sp|Q66GS2|B3GTC_ARATH ----> Probable beta-1,3-galactosyltransferase 12
Intron 1 GTCGACGTTT ... CAACATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.03 | 15 | 13 | 36 |
| A2 | 55.56 | 6 | 7 | 8 |
| A3 | 54.84 | 14 | 6 | 28 |
| A4 | 58.49 | 11 | 12 | 19 |
| A5 | 52.38 | 5 | 0 | 11 |
| A6 | 54.84 | 21 | 11 | 40 |
| A7 | 58.42 | 21 | 12 | 47 |
| A8 | 54.55 | 20 | 7 | 41 |
| A9 | 58.73 | 13 | 12 | 25 |
| A10 | 54.13 | 25 | 24 | 35 |
>TRINITY_DN43750_c1_g1_i2 from sample A10 / Example spliced isoformCTGGTCTTGTAAATTTTTTGAAACTCCTAACAACCAATACTGTCGGAGCTTAAAGCAATGAATGAGAACTCCGCATCTGAAACACACACCTTTCTACTCTCCACGCTTAAATGTGAATCGATCTTTGCACGGCGGATAAATTCGCGGTCTCGGATAATAATTAAGGGATCGCTAAAGCCATGCTTTTCATGCGGGGTCGT
ACCCGGGAGGTGTTATAAAGCGGGAGATGTGCCAAATGATTTCAGTGCTTCTGCCATTCAAAAGAATTCCATGCAGAGTAGACCGAAGGTCTTAGGGTTTGTCGGAATTCAAACTGGATTTGGATCTGCAGAGAGGCGTAAAGCTTTAAGGGAAACGTGGCTGCCGTCTGATCGCCATGGACTGTTGAGTTTGGAACAAG
CAACAGGTTTGGCTTTCAGATTTGTAATTGGACGAAGCAAGGATGGAGACAAAATGGCAGAAATTGAGAAAGAGATGGACAAATACGGAGATATTTTGCGCATAGATATTGAAGAGGATTACAATAAATTGCCATACAAAACGTTGGCTTTTTTCAAAGCTGCATTTCAACTCTTTGATGCTGATTTTTATGTTAAAGCT
GATGATGACATTTATTTGCGACCAG
>TRINITY_DN43750_c1_g1_i6 from sample A10 / Example unspliced isoform:CTGGTCTTGTAAATTTTTTGAAACTCCTAACAACCAATACTGTCGGAGCTTAAAGCAATGAATGAGAACTCCGCATCTGAAACACACACCTTTCTACTCTCCACGCTTAAATGTGAATCGATCTTTGCACGGCGGATAAATTCGCGGTCTCGGATAATAATTAAGGGATCGCTAAAGCCATGCTTTTCATGCGGGGTCGT
ACCCGGGAGgtcgacgtttcgaatccctacgtaacatttcattaatcatcgtgtttgcattcattaatgagtttttatcatgcaaagacttatttttccggtcctaaagttgtttacccgatccgaaagatcttgcaatcgatttttgtcttctttagctgccttttcattgcgaaatccactttgacttctaaatttgc
gatgcagtcacccaaatctaggttgacaactgacggtttcttcaaaattcctatttaaattcttcaaatttggattaaattccgtaaaattactttaaaagtccagttctaactgcacaggcctctgaaattccaaatctgaaccgtgaaattctttaaatttctaattctagctcatagttgcatgcatcaagtgaaag
ttttcgatattaaaccctgatatcgaaaataaagccattctctttaaatcgaccctcataaactcgaaatctgagtcggtgaagttccgttcaaatttccgtgttaacagaaaattctccatattatgccctgtttgtccacttcaaggtcaaatttatcattattttagtctggaaccaaaataagttatatatatttt
cgagcaattaaggcaattattcatcattagcgtgagttataatgccatctcctacgcttaggaggaagcttttactgacgcgccagtcatgggcttcttacagtcggaggaccctctttgctttctgttgttttctgtgtggtaccgtaggtactattttatccatctgtattatgcgggtgccgatttcaacatacagG
TGTTATAAAGCGGGAGATGTGCCAAATGATTTCAGTGCTTCTGCCATTCAAAAGAATTCCATGCAGAGTAGACCGAAGGTCTTAGGGTTTGTCGGAATTCAAACTGGATTTGGATCTGCAGAGAGGCGTAAAGCTTTAAGGGAAACGTGGCTGCCGTCTGATCGCCATGGACTGTTGAGTTTGGAACAAGCAACAGGTTT
GGCTTTCAGATTTGTAATTGGACGAAGCAAGGATGGAGACAAAATGGCAGAAATTGAGAAAGAGATGGACAAATACGGAGATATTTTGCGCATAGATATTGAAGAGGATTACAATAAATTGCCATACAAAACGTTGGCTTTTTTTCAAAGCTGCATTTCAACTCTTTGATGCTGATTTTTATGTTAAAGCTGATGATGAC
ATTTATTTGCGACCAG
Intron 2 GTAAAATTGA ... TAATAATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.13 | 23 | 9 | 0 |
| A2 | 23.4 | 36 | 11 | 1 |
| A3 | 35.71 | 27 | 15 | 0 |
| A4 | 24.39 | 31 | 10 | 1 |
| A5 | 42.86 | 12 | 9 | 0 |
| A6 | 31.67 | 123 | 57 | 1 |
| A7 | 25.2 | 95 | 32 | 2 |
| A8 | 30.84 | 74 | 33 | 0 |
| A9 | 23.68 | 58 | 18 | 1 |
| A10 | 29.52 | 74 | 31 | 1 |
>TRINITY_DN43450_c0_g1_i1 from sample A7 / Example spliced isoformGAATTATATTTCCTTATTTTCTTTCTCTATAAAATATCATTCCATCTTAATGATTTTCTATTTTTACCTGGTCTTGTAAATTTTTTGAAACTCCTTACAACCAATACTGTGTCGGAGCTTAAAGCAATGAATGAGAACTCCGCATCTGAAACACACACCTTTCTACTCTCCACGCTTAAATGTGAATCGATCTGTGCACG
GCGGATAAATTCGCGGTCTCGGATAATAATTAAGGGATCGCTAAAGCCATGCTTTTCATGCGGGGTCGTACCCGGGAGGTCGACGTTTCGAATCCCTACGTAACATTTCATTAATCATCGTGTTTGCATTCATTAATGAGTTTTTATCATGCAAAGACTTATTTTTCCGGTCCTAAAGTTGTTTACCCGATCCGAAAGAT
CTTGCAATCGATTTTTGTCTTCTTTAGCTGCCTTTTCATTGCGAAATCCACTTTGACTTCTAAATTTGCGATGCAGTCACCCAAATCTAGGTTGACAACTGACGGTTTCTTCAAAATTCCTATTTAAATTCTTCAAATTTGGATTAAATTCCGTAAAATTACTTTAAAAGTCCAGTTCTAACTGCACAGGCCTCTGAAAT
TCCAAATCTGAACCGTGAAATTCTTTAAATTTCTAATTCTAGCTCATAGTTGCATGCATCAAGTGAAAGTTTTCGATATTAAACCCTGATATCGAAAATAAAGCCATTCTCTTTAAATCGACCCTCATAAACTCGAAATCTGAGTCGGTGAAGTTCCGTTCAAATTTCCGTGTTAACAGAAAATTCTCCATATTATGCCC
TGTTTGTCCACTTCAAGGTCAAATTTATCATTATTTTAGTCTGGAACCAAAATAAGTTATGTATTTTCGAGCAATTAAGGCAATTATTCATCATTAGCGTGAGTTATAATGCCATCTCCTACGCTTAGGAGGAAACTTTTACTGACGCGCCAGTCATGGGCTTCTTACAGTCGGAGGACCCTCTTTGCTTTCTGTTGTTT
TCTGTGTGGTACCGTAGGTACTATTTTATCCATCTGTATTATGCGGGTGCCGATTTCAACATACAGGTGTTATAAAGCGGGAGATGTGCCAAATGATTTCAGTGCTTCTGCCATTCAAAAGAATTCCATGCAGAGTAGACCGAAGGTCTTAGGGTTTGTCGGAATTCAAACTGGATTTGGATCTGCAGAGAGGCGTAAAG
CTTTAAGGGAAACGTGGCTGCCGTCTGATCGACATGGACTGTTGAGTTTGGAACAAGCAACAGGTTTGGCTTTCAGATTTGTAATTGGACGAAGCAAGGATGGAGACAAAATGGCAGAAATTGAGAAAGAGATGGACAAATACGGAGATATTTTGCGCATAGATATTGAAGAGGATTACAATAAATTGCCATACAAAACG
TTGGCTTTTTTCAAAGCTGCATTTCAACTCTTTGATGCTGATTTTTATGTTAAAGCTGATGATGACATTTATTTGCGACCAGACCGACTTGCAACACTACTGGCAAAGGAACGCTCTTCTCCTCGAACATACCTAGGATGCATGAAAAAGGGTCCAGTTTTCAGAGACCCTAACTTAAAATGGTATGAACCTTTGGGAGA
TTTGCTTGGGAATGAATACTTCTTGCATGCCTATGGACCAATATATGCTCTTTCTGCAGAAGTCGTGGCAGGTTTATCAGTGCTAAGAAATGACAGTTTTAGGATGTTTAGCAATGAAGACGTGACCATTGGAGCATGGATGCTTGCTATGAATGTCAACCATGAAGATAATCGGCAGCTTTGTTCTCCTGAGTGTACAT
CAACTTCTATTGCTGTATGGGATATCCCAAAGTGCTCAGGCCTTTGTAACCCGGTACAAAAACAGAGGGAGCTCCACAAAAGTTATATTTGTACCAAGAGTCCCACATTACCACCTGATGAATAGTGAAGCTTGCGCTGATTAATGTGCTATCTACTATTGCACACTTCTTATAGCTGCAGAAACTCTGATTTGGTACTT
CTCAAATCTTGACCATTGCTGAAGAGGATAAATTGTTTCAGATTTCAAGGGATCATGCTATTTTCAGCTCGTATAGCAAGTTACCTGTTGCTTGCGGTCCTTCATTAAGTGGCCATATAATTTTCTCACATACATGTGCAGGATATTCTGCAATCTGACATATTGTAAGAACATGTATTGCATCTTGATTATAAGATTTT
GTTGAGATTATTTTGGGCATATTCCACTTGATTGTTACCGTGCGGATATTCCCTGGTAAAGAAAATTTGGAAAGGCTGAGATGTCATTGTTGGTAATGCTCATTATTGCGCTGAAGAGGTGCG
>TRINITY_DN43450_c0_g1_i2 from sample A7 / Example unspliced isoform:GAATTATATTTCCTTATTTTCTTTCTCTATAAAATATCATTCCATCTTAATGATTTTCTATTTTTACCTGGTCTTGTAAATTTTTTGAAACTCCTTACAACCAATACTGTGTCGGAGCTTAAAGCAATGAATGAGAACTCCGCATCTGAAACACACACCTTTCTACTCTCCACGCTTAAATGTGAATCGATCTGTGCACG
GCGGATAAATTCGCGGTCTCGGATAATAATTAAGGGATCGCTAAAGCCATGCTTTTCATGCGGGGTCGTACCCGGGAGGTCGACGTTTCGAATCCCTACGTAACATTTCATTAATCATCGTGTTTGCATTCATTAATGAGTTTTTATCATGCAAAGACTTATTTTTCCGGTCCTAAAGTTGTTTACCCGATCCGAAAGAT
CTTGCAATCGATTTTTGTCTTCTTTAGCTGCCTTTTCATTGCGAAATCCACTTTGACTTCTAAATTTGCGATGCAGTCACCCAAATCTAGGTTGACAACTGACGGTTTCTTCAAAATTCCTATTTAAATTCTTCAAATTTGGATTAAATTCCGTAAAATTACTTTAAAAGTCCAGTTCTAACTGCACAGGCCTCTGAAAT
TCCAAATCTGAACCGTGAAATTCTTTAAATTTCTAATTCTAGCTCATAGTTGCATGCATCAAGTGAAAGTTTTCGATATTAAACCCTGATATCGAAAATAAAGCCATTCTCTTTAAATCGACCCTCATAAACTCGAAATCTGAGTCGGTGAAGTTCCGTTCAAATTTCCGTGTTAACAGAAAATTCTCCATATTATGCCC
TGTTTGTCCACTTCAAGGTCAAATTTATCATTATTTTAGTCTGGAACCAAAATAAGTTATGTATTTTCGAGCAATTAAGGCAATTATTCATCATTAGCGTGAGTTATAATGCCATCTCCTACGCTTAGGAGGAAACTTTTACTGACGCGCCAGTCATGGGCTTCTTACAGTCGGAGGACCCTCTTTGCTTTCTGTTGTTT
TCTGTGTGGTACCGTAGGTACTATTTTATCCATCTGTATTATGCGGGTGCCGATTTCAACATACAGGTGTTATAAAGCGGGAGATGTGCCAAATGATTTCAGTGCTTCTGCCATTCAAAAGAATTCCATGCAGAGTAGACCGAAGGTCTTAGGGTTTGTCGGAATTCAAACTGGATTTGGATCTGCAGAGAGGCGTAAAG
CTTTAAGGGAAACGTGGCTGCCGTCTGATCGACATGGACTGTTGAGTTTGGAACAAGCAACAGGTTTGGCTTTCAGATTTGTAATTGGACGAAGCAAGGATGGAGACAAAATGGCAGAAATTGAGAAAGAGATGGACAAATACGGAGATATTTTGCGCATAGATATTGAAGAGGATTACAATAAATTGCCATACAAAACG
TTGGCTTTTTTCAAAGCTGCATTTCAACTCTTTGATGCTGATTTTTATGTTAAAGCTGATGATGACATTTATTTGCGACCAGgtaaaattgaatcccgaaaccttaacccattcgttttcttgatactcaaaatttggaatgattaaagagttcatttttaatctgcacttgtaactcggttgatatatctatgcacatg
tcttatggtgttttttaataatcagACCGACTTGCAACACTACTGGCAAAGGAACGCTCTTCTCCTCGAACATACCTAGGATGCATGAAAAAGGGTCCAGTTTTCAGAGACCCTAACTTAAAATGGTGACGGCAGACATCTTGTTTCCAATATAATATAAGATAATATGATAATATCTCTAAAGTGCTTATAATATAAAG
TTCTGACCTGTTTACCGTGTCAGTTGATTTTTGAGTTTTTCTTGCAATGTGTTTCTTCAGAAATCTATTTATTTGCTTCAGGATTGTCATGGATGGCTC
Intron 3 GTTGGCTTTT ... TTGCGACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 96 | 1 | 25 | 23 |
| A2 | 94.87 | 2 | 38 | 36 |
| A3 | 93.75 | 2 | 33 | 27 |
| A4 | 90.62 | 3 | 27 | 31 |
| A5 | 80.65 | 3 | 13 | 12 |
| A6 | 90.91 | 14 | 157 | 123 |
| A7 | 91.45 | 10 | 119 | 95 |
| A8 | 88.24 | 11 | 91 | 74 |
| A9 | 92.23 | 6 | 84 | 58.5 |
| A10 | 89.07 | 10 | 89 | 74 |
>TRINITY_DN43750_c1_g1_i4 from sample A10 / Example spliced isoformTACAATAAATTGCCATACAAAACACCGACTTGCAACACTACTGGCAAAGGAACGCTCTTCTCCTCGAACATACCTAGGATGCATGAAAAAGGGTCCAGTTTTCAGAGACCCTAACTTAAAATGGTATGAACCTTTGGGAGATTTGCTTGGGAATGAATACTTCTTGCATGCCTATGGACCAATATATGCTCTTTCTGCAG
AAGTCGTGGCAGGTTTATCAGTGCTAAGAAATGACAGTTTTAGGATGTTTAGCAATGAAGACGTGACCATTGGAGCATGGATGCTTGCTATGAATGTCAACCATGAAGATAATCGGCAGCTTTGTTCTCCTGAGTGTACATCAACTTCTATTGCTGTATGGGATATCCCAAAGTGCTCAGGCCTTTGTAACCCGGCACAA
AAACAGAGGGAGCTCCACAAAAGTTATATTTGTACCAAGAGTCCCACATTACCACCTGATGAATAGTGAAGCTTGCGCTGATTAATGTGCTATCTACTATTGCACACTTCTTATAGCTGCAGAAACTCTGATTTGGTACTTCTCAAATCTTGACCATTGCTGAAGAGGATAAATTGTTTCAGATTTCAAGGGATCATGCT
ATTTTCAGCTCGTATAGCAAGTTACCTGTTGCTTGCGGTCC
>TRINITY_DN43750_c1_g1_i1 from sample A10 / Example unspliced isoform:CTGGTCTTGTAAATTTTTTGAAACTCCTAACAACCAATACTGTCGGAGCTTAAAGCAATGAATGAGAACTCCGCATCTGAAACACACACCTTTCTACTCTCCACGCTTAAATGTGAATCGATCTTTGCACGGCGGATAAATTCGCGGTCTCGGATAATAATTAAGGGATCGCTAAAGCCATGCTTTTCATGCGGGGTCGT
ACCCGGGAGGTCGACGTTTCGAATCCCTACGTAACATTTCATTAATCATCGTGTTTGCATTCATTAATGAGTTTTTATCATGCAAAGACTTATTTTTCCGGTCCTAAAGTTGTTTACCCGATCCGAAAGATCTTGCAATCGACTTTTGTATTCTTTAGCTGCCTTTTCATTGCGAAATCCACTTTGACTTCTAAATTTGC
GATGCAGTCACCCAAATCTAGGTTGACAACTGACGGTTTCTTCAAAATTCCTATTTAAATTCTTCAAATTTGGATTAAATTCCGTAAAATTACTTTAAAAGTCCAGTTCTAACTGCACAGGCCTCTGAAATTCCAAATCTGAACCGTGAAATTCTTTAAATTTCTAATTCTAGCTCATAGTTGCATGCATCAAGTGAAAG
TTTTCGATATTAAACCCTGATATCGAAAATAAAGCCATTCTCTTTAAATCGACCCTCATAAACTCGAAATCTGAGTCGGTGAAGTTCCGTTCAAATTTCCGTGTTAACAGAAAATTCTCCATATTATGCCCTGTTTGTCCACTTCAAGGTCAAATTTATCATTATTTTAGTCTGGAACCAAAATAAGTTATATATTTTCG
AGCAATTAAGGCAATTATTCATCATTAGCGTGAGTTATAATGCCATCTCCTACGCTTAGGAGGAAGCTTTTACTGACGCGCCAGTCATGGGCTTCTTACAGTCGGAGGACCCTCTTTGCTTTCTGTTGTTTTCTGTGTGGTACCGTAGGTACTATTTTATCCATCTGTATTATGCGGGTGCCGATTTCAACATACAGGTG
TTATAAAGCGGGAGATGTGCCAAATGATTTCAGTGCTTCTGCCATTCAAAAGAATTCCATGCAGAGTAGACCGAAGGTCTTAGGGTTTGTCGGAATTCAAACTGGATTTGGATCTGCAGAGAGGCGTAAAGCTTTAAGGGAAACGTGGCTGCCGTCTGATCGCCATGGACTGTTGAGTTTGGAACAAGCAACAGGTTTGG
CTTTCAGATTTGTAATTGGACGAAGCAAGGATGGAGACAAAATGGCAGAAATTGAGAAAGAGATGGACAAATACGGAGATATTTTGCGCATAGATATTGAAGAGGATTACAATAAATTGCCATACAAAACgttggcttttttcaaagctgcatttcaactctttgatgctgatttttatgttaaagctgatgatgacatt
tatttgcgaccagACCGACTTGCAACACTACTGGCAAAGGAACGCTCTTCTCCTCGAACATACCTAGGATGCATGAAAAAGGGTCCAGTTTTCAGAGACCCTAACTTAAAATGGTATGAACCTTTGGGAGATTTGCTTGGGAATGAATACTTCTTGCATGCCTATGGACCAATATATGCTCTTTCTGCAGAAGTCGTGGC
AGGTTTATCAGTGCTAAGAAATGACAGTTTTAGGATGTTTAGCAATGAAGACGTGACCATTGGAGCATGGATGCTTGCTATGAATGTCAACCATGAAGATAATCGGCAGCTTTGTTCTCCTGAGTGTACATCAACTTCTATTGCTGTATGGGATATCCCAAAGTGCTCAGGCCTTTGTAACCCGGCACAAAAACAGAGGG
AGCTCCACAAAAGTTATATTTGTACCAAGAGTCCCACATTACCACCTGATGAATAGTGAAGCTTGCGCTGATTAATGTGCTATCTACTATTGCACACTTCTTATAGCTGCAGAAACTCTGATTTGGTACTTCTCAAATCTTGACCATTGCTGAAGAGGATAAATTGTTTCAGATTTCAAGGGATCATGCTATTTTCAGCT
CGTATAGCAAGTTACCTGTTGCTTGCGGTCCTTCATTAAGTGGCCATATAATTTTCTCACATACATGTGCAGGATATTCTGCAATCTCACATATTGTAAGAACATGTATTGCATCTTGATTATAAGATTTTGTTGAGATTATTTTGGGCATATTCCACTTGATTGTTACCATGGGGATATTCCCTGGTAAAGAAAATTTG
GAAAGGCTGAGATGTCATTGTTGGTAATGCTCATTATTGCGCTGAAGAGGTGC
Intron 4 GTCGACGTTT ... CAACATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.03 | 15 | 13 | 36 |
| A2 | 55.56 | 6 | 7 | 8 |
| A3 | 54.84 | 14 | 6 | 28 |
| A4 | 58.49 | 11 | 12 | 19 |
| A5 | 52.38 | 5 | 0 | 11 |
| A6 | 54.84 | 21 | 11 | 40 |
| A7 | 58.42 | 21 | 12 | 47 |
| A8 | 54.55 | 20 | 7 | 41 |
| A9 | 58.73 | 13 | 12 | 25 |
| A10 | 54.13 | 25 | 24 | 35 |
>TRINITY_DN43750_c1_g1_i2 from sample A10 / Example spliced isoformCTGGTCTTGTAAATTTTTTGAAACTCCTAACAACCAATACTGTCGGAGCTTAAAGCAATGAATGAGAACTCCGCATCTGAAACACACACCTTTCTACTCTCCACGCTTAAATGTGAATCGATCTTTGCACGGCGGATAAATTCGCGGTCTCGGATAATAATTAAGGGATCGCTAAAGCCATGCTTTTCATGCGGGGTCGT
ACCCGGGAGGTGTTATAAAGCGGGAGATGTGCCAAATGATTTCAGTGCTTCTGCCATTCAAAAGAATTCCATGCAGAGTAGACCGAAGGTCTTAGGGTTTGTCGGAATTCAAACTGGATTTGGATCTGCAGAGAGGCGTAAAGCTTTAAGGGAAACGTGGCTGCCGTCTGATCGCCATGGACTGTTGAGTTTGGAACAAG
CAACAGGTTTGGCTTTCAGATTTGTAATTGGACGAAGCAAGGATGGAGACAAAATGGCAGAAATTGAGAAAGAGATGGACAAATACGGAGATATTTTGCGCATAGATATTGAAGAGGATTACAATAAATTGCCATACAAAACGTTGGCTTTTTTCAAAGCTGCATTTCAACTCTTTGATGCTGATTTTTATGTTAAAGCT
GATGATGACATTTATTTGCGACCAG
>TRINITY_DN43750_c1_g1_i1 from sample A10 / Example unspliced isoform:CTGGTCTTGTAAATTTTTTGAAACTCCTAACAACCAATACTGTCGGAGCTTAAAGCAATGAATGAGAACTCCGCATCTGAAACACACACCTTTCTACTCTCCACGCTTAAATGTGAATCGATCTTTGCACGGCGGATAAATTCGCGGTCTCGGATAATAATTAAGGGATCGCTAAAGCCATGCTTTTCATGCGGGGTCGT
ACCCGGGAGgtcgacgtttcgaatccctacgtaacatttcattaatcatcgtgtttgcattcattaatgagtttttatcatgcaaagacttatttttccggtcctaaagttgtttacccgatccgaaagatcttgcaatcgacttttgtattctttagctgccttttcattgcgaaatccactttgacttctaaatttgc
gatgcagtcacccaaatctaggttgacaactgacggtttcttcaaaattcctatttaaattcttcaaatttggattaaattccgtaaaattactttaaaagtccagttctaactgcacaggcctctgaaattccaaatctgaaccgtgaaattctttaaatttctaattctagctcatagttgcatgcatcaagtgaaag
ttttcgatattaaaccctgatatcgaaaataaagccattctctttaaatcgaccctcataaactcgaaatctgagtcggtgaagttccgttcaaatttccgtgttaacagaaaattctccatattatgccctgtttgtccacttcaaggtcaaatttatcattattttagtctggaaccaaaataagttatatattttcg
agcaattaaggcaattattcatcattagcgtgagttataatgccatctcctacgcttaggaggaagcttttactgacgcgccagtcatgggcttcttacagtcggaggaccctctttgctttctgttgttttctgtgtggtaccgtaggtactattttatccatctgtattatgcgggtgccgatttcaacatacagGTG
TTATAAAGCGGGAGATGTGCCAAATGATTTCAGTGCTTCTGCCATTCAAAAGAATTCCATGCAGAGTAGACCGAAGGTCTTAGGGTTTGTCGGAATTCAAACTGGATTTGGATCTGCAGAGAGGCGTAAAGCTTTAAGGGAAACGTGGCTGCCGTCTGATCGCCATGGACTGTTGAGTTTGGAACAAGCAACAGGTTTGG
CTTTCAGATTTGTAATTGGACGAAGCAAGGATGGAGACAAAATGGCAGAAATTGAGAAAGAGATGGACAAATACGGAGATATTTTGCGCATAGATATTGAAGAGGATTACAATAAATTGCCATACAAAACGTTGGCTTTTTTCAAAGCTGCATTTCAACTCTTTGATGCTGATTTTTATGTTAAAGCTGATGATGACATT
TATTTGCGACCAGACCGACTTGCAACACTACTGGCAAAGGAACGCTCTTCTCCTCGAACATACCTAGGATGCATGAAAAAGGGTCCAGTTTTCAGAGACCCTAACTTAAAATGGTATGAACCTTTGGGAGATTTGCTTGGGAATGAATACTTCTTGCATGCCTATGGACCAATATATGCTCTTTCTGCAGAAGTCGTGGC
AGGTTTATCAGTGCTAAGAAATGACAGTTTTAGGATGTTTAGCAATGAAGACGTGACCATTGGAGCATGGATGCTTGCTATGAATGTCAACCATGAAGATAATCGGCAGCTTTGTTCTCCTGAGTGTACATCAACTTCTATTGCTGTATGGGATATCCCAAAGTGCTCAGGCCTTTGTAACCCGGCACAAAAACAGAGGG
AGCTCCACAAAAGTTATATTTGTACCAAGAGTCCCACATTACCACCTGATGAATAGTGAAGCTTGCGCTGATTAATGTGCTATCTACTATTGCACACTTCTTATAGCTGCAGAAACTCTGATTTGGTACTTCTCAAATCTTGACCATTGCTGAAGAGGATAAATTGTTTCAGATTTCAAGGGATCATGCTATTTTCAGCT
CGTATAGCAAGTTACCTGTTGCTTGCGGTCCTTCATTAAGTGGCCATATAATTTTCTCACATACATGTGCAGGATATTCTGCAATCTCACATATTGTAAGAACATGTATTGCATCTTGATTATAAGATTTTGTTGAGATTATTTTGGGCATATTCCACTTGATTGTTACCATGGGGATATTCCCTGGTAAAGAAAATTTG
GAAAGGCTGAGATGTCATTGTTGGTAATGCTCATTATTGCGCTGAAGAGGTGC
Intron 5 GTTGACAACT ... CAACATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75 | 12 | 5 | 36 |
| A2 | 61.54 | 5 | 4 | 8 |
| A3 | 71.79 | 11 | 13 | 28 |
| A4 | 70.37 | 8 | 10 | 19 |
| A5 | 68.75 | 5 | 2 | 11 |
| A6 | 68.97 | 18 | 8 | 40 |
| A7 | 74.6 | 16 | 10 | 47 |
| A8 | 67.21 | 20 | 5 | 41 |
| A9 | 69.44 | 11 | 3 | 25 |
| A10 | 62.5 | 21 | 16 | 35 |
>TRINITY_DN99019_c0_g2_i2 from sample A4 / Example spliced isoformCACTTTGACTTCTAAATTTGCGAGGCAGTCACCCAAATCTAGGTGTTATAAAGCGGGAGATGTGCCAAATGATTTCAGTGCTTCTGCCATTCAAAAGAATTCCATGCAGAGTAGACCGAAGGTCTTAGGGTTTGTCGGAATTCAAACTGGATTTGGATCTGCAGAGAGGCGTAAAGCTTTAAGGGAAACGTGGCTGCCGT
CTGATCGACATGGACTGTTGAGTTTGGAACAAGCAACAGGTTTGGCTTTCAGATTTGTAATTGGACGAAGCAAGGATGGAGACAAAATGGCAGAAATTGAGAAAGAGATGGACAAATACGGAGATATTTTGCGCATAGATATTGAAGAGGATTACAATAAATTGCCATACAAAACGTTGGCTTTTTTCAAAGCTGCATTT
CAACTCTTTGATGCTGATTTTTATGTTAAAGCTGATGATGACATTTATTTGCGACCAGACCGACTTGCAACACTACTGGCAAAGGAACGCTCTTCTCCTCGAACATACCTAGGATGCATGAAAAAGGGTCCAGTTTTCAGAGACCCTAACTTAAAATGGTATGAACCTTTGGGAGATTTGCTTGGGAATGAATACTTCTT
GCATGCCTATGGACCAATATATGCTCTTTCTGCAGAAGTCGTGGCAGGTTTATCAGTGCTAAGAAATGACAGTTTTAGGATGTTTAGCAATGAAGACGTGACCATTGGAGCATGGATGCTTGCTATGAATGTCAACCATGAAGATAATCGGCAGCTTTGTTCTCCTGAGTGTACATCAACTTCTATTGCTGTATGGGATA
TCCCAAAGTGCTCAGGTAAGTTTTTCATGTTCATGGCTTCCAATATT
>TRINITY_DN99019_c0_g2_i5 from sample A4 / Example unspliced isoform:CGGAGCTTAAAGCAATGAATGAGAACTCCGCATCTGAAACACACACCTTTCTACTCTCCACGCTTAAATGTGAATCGATCTGTGCACGGCGGATAAATTCGCGGTCTCGGATAATAATTAAGGGATCGCTAAAGCCATGCTTTTCATGCGGGGTCGTACCCGGGAGGTCGACGTTTCGAATCCCTACGTAACATTTCATT
AATCATCGTGTTTGCATTCATTAATGAGTTTTTATCATGCAAAGACTTATTTTTCCGGTCCTAAAGTTGTTTACCCGATCCGAAAGATCTTGCAATCGATTTTTGTCTTCTTTAGCTGCCTTTTCATTGCGAAATCCACTTTGACTTCTAAATTTGCGATGCAGTCACCCAAATCTAGgttgacaactgacggtttcttc
aaaattcctatttaaattcttcaaatttggattaaattccgtaaaattactttaaaagtccagttctaactgcacaggcctctgaaattccaaatctgaaccgtgaaattctttaaatttctaattctagctcatagttgcatgcatcaagtgaaagttttcgatattaaaccctgatatcgaaaataaagccattctct
ttaaatcgaccctcataaactcgaaatctgagtcggtgaagttccgttcaaatttccgtgttaacagaaaattctccatattatgccctgtttgtccacttcaaggtcaaatttatcattattttagtctggaaccaaaataagttatgtattttcgagcaattaaggcaattattcatcattagcgtgagttataatgc
catctcctacgcttaggaggaagcttttactgacgcgccagtcatgggcttcttacagtcggaggaccctctttgctttctgttgttttctgtgtggtaccgtaggtactattttatccatctgtattatgcgggtgccgatttcaacatacagGTGTTATAAAGCGGGAGATGTGCCAAATGATTTCAGTGCTTCTGCC
ATTCAAAAGAATTCCATGCAGAGTAGACCGAAGGTCTTAGGGTTTGTCGGAATTCAAACTGGATTTGGATCTGCAGAGAGGCGTAAAGCTTTAAGGGAAACGTGGCTGCCGTCTGATCGACATGGACTGTTGAGTTTGGAACAAGCAACAGGTTTGGCTTTCAGATTTGTAATTGGACGAAGCAAGGATGGAGACAAAAT
GGCAGAAATTGAGAAAGAGATGGACAAATACGGAGATATTTTGCGCATAGATATTGAAGAGGATTACAATAAATTGCCATACAAAACGTTGGCTTTTTTCAAAGCTGCATTTCAACTCTTTGATGCTGATTTTTATGTTAAAGCTGATGATGACATTTATTTGCGACCAGACCGACTTGCAACACTACTGGCAAAGGAAC
GCTCTTCTCCTCGAACATACCTAGGATGCATGAAAAAGGGTCCAGTTTTCAGAGACCCTAACTTAAAATGGTATGAACCTTTGGGAGATTTGCTTGGGAATGAATACTTCTTGCATGCCTATGGACCAATATATGCTCTTTCTGCAGAAGTCGTGGCAGGTTTATCAGTGCTAAGAAATGACAGTTTTAGGATGTTTAGC
AATGAAGACGTGACCATTGGAGCATGGATGCTTGCTATGAATGTCAACCATGAAGATAATCGGCAGCTTTGTTCTCCTGAGTGTACATCAACTTCTATTGCTGTATGGGATATCCCAAAGTGCTCAGGTAAGTTTTTCATGTTCATGGCTTCCAATATT
Intron 6 GTAACATTTC ... GACTGTTGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 90 | 3 | 11 | 27 |
| A2 | 80 | 3 | 6 | 12 |
| A3 | 73.33 | 4 | 5 | 11 |
| A4 | 80 | 5 | 10 | 20 |
| A5 | 76.47 | 4 | 2 | 13 |
| A6 | 66.07 | 19 | 11 | 37 |
| A7 | 85.51 | 10 | 12 | 59 |
| A8 | 78.38 | 8 | 9 | 29 |
| A9 | 83.33 | 7 | 10 | 35 |
| A10 | 75.64 | 19 | 23 | 59 |
>TRINITY_DN42315_c0_g2_i1 from sample A8 / Example spliced isoformAATCGATCTTTGCACGGCGGATAAATTCGCGGTCTCGGATAATAATTAAGGGATCGCTAAAGCCATGCTTTTCATGCGGGGTCGTACCCGGGAGGTCGACGTTTCGAATCCCTACTTTGGAACAAGCAACAGGTTTGGCTTTCAGATTTGTAATTGGACGAAGCAAGGATGGAGACAAAATGGCAGAAATTGAGAAAGAG
ATGGACAAATACGGAGATATTTTGCGCATAGATATTGAAGAGGATTACAATAAATTGCCATACAAAACGTTGGCTTTTTTCAAAGCTGCATTTCAACTCTTTGATGCTGATTTTTATGTTAAAGCTGATGATGACATTTATTTGCGACCAGACCGACTTGCAACACTACTGGCAAAGGAACGCTCTTCTCCTCGAACATA
CCTAGGATGCATGAAAAAGGGTCCAGTTTTCAGAGACCCTAACTTAAAATGGTATGAACCTTTGGGAGATTTGCTTGGGAATGAATACTTCTTGCATGCCTATGGACCAATATATGCTCTTTCTGCAGAAGTCGTGGCAGGTTTATCAGTGCTAAGAAATGACAGTTTTAGGATGTTTAGCAATGAAGACGTGACCATTG
GAGCATGGATGCTTGCTATGAATGTCAACCATGAAGATAATCGGCAGCTTTGTTCTCCTGAGTGTACATCAACTTCTATTGCTGTATGGGATATCCCAAAGTGCTCAGGCCTTTGTAACCCGGCACAAAAACAGAGGGAGCTCCACAAAAGTTATATTTGTACCAAGAGTCCCACATTACCACCTGATGAATAGTGAAGC
TTGCGCTGATTAATGTGCTATCTACTATTGCACACTTCTTATAGCTGCAGAAACTCTGATTTGGTACTTCTCAAATCTTGACCATTGCTGAAGAGGATAAATTGTTTCAGATTTCAAGGGATCATGCTATTTTCAGCTCGTATAGCAAGTTACCTGTTGCTTGCGGTCCTTCATTAAGTGGCCATATAATTTTCTCACAT
ACATGTGCAGGATATTCTGCAATCTGACATATTGTAAGAACATGTATTGCATCTTGATTATAAGATTTTGTTGAGATTATTTTGGGCATATTCCACTTGATTGTTACCGTGCGGATATTCCCTGGTAAAGAAAATTTGGAAAGGCTGAGATGTCATTGTTGGTAATGCTCATTATTGCGCTGAAGAGGTGCTTTCTACAG
AAC
>TRINITY_DN42315_c0_g2_i2 from sample A8 / Example unspliced isoform:AATCGATCTTTGCACGGCGGATAAATTCGCGGTCTCGGATAATAATTAAGGGATCGCTAAAGCCATGCTTTTCATGCGGGGTCGTACCCGGGAGGTCGACGTTTCGAATCCCTACgtaacatttcattaatcatcgtgtttgcattcattaatgagtttttatcatgcaaagacttatttttccggtcctaaagttgttt
acccgatccgaaagatcttgcaatcgacttttgtattctttagctgccttttcattgcgaaatccactttgacttctaaatttgcgatgcagtcacccaaatctaggttgacaactgacggtttcttcaaaattcctatttaaattcttcaaatttggattaaattccgtaaaattactttaaaagtccagttctaactg
cacaggcctctgaaattccaaatctgaaccgtgaaattctttaaatttctaattctagctcatagttgcatgcatcaagtgaaagttttcgatattaaaccctgatatcgaaaataaagccattctctttaaatcgaccctcataaactcgaaatctgagtcggtgaagttccgttcaaatttccgtgttaacagaaaat
tctccatattatgccctgtttgtccacttcaaggtcaaatttatcattattttagtctggaaccaaaataagttatgtattttcgagcaattaaggcaattattcatcattagcgtgagttataatgccatctcctacgcttaggaggaaacttttactgacgcgccagtcatgggcttcttacagtcggaggaccctct
ttgctttctgttgttttctgtgtggtaccgtaggtactattttatccatctgtattatgcgggtgccgatttcaacatacaggtgttataaagcgggagatgtgccaaatgatttcagtgcttctgccattcaaaagaattccatgcagagtagaccgaaggtcttagggtttgtcggaattcaaactggatttggatct
gcagagaggcgtaaagctttaagggaaacgtggctgccgtctgatcgacatggactgttgagTTTGGAACAAGCAACAGGTTTGGCTTTCAGATTTGTAATTGGACGAAGCAAGGATGGAGACAAAATGGCAGAAATTGAGAAAGAGATGGACAAATACGGAGATATTTTGCGCATAGATATTGAAGAGGATTACAATAA
ATTGCCATACAAAACGTTGGCTTTTTTCAAAGCTGCATTTCAACTCTTTGATGCTGATTTTTATGTTAAAGCTGATGATGACATTTATTTGCGACCAGACCGACTTGCAACACTACTGGCAAAGGAACGCTCTTCTCCTCGAACATACCTAGGATGCATGAAAAAGGGTCCAGTTTTCAGAGACCCTAACTTAAAATGGT
ATGAACCTTTGGGAGATTTGCTTGGGAATGAATACTTCTTGCATGCCTATGGACCAATATATGCTCTTTCTGCAGAAGTCGTGGCAGGTTTATCAGTGCTAAGAAATGACAGTTTTAGGATGTTTAGCAATGAAGACGTGACCATTGGAGCATGGATGCTTGCTATGAATGTCAACCATGAAGATAATCGGCAGCTTTGT
TCTCCTGAGTGTACATCAACTTCTATTGCTGTATGGGATATCCCAAAGTGCTCAGGCCTTTGTAACCCGGCACAAAAACAGAGGGAGCTCCACAAAAGTTATATTTGTACCAAGAGTCCCACATTACCACCTGATGAATAGTGAAGCTTGCGCTGATTAATGTGCTATCTACTATTGCACACTTCTTATAGCTGCAGAAA
CTCTGATTTGGTACTTCTCAAATCTTGACCATTGCTGAAGAGGATAAATTGTTTCAGATTTCAAGGGATCATGCTATTTTCAGCTCGTATAGCAAGTTACCTGTTGCTTGCGGTCCTTCATTAAGTGGCCATATAATTTTCTCACATACATGTGCAGGATATTCTGCAATCTGACATATTGTAAGAACATGTATTGCATC
TTGATTATAAGATTTTGTTGAGATTATTTTGGGCATATTCCACTTGATTGTTACCGTGCGGATATTCCCTGGTAAAGAAAATTTGGAAAGGCTGAGATGTCATTGTTGGTAATGCTCATTATTGCGCTGAAGAGGTGCTTTCTACAGAAC
Intron 7 GTGAGTTTTT ... ATTTTCATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 11.11 | 25 | 3.3 | 2 |
| A2 | 9.09 | 38 | 4 | 1 |
| A3 | 7.21 | 33 | 2.7 | 0 |
| A4 | 21.35 | 27 | 7.7 | 8 |
| A5 | 0 | 13 | 0 | 0 |
| A6 | 7.87 | 157 | 14 | 0 |
| A7 | 8.76 | 119 | 12 | 0 |
| A8 | 11.72 | 91 | 12.7 | 2 |
| A9 | 11.77 | 84 | 12 | 0 |
| A10 | 8.5 | 89 | 8.7 | 0 |
>TRINITY_DN99019_c0_g2_i2 from sample A4 / Example spliced isoformCACTTTGACTTCTAAATTTGCGAGGCAGTCACCCAAATCTAGGTGTTATAAAGCGGGAGATGTGCCAAATGATTTCAGTGCTTCTGCCATTCAAAAGAATTCCATGCAGAGTAGACCGAAGGTCTTAGGGTTTGTCGGAATTCAAACTGGATTTGGATCTGCAGAGAGGCGTAAAGCTTTAAGGGAAACGTGGCTGCCGT
CTGATCGACATGGACTGTTGAGTTTGGAACAAGCAACAGGTTTGGCTTTCAGATTTGTAATTGGACGAAGCAAGGATGGAGACAAAATGGCAGAAATTGAGAAAGAGATGGACAAATACGGAGATATTTTGCGCATAGATATTGAAGAGGATTACAATAAATTGCCATACAAAACGTTGGCTTTTTTCAAAGCTGCATTT
CAACTCTTTGATGCTGATTTTTATGTTAAAGCTGATGATGACATTTATTTGCGACCAGACCGACTTGCAACACTACTGGCAAAGGAACGCTCTTCTCCTCGAACATACCTAGGATGCATGAAAAAGGGTCCAGTTTTCAGAGACCCTAACTTAAAATGGTATGAACCTTTGGGAGATTTGCTTGGGAATGAATACTTCTT
GCATGCCTATGGACCAATATATGCTCTTTCTGCAGAAGTCGTGGCAGGTTTATCAGTGCTAAGAAATGACAGTTTTAGGATGTTTAGCAATGAAGACGTGACCATTGGAGCATGGATGCTTGCTATGAATGTCAACCATGAAGATAATCGGCAGCTTTGTTCTCCTGAGTGTACATCAACTTCTATTGCTGTATGGGATA
TCCCAAAGTGCTCAGGTAAGTTTTTCATGTTCATGGCTTCCAATATT
>TRINITY_DN99019_c0_g2_i6 from sample A4 / Example unspliced isoform:CTTAGTTTGATATCTTTAATGTAATATGACTTTGAGTTTGACATATTAGTGCTGTCAAGTGAGCTATAATTTTGTGCTTTTCCTTTCTATTTAAAACTAGTGTCCATATACAAAACAGTTTGAAAGTTGTTTTTATAATGGGAAATTGTGTGCATGCTTATAGCAGTTTGGAACAAGCAACAGGTTTGGCTTTCAGATTT
GTAATTGGACGAAGCAAGGATGGAGACAAAATGGCAGAAATTGAGAAAGAGATGGACAAATACGGAGATATTTTGCGCATAGATATTGAAGAGGATTACAATAAATTGCCATACAAAACgtgagtttttcctgctttcttgaaaatttttatgagttttatttttgttttgattttaaaaaccatcactagttcctctta
ttttcatagGTTGGCTTTTTTCAAAGCTGCATTTCAACTCTTTGATGCTGATTTTTATGTTAAAGCTGATGATGACATTTATTTGCGACCAGGTAAAATTGAATCCCGAAACCTTAACCCAT