCATA
CTCTTCATGTCGAGCTTCAAAGAGGAATTGAAAAAACAAAATCCCGCTATCAAGACTGCCGTCACGGTGACTACTTGTTGATTTCCATTCGGTTCAATTTTAAGTTTTCTGATTGAGGCCTAGAGCCTGCAAATTTTCATGAATTTGTTAACACAGATTGCTCTTTACTTTGCTGCATTAAGCTGTCCAAGTCTGCCGGA
ACAAAGTGGAAATCAATGTCTGAGGAAgtaagatccttccaactacagagcagctttgctaatcaatatttccatatctttataagcattaataagtttaattttttgctcacgtgtcacaaatctggggcttggtcagGAGAAACTTCCCTACATCAAGCTAGCTGCAGAAGAAAAAGCAGCCTACCAGACAAAGCTCG
AGTCATACAAGAGCAAACAGTCTACCGAGGATAAAGAAAAACATGCTGCTTGTAGTGGAAGTGATTCATCGGTTCTTCAGTCGACTGACCTGAACATACTGGAAGTTGTGGGAGATAACATGATTGATTTCAGTATCAACTCTACTCCGAACATCATTTAAGTCCAAAAGTCTGGGCAATCAATGGTAGTTACATGAAAT
TGCGGTGCAATATTCAGCTGTAATATTTGTTCTGCGAAGTGAAATCCAATGTACATAGCCAATGTTAATCGCGTTCAGTCGTTTTACATACTGGTTACGGCTGCGTTCTGTCTATATGCCCATACAAAATATAATACTTGGATTCCCC
Intron 3 GTGACTAATT ... TGCAATTAAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 2 | 2 | 0 |
| A2 | 0 | 2 | 0 | 0 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | 100 | 0 | 4 | 0 |
| A5 | 20 | 2 | 1 | 0 |
| A6 | 0 | 2 | 0 | 0 |
| A7 | 11.11 | 8 | 2 | 0 |
| A8 | 42.86 | 4 | 3 | 3 |
| A9 | 25 | 9 | 3 | 3 |
| A10 | 0 | 7 | 0 | 0 |
>TRINITY_DN39651_c0_g1_i4 from sample A8 / Example spliced isoformTTGCTTCAACAGCCAGAAAGAGAAAAACAAAGTAACAGTGAAAAGATTGCCATTAAAGAAAGAAGATAAAGATGCCGGGAACAAAAGATCCAAGAAGTCCAAGAACAAAGACATGCCGAAACGCCCTGCCACTGCTTTCATACTCTTCATGTCGAGCGTCAAGGAGGAATTGAAAAAACAAAACCCCGATATCAAAACTG
CCGTGATGCTGTCGAAGTCCGCGGGAACAAAGTGGAAATCAATGGCTGCGGAAGACAAACTTCCCTACATCAAGCTGGCTGGAGAGGAAAAGGCAGTCTACCAGAGAAAACTCGAGTCATACAGAAGCATGCAGTCTGCCGAGGATAACGAAAACCATGCTGCTTGTGATGGAAGCGATTCATCGATTCTTCAGTCAACT
GACCTGAACATACTGGAAGACGTCGGGGATAACGGGATTGATATGCAGTGAATTTCAGCATCATTCCTGCTCTGAACATCATTGAATTCCAAAAGTCCCGGCATGCAATGGGAGATCCATCAAAATTGCTACTATATCTGTGCCGGGAATTGAATTCCATTGTACATAATTCAACGTTAAGCGCTTTTAGTTGTTTTACG
TACTGGTTACGCTCTGTCTCCTGTGGTGCATCCGTCCGTACAAAATACAACTCGGTTTTTCTATGAATAAAATGTTATTGTTCTTGACTCC
>TRINITY_DN39651_c0_g1_i10 from sample A8 / Example unspliced isoform:TTGCTTCAACAGCCAGAAAGAGAAAAACAAAGTAACAGTGAAAAGATTGCCATTAAAGAAAGAAGATAAAGATGCCGGGAACAAAAGATCCAAGAAGTCCAAGAACAAAGACATGCCGAAACGCCCTGCCACTGCTTTCATACTCTTCATGTCGAGCGTCAAGGAGGAATTGAAAAAACAAAACCCCGATATCAAAACTG
CCGTGATGgtgactaattaatgatttccgttccgttcatttttaaagattgtgaatgagacctagatcccgtaaatttgcatacaattgttaacctaaatggctctttactttgctgcaattaagCTGTCGAAGTCCGCGGGAACAAAGTGGAAATCAATGGCTGCGGAAGTATGATCCTTTCAATTGCAGAGCTTCTTT
GCTAATATCAATATTTTCACATCTTGATAAGCATAAATAAGTTTAATTTTGTGGTCACGTGTTACAAAATTGGGGCTTCGGTCAGGACAAACTTCCCTACATCAAGCTGGCTGGAGAGGAAAAGGCAGTCTACCAGAGAAAACTCGAGTCATACAGAAGCATGCAGTCTGCCGAGGATAACGAAAACCATGCTGCTTGTG
ATGGAAGCGATTCATCGATTCTTCAGTCAACTGACCTGAACATACTGGAAGACGTCGGGGATAACGGGATTGATATGCAGTGAATTTCAGCATCATTCCTGCTCTGAACATCATTGAATTCCAAAAGTCCCGGCATGCAATGGGAGATCCATCAAAATTGCTACTATATCTGTGCCGGGAATTGAATTCCATTGTACATA
ATTCAACGTTAAGCGCTTTTAGTTGTTTTACGTACTGGTTACGCTCTGTCTCCTGTGGTGCATCCGTCCGTACAAAATACAACTCGGTTTTTCTATGAATAAAATGTTATTGTTCTTGACTCC
Intron 4 GTGACTACTT ... CTGCATTAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 48.57 | 2 | 2.1 | 1.6 |
| A2 | 25.39 | 5 | 2.3 | 0 |
| A3 | 28.57 | 4 | 2.3 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | 28.57 | 2 | 1.1 | 0 |
| A6 | 14.29 | 3 | 0.6 | 0 |
| A7 | 12.7 | 14 | 2.3 | 3.1 |
| A8 | 23.76 | 13 | 4.3 | 4.6 |
| A9 | 20.17 | 11 | 3.4 | 0.6 |
| A10 | 17.41 | 21.3 | 4.9 | 2.6 |
>TRINITY_DN40101_c0_g1_i1 from sample A7 / Example spliced isoformACTGTATCCGCTCTCGTTTCTTCGTCACTTAATTTCCTCTCACCAAAGCTTTCATCCATGGCGGCAACAGTGGACACCAGGAGTCCTGTACCAACGTTTCGGCGCACTCCAGTTGTCAAGGATTCGCCTATCTGCCTTAAGGTTTATCGAGATGCTCTACACTCTGAGAAAAAGAGCTTCCAAAGCGACTGCGTGCGAAA
TAATGCATCAAAGATCACAAAGCTCGGATCTCAAACAGACAAGACATCAGAGAACCCAAACGAGAAAAGGAAAGTAACAGCGAAAAGATTGCCATCAAAGAAAGAAGGTAAAGATGCTGGAAAGAAAAGAGCCAAGAAGTCCGAGACCACGGACATGCCGAAACGCCCTGCCACATCTTTCATACTCTTCATGTCGAGCT
TCAAAGAGGAATTGAAAAAACAAAATCCCGCTATCAAGACTGCCGTCACGCTGTCCAAGTCTGCCGGAACAAAGTGGAAATCAATGTCTGAGGAAGAGAAACTTCCCTACATCAAGCTAGCTGCAGAAGAAAAAGCAGCCTACCAGACAAAGCTCGAGTCATACAAGAGCAAACAGTCTACCGAGGATAAAGAAAAACAT
GCTGCTTGTAGTGGAAGTGATTCATCGGTTCTTCAGTCGACTGACCTGAACATACTGGAAGTTGTGGGAGATAACATGATTGATTTCAGTATCAACTCTACTCCGAACATCATTTAAGTCCAAAAGTCTGGGCAATCAATGGTAGTTACATGAAATTGCGGTGCAATATTCAGCTGTAATATTTGTTCTGCGAAGTGAAA
TCCAATGTACATAGCCAATGTTAATCGCGTTCAGTCGTTTTACATACTGGTTACGGCTGCGTTCTGTCTATATGCCCATACAAAATATAATACTTGGATTCCCC
>TRINITY_DN40101_c0_g1_i2 from sample A7 / Example unspliced isoform:ACTGTATCCGCTCTCGTTTCTTCGTCACTTAATTTCCTCTCACCAAAGCTTTCATCCATGGCGGCAACAGTGGACACCAGGAGTCCTGTACCAACGTTTCGGCGCACTCCAGTTGTCAAGGATTCGCCTATCTGCCTTAAGGTTTATCGAGATGCTCTACACTCTGAGAAAAAGAGCTTCCAAAGCGACTGCGTGCGAAA
TAATGGTGAAATCAAGCACTTCTTTCCAATGCATTAGTTCACATTAGTAATTGCTTCGAGGTTAATTCTTTATTTTGCTCAAGAGAAGAAAACGTTAAATTGATCGAAGATTATTTTAAAGAACAGAAAATAGGAGAAGCTTGCGATCATATTCCTGGTTTTATTGTTGATTTACTTTGGACATCTAATTCTTTGTGTAT
TTTGATTATTTTGTTCCAAAGCATCAAAGATCACAAAGCTCGGATCTCAAACAGACAAGACATCAGAGAACCCAAACGAGAAAAGGAAAGTAACAGCGAAAAGATTGCCATCAAAGAAAGAAGGTAAAGATGCTGGAAAGAAAAGAGCCAAGAAGTCCGAGACCACGGACATGCCGAAACGCCCTGCCACATCTTTCATA
CTCTTCATGTCGAGCTTCAAAGAGGAATTGAAAAAACAAAATCCCGCTATCAAGACTGCCGTCACGgtgactacttgttgatttccattcggttcaattttaagttttctgattgaggcctagagcctgcaaattttcatgaatttgttaacacagattgctctttactttgctgcattaagCTGTCCAAGTCTGCCGGA
ACAAAGTGGAAATCAATGTCTGAGGAAGTAAGATCCTTCCAACTACAGAGCAGCTTTGCTAATCAATATTTCCATATCTTTATAAGCATTAATAAGTTTAATTTTTTGCTCACGTGTCACAAATCTGGGGCTTGGTCAGGAGAAACTTCCCTACATCAAGCTAGCTGCAGAAGAAAAAGCAGCCTACCAGACAAAGCTCG
AGTCATACAAGAGCAAACAGTCTACCGAGGATAAAGAAAAACATGCTGCTTGTAGTGGAAGTGATTCATCGGTTCTTCAGTCGACTGACCTGAACATACTGGAAGTTGTGGGAGATAACATGATTGATTTCAGTATCAACTCTACTCCGAACATCATTTAAGTCCAAAAGTCTGGGCAATCAATGGTAGTTACATGAAAT
TGCGGTGCAATATTCAGCTGTAATATTTGTTCTGCGAAGTGAAATCCAATGTACATAGCCAATGTTAATCGCGTTCAGTCGTTTTACATACTGGTTACGGCTGCGTTCTGTCTATATGCCCATACAAAATATAATACTTGGATTCCCC
Intron 5 GTATGATCCT ... CTTCGGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 0 |
| A2 | 0 | 1 | 0 | 0 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | 50 | 2 | 0 | 2 |
| A5 | 0 | 1 | 0 | 0 |
| A6 | 0 | 2 | 0 | 0 |
| A7 | 36.36 | 7 | 3 | 4 |
| A8 | 54.55 | 10 | 3 | 12 |
| A9 | 43.75 | 18 | 2 | 14 |
| A10 | 39.13 | 14 | 1 | 9 |
>TRINITY_DN39651_c0_g1_i4 from sample A8 / Example spliced isoformTTGCTTCAACAGCCAGAAAGAGAAAAACAAAGTAACAGTGAAAAGATTGCCATTAAAGAAAGAAGATAAAGATGCCGGGAACAAAAGATCCAAGAAGTCCAAGAACAAAGACATGCCGAAACGCCCTGCCACTGCTTTCATACTCTTCATGTCGAGCGTCAAGGAGGAATTGAAAAAACAAAACCCCGATATCAAAACTG
CCGTGATGCTGTCGAAGTCCGCGGGAACAAAGTGGAAATCAATGGCTGCGGAAGACAAACTTCCCTACATCAAGCTGGCTGGAGAGGAAAAGGCAGTCTACCAGAGAAAACTCGAGTCATACAGAAGCATGCAGTCTGCCGAGGATAACGAAAACCATGCTGCTTGTGATGGAAGCGATTCATCGATTCTTCAGTCAACT
GACCTGAACATACTGGAAGACGTCGGGGATAACGGGATTGATATGCAGTGAATTTCAGCATCATTCCTGCTCTGAACATCATTGAATTCCAAAAGTCCCGGCATGCAATGGGAGATCCATCAAAATTGCTACTATATCTGTGCCGGGAATTGAATTCCATTGTACATAATTCAACGTTAAGCGCTTTTAGTTGTTTTACG
TACTGGTTACGCTCTGTCTCCTGTGGTGCATCCGTCCGTACAAAATACAACTCGGTTTTTCTATGAATAAAATGTTATTGTTCTTGACTCC
>TRINITY_DN39651_c0_g1_i10 from sample A8 / Example unspliced isoform:TTGCTTCAACAGCCAGAAAGAGAAAAACAAAGTAACAGTGAAAAGATTGCCATTAAAGAAAGAAGATAAAGATGCCGGGAACAAAAGATCCAAGAAGTCCAAGAACAAAGACATGCCGAAACGCCCTGCCACTGCTTTCATACTCTTCATGTCGAGCGTCAAGGAGGAATTGAAAAAACAAAACCCCGATATCAAAACTG
CCGTGATGGTGACTAATTAATGATTTCCGTTCCGTTCATTTTTAAAGATTGTGAATGAGACCTAGATCCCGTAAATTTGCATACAATTGTTAACCTAAATGGCTCTTTACTTTGCTGCAATTAAGCTGTCGAAGTCCGCGGGAACAAAGTGGAAATCAATGGCTGCGGAAgtatgatcctttcaattgcagagcttcttt
gctaatatcaatattttcacatcttgataagcataaataagtttaattttgtggtcacgtgttacaaaattggggcttcggtcagGACAAACTTCCCTACATCAAGCTGGCTGGAGAGGAAAAGGCAGTCTACCAGAGAAAACTCGAGTCATACAGAAGCATGCAGTCTGCCGAGGATAACGAAAACCATGCTGCTTGTG
ATGGAAGCGATTCATCGATTCTTCAGTCAACTGACCTGAACATACTGGAAGACGTCGGGGATAACGGGATTGATATGCAGTGAATTTCAGCATCATTCCTGCTCTGAACATCATTGAATTCCAAAAGTCCCGGCATGCAATGGGAGATCCATCAAAATTGCTACTATATCTGTGCCGGGAATTGAATTCCATTGTACATA
ATTCAACGTTAAGCGCTTTTAGTTGTTTTACGTACTGGTTACGCTCTGTCTCCTGTGGTGCATCCGTCCGTACAAAATACAACTCGGTTTTTCTATGAATAAAATGTTATTGTTCTTGACTCC
Intron 6 GTACGTTAAA ... GCTTCAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 2 | 0 | 2 |
| A2 | 0 | 1 | 0 | 0 |
| A3 | 42.86 | 2 | 0 | 3 |
| A4 | 0 | 2 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 42.86 | 4 | 2 | 4 |
| A7 | 21.74 | 9 | 2 | 3 |
| A8 | 28.57 | 10 | 3 | 5 |
| A9 | 0 | 6 | 0 | 0 |
| A10 | 13.04 | 10 | 2 | 1 |
>TRINITY_DN39651_c0_g1_i11 from sample A8 / Example spliced isoformATCCGCTCTCGTTTCTTCGTCACTTAATTTCCTCTCACCAAAGCTTTCATCCATGGCGGCAACAGTGGACACCAGGAGTCCTGTACCAACGTTTCGGCGCACTCCAGTTGTCAAGGATTCGCCTATCTGCCTTAAGGTTTATCGAGATGCTCTACACTCTGAGAAAAAGAGCTTCCAAAGCGACTGCGTGCGAAATAATG
CATCAAAGATCACAAAGCTCGGATCTCAAACAGACAAGACATCAGAGAACCCAAACGAGAAAAGGAAAGTAACAGCGAAAAGATTGCCATCAAAGAAAGAAGGTAAAGATGCTGGAAAGAAAAGAGCCAAGAAGTCCGAGACCACGGACATGCCGAAACGCCCTGCCACATCTTTCATACTCTTCATGTCGAACTTCAAA
GAGGAATTGAAAAAACAAAATCCCGCTATCAAGACTGCCGTCACGCTGTCCAAGTCTGCCGGAACAAAGTGGAAATCAATGTCTGAGGAAGAGAAACTTCCCTACATCAAGCTAGCTGCAGAAGAAAAAGCAGCCTACCAGACAAAGCTCGAGTCATACAAGAGCAAACAGTCTACCGAGGATAAAGAAAAACATGCTGC
TTGTAGTGGAAGTGATTCATCGGTTCTTCAGTCGACTGACCTGAACATACTGGAAGTTGTGGGAGATAACATGATTGATTTCAGTATCAACTCTACTCCGAACATCATTTAAGTCCAAAAGTCTGGGCAATCAATGGTAGTTACATGAAATTGCGGTGCAATATTCAGCTGTAATATTTGTTCTGCGAAGTGAAATCCAA
TGTACATAGCCAATGTTAATCGCGTTCAGTCGTTTTACATACTGGTTACGGCTGCGTTCTGTCTATATGCCCATACAAAATATAATACTTGGATTCCCTATG
>TRINITY_DN39651_c0_g1_i5 from sample A8 / Example unspliced isoform:ATCCGCTCTCGTTTCTTCGTCACTTAATTTCCTCTCACCAAAGCTTTCATCCATGGCGGCAACAGTGGACACCAGGAGTCCTGTACCAACGTTTCGGCGCACTCCAGTTGTCAAGGATTCGCCTATCTGCCTTAAGGTTTATCGAGATGCTCTACACTCTGAGAAAAAGAGCTTCCAAAGCGACTGCGTGCGAAATAATG
GTGAAATCAAGCACTTCTTTCCAATGCATTAGTTCACATTAGTAATTGCTTCGAGGTTAATTCTTTATTTTGCTCAAGAGAAGAAAACGTTAAATTGATCGAAGATTATTTTAAAGAACAGAAAATAGGAGAAGCTTGCGATCATATTCCTGGTTTTATTGTTGATTTACTTTGGACATCTAATTCTTTGTGTATTTTGA
TTATTTTGTTCCAAAGCATCAAAGATCACAAAGCTCGGATCTCAAACAGACAAGACATCAGAGAAgtacgttaaatagccctgctttactaggaatctgagccttacaaaataattactgataaaactattgcttcaacagCCCAAACGAGAAAAGGAAAGTAACAGCGAAAAGATTGCCATCAAAGAAAGAAGGTAAAG
ATGCTGGAAAGAAAAGAGCCAAGAAGTCCGAGACCACGGACATGCCGAAACGCCCTGCCACATCTTTCATACTCTTCATGTCGAACTTCAAAGAGGAATTGAAAAAACAAAATCCCGCTATCAAGACTGCCGTCACGCTGTCCAAGTCTGCCGGAACAAAGTGGAAATCAATGTCTGAGGAAGAGAAACTTCCCTACATC
AAGCTAGCTGCAGAAGAAAAAGCAGCCTACCAGACAAAGCTCGAGTCATACAAGAGCAAACAGTCTACCGAGGATAAAGAAAAACATGCTGCTTGTAGTGGAAGTGATTCATCGGTTCTTCAGTCGACTGACCTGAACATACTGGAAGTTGTGGGAGATAACATGATTGATTTCAGTATCAACTCTACTCCGAACATCAT
TTAAGTCCAAAAGTCTGGGCAATCAATGGTAGTTACATGAAATTGCGGTGCAATATTCAGCTGTAATATTTGTTCTGCGAAGTGAAATCCAATGTACATAGCCAATGTTAATCGCGTTCAGTCGTTTTACATACTGGTTACGGCTGCGTTCTGTCTATATGCCCATACAAAATATAATACTTGGATTCCCTATG