NA ----> NA
Intron 1 GTAGGAAAAC ... AGTGAACTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 49.26 | 3.5 | 3.6 | 3 |
| A2 | 44.59 | 15.3 | 9.5 | 15 |
| A3 | 36.34 | 19.5 | 9.3 | 13 |
| A4 | 50.63 | 4.8 | 1.8 | 8 |
| A5 | 25.56 | 15.5 | 3.6 | 7 |
| A6 | 18.46 | 35 | 1.9 | 14 |
| A7 | 10.17 | 30.3 | 4.1 | 3 |
| A8 | 16.36 | 23 | 2 | 7 |
| A9 | 12.45 | 37.3 | 3.8 | 7 |
| A10 | 15.18 | 16 | 1.8 | 4 |
>TRINITY_DN123001_c1_g2_i5 from sample A1 / Example spliced isoformCGGTTTGGTTGGGCCCTCCCTCCACACTCACAACATGGGGTTTGTGGATAGATTGATTCAGATTCTGTTGGTTTTTGCAACAAGTTACACGTGTGAGGAAAGGATAGGAACGGTAGGATCTCGTAAGAATTGTGATATGGGTTCTATGAATCTGGTGCTGCCCTCACTTTGTTACCACGCGGTGGTCTCAAAACAGGGCA
TGGTGTTCGTTTTATGACGATGGCTACCTAGATAGATGGATGGATGATCCTACAACTTCTTCTGAAAAGCAAGCACTCCCTGCTCAACCCCCTAGAGAATAGGCTTAGGCAGCAGCTGCTGGTGTTGGTGTTGGTGTTGGTGCTGGTGGATCCTAAGGAGGTGAAAAACAAGAGAAGGATCCCATTTAAGCGGAGCTTGG
ACAAGATTCCTGGTTTCCGTGCAGAGATTTGGTGGCGTTTCTCTTCATGATCAACATCTATAAGTAGTGCAATGTTGACTTGCATTAGTTCTCTCCTTCTTCATGTCTCTCCCTAATTCAAATGTTTGTTGACTGCTGCCGGGGGTGCTATGGTTACATAAATATATATTATACATACATGCTCGTCTGCCTTTTCTTAG
TTCTGATGGCTTGGAGTTATGCATATCCTCTACCCTGATGTCTTCTTCGGTTTATGGATACATCGCTGCTGTTCCTACCAATTCATTTGAAGCTCAGTTTATTCTCCTATCAAACATCAATTAAGGGTCTATAGGTCACAGCTAAGTGCTTCTCCCAGTTCTGTTCGTCAGCAGTTCTGTTGAACAAAGGAAAAGTGGGC
ATAGATAGGCCTGCTCTTCTCAGTTGGTTCCTTTGGAGCTCTGTGTATACGCTTCTATCAAGAAACATCTGTGAGTATCTGCCTGTGGAGCTCTGCGTATATCTTCCTACCAACAAACATCTGTGGGTATCTGCTTGTGGAGCTCTCTGTATGCCCTCCTATCAAATAACATCTGTGCCTATATGCCTATCATCCTGTGG
AGCTCTGTGTATATCCTCCAATCGACAAACATCTGTGGGTATATGCATATCTGCCTGTTTCTTCATCCTAGTTCTGTATTTTGGAGTTCTTTATATGGGGCAATGTACCAGCTCCTAGTTCTATTGTTTTGAACTCGTGGGGTATGTCTTTTCCTTTTATTTCTGTCTATCTGCACTTCTGTGTGAATATCCTGACAGCA
ATTGCAGTCAAAGCGTAGGAATCCTTCTACCCAACAATTGATTGGATGTGTTTTCCCTCTGACTCTCACTCCAAGTTCTTCATATACTAGCATCTCCTGAGCTCTGGTGAGGACCTCACACCTCAGCCGGTCTGTTAGAATTTAGATGGCAATGCTGCTGCTGAGAGCAGGCGGTCTATCCAACAGTCAGAAGGTACCCC
TGTCATCCTTGACATATACAACAAAGGAAGGTAGCAGCATGATACAACAGGACGAGAACCAGCAGCAGCAACACCAGCAGAGGAGCTCCAGATCCAGCAGAAAGTCCAAGAATGGCCAAAAGAAGATCCCTCAGCGTGGTTTGGGTGTTGCCCAGTTGGAAAAACTACGCATGGAAGAGCAGCAGAGGCAGGAGGCAGCC
TGTCTGGCATCTCTACAACGAGCCCATGCCCTTCCCCCACTCACAGGTTCCCTACATTCTCAAGGCACCTCTCTTGTTTTCTCTCATAACTATGCCTCGCAAATAAAGGGCAGGACCCTTCAACAGCACCCTACATTCATGTCCCCAAGAAACACCTGCAAAATGCCAGACTCCATCATTTCTATGGCAAATATCCATTC
CATTAATCTCAAGCAGCAGATTCCAATGGTGGGAGTGAGCAGCAGCAGCAGCAGTCCACAACATCAGTCGCCCAGAGAAGAGAACAGGGCCCTGTCCAGGAATTCATCTCTTGGGAGGAGCAGTGAGCCTGTTGAGTCCTGTGTGACCGATGTGGGTGTGGCCAACCCCGGCATCATTGCACCTGGCTTATGGCCTGTGC
AGAATGGGAATCGAGATGATTTGAATCATTCCCTGAATCAGGAATTGGAGATGAGAAAGATGGATTTGTTTGGATTAAGGTCACAGAGCACCTCCAGTCCTCTGAATGATTTGAGATTCTTCGACCCCTTGATACGATATCCAGCCCCAGCAAGGAAGTTGCCAGTGGTGAGCATATCATCATCTGGCGCTACTATGCAA
TTGGAGCCCCCTTCAAACCAAAGCTATTCTAACACTCCTCCCTGGACTGAGGAAGACAGGATTGCTGGCGTAAAACGTCCCTGGCCTTTCTCTGAAGAAAATCCTGTTAGCCCAATTCAACCAAAGGTTGCATGTCTGAATGTTGGGACTGGGATACATGTGAAACCTGAGGACCTGGCTGATCCTAATCCTGATAGATT
GGAGCTTGCAATACAGGAGCCTGCTGGCATTTTCAGTGGAAGTACTCCTAAGGTCTGCTGTGGAGCCGGACAGGCTGCCGTGAAAGACAGTTGCTCAAGTTCAACCTCGCTGCAGCCTGGTTTTGCATTGAATTGGAAAGCTTCATTTGGGAATGATATCTCATCACGGGAGATTGAAACTCCTGGTGTCACCTTCTTGA
CTCTGGGGCTGTCATGTTCACCTAACGAAGCCTATCATGGGAATGGAAGATGCTGCAAACCTGAACCACATTCTGCGACTCCTGAAAGTAGCGACGAATGCCAATTGCCAAACAAAGTATCAACCCATGCCCAGCAGGTAATCCATTTGTTTTTAATGTGTACATTTTGCAATGAGACTGCATGGTGTATATGGGTTGCA
GGCTGTCGCAAGCCCATCAAGTAGTGGGCTTAACCTGTGACATTGAGAAATTCATTCAGGTCCAGAGTCATTATTTATGCTGTTTTTCTTCATTTGCAAGGAAAATGATGACATTTTTGTGGTATCGGAAATTATGTTTGTCATCAAAGGCTAA
>TRINITY_DN123001_c1_g2_i3 from sample A1 / Example unspliced isoform:GTTGGATGCAATTTTCGTATTGGGATTTATGACTAGGAATATGATTTTACAGGTGAGCATATCATCATCTGGCGCTACTATGCAATTGGAGCCCCCTTCAAACCAAAGCTATTCTAACACTCCTCCCTGGACTGAGGAAGACAGGgtaggaaaacgttaaccccatttagatttctcaatattcagcttcgtatattcat
ttgttttttcgcaatgattaggatgggttctcaatttgtgatggattagtgaactagATTGCTGGCGTAAAACGTCCCTGGCCTTTCTCTGAAGAAAATCCTGTTAGCCCAATTCAACCAAAGGTTGCATGTCTGAATGTTGGGACTGGGATACATGTGAAACCTGAGGACCTGGCTGATCCTAATCCTGATAGATTGGA
GCTTGCAATACAGGAGCCTGCTGGCATTTTCAGTGGAAGTACTCCTAAGGTCTGCTGTGGAGCCGGACAGGCTGCCGTGAAAGACAGTTGCTCAAGTTCAACCTCGCTGCAGCCTGGTTTTGCATTGAATTGGAAAGCTTCATTTGGGAATGATATCTCATCACGGGAGATTGAAACTCCTGGTGTCACCTTCTTGACTC
TGGGGCTGTCATGTTCACCTAACGAAGCCTATCATGGGAATGGAAGATGCTGCAAACCTGAACCACATTCTGCGACTCCTGAAAGTAGCGACGAATGCCAATTGCCAAACAAAGTATCAACCCATGCCCAGCAGGAAATCACTGTAGGCGTAAGTACCAAATCAGGTTTTCTGTATAAGGGATTGCTTCGGCATAGTTCA
ATCAATTCCACAGAAATTGTGCAGCAGGATGAGGGATCTATGCCTTTCTATAAGTTTCTATATGAATCAAGCAACAGAGGCACTGCAGACTTCATTTGCCAGGACAACCAAATTGCTACTAGAGTGCCTTCGAAATATGTTGACTTGGATTTAAGGTTATCTCTGTGATTGATCACGTCTTCTATGTTTGACAGAAAATT
ACTTCCAATCAAGCTAGTAAAATATCTGTGCCCTTATAGCTAATCGGTCTGTTTTTAAGTATAGTTAAATCCCAACTCCCGAACATGTGAACTATCCATATATTCAAGGGAAGGGCTTCTTGTTTTGTTATTCTAATACAGTTGAATGCAGAGTCTAGTGTGGATTTCACATGTCCGCAACAAGTGTAAAACCGGTTTTG
TACTTCACTTGATAGTGTTGATATTTTCCGCTACACTAGTGGAGCCATAGTTTTAAATGACTTCTATATGATGTTTCAGAACATTTGTAAAGGCTGAAATCAATATGCTCTTTTCTATTTGTTATGTTAATCAAGCTGAATGTGCCTTTTTTTACGTGTTTGTTACCATGGGTAGCACACTCCCTGCATCGACAGAAAAA
GCATACTCTTCAAAAGCATCTTAACATGCCTAAAACATCCTATAGCTATGTTATAATCTATGGGAGATAGATAC
Intron 2 GTACCTTCTT ... CTTGTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.73 | 17 | 3 | 7 |
| A2 | 18.64 | 24 | 4 | 7 |
| A3 | 33.33 | 17 | 12 | 5 |
| A4 | 17.65 | 7 | 2 | 1 |
| A5 | 35.85 | 17 | 11 | 8 |
| A6 | 19.73 | 59 | 20 | 9 |
| A7 | 15.49 | 30 | 8 | 3 |
| A8 | 22.67 | 29 | 12 | 5 |
| A9 | 12.33 | 32 | 3 | 6 |
| A10 | 18.31 | 29 | 3 | 10 |
>TRINITY_DN104148_c2_g4_i1 from sample A5 / Example spliced isoformCGCGGTGGTCTCAAAACAGGGCATGGTGTTCGTTTTATGACGATGGCTACCTAGATAGATGGATGGATGATCCTACAACTTCTTCTGAAAAGCAAGCACTCCCTGCTCAACCCCCTAGAGAATAGGCTTAGGCAGCAGCTGCTGGTGTTGGTGTTGGTGTTGGTGCTGGTGGATCCTAAGGAGGTGAAAAACAAGAGAAG
GATCCCATTTAAGCGGAGCTTGGACAAGATTCCTGGTTTCCGTGCAGAGATTTGGTGGCGTTTCTCTTCATGATCAACATCTATAAGTAGTGCAATGTTGACTTGCATTAGTTCTCTCCTTCTTCATGTCTCTCCCTAATTCAAATGTTTGTTGACTGCTGCCGGGGGTGCTATGGTTACATAAATATATATTATACATA
CATGCTCGTCTGCCTTTTCTTAGTTCTGATGGCTTGGAGTTATGCATATCCTCTACCCTGATGTCTTCTTCGGTTTATGGATACATCGCTGCTGTTCCTACCAATTCATTTGAAGCTCAGTTTATTCTCCTATCAAACATCAATTAAGGGTCTATAGGTCACAGCTAAGTGCTTCTCCCAGTTCTGTTCGTCAGCAGTTC
TGTTGAACAAAGGAAAAGTGGGCATAGATAGGCCTGCTCTTCTCAGTTGGTTCCTTTGGAGCTCTGTGTATACGCTTCTATCAAGAAACATCTGTGAGTATCTGCCTGTGGAGCTCTGCGTATATCTTCCTACCAACAAACATCTGTGGGTATCTGCTTGTGGAGCTCTCTGTATGCCCTCCTATCAAATAACATCTGTG
CCTATATGCCTATCATCCTGTGGAGCTCTGTGTATATCCTCCAATCGACAAACATCTGTGGGTATATGCATATCTGCCTGTTTCTTCATCCTAGTTCTGTATTTTGGAGTTCTTTATATGGGGCAATGTACCAGCTCCTAGTTCTATTGTTTTGAACTCGTGGGGTATGTCTTTTCCTTTTATTTCTGTCTATCTGCACT
TCTGTGTGAATATCCTGACAGCAATTGCAGTCAAAGCGTAGGAATCCTTCTACCCAACAATTGATTGGATGTGTTTTCCCTCTGACTCTCACTCCAAGTTCTTCATATACTAGCATCTCCTGAGCTCTGGTGAGGACCTCACACCTCAGCCGGTCTGTTAGAATTTAGATGGCAATGCTGCTGCTGAGAGCAGGCGGTCT
ATCCAACAGTCAGAAGGTACCCCTGTCATCCTTGACATATACAACAAAGGAAGGTAGCAGCATGATACAACAGGACGAGAACCAGCAGCAGCAACACCAGCAGAGGAGCTCCAGATCCAGCAGAAAGTCCAAGAATGGCCAAAAGAAGATCCCTCAGCGTGGTTTGGGTGTTGCCCAGTTGGAAAAACTACGCATGGAAG
AGCAGCAGAGGCAGGAGGCAGCCTGTCTGGCATCTCTACAACGAGCCCATGCCCTTCCCCCACTCACAGGTTCCCTACATTCTCAAGGCACCTCTCTTGTTTTCTCTCATAACTATGCCTCGCAAATAAAGGGCAGGACCCTTCAACAGCACCCTACATTCATGTCCCCAAGAAACACCTGCAAAATGCCAGACTCCATC
ATTTCTATGGCAAATATCCATTCCATTAATCTCAAGCAGCAGATTCCAATGGTGGGAGTGAGCAGCAGCAGCAGCAGTCCACAACATCAGTCGCCCAGAGAAGAGAACAGGGCCCTGTCCAGGAATTCATCTCTTGGGAGGAGCAGTGAGCCTGTTGAGTCCTGTGTGACCGATGTGGGTGTGGCCAACCCCGGCATCAT
TGCACCTGGCTTATGGCCTGTGCAGAATGGGAATCGAGATGATTTGAATCATTCCCTGAATCAGGAATTGGAGATGAGAAAGATGGATTTGTTTGGATTAAGGTCACAGAGCACCTCCAGTCCTCTGAATGATTTGAGATTCTTCGACCCCTTGATACGATATCCAGCCCCAGCAAGGAAGTTGCCAGTGGTGAGCATAT
CATCATCTGGCGCTACTATGCAATTGGAGCCCCCTTCAAACCAAAGCTATTCTAACACTCCTCCCTGGACTGAGGAAGACAGGATTGCTGGCGTAAAACGTCCCTGGCCTTTCTCTGAAGAAAATCCTGTTAGCCCAATTCAACCAAAGGTTGCATGTCTGAATGTTGGGACTGGGATACATGTGAAACCTGAGGACCTG
GCTGATCCTAATCCTGATAGATTGGAGCTTGCAATACAGGAGCCTGCTGGCATTTTCAGTGGAAGTACTCCTAAGGTCTGCTGTGGAGCCGGACAGGCTGCCGTGAAAGACAGTTGCTCAAGTTCAACCTCGCTGCAGCCTGGTTTTGCATTGAATTGGAAAGCTTCATTTGGGAATGATATCTCATCACGGGAGATTGA
AACTCCTGGTGTCACCTTCTTGACTCTGGGGCTGTCATGTTCACCTAACGAAGCCTATCATGGGAATGGAAGATGCTGCAAACCTGAACCACATTCTGCGACTCCTGAAAGTAGCGACGAATGCCAATTGCCAAACAAAGTATCAACCCATGCCCAGCAGGAAATCACTGTAGGCGTAAGTACCAAATCAGGTTTTCTGT
ATAAGGGATTGCTTCGGCATAGTTCAATCAATTCCACAGAAATTGTGCAGCAGGATGAGGGATCTATGCCTTTCTATAAGTTTCTATATGAATCAAGCAACAGAGGCACTGCAGACTTCATTTGCCAGGACAACCAAATTGCTACTAGAGTGCCTTTGGAATATGTTGACTTGGATATAGTTGAATGCAGAGTCAGGTGT
GGATTTCACGTGTCCACAACAAGTGTAAACCAAGTTTTGTACTTCACTTGACAGTACAGATTTTAACTCATGC
>TRINITY_DN104148_c2_g4_i3 from sample A5 / Example unspliced isoform:CGCGGTGGTCTCAAAACAGGGCATGGTGTTCGTTTTATGACGATGGCTACCTAGATAGATGGATGGATGATCCTACAACTTCTTCTGAAAAGCAAGCACTCCCTGCTCAACCCCCTAGAGAATAGGCTTAGGCAGCAGCTGCTGGTGTTGGTGTTGGTGTTGGTGCTGGTGGATCCTAAGGAGGTGAAAAACAAGAGAAG
GATCCCATTTAAGCGGAGCTTGGACAAGATTCCTGGTTTCCGTGCAGAGATTTGGTGGCGTTTCTCTTCATGATCAACATCTATAAGTAGTGCAATGTTGACTTGCATTAGTTCTCTCCTTCTTCATGTCTCTCCCTAATTCAAATGTTTGTTGACTGCTGCCGGGGGTGCTATGGTTACATAAATATATATTATACATA
CATGCTCGTCTGCCTTTTCTTAGTTCTGATGGCTTGGAGTTATGCATATCCTCTACCCTGATGTCTTCTTCGGTTTATGGATACATCGCTGCTGTTCCTACCAATTCATTTGAAGCTCAGTTTATTCTCCTATCAAACATCAATTAAGGGTCTATAGGTCACAGCTAAGTGCTTCTCCCAGTTCTGTTCGTCAGCAGTTC
TGTTGAACAAAGGAAAAGTGGGCATAGATAGGCCTGCTCTTCTCAGTTGGTTCCTTTGGAGCTCTGTGTATACGCTTCTATCAAGAAACATCTGTGAGTATCTGCCTGTGGAGCTCTGCGTATATCTTCCTACCAACAAACATCTGTGGGTATCTGCTTGTGGAGCTCTCTGTATGCCCTCCTATCAAATAACATCTGTG
CCTATATGCCTATCATCCTGTGGAGCTCTGTGTATATCCTCCAATCGACAAACATCTGTGGGTATATGCATATCTGCCTGTTTCTTCATCCTAGTTCTGTATTTTGGAGTTCTTTATATGGGGCAATGTACCAGCTCCTAGTTCTATTGTTTTGAACTCGTGGGGTATGTCTTTTCCTTTTATTTCTGTCTATCTGCACT
TCTGTGTGAATATCCTGACAGCAATTGCAGTCAAAGCGTAGGAATCCTTCTACCCAACAATTGATTGGATGTGTTTTCCCTCTGACTCTCACTCCAAGTTCTTCATATACTAGCATCTCCTGAGCTCTGGTGAGGACCTCACACCTCAGCCGGTCTGTTAGAATTTAGATGGCAATGCTGCTGCTGAGAGCAGGCGGTCT
ATCCAACAGTCAGAAGGTACCCCTGTCATCCTTGACATATACAACAAAGGAAGGTAGCAGCATGATACAACAGGACGAGAACCAGCAGCAGCAACACCAGCAGAGGAGCTCCAGATCCAGCAGAAAGTCCAAGAATGGCCAAAAGAAGATCCCTCAGCGTGGTTTGGGTGTTGCCCAGTTGGAAAAACTACGCATGGAAG
AGCAGCAGAGGCAGGAGGCAGCCTGTCTGGCATCTCTACAACGAGCCCATGCCCTTCCCCCACTCACAGGTTCCCTACATTCTCAAGGCACCTCTCTTGTTTTCTCTCATAACTATGCCTCGCAAATAAAGGGCAGGACCCTTCAACAGCACCCTACATTCATGTCCCCAAGAAACACCTGCAAAATGCCAGACTCCATC
ATTTCTATGGCAAATATCCATTCCATTAATCTCAAGCAGCAGATTCCAATGGTGGGAGTGAGCAGCAGCAGCAGCAGTCCACAACATCAGTCGCCCAGAGAAGAGAACAGGGCCCTGTCCAGGAATTCATCTCTTGGGAGGAGCAGTGAGCCTGTTGAGTCCTGTGTGACCGATGTGGGTGTGGCCAACCCCGGCATCAT
TGCACCTGGCTTATGGCCTGTGCAGAATGGGAATCGAGATGATTTGAATCATTCCCTGAATCAGGAATTGGAGATGAGAAAGATGGATTTGTTTGGATTAAGGTCACAGAGCACCTCCAGTCCTCTGAATGATTTGAGATTCTTCGACCCCTTGATACGATATCCAGCCCCAGCAAGGAAGTTGCCAGTGGTGAGCATAT
CATCATCTGGCGCTACTATGCAATTGGAGCCCCCTTCAAACCAAAGCTATTCTAACACTCCTCCCTGGACTGAGGAAGACAGGATTGCTGGCGTAAAACGTCCCTGGCCTTTCTCTGAAGAAAATCCTGTTAGCCCAATTCAACCAAAGGTTGCATGTCTGAATGTTGGGACTGGGATACATGTGAAACCTGAGGACCTG
GCTGATCCTAATCCTGATAGATTGGAGCTTGCAATACAGGAGCCTGCTGGCATTTTCAGgtaccttcttaggtcttttgctttcatttccagcttaaaagattgaattaaaattatgtgcaagccctgcttgctgataatattagaaagttgtatttgttagaaattctttgggagtctctcttgaacccctcaagaaaa
agacatggcaagcaaactctgaattggcatcccccaattgtagacatccttctgaactaagtttctcttgtgacagTGGAAGTACTCCTAAGGTCTGCTGTGGAGCCGGACAGGCTGCCGTGAAAGACAGTTGCTCAAGTTCAACCTCGCTGCAGCCTGGTTTTGCATTGAATTGGAAAGCTTCATTTGGGAATGATATC
TCATCACGGGAGATTGAAACTCCTGGTGTCACCTTCTTGACTCTGGGGCTGTCATGTTCACCTAACGAAGCCTATCATGGGAATGGAAGATGCTGCAAACCTGAACCACATTCTGCGACTCCTGAAAGTAGCGACGAATGCCAATTGCCAAACAAAGTATCAACCCATGCCCAGCAGGAAATCACTGTAGGCGTAAGTAC
CAAATCAGGTTTTCTGTATAAGGGATTGCTTCGGCATAGTTCAATCAATTCCACAGAAATTGTGCAGCAGGATGAGGGATCTATGCCTTTCTATAAGTTTCTATATGAATCAAGCAACAGAGGCACTGCAGACTTCATTTGCCAGGACAACCAAATTGCTACTAGAGTGCCTTTGGAATATGTTGACTTGGATATAGTTG
AATGCAGAGTCAGGTGTGGATTTCACGTGTCCACAACAAGTGTAAACCAAGTTTTGTACTTCACTTGACAGTACAGATTTTAACTCATGC