sp|F4JNX3|CMKMT_ARATH ----> Calmodulin-lysine N-methyltransferase

Intron 1 GTGATGCAAG ... CTTTTTACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	-1	0	0	0
A2	57.14	6	8	0
A3	62.5	3	5	0
A4	66.67	1	2	0
A5	-1	0	0	0
A6	66.67	3	6	0
A7	61.9	8	13	2
A8	63.64	4	7	0
A9	45.45	6	5	0
A10	55.56	4	5	0

>TRINITY_DN46498_c1_g4_i2 from sample A7 / Example spliced isoform

GACGGACTGCAGGAGGGTACAGAGTTATAGAGGACACTTGTTCTACAATTACAGAACAAAACACGGCGCGGGCAGAAGGAATCGCTACATGAGTTCAGCAGAGAAGAAAGATGATGTTGCTTCTCAATCAAGTCCAAAGGGGGAAGCGGAGATGAAAACAACATCAGAGCATCAATTCGGAGAGAAAGATGACCCCAATG
GATTCTCTGTTACAGTCAGCGAGCTTGGAGCAGGAACTGCATTGCCAGGAATTGTAGCTGCCAAATTGGGTGCTGATGTTACTCTAACAGATAATTGCAAGAGGCCTCAGGTATTGGAAAACATGAAGAGAACATGTGACCTGAATGGGGTTAATTGCAAGATTATGGGTCTAACATGGGGGGAATGGGATTCAACGTCT
TTTGATTTGCGTCCTCAAATAGTTTTGGGTGCTGACGTCCTCTATGAAAGTAGAGACTTTGATGATCTCCTTGCAACTGTGAGTTTTCTTCTGCAAAATGCTCCTAATACGATTTTCATTACTTCCTATGAGAGACGTAGTGGCCACCGATTGCTTGAATATTTGATGATGAAATGGAACCTGAAATGTGTGAAGCTTTT
GGATGCATATGAGCTCATCCCTTCTTGTAAGGCATCTATGATCTCTGCCTCTATTGAATTAGCAGAAATCAAGATAAAATGCTAAGTTATCAGTAAAGCTCTTATAATTACAAGCAGTGATGCCTGTTTGAAATCTATTTTTTTTCATTTGAGTTGGTGTCCAGTGAAATTATATCGGTTCAATGTACTGTATGATATTA
TCACAAAGGTTTCTATTTTATGAGTCAGATGTTAAGGCATCATTATTTTTGAGTTGTATTAGGCAGTTGAATTATTATTAAAAAAATTAGTTTGCAATGCAGGGCCTCATGGCTATATGCTATTGTTACTTCAGTTATATTCAACTGTTGATTAGTTATGGCGAGACTATTAATTCACATTAATTGAGCAT

>TRINITY_DN46498_c1_g4_i4 from sample A7 / Example unspliced isoform:

GACGGACTGCAGGAGGGTACAGAGTTATAGAGGACACTTGTTCTACAATTACAGAACAAAACACGGCGCGGGCAGAAGGAATCGCTACATGAGTTCAGCAGAGAAGAAAGATGATGTTGCTTCTCAATCAAGTCCAAAGGGGGAAGCGGAGATGAAAACAACATCAGAGCATCAATTCGGAGAGAAAGATGACCCCAATG
GATTCTCTGTTACAGTCAGCGAGgtgatgcaagaagattatggactatttgtatggccttgtagcattgttttggctgagtatgtgtggcaacagaaagctcgatttcttggttctaatgtggtagagttgttttgctactttttacagCTTGGAGCAGGAACTGCATTG

Intron 2 GTGATGCAAG ... TGTGGTAGAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	100	0	0	4
A2	47.83	6	8	3
A3	57.14	3	5	3
A4	66.67	1	2	2
A5	-1	0	0	0
A6	75	3	10	8
A7	62.79	8	13	14
A8	52.94	4	7	2
A9	55.56	6	6	9
A10	46.67	4	5	2

>TRINITY_DN38126_c0_g1_i3 from sample A6 / Example spliced isoform

CACGGCGCGGGCAGAAGGAATCGCTACATGAGTTCAGCAGAGAAGAAAGATGATGTTGCTTCTCAATCAAGTCCAAAGGGGGAAGCGGAGATGATAACAACATCAGAGCATCAATTCGGAGAGAAAGATGACCCCAATGGATTCTCTGTTACAGTCAGCGAGCTTGGAGCAGGAACTGCATTGCCAGGAATTGTAGCTGC
CAAATTGGGTGCTGATGTTACTCTAACAGATAATTGCAAGAGGCCTCAGGTATTGGAAAACATGAAGAGAACATGTGACCTGAATGGGGTTAATTGCAAGATTATGGGTCTAACATGGGGGGAATGGGATTCAACGTCTTTTGATTTGCATCCTCAAATAGTTTTGGGTGCTGACGTCCTCTATGAAAGTAGAGACTTTG
ATGATCTCCTTGCAACTGTGAGTTTTCTTCTGCAAAATGCTCCTAATACGATTTTCATTACTTCCTATGAGAGACGTAGTGGCCACCGATTGCTTGAATATTTGATGATGAAATGGAACCTGAAATGTGTGAAGCTTTTGGATGCATATGAGCTCATCCCTTCTTGTAAGGCATCTATGATCTCTGCCTCTATTGAATTA
GCAGAAATCAAGATAAAATGCTAAGTTATCAGTAAAGCTCTTATAATTACAAGCAGTGATGCCTGTTTGAAATCTATTTTTTTTCATTTGAGTTGGTGTCCAGTGAAATTATATCGGTTCAATGTACTGTATGATATTATCACAAAGGTTTCTATTTTATGAGTCAGATGTTAAGGCATCATTATTTTTGAGTTGTATTA
GGCAGTTGAATTATTATTAAAAAAATTAGTTTGCAATGCAGGGCCT

>TRINITY_DN38126_c0_g1_i1 from sample A6 / Example unspliced isoform:

CACGGCGCGGGCAGAAGGAATCGCTACATGAGTTCAGCAGAGAAGAAAGATGATGTTGCTTCTCAATCAAGTCCAAAGGGGGAAGCGGAGATGATAACAACATCAGAGCATCAATTCGGAGAGAAAGATGACCCCAATGGATTCTCTGTTACAGTCAGCGAGgtgatgcaagaagattatggactatttgtatggccttg
tagcattgttttggctgagtatgtgtggcaacagaaagctcgatttcttggttctaatgtggtagagCTTGGAGCAGGAACTGCATTGCCAGGAATTGTAGCTGCCAAATTGGGTGCTGATGTTACTCTAACAGATAATTGCAAGAGGCCTCAGGTATTGGAAAACATGAAGAGAACATGTGACCTGAATGGGGTTAATT
GCAAGATTATGGGTCTAACATGGGGGGAATGGGATTCAACGTCTTTTGATTTGCATCCTCAAATAGTTTTGGGTGCTGACGTCCTCTATGAAAGTAGAGACTTTGATGATCTCCTTGCAACTGTGAGTTTTCTTCTGCAAAATGCTCCTAATACGATTTTCATTACTTCCTATGAGAGACGTAGTGGCCACCGATTGCTT
GAATATTTGATGATGAAATGGAACCTGAAATGTGTGAAGCTTTTGGATGCATATGAGCTCATCCCTTCTTGTAAGGCATCTATGATCTCTGCCTCTATTGAATTAGCAGAAATCAAGATAAAATGCTAAGTTATCAGTAAAGCTCTTATAATTACAAGCAGTGATGCCTGTTTGAAATCTATTTTTTTTCATTTGAGTTG
GTGTCCAGTGAAATTATATCGGTTCAATGTACTGTATGATATTATCACAAAGGTTTCTATTTTATGAGTCAGATGTTAAGGCATCATTATTTTTGAGTTGTATTAGGCAGTTGAATTATTATTAAAAAAATTAGTTTGCAATGCAGGGCCT