sp|Q9SD76|PHS2_ARATH ----> Alpha-glucan phosphorylase 2, cytosolic
Intron 1 GTAGCATTAC ... ACATTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 73.06 | 29.4 | 72 | 87 |
| A2 | 75.16 | 18.6 | 49 | 61 |
| A3 | 76.25 | 16.4 | 57 | 47 |
| A4 | 74.75 | 13.4 | 36 | 43 |
| A5 | 68.42 | 6 | 8 | 18 |
| A6 | 74.44 | 7.6 | 20 | 24 |
| A7 | 86.78 | 10 | 72 | 53 |
| A8 | 64.18 | 13.8 | 22 | 27 |
| A9 | 82.88 | 7.4 | 27 | 44 |
| A10 | 73.41 | 13.2 | 38 | 34 |
>TRINITY_DN123103_c1_g1_i11 from sample A2 / Example spliced isoformGTAAATTTTACGCGTGGCAACGAAGAAATGCCGAAATTGGTATTGGTATCGAAATATAATTAAAGAAAAAAAAAATCCAACTTCCATCGTAATATGTAAATTGCCATGAGCATATTCGAATTCCAAAAGTAGAGTTCTGAGTAGAAGAGTGTTTCTTATTTGGCTCTCGGCTTTGCACAGAATGTTGAGTTCAGCGAAGG
CCAGCGCGCTCAAGCCCCCTCCTAGTTTTCACAGCTCCATATTCAGAGTAGAGGGCTCGCAACCTCTTGCTCACTTGGCGGCCTTCAAAGGCTTGTTCTTCAACCCTTCCAACTATGGCGGATCCACGAGATTATCAGTATCATGCAGCACTCTCAAGAACATATTTGGCGGAGCCGGTGGCTCCAAACCGGCAAAGACG
GAGAAGAAACCCCGTAAAGCCTCTCTTCCACTGCCTGCAACCGTAACCATCGACAACGAATCTTCGGGCGAAAACACGATCCTCATTATCACGGCAGAGAACAGAACGGCTATGCTTCAGATAATCACCAGGGTTCTCAGAGCCATGGGGGTTCAAATTTCGAAGGCGAATGTAAATTTGGACAAAGGGTCCCTTGTCGA
GAAAGTTTTCGTGACCGATTCTAAGGGCAGTAAAATAAATGATCCACAGAGCTTGGAAAATATTCAGCAAGCTCTCAGGGAAGCCTTGAATGAACCCATCAGGGTGTTGGATCCCAAGACGAGAGGGTTAGTTATAAAGCCGGATCTTGATTTCGAAAGTTCTGATCAAGTCAAGACCAGGGCGGAGGTGCTGTTCAATT
TGATGGACCAGTATTTGAAAAATGATGTCGTAAGCATTCAGAAGGATGTCTTGAACCATGTCGAGTATACAGTTGCGAGCTCGCGGTTCGATTTTAGCGACTTTGAAGCGTACCAGGCCACAGCACATAGTGTACGGGACCGTTTGATTGAAAGTTGGAATGACACTCACCAGTATTTCAGGGAAAAAGATCCAAAGCGG
TTGTTTTTCCTTTCCCTTGAGTTTCTTATGGGACGGTCGTTATCAAACAGCATTTACAATCTTGGCATAAAGGACCAATATTCAGATGCTTTGAAGCAACTTGGCTTTGACTTGGAAACATTGGTGGAGCAGGAAGTAGATGCAGCTCTTGGGAATGGTGGGCTCGCTCGACTCTCGGCATGTCTCATGGACTCACTTGC
AACTCTGGACTTACCGGCCTGGGGATATGGATTGCGTTATCAGTATGGGTTGTTTAGGCAGGTGATAATTGATGGGTTTCAGCGTGAAAAACCAGATTATTGGCTGAATTTTGGTAATCCTTGGGAGATTGAGCGTGCTCATATCACCTATCCAGTAAAGTTTTATGGTAAAGTGGAAGAGGAAGTTCGCAATGGAAAAA
GACAAAAAATATGGATTCCAGGAGAGATGGTAGAAGCTGTTGCATATGATAACCCCATTCCAGGATATGGCACTGGAAATACAATCAACCTTCGGCTTTGGGCAGCCAAACCTAGTGGTGAATCTGATCTGGAATCATTTAATACAGGAGACTATATCAATGCTATAATCAACAAACAACGAGCTGAAACTATAAGCAGT
GTTCTACTCCCAGATGACCGATCTTATCAGGGTAAGGAACTCCATCTGAAGCAGCAATACTTCTTTGTGTCAGCTTCTTTACAGGACATTATGCGGAGGTTCAAAGGCTTTCATATCAATATTGATGATTTTCCTAAACAGATCATATATGATATAAATTTTTTCTTCTTAGAGGATCTGAGAAAACGCATGAGATCAGA
CTATGCTCGTCTTGCTCGAATGTCAATCATTGAAGAAGGCACTACGAAGTGTGTCCGCATGGCAATGCTATCTATTGTAGCCTGCAACAATGTGATTGGTGTGTCCCAAGTCCACTCAGAAATACTTCGAACAACTGTTTTTGCGGACTTCTATGACATTTGGCCTCACAAGTTTCAATCTAAAACAAATGGTGTCAGTC
AGCGACGATGGCTGGCAGCAAGTAATCCTGGTTTACGGGATGTTATCACAAAGTGGCTTGGTACAGAGGCATGGATTAAAGACTTGGACCTTTTATCAGGCTTACGCGACCATGCAAACAATCCACAACTGCAAAATGAATGGAGACAGGTTCATCGAATAAACAAGAGTAGACTAGCTCAATATATAGAAGGAATAAGT
GGCTTGAAGGTTAGCATTGATGCAATGTTCGATGTGCAAGTCAAGCGTATCCATGAGTACAAAAGACAATATCTCAATGTATTGAGCATTATCCACCGGTATGACTGTATAAAGGTATGACTGTATGGCATCTTCCTACAAACTTGAAAATTATTCAAGTGAAATATGAGGTACAAAATTAGAGGAGGCAATGCCTCAAA
GGTGTGTAAGATGAATCTGATAATTATAC
>TRINITY_DN123103_c1_g1_i12 from sample A2 / Example unspliced isoform:GTAAATTTTACGCGTGGCAACGAAGAAATGCCGAAATTGGTATTGGTATCGAAATATAATTAAAGAAAAAAAAAATCCAACTTCCATCGTAATATGTAAATTGCCATGAGCATATTCGAATTCCAAAAGTAGAGTTCTGAGTAGAAGAGTGTTTCTTATTTGGCTCTCGGCTTTGCACAGAATGTTGAGTTCAGCGAAGG
CCAGCGCGCTCAAGCCCCCTCCTAGTTTTCACAGCTCCATATTCAGAGTAGAGGGCTCGCAACCTCTTGCTCACTTGGCGGCCTTCAAAGGCTTGTTCTTCAACCCTTCCAACTATGGCGGATCCACGAGATTATCAGTATCATGCAGCACTCTCAAGAACATATTTGGCGGAGCCGGTGGCTCCAAACCGGCAAAGACG
GAGAAGAAACCCCGTAAAGCCTCTCTTCCACTGCCTGCAACCGTAACCATCGACAACGAATCTTCGGGCGAAAACACGATCCTCATTATCACGGCAGAGAACAGAACGGCTATGCTTCAGATAATCACCAGGGTTCTCAGAGCCATGGGGGTTCAAATTTCGAAGGCGAATGTAAATTTGGACAAAGGGTCCCTTGTCGA
GAAAGTTTTCGTGACCGATTCTAAGGGCAGTAAAATAAATGATCCACAGAGCTTGGAAAATATTCAGCAAGCTCTCAGGGAAGCCTTGAATGAACCCATCAGGGTGTTGGATCCCAAGACGAGAGGGTTAGTTATAAAGCCGGATCTTGATTTCGAAAGTTCTGATCAAGTCAAGACCAGGGCGGAGGTGCTGTTCAATT
TGATGGACCAGTATTTGAAAAATGATGTCGTAAGCATTCAGAAGGATGTCTTGAACCATGTCGAGTATACAGTTGCGAGCTCGCGGTTCGATTTTAGCGACTTTGAAGCGTACCAGGCCACAGCACATAGTGTACGGGACCGTTTGATTGAAAGTTGGAATGACACTCACCAGTATTTCAGGGAAAAAGATCCAAAGCGG
TTGTTTTTCCTTTCCCTTGAGTTTCTTATGGGACGGTCGTTATCAAACAGCATTTACAATCTTGGCATAAAGGACCAATATTCAGATGCTTTGAAGCAACTTGGCTTTGACTTGGAAACATTGGTGGAGCAGGAAGTAGATGCAGCTCTTGGGAATGGTGGGCTCGCTCGACTCTCGGCATGTCTCATGGACTCACTTGC
AACTCTGGACTTACCGGCCTGGGGATATGGATTGCGTTATCAGTATGGGTTGTTTAGGCAGGTGATAATTGATGGGTTTCAGCGTGAAAAACCAGATTATTGGCTGAATTTTGGTAATCCTTGGGAGATTGAGCGTGCTCATATCACCTATCCAGTAAAGTTTTATGGTAAAGTGGAAGAGGAAGTTCGCAATGGAAAAA
GACAAAAAATATGGATTCCAGGAGAGATGGTAGAAGCTGTTGCATATGATAACCCCATTCCAGGATATGGCACTGGAAATACAATCAACCTTCGGCTTTGGGCAGCCAAACCTAGTGGTGAATCTGATCTGGAATCATTTAATACAGGAGACTATATCAATGCTATAATCAACAAACAACGAGCTGAAACTATAAGCAGT
GTTCTACTCCCAGATGACCGATCTTATCAGGGTAAGGAACTCCATCTGAAGCAGCAATACTTCTTTGTGTCAGCTTCTTTACAGGACATTATGCGGAGGTTCAAAGGCTTTCATATCAATATTGATGATTTTCCTAAACAGgtagcattacagctgaatgatacacaaccttcacttgcgatacctgagttaatgcggat
gttggtggatgaggaaaatttggaatggagcagagcatgggaaattgtaaagaaagtattttccttcacaaatcacactgttcttcctgaagctttggagaaaataccagttgagctgttaggaagccttctgccacgacatttacagATCATATATGATATAAATTTTTTCTTCTTAGAGGATCTGAGAAAACGCATGA
GATCAGACTATGCTCGTCTTGCTCGAATGTCAATCATTGAAGAAGGCACTACGAAGTGTGTCCGCATGGCAATGCTATCTATTGTAGCCTGCAACAATGTGATTGGTGTGTCCCAAGTCCACTCAGAAATACTTCGAACAACTGTTTTTGCGGACTTCTATGACATTTGGCCTCACAAGTTTCAATCTAAAACAAATGGT
GTCAGTCAGGTACTATTGTTTTTGTCATTTTTGCAACAAATAGCCCTTTCTGATGCAATGCAATGGGTATGTCATCATACATTTTATCTTTTGCAGTATATCATTGTTAATATTTTCTAACATTGTTATTTGCATTTGATTGATTTTGTTCAACTTGTTCAAGCTTTACATGGACCATTGACAATGTATGTTACTCAATG
GATGCATTGATTTTGTTGTTTACCTAAATCACAATTTTTATTGTGCAAGTAAAGTATATGTACGTCAAGCTATTTTGTATATAAATGCATGATTTTTAAAATAATTTTGTAATCGAAGGTCATAAAAGCAATATTGCACAACTTGGACTCGGCAAAGACTCAGCTGGCATATGACTCGTAGACTCGGGAAAGACTTGGAA
CAGACTCGGCAAATAGGAAAGAAAATAAAAATATCG
Intron 2 GTTTTGAATG ... CATGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.25 | 67 | 13 | 3 |
| A2 | 12.2 | 36 | 5 | 1 |
| A3 | 17.65 | 70 | 15 | 4 |
| A4 | 17.74 | 51 | 11 | 5 |
| A5 | 30.77 | 18 | 8 | 0 |
| A6 | 7.14 | 13 | 1 | 0 |
| A7 | 19.18 | 59 | 14 | 4 |
| A8 | 11.76 | 15 | 2 | 1 |
| A9 | 20.41 | 39 | 10 | 0 |
| A10 | 30.56 | 50 | 22 | 7 |
>TRINITY_DN121061_c1_g2_i5 from sample A3 / Example spliced isoformGCATTATCCGGCCTGGCACGGTCAGGTGCACCCGTACTGATCTTTGATGATAGGCTGATGGCTAGTCGCGACGCTTCTTTCTGGCGCCCAGCTCTTGCCATGTATCCATGCACAGTGGCACTGAAGCAGAATATGATGAATATTGTATTAATAATAAACCAGAACGAAAATGATGTAAATTTTACGCGTGGCAACGAAGA
AATGCCGAAATTGGTATTGGTATCGAAATATAATTAAAGAAAAAAATCCAACTTCCATCGTAATATGTAAATTGCCATGAGCATATTCGAATTCCAAAAGTAGAGTTCTGAGTAGAAGAGTGTTTCTTATTTGGCTCTCGGCTTTGCACAGAATGTTGAGTTCAGCGAAGGCCAGCGCGCTCAAGCCCCCTCCTAGTTTT
CACAGCTCCATATTCAGAGTAGAGGGCTCGCAACCTCTTGCTCACTTGGCGGCCTTCAAAGGCTTGTTCTTCAACCCTTCCAACTATGGCGGATCCACGAGATTATCAGTATCATGCAGCACTCTCAAGAACATATTTGGCGGAGCCGGTGGCTCCAAACCGGCAAAGACGGAGAAGAAACCCCGTAAAGCCTCTCTTCC
ACTGCCTGCAACCGTAACCATCGACAACGAATCTTCGGGCGAAAACACGATCCTCATTATCACGGCAGAGAACAGAACGGCTATGCTTCAGATAATCACCAGGGTTCTCAGAGCCATGGGGGTTCAAATTTCGAAGGCGAATGTAAATTTGGACAAAGGGTCCCTTGTCGAGAAAGTTTTCGTGACCGATTCTAAGGGCA
GTAAAATAAATGATCCACAGAGCTTGGAAAATATTCAGCAAGCTCTCAGGGAAGCCTTGAATGAGCCCATCAGGGTGTTGGATCCCAAGACGAGAGGGTTAGTTATAAAGCCGGATCTTGATTTCGAAAGTTCTGATCAAGTCAAGACCAGGGCGGAGGTGCTGTTCAATTTGATGGACCAGTATTTGAAAAATGATGTC
GTAAGCATTCAGAAGGATGTCTTGAACCATGTCGAGTATACAGTTGCGAGCTCGCGGTTCGATTTTAGCGACTTTGAAGCGTACCAGGCCACAGCACATAGTGTACGGGACCGTTTGATTGAAAGTTGGAATGACACTCACCAGTATTTCAGGGAAAAAGATCCAAAGCGGTTGTTTTTCCTTTCCCTTGAGTTTCTTAT
GGGACGGTCGTTATCAAACAGCATTTACAATCTTGGCATAAAGGACCAATATTCAGATGCTTTGAAGCAACTTGGCTTTGACTTGGAAACATTGGTGGAGCAGGAAGTAGATGCAGCTCTTGGGAATGGTGGGCTCGCTCGACTCTCGGCATGTCTCATGGACTCACTTGCAACTCTGGACTTACCGGCCTGGGGGTTTG
ATTTTTTTCTCTTTTCTTTTCATGTTTCAATAACCTAGTTTCACTGAATGCATATCTGCTTTGGTGTAGAGAGAAAGTCTGGAATGGGGTTGGTTGTATTTCTTTTTGCTATAACCATATCGGTTTCAGGTTTTTTTCTCACAATTGAAATTGGAATTATATCAATGTCCACAAGTGACCAAAACAGGTCAATTGGGCTC
AAGAGTACAACATGCACTAACATATATAAAGGGAGTGGGTGAGGCATATCCCAGCAAAGACAACAGTAATAGAGAAGTTAACTTTAAATCTAAATTAAATAAGTAACAGTAAAGCATAGCTAGCAAAAGGGATCAAGCACAGCAAATAAGCTATCAGCAGGTCTGGTTTACGTGCATTTTGTTCTGCTGCAAATTTTTTA
ATAGTGTCATTTTCATGTCACAGATATGGATTGCGTTATCAGTATGGGTTGTTTAGGCAGGTGATAATTGATGGGTTTCAGCGTGAAAAACCAGATTATTGGCTGAATTTTGGTAATCCTTGGGAGATTGAGCGTGCTCATATCACCTATCCAGTAAAGTTTTATGGTAAAGTGGAAGAGGAAGTTCGCAATGGAAAAAG
ACAAAAAATATGGATTCCAGGAGAGATGGTAGAAGCTGTTGCATATGATAACCCCATTCCAGGATATGGCACTGGAAATACAATCAACCTTCGGCTTTGGGCAGCCAAACCTAGTGGTGAATCTGATCTGGAATCATTTAATACAGGAGACTATATCAATGCTATAATCAACAAACAACGAGCTGAAACTATAAGCAGTG
TTCTACTCCCAGATGACCGATCTTATCAGGGTAAGGAACTCCATCTGAAGCAGCAATACTTCTTTGTGTCAGCTTCTTTACAGGACATTATGCGGAGGTTCAAAGGCTTTCATATCAATATTGATGATTTTCCTAAACAGGTAGCATTACAGCTGAATGATACACAACCTTCACTTGCGATACCTGAGTTAATGCGGATG
TTGGTGGATGAGGAAAATTTGGAATGGAGCAGAGCATGGGAAATTGTAAAGAAAGTATTTTCCTTCACAAATCACACTGTTCTTCCTGAAGCTTTGGAGAAAATACCAGTTGAGCTGTTAGGAAGCCTTCTGCCACGACATTTACAGATCATATATGATATAAATTTTTTCTTCTTAGAGGATCTGAGAAAACGCATGAG
ATCAGACTATGCTCGTCTTGCTCGAATGTCAATCATTGAAGAAGGCACTACGAAGTGTGTCCGCATGGCAATGCTATCTATTGTAGCCTGCAACAATGTGATTGGTGTGTCCCAAGTCCACTCAGAAATACTTCGAACAACAGTTTTTGCGGACTTCTATGACATTTGGCCTCACAAGTTTCAATCTAAAACAAATGGTG
TCAGTCAGCGACGATGGCTGGCAGCAAGTAATCCTGGTTTACGGGATGTTATCACAAAGTGGCTTGGTACAGAGGCATGGATTAAAGACTTGGACCTTTTATCAGGCTTACGCGACCATGCAAACAATCCACAACTGCAAAATGAATGGAGACAGGTTCATCGAATAAACAAGAGTAGACTAGCTCAATATATAGAAGGA
ATAAGTGGCTTGAAGGTTAGCATTGATGCAATGTTCGATGTGCAAGTCAAGCGTATCCATGAGTACAAAAGACAATATCTCAATGTATTGAGCATTATCCACCGGTATGACTGTATAAAGGTATGACTGTATGGCATCTTCCTACAAACTTGAAAATTATTCAAGTGAAATATGAGGTACAAAATTAGAGGAGGCAATGC
CTCAAAGGTGTGTAAGATGAATCTGATAATTA
>TRINITY_DN121061_c1_g2_i8 from sample A3 / Example unspliced isoform:GCATTATCCGGCCTGGCACGGTCAGGTGCACCCGTACTGATCTTTGATGATAGGCTGATGGCTAGTCGCGACGCTTCTTTCTGGCGCCCAGCTCTTGCCATGTATCCATGCACAGTGGCACTGAAGCAGAATATGATGAATATTGTATTAATAATAAACCAGAACGAAAATGATGTAAATTTTACGCGTGGCAACGAAGA
AATGCCGAAATTGGTATTGGTATCGAAATATAATTAAAGAAAAAAATCCAACTTCCATCGTAATATGTAAATTGCCATGAGCATATTCGAATTCCAAAAGTAGAGTTCTGAGTAGAAGAGTGTTTCTTATTTGGCTCTCGGCTTTGCACAGAATGTTGAGTTCAGCGAAGGCCAGCGCGCTCAAGCCCCCTCCTAGTTTT
CACAGCTCCATATTCAGAGTAGAGGGCTCGCAACCTCTTGCTCACTTGGCGGCCTTCAAAGGCTTGTTCTTCAACCCTTCCAACTATGGCGGATCCACGAGATTATCAGTATCATGCAGCACTCTCAAGAACATATTTGGCGGAGCCGGTGGCTCCAAACCGGCAAAGACGGAGAAGAAACCCCGTAAAGCCTCTCTTCC
ACTGCCTGCAACCGTAACCATCGACAACGAATCTTCGGGCGAAAACACGATCCTCATTATCACGGCAGAGAACAGAACGGCTATGCTTCAGATAATCACCAGGGTTCTCAGAGCCATGGGGGTTCAAATTTCGAAGGCGAATGTAAATTTGGACAAAGGGTCCCTTGTCGAGAAAGTTTTCGTGACCGATTCTAAGGGCA
GTAAAATAAATGATCCACAGAGCTTGGAAAATATTCAGCAAGCTCTCAGGGAAGCCTTGAATGAGCCCATCAGGGTGTTGGATCCCAAGACGAGAGGGTTAGTTATAAAGCCGGATCTTGATTTCGAAAGTTCTGATCAAGTCAAGACCAGGGCGGAGGTGCTGTTCAATTTGATGGACCAGTATTTGAAAAATGATGTC
GTAAGCATTCAGAAGGATGTCTTGAACCATGTCGAGTATACAGTTGCGAGCTCGCGGTTCGATTTTAGCGACTTTGAAGCGTACCAGGCCACAGCACATAGTGTACGGGACCGTTTGATTGAAAGTTGGAATGACACTCACCAGTATTTCAGGGAAAAAGATCCAAAGCGGTTGTTTTTCCTTTCCCTTGAGTTTCTTAT
GGGACGGTCGTTATCAAACAGCATTTACAATCTTGGCATAAAGGACCAATATTCAGATGCTTTGAAGCAACTTGGCTTTGACTTGGAAACATTGGTGGAGCAGGAAGTAGATGCAGCTCTTGGGAATGGTGGGCTCGCTCGACTCTCGGCATGTCTCATGGACTCACTTGCAACTCTGGACTTACCGGCCTGGGGGTTTG
ATTTTTTTCTCTTTTCTTTTCATGTTTCAATAACCTAGTTTCACTGAATGCATATCTGCTTTGGTGTAGAGAGAAAGTCTGGAATGGGGTTGGTTGTATTTCTTTTTGCTATAACCATATCGGTTTCAGGTTTTTTTCTCACAATTGAAATTGGAATTATATCAATGTCCACAAGTGACCAAAACAGGTCAATTGGGCTC
AAGAGTACAACATGCACTAACATATATAAAGGGAGTGGGTGAGGCATATCCCAGCAAAGACAACAGTAATAGAGAAGTTAACTTTAAATCTAAATTAAATAAGTAACAGTAAAGCATAGCTAGCAAAAGGGATCAAGCACAGCAAATAAGCTATCAGCAGGTCTGGTTTACGTGCATTTTGTTCTGCTGCAAATTTTTTA
ATAGTGTCATTTTCATGTCACAGATATGGATTGCGTTATCAGTATGGGTTGTTTAGGCAGGTGATAATTGATGGGTTTCAGCGTGAAAAACCAGATTATTGGCTGAATTTTGGTAATCCTTGGGAGATTGAGCGTGCTCATATCACCTATCCAGTAAAGTTTTATGGTAAAGTGGAAGAGGAAGTTCGCAATGGAAAAAG
ACAAAAAATATGGATTCCAGGAGAGATGGTAGAAGCTGTTGCATATGATAACCCCATTCCAGGATATGGCACTGGAAATACAATCAACCTTCGGCTTTGGGCAGCCAAACCTAGTGGTGAATCTGATCTGGAATCATTTAATACAGGAGACTATATCAATGCTATAATCAACAAACAACGAGCTGAAACTATAAGCAGTG
TTCTACTCCCAGATGACCGATCTTATCAGgttttgaatgtggtcatgttgcagGGTAAGGAACTCCATCTGAA
Intron 3 GTAAGACAGT ... TTGCCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.77 | 13 | 30 | 6 |
| A2 | 73.68 | 10 | 28 | 7 |
| A3 | 62.5 | 12 | 20 | 13 |
| A4 | 88.24 | 2 | 15 | 3 |
| A5 | 60 | 6 | 9 | 3 |
| A6 | 64.57 | 163 | 297 | 49 |
| A7 | 63.97 | 98 | 174 | 36 |
| A8 | 63.31 | 153 | 264 | 73 |
| A9 | 60.73 | 108 | 167 | 26 |
| A10 | 60 | 44 | 66 | 19 |
>TRINITY_DN42705_c0_g1_i1 from sample A9 / Example spliced isoformTCTCAAGACTCAATGCATTATCCGGCCTGGCACGGTCAGGTGCACCCGTACTGATCTTTGATGATAGGCTGATGGCTAGTCGCGACGCTTCTTTCTGGCGCCCAGCTCTTGCCATGTATCCATGCACAGTGGCACTGAAGCAGAATATGATGAATATTGTATTAATAATAAACCAGAACGAAAATGATGTAAATTTTACG
CGTGGCAACGAAGAAATGCCGAAATTGGTATTGGTATCGAAATATAATTAAAGAAAAAAAAATCCAACTTCCATCGTAATATGTAAATTGCCATGAGCATATTCGAATTCCAAAAGTAGAGTTCTGAGTAGAAGAGTGTTTCTTATTTGGCTCTCGGCTTTGCACAGAATGTTGAGTTCAGCGAAGGCCAGCGCGCTCAA
GCCCCCTCCTAGTTTTCACAGCTCCATATTCAGAGTAGAGGGCTCGCAACCTCTTGCTCACTTGGCGGCCTTCAAAGGCTTGTTCTTCAACCCTTCCAACTATGGCGGATCCACGAGATTATCAGTATCATGCAGCACTCTCAAGAACATATTTGGCGGAGCCGGTGGCTCCAAACCGGCAAAGACGGAGAAGAAACCCC
GTAAAGCCTCTCTTCCACTGCCTGCAACCGTAACCATCGACAACGAATCTTCGGGCGAAAACACGATCCTCATTATCACGGCAGAGAACAGAACGGCTATGCTTCAGATAATCACCAGGGTTCTCAGAGCCATGGGGGTTCAAATTTCGAAGGCGAATGTAAATTTGGACAAAGGGTCTCTTGTCGAGAAAGTTTTCGTG
ACCGATTCTAAGGGCAGTAAAATAAATGATCCACAGAGCTTGGAAAATATTCAGCAAGCTCTCAGGGAAGCCTTGAATGAACCCATCAGGGTGTTGGATCCCAAGACGAGAGGGTTAGTTATAAAGCCGGATCTTGATTTCGAAAGTTCTGATCAAGTCAAGACCAGGGCGGAGGTGCTGTTCAATTTGATGGACCAGTA
TTTGAAAAATGATGTCGTAAGCATTCAGAAGGATGTCTTGAACCATGTCGAGTATACAGTTGCGAGCTCGCGGTTCGATTTTAGCGACTTTGAAGCGTACCAGGCCACAGCACATAGTGTACGGGACCGTTTGATTGAAAGTTGGAATGACACTCACCAGTACTTCAGGGAAAAAGATCCAAAGCGGTTGTTTTTCCTTT
CCCTTGAGTTTCTTATGGGACGGTCGTTATCAAACAGCATTTACAATCTTGGCATAAAGGACCAATATTCAGATGCTTTGAAGCAACTTGGCTTTGACTTGGAAACATTGGTGGAGCAGGAAGTAGATGCAGCTCTTGGGAATGGTGGGCTCGCTCGACTCTCGGCATGTCTCATGGACTCACTTGCAACTCTGGACTTA
CCGGCCTGGGGATATGGATTGCGTTATCAGTATGGGTTGTTTAGGCAGGTGATAATTGATGGGTTTCAGCGTGAAAAACCAGATTATTGGCTGAATTTTGGTAATCCTTGGGAGATTGAGCGTGCTCATATCACCTATCCAGTAAAGTTTTATGGTAAAGTGGAAGAGGAAGTTCGCAATGGAAAAAGACAAAAAATATG
GATTCCAGGAGAGATGGTAGAAGCTGTTGCATATGATAACCCCATTCCAGGATATGGCACTGGAAATACAATCAACCTTCGGCTTTGGGCAGCCAAACCTAGTGGTGAATCTGATCTGGAATCATTTAATACAGGAGACTATATCAATGCTATAATCAACAAACAACGAGCTGAAACTATAAGCAGTGTTCTACTCCCAG
ATGACCGATCTTATCAGGGTAAGGAACTCCATCTGAAGCAGCAATACTTCTTTGTGTCAGCTTCTTTACAGGACATTATGCGGAGGTTCAAAGGCTTTCATATCAATATTGATGATTTTCCTAAACAGGTAGCATTACAGCTGAATGATACACAACCTTCACTTGCGATACCTGAGTTAATGCGGATGTTGGTGGATGAG
GAAAATTTGGAATGGAGCAGAGCATGGGAAATTGTAAAGAAAGTATTTTCCTTCACAAATCACACTGTTCTTCCTGAAGCTTTGGAGAAAATACCAGTTGAGCTGTTAGGAAGCCTTCTGCCACGACATTTACAGATCATATATGATATAAATTTTTTCTTCTTAGAGGATCTGAGAAAACGCATGAGATCAGACTATGC
TCGTCTTGCTCGAATGTCAATCATTGAAGAAGGCACTACGAAGTGTGTCCGCATGGCAATGCTATCTATTGTAGCCTGCAACAATGTGATTGGTGTGTCCCAAGTCCACTCAGAAATACTTCGAACAACAGTTTTTGCGGACTTCTATGACATTTGGCCTCACAAGTTTCAATCTAAAACAAATGGTGTCAGTCAGCGAC
GATGGCTGGCAGTAAGTAATCCTGGTTTACGGGATGTTATCACAAAGTGGCTTGGTACAGAGGCATGGATTAAAGACTTGGACCTTTTATCAGGCTTACGCGACCATGCAAACAATCCACAACTGCAAAATGAATGGAGACAGGTTCATCAAATGAACAAGAGTAGATTAGCTCAATATATAGAAGGAATAAGTGGCTTG
AAGGTTAGCATTGATGCAATGTTCGATGTGCAAGTCAAGCGTATCCATGAGTACAAAAGACAATATCTCAATGTATTGAGCATTATCCACCGGTATGACTGTATAAAGAATATGACCAGTGACGAGAGGAAGAAAGTTGTGCCACGGGTATGTCTTATTGGAGGAAAGGCAGCCCCAGGATACGAGATTGCAAAAAAAAT
TATAAAACTCATTCATGCAGTTGGTGGAAAGATTAACAATGATCCAGACATTGGGAACCTTCTGAAATTGGTATTTGTTCCAGATTACAATGTGTCTGTAGCTGAACTGATAATACCTGCAAGTGATGTATCTCAACACATCAGCACGGCTGGACATGAAGCATCAGGAACAAGCAGCATGAAATTTCTAATGAATGGCT
GTCTTATTCTTGGGACCCTGGATGGAGCAGCTGTTGAAATAGCCGAAGAAATAGGAGAGCAGAATATGTTCATATTTGGTGCTAAAGTACATGAAGTTCCTAAGCTTCGAGCTCAAAGGAATGATTTTCAACCACCCCGTGAGTTTACCCGTGTCATTAGGATGATCCGGGATGGCTATTTTGGCTTCAAAGAGTATTTT
AAATCATTATGTGACACAGTTGATGGTGAAGGTGGAGATTTCTATCTGCTGGGAAATGACTTTGCAAGTTATTTGGAAGCGCAGGCAGTAGTAGACAGGACATTTGTTGACAAGGAAAAATGGACACACATGAGTATTCTTGGCACTGCTGGTTCAGGGAAATTCAGCAGCGACCGAGCAATTAGAGAATATGCTGAACA
GGCTTGGGGTATTAAGCCTTGCAAGCGGCCAAGTTAGGAAAAATTGGAGTAGATGTCTCTCTCGTATGTTTTAAAGGTCAAATTAGACACCATACAAAGAATCTGATGTTTAACTGTTTAACCTGCCTAAGCATCATCATGTGTACACCTAAGAGGATATGGTTGTGGCTCACATTAAAACCCAACATCTTGTCTTGTCT
TAAGGGTCTCAAATGTATAGCTTAGTGAAGAGGAGTGAGCTAAAGTTGAACCGTGCAGTCATGCAAGAGGATGCCTCATCTAGCTGTAATTTAATTTAGAGCATATATTTTCACTAGTGTGTACTCTGTTTTCTTTGGATTTTTTAGGGGTGTTAATGATATCATTGATTCAAACTGTATGCCGTGGTCAGTGGTTAGGC
TCTCTTATATTATCATTGTATGGATTCTAAACTGCAAGAAATGGGAAACTATCATGCCTATCTTTCTTAGAATTTCATTGAGCAGGTCAGATGTTCTGCAAAGAAAAAGCCTCTTGCAAATCATTTACCTGGCCACAACGTTGTTGCAAAAAAATTGAAATAAATAAAAAA
>TRINITY_DN42705_c0_g1_i2 from sample A9 / Example unspliced isoform:TCTCAAGACTCAATGCATTATCCGGCCTGGCACGGTCAGGTGCACCCGTACTGATCTTTGATGATAGGCTGATGGCTAGTCGCGACGCTTCTTTCTGGCGCCCAGCTCTTGCCATGTATCCATGCACAGTGGCACTGAAGCAGAATATGATGAATATTGTATTAATAATAAACCAGAACGAAAATGATGTAAATTTTACG
CGTGGCAACGAAGAAATGCCGAAATTGGTATTGGTATCGAAATATAATTAAAGAAAAAAAAATCCAACTTCCATCGTAATATGTAAATTGCCATGAGCATATTCGAATTCCAAAAGTAGAGTTCTGAGTAGAAGAGTGTTTCTTATTTGGCTCTCGGCTTTGCACAGAATGTTGAGTTCAGCGAAGGCCAGCGCGCTCAA
GCCCCCTCCTAGTTTTCACAGCTCCATATTCAGAGTAGAGGGCTCGCAACCTCTTGCTCACTTGGCGGCCTTCAAAGGCTTGTTCTTCAACCCTTCCAACTATGGCGGATCCACGAGATTATCAGTATCATGCAGCACTCTCAAGAACATATTTGGCGGAGCCGGTGGCTCCAAACCGGCAAAGACGGAGAAGAAACCCC
GTAAAGCCTCTCTTCCACTGCCTGCAACCGTAACCATCGACAACGAATCTTCGGGCGAAAACACGATCCTCATTATCACGGCAGAGAACAGAACGGCTATGCTTCAGATAATCACCAGGGTTCTCAGAGCCATGGGGGTTCAAATTTCGAAGGCGAATGTAAATTTGGACAAAGGGTCTCTTGTCGAGAAAGTTTTCGTG
ACCGATTCTAAGGGCAGTAAAATAAATGATCCACAGAGCTTGGAAAATATTCAGCAAGCTCTCAGGGAAGCCTTGAATGAACCCATCAGGGTGTTGGATCCCAAGACGAGAGGGTTAGTTATAAAGCCGGATCTTGATTTCGAAAGTTCTGATCAAGTCAAGACCAGGGCGGAGGTGCTGTTCAATTTGATGGACCAGTA
TTTGAAAAATGATGTCGTAAGCATTCAGAAGGATGTCTTGAACCATGTCGAGTATACAGTTGCGAGCTCGCGGTTCGATTTTAGCGACTTTGAAGCGTACCAGGCCACAGCACATAGTGTACGGGACCGTTTGATTGAAAGTTGGAATGACACTCACCAGTACTTCAGGGAAAAAGATCCAAAGCGGTTGTTTTTCCTTT
CCCTTGAGTTTCTTATGGGACGGTCGTTATCAAACAGCATTTACAATCTTGGCATAAAGGACCAATATTCAGATGCTTTGAAGCAACTTGGCTTTGACTTGGAAACATTGGTGGAGCAGGAAGTAGATGCAGCTCTTGGGAATGGTGGGCTCGCTCGACTCTCGGCATGTCTCATGGACTCACTTGCAACTCTGGACTTA
CCGGCCTGGGGATATGGATTGCGTTATCAGTATGGGTTGTTTAGGCAGGTGATAATTGATGGGTTTCAGCGTGAAAAACCAGATTATTGGCTGAATTTTGGTAATCCTTGGGAGATTGAGCGTGCTCATATCACCTATCCAGTAAAGTTTTATGGTAAAGTGGAAGAGGAAGTTCGCAATGGAAAAAGACAAAAAATATG
GATTCCAGGAGAGATGGTAGAAGCTGTTGCATATGATAACCCCATTCCAGGATATGGCACTGGAAATACAATCAACCTTCGGCTTTGGGCAGCCAAACCTAGTGGTGAATCTGATCTGGAATCATTTAATACAGGAGACTATATCAATGCTATAATCAACAAACAACGAGCTGAAACTATAAGCAGTGTTCTACTCCCAG
ATGACCGATCTTATCAGGGTAAGGAACTCCATCTGAAGCAGCAATACTTCTTTGTGTCAGCTTCTTTACAGGACATTATGCGGAGGTTCAAAGGCTTTCATATCAATATTGATGATTTTCCTAAACAGGTAGCATTACAGCTGAATGATACACAACCTTCACTTGCGATACCTGAGTTAATGCGGATGTTGGTGGATGAG
GAAAATTTGGAATGGAGCAGAGCATGGGAAATTGTAAAGAAAGTATTTTCCTTCACAAATCACACTGTTCTTCCTGAAGCTTTGGAGAAAATACCAGTTGAGCTGTTAGGAAGCCTTCTGCCACGACATTTACAGATCATATATGATATAAATTTTTTCTTCTTAGAGGATCTGAGAAAACGCATGAGATCAGACTATGC
TCGTCTTGCTCGAATGTCAATCATTGAAGAAGGCACTACGAAGTGTGTCCGCATGGCAATGCTATCTATTGTAGCCTGCAACAATGTGATTGGTGTGTCCCAAGTCCACTCAGAAATACTTCGAACAACAGTTTTTGCGGACTTCTATGACATTTGGCCTCACAAGTTTCAATCTAAAACAAATGGTGTCAGTCAGCGAC
GATGGCTGGCAGTAAGTAATCCTGGTTTACGGGATGTTATCACAAAGTGGCTTGGTACAGAGGCATGGATTAAAGACTTGGACCTTTTATCAGGCTTACGCGACCATGCAAACAATCCACAACTGCAAAATGAATGGAGACAGGTTCATCAAATGAACAAGAGTAGATTAGCTCAATATATAGAAGGAATAAGTGGCTTG
AAGGTTAGCATTGATGCAATGTTCGATGTGCAAGTCAAGCGTATCCATGAGTACAAAAGACAATATCTCAATGTATTGAGCATTATCCACCGGTATGACTGTATAAAGAATATGACCAGTGACGAGAGGAAGAAAGTTGTGCCACGGGTATGTCTTATTGGAGGAAAGGCAGCCCCAGGATACGAGATTGCAAAAAAAAT
TATAAAACTCATTCATGCAGTTGGTGGAAAGATTAACAATGATCCAGACATTGGGAACCTTCTGAAATTGGTATTTGTTCCAGATTACAATGTGTCTGTAGCTGAACTGATAATACCTGCAAGTGATGTATCTCAACACATCAGCACGGCTGGACATGAAGCATCAGGAACAAGCAGCATGAAATTTCTAATGAATGGCT
GTCTTATTCTTGGGACCCTGGATGGAGCAGCTGTTGAAATAGCCGAAGAAATAGGAGAGCAGAATATGTTCATATTTGGTGCTAAAGTACATGAAGTTCCTAAGCTTCGAGCTCAAAGGAATGATTTTCAACCACCCCGTGAGTTTACCCGTGTCATTAGGATGATCCGGGATGGCTATTTTGGCTTCAAAGAGTATTTT
AAATCATTATGTGACACAGTTGATGGTGAAGGTGGAGATTTCTATCTGCTGGGAAATGACTTTGCAAGTTATTTGGAAGCGCAGGCAGTAGTAGACAGGACATTTGTTGACAAGGAAAAATGGACACACATGAGTATTCTTGGCACTGCTGGTTCAGGGAAATTCAGCAGCGACCGAGCAATTAGAGAATATGCTGAACA
GGCTTGGGGTATTAAGCCTTGCAAGCGGCCAAGTTAGGAAAAATTGGAGTAGATGTCTCTCTCGTATGTTTTAAAGGTCAAATTAGACACCATACAAAGAATCTGATGTTTAACTGTTTAACCTGCCTAAGCATgtaagacagttactttcccagttttgataatctttatacatacttgattgtaaactcgtgatcatt
tggatcattaggctatttcaacaatgaatatttatttttcgattttccatggcatttttttgtttgcctgcagCATCATGTGTACACCTAAGAGGATATGGTTGTGGCTCACATTAAAACCCAACATCTTGTCTTGTCTTAAGGGTCTCAAATGTATAGCTTAGTGAAGAGGAGTGAGCTAAAGTTGAACCGTGCAGTCA
TGCAAGAGGATGCCTCATCTAGCTGTAATTTAATTTAGAGCATATATTTTCACTAGTGTGTACTCTGTTTTCTTTGGATTTTTTAGGGGTGTTAATGATATCATTGATTCAAACTGTATGCCGTGGTCAGTGGTTAGGCTCTCTTATATTATCATTGTATGGATTCTAAACTGCAAGAAATGGGAAACTATCATGCCTAT
CTTTCTTAGAATTTCATTGAGCAGGTCAGATGTTCTGCAAAGAAAAAGCCTCTTGCAAATCATTTACCTGGCCACAACGTTGTTGCAAAAAAATTGAAATAAATAAAAAA
Intron 4 GTTTGTTGTG ... TATTTTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.53 | 78 | 39 | 9 |
| A2 | 22.77 | 78 | 35 | 11 |
| A3 | 17.7 | 86 | 27 | 10 |
| A4 | 24.53 | 60 | 24 | 15 |
| A5 | 25.27 | 34 | 16 | 7 |
| A6 | 23.08 | 30 | 12 | 6 |
| A7 | 20.21 | 77 | 21 | 18 |
| A8 | 16.67 | 20 | 5 | 3 |
| A9 | 15.29 | 72 | 24 | 2 |
| A10 | 19.53 | 68 | 21 | 12 |
>TRINITY_DN108543_c1_g1_i4 from sample A4 / Example spliced isoformTGAGCATATTCGAATTCCAAAAGTAGAGTTCTGAGTAGAAGAGTGTTTCTTATTTGGCTCTCGGCTTTGCACAGAATGTTGAGTTCAGCGAAGGCCAGCGCGCTCAAGCCCCCTCCTAGTTTTCACAGCTCCATATTCAGAGTAGAGGGCTCGCAACCTCTTGCTCACTTGGCGGCCTTCAAAGGCTTGTTCTTCAACCC
TTCCAACTATGGCGGATCCACGAGATTATCAGTATCATGCAGCACTCTCAAGAACATATTTGGCGGAGCCGGTGGCTCCAAACCGGCAAAGACGGAGAAGAAACCCCGTAAAGCCTCTCTTCCACTGCCTGCAACCGTAACCATCGACAACGAATCTTCGGGCGAAAACACGATCCTCATTATCACGGCAGAGAACAGAA
CGGCTATGCTTCAGATAATCACCAGGGTTCTCAGAGCCATGGGGGTTCAAATTTCGAAGGCGAATGTAAATTTGGACAAAGGGTCTCTTGTCGAGAAAGTTTTCGTGACCGATTCTAAGGGCAGTAAAATAAATGATCCACAGAGCTTGGAAAATATTCAGCAAGCTCTCAGGGAAGCCTTGAATGAGCCCATCAGGGTG
TTGGATCCCAAGATGAGAGGGTTAGTTATAAAGCCGGATCTTGATTTCGAAAGTTCTGATCAAGTCAAGACCAGGGCGGAGGTGCTGTTCAATTTGATGGACCAGTATTTGAAAAATGATGTCGTAAGCATTCAGAAGGATGTCTTGAACCATGTCGAGTATACAGTTGCGAGCTCGCGGTTCGATTTTAGCGACTTTGA
AGCGTACCAGGCCACAGCACATAGTGTACGGGACCGTTTGATTGAAAGTTGGAATGACACTCACCAGTACTTCAGGGAAAAAGATCCAAAGCGGTTGTTTTTCCTTTCCCTTGAGTTTCTTATGGGACGGTCGTTATCAAACAGCATTTACAATCTTGGCATAAAGGACCAATATTCAGATGCTTTGAAGCAACTTGGCT
TTGACTTGGAAACATTGGTGGAGCAGGAAGTAGATGCAGCTCTTGGGAATGGTGGGCTCGCTCGACTCTCGGCATGTCTCATGGACTCACTTGCAACTCTGGACTTACCGGCCTGGGGATATGGATTGCGTTATCAGTATGGGTTGTTTAGGCAGGTGATAATTGATGGGTTTCAGCGTGAAAAACCAGATTATTGGCTG
AATTTTGGTAATCCTTGGGAGATTGAGCGTGCTCATATCACCTATCCAGTAAAGTTTTATGGTAAAGTGGAAGAGGAAGTTCGCAATGGAAAAAGACAAAAAATATGGATTCCAGGAGAGATGGTAGAAGCTGTTGCATATGATAACCCCATTCCAGGATATGGCACTGGAAATACAATCAACCTTCGGCTTTGGGCAGC
CAAACCTAGTGGTGAATCTGATCTGGAATCATTTAATACAGGAGACTATATCAATGCTATAATCAACAAACAACGAGCTGAAACTATAAGCAGTGTTCTACTCCCAGATGACCGATCTTATCAGGGTAAGGAACTCCATCTGAAGCAGCAATACTTCTTTGTGTCAGCTTCTTTACAGGACATTATGCGGAGGTTCAAAG
GCTTTCATATCAATATTGATGATTTTCCTAAACAGGTAGCATTACAGCTGAATGATACACAACCTTCACTTGCGATACCTGAGTTAATGCGGATGTTGGTGGATGAGGAAAATTTGGAATGGAGCAGAGCATGGGAAATTGTAAAGAAAGTATTTTCCTTCACAAATCACACTGTTCTTCCTGAAGCTTTGGAGAAAATA
CCAGTTGAGCTGTTAGGAAGCCTTCTGCCACGACATTTACAGATCATATATGATATAAATTTTTTCTTCTTAGAGGATCTGAGAAAACGCATGAGATCAGACTATGCTCGTCTTGCTCGAATGTCAATCATTGAAGAAGGCACTACGAAGTGTGTCCGCATGGCAATGCTATCTATTGTAGCCTGCAACAATGTGATTGG
TGTGTCCCAAGTCCACTCAGAAATACTTCGAACAACTGTTTTTGCGGACTTCTATGACATTTGGCCTCACAAGTTTCAATCTAAAACAAATGGTGTCAGTCAGCGACGATGGCTGGCAGCAAGTAATCCTGGTTTACGGGATGTTATCACAAAGTGGCTTGGTACAGAGGCATGGATTAAAGACTTGGACCTTTTATCAG
GCTTACGCGACCATGCAAACAATCCACAACTGCAAAATGAATGGAGACAGGTTCATCGAATAAACAAGAGTAGACTAGCTCAATATATAGAAGGAATAAGTGGCTTGAAGGTTAGCATTGATGCAATGTTCGATGTGCAAGTCAAGCGTATCCATGAGTACAAAAGACAATATCTCAATGTATTGAGCATTATCCACCGG
TATGACTGTATAAAGAATATGACCAGTGACGAGAGGAAGAAAGTTGTGCCACGGGTATGTCTTATTGGAGGAAAGGCAGCCCCAGGATACGAGATTGCAAAAAAAATAATAAAACTCATTCATGCAGTTGGTGGAAAGATTAACAATGATCCAGACATTGGGAACCTTCTGAAATTGGTATTTGTTCCAGATTACAATGT
GTCTGTAGCTGAACTGATAATACCTGCAAGTGATGTATCTCAACACATCAGCACGGCTGGACATGAAGCATCAGGAACAAGCAGCATGAAATTTCTAATGAATGGCTGTCTTATTCTTGGGACCCTGGATGGAGCAGCTGTTGAAATAGCAGAAGAAATAGGAGAGCAGAATATGGTAAATATTTTCTTAAACTCATTAA
TCTTCTATATTTGTCAATGCAGTGTTTTTTTTTCTTATAAAGGGTTTGATGGTATCACGTACATAATCAGATTATGAACAAAAGGTGAGTTTAAACAAAGAAAATAAATGCTGGTTACAGTTATTTGTTATCTTCCTAGTTTCCTCATTTCATTTTAGTAAGTGATTGGTACTGTTGACATCCTTTCTGAAGCTCTTTGA
AAGCACACTCTAATATCCTCAATCGGATACATCAACATATTAAATAGAAATTAATATCATTCTTTATAAATATATTAATATGTTAGGGTCATGACTCTTTATGTTGAACTGTTTTGATCATGCCACATTGCATATGAGAACCATTGATACTGCTAACTTCGTGTTGTGTTGTGATGTGTGAGGATGACCATGCACATGAA
GAACTCTGGATCTTCATTGTGACCACTCATCTTCAAGCCTTAATATATATAATATTATAAAACCAAACCATTCACTCATTGTAATCATCACTTTCATATCAAT
>TRINITY_DN108543_c1_g1_i5 from sample A4 / Example unspliced isoform:TGAGCATATTCGAATTCCAAAAGTAGAGTTCTGAGTAGAAGAGTGTTTCTTATTTGGCTCTCGGCTTTGCACAGAATGTTGAGTTCAGCGAAGGCCAGCGCGCTCAAGCCCCCTCCTAGTTTTCACAGCTCCATATTCAGAGTAGAGGGCTCGCAACCTCTTGCTCACTTGGCGGCCTTCAAAGGCTTGTTCTTCAACCC
TTCCAACTATGGCGGATCCACGAGATTATCAGTATCATGCAGCACTCTCAAGAACATATTTGGCGGAGCCGGTGGCTCCAAACCGGCAAAGACGGAGAAGAAACCCCGTAAAGCCTCTCTTCCACTGCCTGCAACCGTAACCATCGACAACGAATCTTCGGGCGAAAACACGATCCTCATTATCACGGCAGAGAACAGAA
CGGCTATGCTTCAGATAATCACCAGGGTTCTCAGAGCCATGGGGGTTCAAATTTCGAAGGCGAATGTAAATTTGGACAAAGGGTCTCTTGTCGAGAAAGTTTTCGTGACCGATTCTAAGGGCAGTAAAATAAATGATCCACAGAGCTTGGAAAATATTCAGCAAGCTCTCAGGGAAGCCTTGAATGAGCCCATCAGGGTG
TTGGATCCCAAGATGAGAGGGTTAGTTATAAAGCCGGATCTTGATTTCGAAAGTTCTGATCAAGTCAAGACCAGGGCGGAGGTGCTGTTCAATTTGATGGACCAGTATTTGAAAAATGATGTCGTAAGCATTCAGAAGGATGTCTTGAACCATGTCGAGTATACAGTTGCGAGCTCGCGGTTCGATTTTAGCGACTTTGA
AGCGTACCAGGCCACAGCACATAGTGTACGGGACCGTTTGATTGAAAGTTGGAATGACACTCACCAGTACTTCAGGGAAAAAGATCCAAAGCGGTTGTTTTTCCTTTCCCTTGAGTTTCTTATGGGACGGTCGTTATCAAACAGCATTTACAATCTTGGCATAAAGGACCAATATTCAGATGCTTTGAAGCAACTTGGCT
TTGACTTGGAAACATTGGTGGAGCAGGAAGTAGATGCAGCTCTTGGGAATGGTGGGCTCGCTCGACTCTCGGCATGTCTCATGGACTCACTTGCAACTCTGGACTTACCGGCCTGGGGGTTTGATTTTTTTCTCTTTTCTTTTCATGTTTCAATAACCTAGTTTCACTGAATGCATATCTGCTTTGGTGTAGAGAGAAAG
TCTGGAATGGGGTTGGTTGTATTTCTTTTTGCTATAACCATATCAGTTTCAGGTTTTTTTCTCACAATTGAAATTGGAATTATATCAATGTCCACAAGTGACCAAAACAGGTCAATTGGGCTCAAGAGTACAACATGCACTAACATATATAAAGGGAGTGGGTGAGGCATATCCCAGCAAAGACAACAGTAATAGAGAAG
TTAACTTTAAATCTAAATTAAATAAGTAACAGTAAAGCATAGCTAGCAAAAGGGATCAAGCACAGCAAATAAGCTATCAGCAGGTCTGGTTTACGTGCATTTTGTTCTGCTGCAAATTTTTTAATAGTGTCATTTTCATGTCACAGATATGGATTGCGTTATCAGTATGGGTTGTTTAGGCAGGTGATAATTGATGGGTT
TCAGCGTGAAAAACCAGATTATTGGCTGAATTTTGGTAATCCTTGGGAGATTGAGCGTGCTCATATCACCTATCCAGTAAAGgtttgttgtgaaaagatcactctttgcctcggtatgtgtttcactcacatacacactgcaagtcttgttaatcctcagtatgtgtctgctattaatcctctataaaatatttctagtc
caacatttatatttttatctcatagaataatatattttccttatatattttatagTTTTATGGTAAAGTGGAAGAGGAAGTTCGCAATGGAAAAAGACAAAAAATATGGATTCCAGGAGAGATGGTAGAAGCTGTTGCATATGATAACCCCATTCCAGGATATGGCACTGGAAATACAATCAACCTTCGGCTTTGGGCAG
CCAAACCTAGTGGTGAATCTGATCTGGAATCATTTAATACAGGAGACTATATCAATGCTATAATCAACAAACAACGAGCTGAAACTATAAGCAGTGTTCTACTCCCAGATGACCGATCTTATCAGGGTAAGGAACTCCATCTGAAGCAGCAATACTTCTTTGTGTCAGCTTCTTTACAGGACATTATGCGGAGGTTCAAA
GGCTTTCATATCAATATTGATGATTTTCCTAAACAGGTAGCATTACAGCTGAATGATACACAACCTTCACTTGCGATACCTGAGTTAATGCGGATGTTGGTGGATGAGGAAAATTTGGAATGGAGCAGAGCATGGGAAATTGTAAAGAAAGTATTTTCCTTCACAAATCACACTGTTCTTCCTGAAGCTTTGGAGAAAAT
ACCAGTTGAGCTGTTAGGAAGCCTTCTGCCACGACATTTACAGATCATATATGATATAAATTTTTTCTTCTTAGAGGATCTGAGAAAACGCATGAGATCAGACTATGCTCGTCTTGCTCGAATGTCAATCATTGAAGAAGGCACTACGAAGTGTGTCCGCATGGCAATGCTATCTATTGTAGCCTGCAACAATGTGATTG
GTGTGTCCCAAGTCCACTCAGAAATACTTCGAACAACTGTTTTTGCGGACTTCTATGACATTTGGCCTCACAAGTTTCAATCTAAAACAAATGGTGTCAGTCAGCGACGATGGCTGGCAGCAAGTAATCCTGGTTTACGGGATGTTATCACAAAGTGGCTTGGTACAGAGGCATGGATTAAAGACTTGGACCTTTTATCA
GGCTTACGCGACCATGCAAACAATCCACAACTGCAAAATGAATGGAGACAGGTTCATCGAATAAACAAGAGTAGACTAGCTCAATATATAGAAGGAATAAGTGGCTTGAAGGTTAGCATTGATGCAATGTTCGATGTGCAAGTCAAGCGTATCCATGAGTACAAAAGACAATATCTCAATGTATTGAGCATTATCCACCG
GTATGACTGTATAAAGAATATGACCAGTGACGAGAGGAAGAAAGTTGTGCCACGGGTATGTCTTATTGGAGGAAAGGCAGCCCCAGGATACGAGATTGCAAAAAAAATAATAAAACTCATTCATGCAGTTGGTGGAAAGATTAACAATGATCCAGACATTGGGAACCTTCTGAAATTGGTATTTGTTCCAGATTACAATG
TGTCTGTAGCTGAACTGATAATACCTGCAAGTGATGTATCTCAACACATCAGCACGGCTGGACATGAAGCATCAGGAACAAGCAGCATGAAATTTCTAATGAATGGCTGTCTTATTCTTGGGACCCTGGATGGAGCAGCTGTTGAAATAGCAGAAGAAATAGGAGAGCAGAATATGGATGATCCGGGATGGCTATTTTGG
CTTCAAAGAGTATTTTAAATCATTATGTGACACAGTTGATGGTGAAGGTGGAGATTTCTATCTGCTGGGAAATGACTTTGCAAGTTATTTGGAAGCGCAGGCAGTAGTAGACAGGACATTTGTTGACAAGGAAAAATGGACACACATGAGTATTCTTGGCACTGCTGGTTCAGGGAAATTCAGCAGCGACCGAGCAATTA
GAGAATATGCTGAACAGGCTTGGGGTATTAAGCCTTGCAAGCGGCCAAGTTAGGAAAAATTGGAGTAGATGTCTCTCTCGTATGTTTTAAAGGTCAAATTAGACACCATACAAAGAATCTGATGTTTAACTGTTTAACCTGCCTAAGCATGTAAGACAGTTACTTTCCCAGTTTTGATAATCTTTATACATACTTGATT
Intron 5 GTTTGAGACC ... GTCATTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 5.22 | 94.9 | 42.4 | 4.5 |
| A2 | 13.21 | 89.4 | 29.6 | 14.3 |
| A3 | 9.47 | 72 | 29.1 | 7 |
| A4 | 13.77 | 53.3 | 14.1 | 9 |
| A5 | 6.84 | 33.1 | 11.6 | 2 |
| A6 | 7.06 | 96.4 | 21.9 | 7 |
| A7 | 10.16 | 136.6 | 33.9 | 15 |
| A8 | 9.02 | 141.8 | 32.3 | 14 |
| A9 | 10.37 | 113.3 | 27.4 | 13.5 |
| A10 | 9.18 | 77.8 | 20 | 7.5 |
>TRINITY_DN123103_c1_g1_i9 from sample A2 / Example spliced isoformGTAAATTTTACGCGTGGCAACGAAGAAATGCCGAAATTGGTATTGGTATCGAAATATAATTAAAGAAAAAAAAAATCCAACTTCCATCGTAATATGTAAATTGCCATGAGCATATTCGAATTCCAAAAGTAGAGTTCTGAGTAGAAGAGTGTTTCTTATTTGGCTCTCGGCTTTGCACAGAATGTTGAGTTCAGCGAAGG
CCAGCGCGCTCAAGCCCCCTCCTAGTTTTCACAGCTCCATATTCAGAGTAGAGGGCTCGCAACCTCTTGCTCACTTGGCGGCCTTCAAAGGCTTGTTCTTCAACCCTTCCAACTATGGCGGATCCACGAGATTATCAGTATCATGCAGCACTCTCAAGAACATATTTGGCGGAGCCGGTGGCTCCAAACCGGCAAAGACG
GAGAAGAAACCCCGTAAAGCCTCTCTTCCACTGCCTGCAACCGTAACCATCGACAACGAATCTTCGGGCGAAAACACGATCCTCATTATCACGGCAGAGAACAGAACGGCTATGCTTCAGATAATCACCAGGGTTCTCAGAGCCATGGGGGTTCAAATTTCGAAGGCGAATGTAAATTTGGACAAAGGGTCCCTTGTCGA
GAAAGTTTTCGTGACCGATTCTAAGGGCAGTAAAATAAATGATCCACAGAGCTTGGAAAATATTCAGCAAGCTCTCAGGGAAGCCTTGAATGAACCCATCAGGGTGTTGGATCCCAAGACGAGAGGGTTAGTTATAAAGCCGGATCTTGATTTCGAAAGTTCTGATCAAGTCAAGACCAGGGCGGAGGTGCTGTTCAATT
TGATGGACCAGTATTTGAAAAATGATGTCGTAAGCATTCAGAAGGATGTCTTGAACCATGTCGAGTATACAGTTGCGAGCTCGCGGTTCGATTTTAGCGACTTTGAAGCGTACCAGGCCACAGCACATAGTGTACGGGACCGTTTGATTGAAAGTTGGAATGACACTCACCAGTATTTCAGGGAAAAAGATCCAAAGCGG
TTGTTTTTCCTTTCCCTTGAGTTTCTTATGGGACGGTCGTTATCAAACAGCATTTACAATCTTGGCATAAAGGACCAATATTCAGATGCTTTGAAGCAACTTGGCTTTGACTTGGAAACATTGGTGGAGCAGGAAGTAGATGCAGCTCTTGGGAATGGTGGGCTCGCTCGACTCTCGGCATGTCTCATGGACTCACTTGC
AACTCTGGACTTACCGGCCTGGGGATATGGATTGCGTTATCAGTATGGGTTGTTTAGGCAGGTGATAATTGATGGGTTTCAGCGTGAAAAACCAGATTATTGGCTGAATTTTGGTAATCCTTGGGAGATTGAGCGTGCTCATATCACCTATCCAGTAAAGTTTTATGGTAAAGTGGAAGAGGAAGTTCGCAATGGAAAAA
GACAAAAAATATGGATTCCAGGAGAGATGGTAGAAGCTGTTGCATATGATAACCCCATTCCAGGATATGGCACTGGAAATACAATCAACCTTCGGCTTTGGGCAGCCAAACCTAGTGGTGAATCTGATCTGGAATCATTTAATACAGGAGACTATATCAATGCTATAATCAACAAACAACGAGCTGAAACTATAAGCAGT
GTTCTACTCCCAGATGACCGATCTTATCAGGGTAAGGAACTCCATCTGAAGCAGCAATACTTCTTTGTGTCAGCTTCTTTACAGGACATTATGCGGAGGTTCAAAGGCTTTCATATCAATATTGATGATTTTCCTAAACAGGTAGCATTACAGCTGAATGATACACAACCTTCACTTGCGATACCTGAGTTAATGCGGAT
GTTGGTGGATGAGGAAAATTTGGAATGGAGCAGAGCATGGGAAATTGTAAAGAAAGTATTTTCCTTCACAAATCACACTGTTCTTCCTGAAGCTTTGGAGAAAATACCAGTTGAGCTGTTAGGAAGCCTTCTGCCACGACATTTACAGATCATATATGATATAAATTTTTTCTTCTTAGAGGATCTGAGAAAACGCATGA
GATCAGACTATGCTCGTCTTGCTCGAATGTCAATCATTGAAGAAGGCACTACGAAGTGTGTCCGCATGGCAATGCTATCTATTGTAGCCTGCAACAATGTGATTGGTGTGTCCCAAGTCCACTCAGAAATACTTCGAACAACTGTTTTTGCGGACTTCTATGACATTTGGCCTCACAAGTTTCAATCTAAAACAAATGGT
GTCAGTCAGCGACGATGGCTGGCAGCAAGTAATCCTGGTTTACGGGATGTTATCACAAAGTGGCTTGGTACAGAGGCATGGATTAAAGACTTGGACCTTTTATCAGGCTTACGCGACCATGCAAACAATCCACAACTGCAAAATGAATGGAGACAGGTTCATCGAATAAACAAGAGTAGACTAGCTCAATATATAGAAGG
AATAAGTGGCTTGAAGGTTAGCATTGATGCAATGTTCGATGTGCAAGTCAAGCGTATCCATGAGTACAAAAGACAATATCTCAATGTATTGAGCATTATCCACCGGTATGACTGTATAAAGAATATGACCAGTGACGAGAGGAAGAAAGTTGTGCCACGGGTATGTCTTATTGGAGGAAAGGCAGCCCCAGGATACGAGA
TTGCAAAAAAAATAATAAAACTCATTCATGCAGTTGGTGGAAAGATTAACAATGATCCAGACATTGGGAACCTTCTGAAATTGGTATTTGTTCCAGATTACAATGTGTCTGTAGCTGAACTGATAATACCTGCAAGTGATGTATCTCAACACATCAGCACGGCTGGACATGAAGCATCAGGAACAAGCAGCATGAAATTT
CTAATGAATGGCTGTCTTATTCTTGGGACCCTGGATGGAGCAGCTGTTGAAATAGCAGAAGAAATAGGAGAGCAGAATATGTTCATATTTGGTGCTAAAGTACATGAAGTTCCTAAGCTTCGAGCTCAAAGGAATGATTTTCAACCACCCCGTGAGTTTACCCGTGTCATTAGGATGATCCGGGATGGCTATTTTGGCTT
CAAAGAGTATTTTAAATCATTATGTGACACAGTTGATGGTGAAGGTGGAGATTTCTATCTGCTGGGAAATGACTTTGCAAGTTATTTGGAAGCGCAGGCAGTAGTAGACAGGACATTTGTTGACAAGGAAAAATGGACACACATGAGTATTCTTGGCACTGCTGGTTCAGGGAAATTCAGCAGCGACCGAGCAATTAGAG
AATATGCTGAACAGGCTTGGGGTATTAAGCCTTGCAAGCGGCCAAGTTAGGAAAAATTGGAGTAGATGTCTCTCTCGTATGTTTTAAAGGTCAAATTAGACACCATACAAAGAATCTGATGTTTAACTGTTTAACCTGCCTAAGCATGTAAGACAGTTACTTTCCCAGTTTTGATAATCTTTATACATACTTGATTGTAA
ACTCGTGATCATTTGGATCATTAGGCTATTTCAACAATGAATATTTATTTTTCGATTTTCCATGGCATTTTTTTGTTTGCCTGCAGCATCATGTGTACACCTAAGAGGATATGGTTGTGGCTCACATTAAAACCCAACATCTTGTCTTGTCTTAAGGGTCTCAAATGTATAGCTTAGTGAAGAGGAGTGAGCTAAAGTTG
AACCGTGCAGTCATGCAAGAGGATGCCTCATCTAGCTGTAATTTAATTTAGAGCATATATTTTCACTAGTGTGTACTCTGTTTTCTTTGGATTTTTT
>TRINITY_DN123103_c1_g1_i7 from sample A2 / Example unspliced isoform:GTAAATTTTACGCGTGGCAACGAAGAAATGCCGAAATTGGTATTGGTATCGAAATATAATTAAAGAAAAAAAAAATCCAACTTCCATCGTAATATGTAAATTGCCATGAGCATATTCGAATTCCAAAAGTAGAGTTCTGAGTAGAAGAGTGTTTCTTATTTGGCTCTCGGCTTTGCACAGAATGTTGAGTTCAGCGAAGG
CCAGCGCGCTCAAGCCCCCTCCTAGTTTTCACAGCTCCATATTCAGAGTAGAGGGCTCGCAACCTCTTGCTCACTTGGCGGCCTTCAAAGGCTTGTTCTTCAACCCTTCCAACTATGGCGGATCCACGAGATTATCAGTATCATGCAGCACTCTCAAGAACATATTTGGCGGAGCCGGTGGCTCCAAACCGGCAAAGACG
GAGAAGAAACCCCGTAAAGCCTCTCTTCCACTGCCTGCAACCGTAACCATCGACAACGAATCTTCGGGCGAAAACACGATCCTCATTATCACGGCAGAGAACAGAACGGCTATGCTTCAGATAATCACCAGGGTTCTCAGAGCCATGGGGGTTCAAATTTCGAAGGCGAATGTAAATTTGGACAAAGGGTCCCTTGTCGA
GAAAGTTTTCGTGACCGATTCTAAGGGCAGTAAAATAAATGATCCACAGAGCTTGGAAAATATTCAGCAAGCTCTCAGGGAAGCCTTGAATGAACCCATCAGGGTGTTGGATCCCAAGACGAGAGGGTTAGTTATAAAGCCGGATCTTGATTTCGAAAGTTCTGATCAAGTCAAGACCAGGGCGGAGGTGCTGTTCAATT
TGATGGACCAGTATTTGAAAAATGATGTCGTAAGCATTCAGAAGGATGTCTTGAACCATGTCGAGTATACAGTTGCGAGCTCGCGGTTCGATTTTAGCGACTTTGAAGCGTACCAGGCCACAGCACATAGTGTACGGGACCGTTTGATTGAAAGTTGGAATGACACTCACCAGTATTTCAGGGAAAAAGATCCAAAGCGG
TTGTTTTTCCTTTCCCTTGAGTTTCTTATGGGACGGTCGTTATCAAACAGCATTTACAATCTTGGCATAAAGGACCAATATTCAGATGCTTTGAAGCAACTTGGCTTTGACTTGGAAACATTGGTGGAGCAGGAAGTAGATGCAGCTCTTGGGAATGGTGGGCTCGCTCGACTCTCGGCATGTCTCATGGACTCACTTGC
AACTCTGGACTTACCGGCCTGGGGATATGGATTGCGTTATCAGTATGGGTTGTTTAGGCAGGTGATAATTGATGGGTTTCAGCGTGAAAAACCAGATTATTGGCTGAATTTTGGTAATCCTTGGGAGATTGAGCGTGCTCATATCACCTATCCAGTAAAGTTTTATGGTAAAGTGGAAGAGGAAGTTCGCAATGGAAAAA
GACAAAAAATATGGATTCCAGGAGAGATGGTAGAAGCTGTTGCATATGATAACCCCATTCCAGGATATGGCACTGGAAATACAATCAACCTTCGGCTTTGGGCAGCCAAACCTAGTGGTGAATCTGATCTGGAATCATTTAATACAGGAGACTATATCAATGCTATAATCAACAAACAACGAGCTGAAACTATAAGCAGT
GTTCTACTCCCAGATGACCGATCTTATCAGGGTAAGGAACTCCATCTGAAGCAGCAATACTTCTTTGTGTCAGCTTCTTTACAGGACATTATGCGGAGGTTCAAAGGCTTTCATATCAATATTGATGATTTTCCTAAACAGGTAGCATTACAGCTGAATGATACACAACCTTCACTTGCGATACCTGAGTTAATGCGGAT
GTTGGTGGATGAGGAAAATTTGGAATGGAGCAGAGCATGGGAAATTGTAAAGAAAGTATTTTCCTTCACAAATCACACTGTTCTTCCTGAAGCTTTGGAGAAAATACCAGTTGAGCTGTTAGGAAGCCTTCTGCCACGACATTTACAGATCATATATGATATAAATTTTTTCTTCTTAGAGGATCTGAGAAAACGCATGA
GATCAGACTATGCTCGTCTTGCTCGAATGTCAATCATTGAAGAAGGCACTACGAAGTGTGTCCGCATGGCAATGCTATCTATTGTAGCCTGCAACAATGTGATTGGTGTGTCCCAAGTCCACTCAGAAATACTTCGAACAACTGTTTTTGCGGACTTCTATGACATTTGGCCTCACAAGTTTCAATCTAAAACAAATGGT
GTCAGTCAGCGACGATGGCTGGCAGCAAGTAATCCTGGTTTACGGGATGTTATCACAAAGTGGCTTGGTACAGAGGCATGGATTAAAGACTTGGACCTTTTATCAGGCTTACGCGACCATGCAAACAATCCACAACTGCAAAATGAATGGAGACAGGTTCATCGAATAAACAAGAGTAGACTAGCTCAATATATAGAAGG
AATAAGTGGCTTGAAGGTTAGCATTGATGCAATGTTCGATGTGCAAGTCAAGCGTATCCATGAGTACAAAAGACAATATCTCAATGTATTGAGCATTATCCACCGGTATGACTGTATAAAGAATATGACCAGTGACGAGAGGAAGAAAGTTGTGCCACGGGTATGTCTTATTGGAGGAAAGGCAGCCCCAGGATACGAGA
TTGCAAAAAAAATAATAAAACTCATTCATGCAGTTGGTGGAAAGATTAACAATGATCCAGACATTGGGAACCTTCTGAAATTGGTATTTGTTCCAGATTACAATGTGTCTGTAGCTGAACTGATAATACCTGCAAGTGATGTATCTCAACACATCAGgtttgagaccacttctaactcatttttcctcaaggaaaaataa
ttatttataagtgtgagctgaatgttgccctacggatttgatatctatatgtactcgcaaatactatgcatttaagagcctgaaatacatttaagggcctaatgcgcatgcttagttcacatgaaatatgcatcactaatgcaagttaatggagtataatcaaatagtggtaaaggccacaaagtacatagtatgttaag
taaagaatgcattttctgtgtcttttccagtatgatcattaatgcatgtgtcacaaaacaatagatataattatagttttaagaaggctccttggcaaccattgaggcaattgatgtcattgtagCACGGCTGGACATGAAGCATC
Intron 6 GTTTGATTTT ... CATGTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.73 | 85 | 42 | 37 |
| A2 | 28.83 | 58 | 25 | 22 |
| A3 | 28.77 | 52 | 15 | 27 |
| A4 | 20.93 | 51 | 17 | 10 |
| A5 | 20 | 28 | 5 | 9 |
| A6 | 24.14 | 11 | 2 | 5 |
| A7 | 11.45 | 58 | 5 | 10 |
| A8 | 25 | 18 | 8 | 4 |
| A9 | 18.28 | 38 | 8 | 9 |
| A10 | 14.56 | 44 | 7 | 8 |
>TRINITY_DN123103_c1_g1_i11 from sample A2 / Example spliced isoformGTAAATTTTACGCGTGGCAACGAAGAAATGCCGAAATTGGTATTGGTATCGAAATATAATTAAAGAAAAAAAAAATCCAACTTCCATCGTAATATGTAAATTGCCATGAGCATATTCGAATTCCAAAAGTAGAGTTCTGAGTAGAAGAGTGTTTCTTATTTGGCTCTCGGCTTTGCACAGAATGTTGAGTTCAGCGAAGG
CCAGCGCGCTCAAGCCCCCTCCTAGTTTTCACAGCTCCATATTCAGAGTAGAGGGCTCGCAACCTCTTGCTCACTTGGCGGCCTTCAAAGGCTTGTTCTTCAACCCTTCCAACTATGGCGGATCCACGAGATTATCAGTATCATGCAGCACTCTCAAGAACATATTTGGCGGAGCCGGTGGCTCCAAACCGGCAAAGACG
GAGAAGAAACCCCGTAAAGCCTCTCTTCCACTGCCTGCAACCGTAACCATCGACAACGAATCTTCGGGCGAAAACACGATCCTCATTATCACGGCAGAGAACAGAACGGCTATGCTTCAGATAATCACCAGGGTTCTCAGAGCCATGGGGGTTCAAATTTCGAAGGCGAATGTAAATTTGGACAAAGGGTCCCTTGTCGA
GAAAGTTTTCGTGACCGATTCTAAGGGCAGTAAAATAAATGATCCACAGAGCTTGGAAAATATTCAGCAAGCTCTCAGGGAAGCCTTGAATGAACCCATCAGGGTGTTGGATCCCAAGACGAGAGGGTTAGTTATAAAGCCGGATCTTGATTTCGAAAGTTCTGATCAAGTCAAGACCAGGGCGGAGGTGCTGTTCAATT
TGATGGACCAGTATTTGAAAAATGATGTCGTAAGCATTCAGAAGGATGTCTTGAACCATGTCGAGTATACAGTTGCGAGCTCGCGGTTCGATTTTAGCGACTTTGAAGCGTACCAGGCCACAGCACATAGTGTACGGGACCGTTTGATTGAAAGTTGGAATGACACTCACCAGTATTTCAGGGAAAAAGATCCAAAGCGG
TTGTTTTTCCTTTCCCTTGAGTTTCTTATGGGACGGTCGTTATCAAACAGCATTTACAATCTTGGCATAAAGGACCAATATTCAGATGCTTTGAAGCAACTTGGCTTTGACTTGGAAACATTGGTGGAGCAGGAAGTAGATGCAGCTCTTGGGAATGGTGGGCTCGCTCGACTCTCGGCATGTCTCATGGACTCACTTGC
AACTCTGGACTTACCGGCCTGGGGATATGGATTGCGTTATCAGTATGGGTTGTTTAGGCAGGTGATAATTGATGGGTTTCAGCGTGAAAAACCAGATTATTGGCTGAATTTTGGTAATCCTTGGGAGATTGAGCGTGCTCATATCACCTATCCAGTAAAGTTTTATGGTAAAGTGGAAGAGGAAGTTCGCAATGGAAAAA
GACAAAAAATATGGATTCCAGGAGAGATGGTAGAAGCTGTTGCATATGATAACCCCATTCCAGGATATGGCACTGGAAATACAATCAACCTTCGGCTTTGGGCAGCCAAACCTAGTGGTGAATCTGATCTGGAATCATTTAATACAGGAGACTATATCAATGCTATAATCAACAAACAACGAGCTGAAACTATAAGCAGT
GTTCTACTCCCAGATGACCGATCTTATCAGGGTAAGGAACTCCATCTGAAGCAGCAATACTTCTTTGTGTCAGCTTCTTTACAGGACATTATGCGGAGGTTCAAAGGCTTTCATATCAATATTGATGATTTTCCTAAACAGATCATATATGATATAAATTTTTTCTTCTTAGAGGATCTGAGAAAACGCATGAGATCAGA
CTATGCTCGTCTTGCTCGAATGTCAATCATTGAAGAAGGCACTACGAAGTGTGTCCGCATGGCAATGCTATCTATTGTAGCCTGCAACAATGTGATTGGTGTGTCCCAAGTCCACTCAGAAATACTTCGAACAACTGTTTTTGCGGACTTCTATGACATTTGGCCTCACAAGTTTCAATCTAAAACAAATGGTGTCAGTC
AGCGACGATGGCTGGCAGCAAGTAATCCTGGTTTACGGGATGTTATCACAAAGTGGCTTGGTACAGAGGCATGGATTAAAGACTTGGACCTTTTATCAGGCTTACGCGACCATGCAAACAATCCACAACTGCAAAATGAATGGAGACAGGTTCATCGAATAAACAAGAGTAGACTAGCTCAATATATAGAAGGAATAAGT
GGCTTGAAGGTTAGCATTGATGCAATGTTCGATGTGCAAGTCAAGCGTATCCATGAGTACAAAAGACAATATCTCAATGTATTGAGCATTATCCACCGGTATGACTGTATAAAGGTATGACTGTATGGCATCTTCCTACAAACTTGAAAATTATTCAAGTGAAATATGAGGTACAAAATTAGAGGAGGCAATGCCTCAAA
GGTGTGTAAGATGAATCTGATAATTATAC
>TRINITY_DN123103_c1_g1_i3 from sample A2 / Example unspliced isoform:GTAAATTTTACGCGTGGCAACGAAGAAATGCCGAAATTGGTATTGGTATCGAAATATAATTAAAGAAAAAAAAAATCCAACTTCCATCGTAATATGTAAATTGCCATGAGCATATTCGAATTCCAAAAGTAGAGTTCTGAGTAGAAGAGTGTTTCTTATTTGGCTCTCGGCTTTGCACAGAATGTTGAGTTCAGCGAAGG
CCAGCGCGCTCAAGCCCCCTCCTAGTTTTCACAGCTCCATATTCAGAGTAGAGGGCTCGCAACCTCTTGCTCACTTGGCGGCCTTCAAAGGCTTGTTCTTCAACCCTTCCAACTATGGCGGATCCACGAGATTATCAGTATCATGCAGCACTCTCAAGAACATATTTGGCGGAGCCGGTGGCTCCAAACCGGCAAAGACG
GAGAAGAAACCCCGTAAAGCCTCTCTTCCACTGCCTGCAACCGTAACCATCGACAACGAATCTTCGGGCGAAAACACGATCCTCATTATCACGGCAGAGAACAGAACGGCTATGCTTCAGATAATCACCAGGGTTCTCAGAGCCATGGGGGTTCAAATTTCGAAGGCGAATGTAAATTTGGACAAAGGGTCCCTTGTCGA
GAAAGTTTTCGTGACCGATTCTAAGGGCAGTAAAATAAATGATCCACAGAGCTTGGAAAATATTCAGCAAGCTCTCAGGGAAGCCTTGAATGAACCCATCAGGGTGTTGGATCCCAAGACGAGAGGGTTAGTTATAAAGCCGGATCTTGATTTCGAAAGTTCTGATCAAGTCAAGACCAGGGCGGAGGTGCTGTTCAATT
TGATGGACCAGTATTTGAAAAATGATGTCGTAAGCATTCAGAAGGATGTCTTGAACCATGTCGAGTATACAGTTGCGAGCTCGCGGTTCGATTTTAGCGACTTTGAAGCGTACCAGGCCACAGCACATAGTGTACGGGACCGTTTGATTGAAAGTTGGAATGACACTCACCAGTATTTCAGGGAAAAAGATCCAAAGCGG
TTGTTTTTCCTTTCCCTTGAGTTTCTTATGGGACGGTCGTTATCAAACAGCATTTACAATCTTGGCATAAAGGACCAATATTCAGATGCTTTGAAGCAACTTGGCTTTGACTTGGAAACATTGGTGGAGCAGGAAGTAGATGCAGCTCTTGGGAATGGTGGGCTCGCTCGACTCTCGGCATGTCTCATGGACTCACTTGC
AACTCTGGACTTACCGGCCTGGGGgtttgatttttttctcttttcttttcatgtttcaataacctagtttcactgaatgcatatctgctttggtgtagagagaaagtctggaatggggttggttgtatttctttttgctataaccatatcggtttcaggtttttttctcacaattgaaattggaattatatcaatgtcca
caagtgaccaaaacaggtcaattgggctcaagagtacaacatgcactaacatatataaagggagtgggtgaggcatatcccagcaaagacaacagtaatagagaagttaactttaaatctaaattaaataagtaacagtaaagcatagctagcaaaagggatcaagcacagcaaataagctatcagcaggtctggtttac
gtgcattttgttctgctgcaaattttttaatagtgtcattttcatgtcacagATATGGATTGCGTTATCAGTATGGGTTGTTTAGGCAGGTGATAATTGATGGGTTTCAGCGTGAAAAACCAGATTATTGGCTGAATTTTGGTAATCCTTGGGAGATTGAGCGTGCTCATATCACCTATCCAGTAAAGGTTTGTTGTGAA
AAGATCACTCTTTGCCTCGGTATGTGTTTCACTCACATACACACTGCAAGTCTTGTTAATCCTCAGTATGTGTCTGCTATTAATCCTCTATAAAATATTTCTAGTCCAACC