NA ----> NA
Intron 1 GTTTGGACTA ... CTGTTAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 68.53 | 31 | 66 | 69 |
| A2 | 65.93 | 23 | 34 | 55 |
| A3 | 59.68 | 25 | 31 | 43 |
| A4 | 45.21 | 40 | 34 | 32 |
| A5 | 60 | 10 | 14 | 16 |
| A6 | 71.43 | 2 | 5 | 5 |
| A7 | 49.09 | 14 | 13 | 14 |
| A8 | 57.14 | 3 | 0 | 8 |
| A9 | 67.74 | 10 | 16 | 26 |
| A10 | 54.29 | 16 | 14 | 24 |
>TRINITY_DN117276_c2_g1_i6 from sample A3 / Example spliced isoformATTTACGAGGCGTCAAATGATCCACATGTGAATTTAATTTTCCACCTCTCCACCTACGTGCAGAATCCATTGAGCCCAGTTCCTGTTATTATCCAAACATATATACATTGTTTATTTCTTTGAATAGATTGCGGAATTCAGCCATGCAATTTTGAGGGCCTGGGCTCGATTTCCCGGTGAAAAAGGCGTAAAGGACTCTG
TATGGAATGCAGTTTTGAGGGCCTAGGCTCGATTTCCAGGTGAAAAAGGTGTAAAGGACTCTCTATGGAATGCAGTTTTGAGGGGCCTAGGCTCGATTTCCCGGTGGAAAAGGCATAAAGGACTCTGTATGGATTCGATGGATGTGGGATTTTAAAGAGCCAAACGCTGTTTTTCGCGGGAAGAAGAGAAGGGTGGTTGT
ATTGGTCGTGGAAGCTTGTGAACTGGGTGAAAACATAGGAGGGGGGGATTGTCATGGCATTGCGGATAGAACCCAATTTTCCGCATTGCTCTGCAAGCAAATCAAATGGGGTTGTTTTACATCCATTAAGTAGAAGAGGTTCTCTTTACAAGGCATGCTTTAAGGTCAAATATGTACCAAGTTGTATGGCCAATCTAAGG
CAGAAAGATAGCAGCAGGAGTTCCAGTTCAAATTCTGATGGAGACTTGGAAAAAATGAGGCTAAAATTGAATCAATCTATTCGAGGGGAAGATGCCAGTAATGACCTGGTACAATGCCTGCATGATGCTGCACGGGTATTTGAACTAGCTATAGAGAAACAAGGTTCTTTAACACGGGGGCCCTTATTTTCAAAGGCTTG
GCTTGGCATTGATAAGAATGCTTGGGTTAAGACACTTTCATATCAGGCTTCTGTACATGCTCTATTACAAGCAGCCACTGAAATTGCATCACGAGGAGACGGCAGAGACAGAGAAGTTAATGTTTTTGTCCAGCGAAGTCTATTATGCCAATCTAGCCCATTGGAGAAGTCAATTAGAGATCAACTCTTTTCCAAGGACC
CTGTGGCATGCGAATGGTTTTGGTCCCATCAACATCCTGCTATTGTAACAAACTTTGTCAATATCTTAGAAAATGATCCACGCTTCACTGCTGTAACTTCGCTAGGATGGGAGGAAGCATCATTGAGTCCGAGTAGAGCATGTGATCTGTCTCTTCTTATGCTGGCACTGAGCAGTATAGCGGCAGTTATGAAACTTGGA
CCAGCCAAGGTTTCTTGCCCTCAATTTTCTTCCACCTTATTAGAGATGAATGGTAAACTAATGGATACGCTGGCAGAATTGATTCCTATAGATCAAGTATATCACTTCACTTCTGAGGTGGGTCTACGGAGGGAGTTTCTTCTATACTTTGGTCCACGAGCTACTGCTTACAGGGGTAAAAATGATTTGTTGGGAGGAGA
AGAAGGAGCATTTTGGGTTGATCTGGTTCAGCAACAACTCCGGGGAGCAATCCACAGGGAACGAATATGGTCAAGGTTGACAACATATGAAAGCATTGAGGTACTTGAAAGGGATCTGGCAATATTTGGATTTTTTATTGCTTTAGGCAGGAGGACTCAGTCTTACCTAGATGCCAATAACACTGATATGCTGGATGAGT
CTCTTGAAAGCTTTCTAAGATATTTGGTTGGTGGCAGTGTTCTATTTTATCCACAGCTTGCATCTGTGAGCACTTACCAGATGTTTGTGGAGGTGGTGTGTGAAGAGATGGACTGGCTACCATTCTATCCAGAAGGTTCAACAATGGGAAGGCAAGTGCAGGAAAACAGGAGGGTCCATCAAAGTGTATCAAAAATGGAA
GCTGTCACATTAGCACTAGATGTTTGTTCCCATTGGATGCAGCACTTCTTAAAATATAGTGTATGGTTAGAGAAACCTTCACATATTAAAGCAGCCAGATTCTTGTCTACTAGCCATAGTAAATTGGAGGAATGTAGGAATGCATTGTATATTTCAGCTACAGCTGCAGCTCCAAAATATGAAATGGGGAAAGGCATAGA
TGTTGGAGGAGAAAACAGATGGAGTTCAGGAGAGCAAACATCATCCAAGGCGTATACTCGAATTGAGGAGATAAATTTGTTTGATAAGGAACTGCAGTGTGTTGATGAGGCTCTCAACAGGTTAGAAGGTTTGCTCAAGGAAATTCATGTTTGTAGCTCCAACTCGGACAAGGATTACTTAGAAGCAGCTTGTACAGATC
TAGAAAGAATTCGAAAGTTGAAAAAAGAGGCAGAGTTTCTTGAAGCATCCTGGAGAGCAAAGGCAGCATCAGTGCAGCAGGGCATCGAAGATGAGTACTTCCAACCCCCTAAGTCTGAAAGAAGTAGTCAATCTAAAAATAGATCTGGCAAATTAGGGCAGGGGAATCAAAATGAAAAGGACAGTAAGGTTTCTCAAGGA
AGAAGCGTAGAGAATGTTCCTCAGGGCTTGCGGAATTTTTTGTTATCCCATTCAAATACCAAAAAATGCGGGGATGAAGATCGAGCAATCAACATAGGTTCTACAGAAGATGGGGCATTTGAGCAGACTATTCCAAGACTAGAAGATGGAGCAACAGTTTCAAATGAGATTAGGCGATTTGAACAATTACAGAATGAGCT
GTTTGAACTTGAGAGACGAGTTCAAGGAAATGCTGATGGATGTCTAGATCAGAAGGGGTATTACAATAATAGCGATCAAGTTGCTAGCAGCTCATTAACAAGAAGTTCAGATTATAAATTAACTAAAGTGGAAAAGGAAGACAACATTCTGGGCAAATCCATTGGAAAGTTGAAAGAAGCTGGCTCGGATGTCTGGGAAG
GTACTCGGCTTCTTGCTACAGATGTGGCTGTTGCAATGGGCTTCCTACAAAGAGCCTTAACGGGTGATGAGCTGACTGACAAGGAAAAGAAAACTCTTCGAAGGACTCTAACAGATATAGCTTCAGTTATACCAATCGGAATCCTCATGCTCCTTCCGGTTACAGCTGTTGGACATGCTGCTATGTTAGCTGCGATAAAA
AGATACTTCCCTGCTATGATACCCTCTGCATATGCACGTGAGAGGTTGGATTTGGTGAGGCAGTTAGAGAAGTTGCAGGAAATGGATGTTAGTGCATCAAACGTAGATGAAGAGAATGTAGAGATGCCGGAGGTGCAGATAAATGCTGTTGGCGATGATCCATGATGTGTCAGAGCACGAGTTAAATAGACCATCATAAA
CATTTGTCTTTCTGATAGAGCTAGAAGACAATGCGCACTGGTCGATTTCAACTCAAATTATACTGTAAAGTGAACAAGTTCCTTGCCTTATAATTGATTGCAACATATTTTTTTCTGTAAGATAAAACCGAAAAAAGACACTGTTTTATATCAAATTCCGCAATTCAGTTCCCCTTCCTCGGAAATGGAAGTGGATGTCA
AATGTTCAATTTATACCATGTGTTGATATACAAATTCATTTTGAAATGTTCTCAATGGTGCTTTTCTCTCCAAATTTGGAAGTCCCATCAGAAGCACTGTACAAACATATACTCAGCAATGTAATAATGTGCAAGTAATAATCAAAATTTTATCTTGTTTATTTCTTCCTCAAAGGTACTTCAATAATGCAAAGCTTGAA
TTGCTGGATAAACCTTGTTAACTGGTTGTCGTACAAGTGTTGAACGCAATTTCTCCACCTTGGTTGCACC
>TRINITY_DN117276_c2_g1_i4 from sample A3 / Example unspliced isoform:ATTTACGAGGCGTCAAATGATCCACATGTGAATTTAATTTTCCACCTCTCCACCTACGTGCAGAATCCATTGAGCCCAGTTCCTGTTATTATCCAAACATATATACATTGTTTATTTCTTTGAATAGATTGCGGAATTCAGCCATGCAATTTTGAGGGCCTGGGCTCGATTTCCCGGTGAAAAAGGCGTAAAGGACTCTG
TATGGAATGCAGTTTTGAGGGCCTAGGCTCGATTTCCAGGTGAAAAAGGTGTAAAGGACTCTCTATGGAATGCAGTTTTGAGGGGCCTAGGCTCGATTTCCCGGTGGAAAAGGCATAAAGGACTCTGTATGGATTCGATGGATGTGGGATTTTAAAGAGCCAAACGCTGTTTTTCGCGGGAAGAAGAGAAGGGTGGTTGT
ATTGGTCGTGGAAGCTTGTGAACTGGGTGAAAACATAGGAGGGGGGGATTGTCATGGCATTGCGGATAGAACCCAATTTTCCGCATTGCTCTGCAAGCAAATCAAATGGGGTTGTTTTACATCCATTAAGTAGAAGAGGTTCTCTTTACAAGGCATGCTTTAAGGTCAAATATGTACCAAGTTGTATGGCCAATCTAAGG
CAGAAAGATAGCAGCAGgtttggactatcaaagtttgaaaagttatcacctttctgtaatatgaagctgaagtcatttcaatctattattgtatcagctgcttcagaagatggtattgctgttaatagGAGTTCCAGTTCAAATTCTGATGGAGACTTGGAAAAAATGAGGCTAAAATTGAATCAATCTATTCGAGGGGA
AGATGCCAGTAATGACCTGGTACAATGCCTGCATGATGCTGCACGGGTATTTGAACTAGCTATAGAGAAACAAGGTTCTTTAACACGGGGGCCCTTATTTTCAAAGGCTTGGCTTGGCATTGATAAGAATGCTTGGGTTAAGACACTTTCATATCAGGCTTCTGTACATGCTCTATTACAAGCAGCCACTGAAATTGCAT
CACGAGGAGACGGCAGAGACAGAGAAGTTAATGTTTTTGTCCAGCGAAGGTCAGAAGTTTATCAACCATGTTTTTTGCCAAGGCC
Intron 2 GTATTCTACC ... TTCTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.56 | 43 | 18 | 10 |
| A2 | 31.51 | 25 | 12 | 11 |
| A3 | 25.22 | 43 | 18 | 11 |
| A4 | 26.13 | 41 | 18 | 11 |
| A5 | 21.57 | 20 | 9 | 2 |
| A6 | 14.29 | 3 | 0 | 1 |
| A7 | 25 | 72 | 35 | 13 |
| A8 | 22.22 | 28 | 8 | 8 |
| A9 | 21.62 | 58 | 21 | 11 |
| A10 | 21.99 | 55 | 26 | 5 |
>TRINITY_DN116961_c0_g1_i10 from sample A2 / Example spliced isoformGCGGGGGGAAGGCGTGTAGGCCATTTACGAGGCGTCAAATGATCCACATGTGAATTTAATTTTCCACCTCTCCACCTACGTGCAGAATCCATTGAGCCCAGTTCCTGTTATTATCCAAACATATATACATTGTTTATTTCTTTGAATAGATTGCGGAATTCAGCCATGCAATTTTGAGGGCCTGGGCTCGATTTCCCGGT
GAAAAAGGCGTAAAGGACTCTGTATGGAATGCAGTTTTGAGGGCCTAGGCTCGATTTCCAGGTGAAAAAGGTGTAAAGGACTCTCTATGGAATGCAGTTTTGAGGGGCCTAGGCTCGATTTCCCGGTGGAAAAGGCATAAAGGACTCTGTATGGATTCGATGGATGTGGGATTTTAAAGAGCCAAACGCTGTTTTTCGCG
GGAAGAAGAGAAGGGTGGTTGTATTGGTCGTGGAAGCTTGTGAACTGGGTGAAAACATAGGAGGGGGGGATTGTCATGGCATTGCGGATAGAACCCAATTTTCCGCATTGCTCTGCAAGCAAATCAAATGGGGTTGTTTTACATCCATTAAGTAGAAGAGGTTCTCTTTACAAGGCATGCTTTAAGGTCAAATATGTACC
AAGTTGTATGGCCAATCTAAGGCAGAAAGATAGCAGCAGCTGCTTCAGAAGATGGTATTGCTGTTAATAGGAGTTCCAGTTCAAATTCTGATGGAGACTTGGAAAAAATGAGGCTAAAATTGAATCAATCTATTCGAGGGGAAGATGCCAGTAATGACCTGGTACAATGCCTGCATGATGCTGCACGGGTATTTGAACTA
GCTATAGAGAAACAAGGTTCTTTAACACGGGGGCCCTTATTTTCAAAGGCTTGGCTTGGCATTGATAAGAATGCTTGGGTTAAGACACTTTCATATCAGGCTTCTGTACATGCTCTATTACAAGCAGCCACTGAAATTGCATCACGAGGAGACGGCAGAGACAGAGAAGTTAATGTTTTTGTCCAGCGAAGTCTATTATG
CCAATCTAGCCCATTGGAGAAGTCAATTAGAGATCAACTCTTTTCCAAGGACCCTGTGGCATGCGAATGGTTTTGGTCCCATCAACATCCTGCTATTGTAACAAACTTTGTCAATATCTTAGAAAATGATCCACGCTTCACTGCTGTAACTTCGCTAGGATGGGAGGAAGCATCATTGAGTCCGAGTAGAGCATGTGATC
TGTCTCTTCTTATGCTGGCACTGAGCAGTATAGCGGCAGTTATGAAACTTGGACCAGCCAAGGTTTCTTGCCCTCAATTTTCTTCCACCTTATTAGAGATGAATGGTAAACTAATGGATACGCTGGCAGAATTGATTCCTATAGATCAAGTATATCACTTCACTTCTGAGGTGGGTCTACGGAGGGAGTTTCTTCTATAC
TTTGGTCCACGAGCTACTGCTTACAGGGGTAAAAATGATTTGTTGGGAGGAGAAGAAGGAGCATTTTGGGTTGATCTGGTTCAGCAACAACTCCGGGGAGCAATCCACAGGGAACGAATATGGTCAAGGTTGACAACATATGAAAGCATTGAGGTACTTGAAAGGGATCTGGCAATATTTGGATTTTTTATTGCTTTAGG
CAGGAGGACTCAGTCTTACCTAGATGCCAATAACACTGATATGCTGGATGAGTCTCTTGAAAGCTTTCTAAGATATTTGGTTGGTGGCAGTGTTCTATTTTATCCACAGCTTGCATCTGTGAGCACTTACCAGATGTTTGTGGAGGTGGTGTGTGAAGAGATGGACTGGCTACCATTCTATCCAGAAGGTTCAACAATGG
GAAGGCAAGTGCAGGAAAACAGGAGGGTCCATCAAAGTGTATCAAAAATGGAAGCTGTCACATTAGCACTAGATGTTTGTTCCCATTGGATGCAGCACTTCTTAAAATATAGTGTATGGTTAGAGAAACCTTCACATATTAAAGCAGCCAGATTCTTGTCTACTAGCCATAGTAAATTGGAGGAATGTAGGAATGCATTG
TATATTTCAGCTACAGCTGCAGCTCCAAAATATGAAATGGGGAAAGGCATAGATGTTGGAGGAGAAAACAGATGGAGTTCAGGAGAGCAAACATCATCCAAGGCGTATACTCGAATTGAGGAGATAAATTTGTTTGATAAGGAACTGCAGTGTGTTGATGAGGCTCTCAACAGGTTAGAAGGTTTGCTCAAGGAAATTCA
TGTTTGTAGCTCCAACTCGGACAAGGATTACTTAGAAGCAGCTTGTACAGATCTAGAAAGAATTCGAAAGTTGAAAAAAGAGGCAGAGTTTCTTGAAGCATCCTGGAGAGCAAAGGCAGCATCAGTGCAGCAGGTGGCTCAACATTTTTTCCTTTTCTTCTTTTACTTCCATTTTTTGAATAGGGTTTGTGGGCAC
>TRINITY_DN116961_c0_g1_i2 from sample A2 / Example unspliced isoform:AGGATGGGAGGAAGCATCATTGAGTCCGAGTAGAGCATGTGATCTGTCTCTTCTTATGCTGGCACTGAGCAGTATAGCGGCAGTTATGAAACTTGGACCAGCCAAGGTTTCTTGCCCTCAATTTTCTTCCACCTTATTAGAGATGAATGGTAAACTAATGGATACGCTGGCAGAATTGATTCCTATAGATCAAGTATATC
ACTTCACTTCTGAGGTGGGTCTACGGAGGGAGTTTCTTCTATACTTTGGTCCACGAGCTACTGCTTACAGGGGTAAAAATGATTTGTTGGGAGGAGAAGAAGGAGCATTTTGGGTTGATCTGGTTCAGCAACAACTCCGGGGAGCAATCCACAGGGAACGAATATGGTCAAGGTTGACAACATATGAAAGCATTGAGGTA
CTTGAAAGGGATCTGGCAATATTTGGATTTTTTATTGCTTTAGGCAGGAGGACTCAGTCTTACCTAGATGCCAATAACACTGATATGCTGGATGAGTCTCTTGAAAGCTTTCTAAGATATTTGGTTGGTGGCAGTGTTCTATTTTATCCACAGCTTGCATCTGTGAGCACTTACCAGATGTTTGTGGAGGTGGTGTGTGA
AGAGATGGACTGGCTACCATTCTATCCAGAAGGTTCAACAATGGGAAGGCAAGTGCAGGAAAACAGGAGGGTCCATCAAAGTGTATCAAAAATGGAAGCTGTCACATTAGCACTAGATGTTTGTTCCCATTGGATGCAGCACTTCTTAAAATATAGTGTATGGTTAGAGAAACCTTCACATATTAAAGCAGCCAGATTCT
TGTCTACTAGgtattctacctatttgtgaaatgataaattctagctttttatgtaaatatctaaagttacttaattttctgttttaccagctgtttgacaacatttgaatcttgtgcatattgcaaatttctaatatcatgaaattcagtatgtgtttgctttgctgatatccgagtatgttgatatttttctttgcagC
CATAGTAAATTGGAGGAATGTAGGAATGCATTGTATATTTCAGCTACAGCTGCAGCTCCAAAATATGAAATGGGGAAAGGCATAGATGTTGGAGGAGAAAACAGATGGAGTTCAGGAGAGCAAACATCATCCAAGGCGTATACTCGAATTGAGGAGATAAATTTGTTTGATAAGGAACTGCAGTGTGTTGATGAGGCTCT
CAACAGGTTAGAAGGTTTGCTCAAGGAAATTCATGTTTGTAGCTCCAACTCGGACAAGGATTACTTAGAAGCAGCTTGTACAGATCTAGAAAGAATTCGAAAGTTGAAAAAAGAGGCAGAGTTTCTTGAAGCATCCTGGAGAGCAAAGGCAGCATCAGTGCAGCAGGGCATCGAAGATGAGTACTTCCAACCCCCTAAGT
CTGAAAGAAGTAGTCAATCTAAAAATAGATCTGGCAAATTAGGGCAGGGGAATCAAAATGAAAAGGACAGTAAGGTTTCTCAAGGAAGAAGCGTAGAGAATGTTCCTCAGGGCTTGCGGAATTTTTTGTTATCCCATTCAAATACCAAAAAATGCGGGGATGAAGATCGAGCAATCAACATAGGTTCTACAGAAGATGGG
GCATTTGAGCAGACTATTCCAAGACTAGAAGATGGAGCAACAGTTTCAAATGAGATTAGGCGATTTGAACAATTACAGAATGAGCTGTTTGAACTTGAGAGACGAGTTCAAGGAAATGCTGATGGATGTCTAGATCAGAAGGGGTATTACAATAATAGCGATCAAGTTGCTAGCAGCTCATTAACAAGAAGTTCAGATTA
TAAATTAACTAAGGTGGAAAAGGAAGACAACATTCTGGGCAAATCCATTGGAAAGTTGAAAGAAGCTGGCTCGGATGTCTGGGAAGGTACTCGGCTTCTTGCTACAGATGTGGCTGTTGCAATGGGCTTCCTACAAAGAGCCTTAACGGGTGATGAGCTGACTGACAAGGAAAAGAAAACTCTTCGAAGGACTCTAACAG
ATATAGCTTCAGTTATACCAATCGGAATCCTCATGCTCCTTCCGGTATGTCTACTGTAGCATATATATAGGCCTTTTATCTGCAAATGGATTATTCTTTTACTCTTTGCATTCCAAATTGAAGAATATCAAG
Intron 3 GTCAGTTTCA ... TCTTCCTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 9.88 | 73 | 2 | 8 |
| A2 | 6.67 | 70 | 2 | 5 |
| A3 | 23.08 | 40 | 0 | 12 |
| A4 | 12.86 | 61 | 1 | 9 |
| A5 | 15.38 | 22 | 1 | 4 |
| A6 | 16.67 | 5 | 0 | 1 |
| A7 | 6.35 | 59 | 0 | 4 |
| A8 | 17.86 | 23 | 0 | 5 |
| A9 | 8.59 | 53.2 | 0 | 5 |
| A10 | 4.65 | 41 | 0 | 2 |
>TRINITY_DN128422_c0_g2_i2 from sample A1 / Example spliced isoformGGCCATTTACGAGGCGTCAAATGATCCACATGTGAATTTAATTTTCCACCTCTCCACCTACGTGCAGAATCCATTGAGCCCAGTTCCTGTTATTATCCAAACATATATACATTGTTTATTTCTTTGAATAGATTGCGGAATTCAGCCATGCAATTTTGAGGGCCTGGGCTCGATTTCCCGGTGAAAAAGGCGTAAAGGAC
TCTGTATGGAATGCAGTTTTGAGGGCCTAGGCTCGATTTCCAGGTGAAAAAGGTGTAAAGGACTCTCTATGGAATGCAGTTTTGAGGGGCCTAGGCTCGATTTCCCGGTGAAAAAGGTGTAAAGGACTCTCTATGGAATGCAGTTTTGAGGGGCCTAGGCTCGATTTCCCGGTGGAAAAGGCATAAAGGACTCTGTATGG
ATTCGATGGATGTGGGATTTTAAAGAGCCAAACGCTGTTTTTCGCGGGAAGAAGAGAAGGGTGGTTGTATTGGTCGTGGAAGCTTGTGAACTGGGTGAAAACATAGGAGGGGGGGATTGTCATGGCATTGCGGATAGAACCCAATTTTCCGCATTGCTCTGCAAGCAAATCAAATGGGGTTGTTTTACATCCATTAAGTA
GAAGAGGTTCTCTTTACAAGGCATGCTTTAAGGTCAAATATGTACCAAGTTGTATGGCCAATCTAAGGCAGAAAGATAGCAGCAGGTTTGGACTATCAAAGTTTGAAAAGTTATCACCTTTCTGTAATATGAAGCTGAAGTCATTTCAATCTATTATTGTATCAGCTGCTTCAGAAGATGGTATTGCTGTTAATAGGAGT
TCCAGTTCAAATTCTGATGGAGACTTGGAAAAAATGAGGCTAAAATTGAATCAATCTATTCGAGGGGAAGATGCCAGTAATGACCTGGTACAATGCCTGCATGATGCTGCACGGGTATTTGAACTAGCTATAGAGAAACAAGGTTCTTTAACACGGGGGCCCTTATTTTCAAAGGCTTGGCTTGGCATTGATAAGAATGC
TTGGGTTAAGACACTTTCATATCAGGCTTCTGTACATGCTCTATTACAAGCAGCCACTGAAATTGCATCACGAGGAGACGGCAGAGACAGAGAAGTTAATGTTTTTGTCCAGCGAAGTCTATTATGCCAATCTAGCCCATTGGAGAAGTCAATTAGAGATCAACTCTTTTCCAAGGACCCTGTGGCATGCGAATGGTTTT
GGTCCCAACAACATCCTGCTATTGTAACAAACTTTGTCAATATCTTAGAAAATGATCCACGCTTCACTGCTGTAACTTCGCTAGGATGGGAGGAAGCATCATTGAGTCCGAGTAGAGCATGTGATCTGTCTCTTCTTATGCTGGCACTGAGCAGTATAGCGGCAGTTATGAAACTTGGACCAGCCAAGGTTTCTTGCCCT
CAATTTTCTTCCACCTTATTAGAGATGAATGGTAAACTAATGGATACGCTGGCAGAATTGATTCCTATAGATCAAGTATATCACTTCACTTCTGAGGTGGGTCTACGGAGGGAGTTTCTTCTATACTTTGGTCCACGAGCTACTGCTTACAGGGGTAAAAATGATTTGTTGGGAGGAGAAGAAGGAGCATTTTGGGTTGA
TCTGGTTCAGCAACAACTCCGGGGAGCAATCCACAGGGAACGAATATGGTCAAGGTTGACAACATATGAAAGCATTGAGGTACTTGAAAGGGATCTGGCAATATTTGGATTTTTTATTGCTTTAGGCAGGAGGACTCAGTCTTACCTAGATGCCAATAACACTGATATGCTGGATGAGTCTCTTGAAAGCTTTCTAAGAT
ATTTGGTTGGTGGCAGTGTTCTATTTTATCCACAGCTTGCATCTGTGAGCACTTACCAGATGTTTGTGGAGGTGGTGTGTGAAGAGATGGACTGGCTACCATTCTATCCAGAAGGTTCAACAATGGGAAGGCAAGTGCAGGAAAACAGGAGGGTCCATCAAAGTGTATCAAAAATGGAAGCTGTCACATTAGCACTAGAT
GTTTGTTCCCATTGGATGCAGCACTTCTTAAAATATAGTGTATGGTTAGAGAAACCTTCACATATTAAAGCAGCCAGATTCTTGTCTACTAGCCATAGTAAATTGGAGGAATGTAGGAATGCATTGTATATTTCAGCTACAGCTGCAGCTCCAAAATATGAAATGGGGAAAGGCATAGATGTTGGAGGAGAAAACAGATG
GAGTTCAGGAGAGCAAACATCATCCAAGGCGTATACTCGAATTGAGGAGATAAATTTGTTTGATAAGGAACTGCAGTGTGTTGATGAGGCTCTCAACAGGTTAGAAGGTTTGCTCAAGGAAATTCATGTTTGTAGCTCCAACTCGGACAAGGATTACTTAGAAGCAGCTTGTACAGATCTAGAAAGAATTCGAAAGTTGA
AAAAAGAGGCAGAGTTTCTTGAAGCATCCTGGAGAGCAAAGGCAGCATCAGTGCAGCAGGTGGCTCAACATTTTTTCCTTTTCTTCTTTTACTTCCATTTTTTGAATAGGGTTTGTGGGCATATCTGTGGG
>TRINITY_DN128422_c0_g2_i3 from sample A1 / Example unspliced isoform:ACTTACCAGATGTTTGTGGAGgtcagtttcatatgctgatctactacctgattgaacactttccaagcattatataaatggtaggtatttttgaaaactaaacaggttatgtggctgaaaattgatagttctgcatcttccttagGTGGTGTGTGAAGAGATGGACTGGCTACCATTCTATCCAGAAGGTTCAACAATGG
GAAGGCAAGTGCAGGAAAACAGGAGGGTCCATCAAAGTGTATCAAAAATGGAAGCTGTCACATTAGCACTAGATGTTTGTTCCCATTGGATGCAGCACTTCTTAAAATATAGTGTATGGTTAGAGAAACCTTCACATATTAAAGCAGCCAGATTCTTGTCTACTAGCCATAGTAAATTGGAGGAATGTAGGAATGCATTG
TATATTTCAGCTACAGCTGCAGCTCCAAAATATGAAATGGGGAAAGGCATAGATGTTGGAGGAGAAAACAGATGGAGTTCAGGAGAGCAAACATCATCCAAGGCGTATACTCGAATTGAGGAGATAAATTTGTTTGATAAGGAACTGCAGTGTGTTGATGAGGCTCTCAACAGGTTAGAAGGTTTGCTCAAGGAAATTCA
TGTTTGTAGCTCCAACTCGGACAAGGATTACTTAGAAGCAGCTTGTACAGATCTAGAAAGAATTCGAAAGTTGAAAAAAGAGGCAGAGTTTCTTGAAGCATCCTGGAGAGCAAAGGCAGCATCAGTGCAGCAGGGCATCGAAGATGAGTACTTCCAACCCCCTAAGTCTGAAAGAAGTAGTCAATCTAAAAATAGATCTG
GCAAATTAGGGCAGGGGAATCAAAATGAAAAGGACAGTAAGGTTTCTCAAGGAAGAAGCGTAGAGAATGTTCCTCAGGGCTTGCGGAATTTTTTGTTATCCCATTCAAATACCAAAAAATGCGGGGATGAAGATCGAGCAATCAACATAGGTTCTACAGTATGTTACACATTTACTACTGTTTAAACTTTGCCAATATTT
TCTGTTAAAACTGTGAAGTGCATTAGGAACAAAATGATATTAACCCCTTGATGCTTTCTCTAGCCTCCTCTGATGTCAATCAGTCTCAGGAGAATGCAAATGTTTTTTATAACATTAATTGTTGGAAGAAGAGAATATTAAAGACTAACACATTTTGTTGTTTATCAATTAAATCATGAAAAGTTTGATTGCCTCAGATT
AAGTATGATTCCACCTTTTGTTTTTCATGACTGGCTTCTTCCGGTGCACAATATTCTATATAAGCTAGAATCTAGATTACT
Intron 4 GTTTGGACTA ... ATTGTATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 72.07 | 25 | 66 | 63 |
| A2 | 67.24 | 19 | 34 | 44 |
| A3 | 55 | 27 | 31 | 35 |
| A4 | 50.85 | 29 | 34 | 26 |
| A5 | 56.52 | 10 | 14 | 12 |
| A6 | 62.5 | 3 | 5 | 5 |
| A7 | 40.35 | 17 | 13 | 10 |
| A8 | 100 | 0 | 0 | 5 |
| A9 | 46.99 | 22 | 16 | 23 |
| A10 | 60.78 | 10 | 14 | 17 |
>TRINITY_DN128422_c0_g2_i11 from sample A1 / Example spliced isoformATAGCTGTCATTTTAAAATGTTGATCTCAATATCGATGATTTATTTGATCAGTTTTATCTTATATCATTTGAAGAATAGCAAGCTCTTACCTTGTGTACTATTTTTGCAGCAAATCAAATGGGGTTGTTTTACATCCATTAAGTAGAAGAGGTTCTCTTTACAAGGCATGCTTTAAGGTCAAATATGTACCAAGTTGTAT
GGCCAATCTAAGGCAGAAAGATAGCAGCAGCTGCTTCAGAAGATGGTATTGCTGTTAATAGGAGTTCCAGTTCAAATTCTGATGGAGACTTGGAAAAAATGAGGCTAAAATTGAATCAATCTATTCGAGGGGAAGATGCCAGTAATGACCTGGTACAATGCCTGCATGATGCTGCACGGGTATTTGAACTAGCTATAGAG
AAACAAGGTTCTTTAACACGGGGGCCCTTATTTTCAAAGGCTTGGCTTGGCATTGATAAGAATGCTTGGGTTAAGACACTTTCATATCAGGCTTCTGTACATGCTCTATTACAAGCAGCCACTGAAATTGCATCACGAGGAGACGGCAGAGACAGAGAAGTTAATGTTTTTGTCCAGCGAAG
>TRINITY_DN128422_c0_g2_i2 from sample A1 / Example unspliced isoform:GGCCATTTACGAGGCGTCAAATGATCCACATGTGAATTTAATTTTCCACCTCTCCACCTACGTGCAGAATCCATTGAGCCCAGTTCCTGTTATTATCCAAACATATATACATTGTTTATTTCTTTGAATAGATTGCGGAATTCAGCCATGCAATTTTGAGGGCCTGGGCTCGATTTCCCGGTGAAAAAGGCGTAAAGGAC
TCTGTATGGAATGCAGTTTTGAGGGCCTAGGCTCGATTTCCAGGTGAAAAAGGTGTAAAGGACTCTCTATGGAATGCAGTTTTGAGGGGCCTAGGCTCGATTTCCCGGTGAAAAAGGTGTAAAGGACTCTCTATGGAATGCAGTTTTGAGGGGCCTAGGCTCGATTTCCCGGTGGAAAAGGCATAAAGGACTCTGTATGG
ATTCGATGGATGTGGGATTTTAAAGAGCCAAACGCTGTTTTTCGCGGGAAGAAGAGAAGGGTGGTTGTATTGGTCGTGGAAGCTTGTGAACTGGGTGAAAACATAGGAGGGGGGGATTGTCATGGCATTGCGGATAGAACCCAATTTTCCGCATTGCTCTGCAAGCAAATCAAATGGGGTTGTTTTACATCCATTAAGTA
GAAGAGGTTCTCTTTACAAGGCATGCTTTAAGGTCAAATATGTACCAAGTTGTATGGCCAATCTAAGGCAGAAAGATAGCAGCAGgtttggactatcaaagtttgaaaagttatcacctttctgtaatatgaagctgaagtcatttcaatctattattgtatcagCTGCTTCAGAAGATGGTATTGCTGTTAATAGGAGT
TCCAGTTCAAATTCTGATGGAGACTTGGAAAAAATGAGGCTAAAATTGAATCAATCTATTCGAGGGGAAGATGCCAGTAATGACCTGGTACAATGCCTGCATGATGCTGCACGGGTATTTGAACTAGCTATAGAGAAACAAGGTTCTTTAACACGGGGGCCCTTATTTTCAAAGGCTTGGCTTGGCATTGATAAGAATGC
TTGGGTTAAGACACTTTCATATCAGGCTTCTGTACATGCTCTATTACAAGCAGCCACTGAAATTGCATCACGAGGAGACGGCAGAGACAGAGAAGTTAATGTTTTTGTCCAGCGAAGTCTATTATGCCAATCTAGCCCATTGGAGAAGTCAATTAGAGATCAACTCTTTTCCAAGGACCCTGTGGCATGCGAATGGTTTT
GGTCCCAACAACATCCTGCTATTGTAACAAACTTTGTCAATATCTTAGAAAATGATCCACGCTTCACTGCTGTAACTTCGCTAGGATGGGAGGAAGCATCATTGAGTCCGAGTAGAGCATGTGATCTGTCTCTTCTTATGCTGGCACTGAGCAGTATAGCGGCAGTTATGAAACTTGGACCAGCCAAGGTTTCTTGCCCT
CAATTTTCTTCCACCTTATTAGAGATGAATGGTAAACTAATGGATACGCTGGCAGAATTGATTCCTATAGATCAAGTATATCACTTCACTTCTGAGGTGGGTCTACGGAGGGAGTTTCTTCTATACTTTGGTCCACGAGCTACTGCTTACAGGGGTAAAAATGATTTGTTGGGAGGAGAAGAAGGAGCATTTTGGGTTGA
TCTGGTTCAGCAACAACTCCGGGGAGCAATCCACAGGGAACGAATATGGTCAAGGTTGACAACATATGAAAGCATTGAGGTACTTGAAAGGGATCTGGCAATATTTGGATTTTTTATTGCTTTAGGCAGGAGGACTCAGTCTTACCTAGATGCCAATAACACTGATATGCTGGATGAGTCTCTTGAAAGCTTTCTAAGAT
ATTTGGTTGGTGGCAGTGTTCTATTTTATCCACAGCTTGCATCTGTGAGCACTTACCAGATGTTTGTGGAGGTGGTGTGTGAAGAGATGGACTGGCTACCATTCTATCCAGAAGGTTCAACAATGGGAAGGCAAGTGCAGGAAAACAGGAGGGTCCATCAAAGTGTATCAAAAATGGAAGCTGTCACATTAGCACTAGAT
GTTTGTTCCCATTGGATGCAGCACTTCTTAAAATATAGTGTATGGTTAGAGAAACCTTCACATATTAAAGCAGCCAGATTCTTGTCTACTAGCCATAGTAAATTGGAGGAATGTAGGAATGCATTGTATATTTCAGCTACAGCTGCAGCTCCAAAATATGAAATGGGGAAAGGCATAGATGTTGGAGGAGAAAACAGATG
GAGTTCAGGAGAGCAAACATCATCCAAGGCGTATACTCGAATTGAGGAGATAAATTTGTTTGATAAGGAACTGCAGTGTGTTGATGAGGCTCTCAACAGGTTAGAAGGTTTGCTCAAGGAAATTCATGTTTGTAGCTCCAACTCGGACAAGGATTACTTAGAAGCAGCTTGTACAGATCTAGAAAGAATTCGAAAGTTGA
AAAAAGAGGCAGAGTTTCTTGAAGCATCCTGGAGAGCAAAGGCAGCATCAGTGCAGCAGGTGGCTCAACATTTTTTCCTTTTCTTCTTTTACTTCCATTTTTTGAATAGGGTTTGTGGGCATATCTGTGGG
Intron 5 GTTGACAACA ... AAGCATTGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 48.88 | 80 | 80 | 73 |
| A2 | 51.75 | 69 | 76 | 72 |
| A3 | 49.26 | 69 | 63 | 71 |
| A4 | 49.27 | 52 | 51 | 50 |
| A5 | 50.48 | 26 | 24 | 29 |
| A6 | 64.71 | 3 | 5 | 6 |
| A7 | 51.88 | 77 | 78 | 88 |
| A8 | 55.15 | 37 | 44 | 47 |
| A9 | 49.85 | 82 | 83 | 80 |
| A10 | 57.3 | 60 | 77 | 84 |
>TRINITY_DN128422_c0_g2_i1 from sample A1 / Example spliced isoformGGCCATTTACGAGGCGTCAAATGATCCACATGTGAATTTAATTTTCCACCTCTCCACCTACGTGCAGAATCCATTGAGCCCAGTTCCTGTTATTATCCAAACATATATACATTGTTTATTTCTTTGAATAGATTGCGGAATTCAGCCATGCAATTTTGAGGGCCTGGGCTCGATTTCCCGGTGAAAAAGGCGTAAAGGAC
TCTGTATGGAATGCAGTTTTGAGGGCCTAGGCTCGATTTCCAGGTGAAAAAGGTGTAAAGGACTCTCTATGGAATGCAGTTTTGAGGGGCCTAGGCTCGATTTCCCGGTGAAAAAGGTGTAAAGGACTCTCTATGGAATGCAGTTTTGAGGGGCCTAGGCTCGATTTCCCGGTGGAAAAGGCATAAAGGACTCTGTATGG
ATTCGATGGATGTGGGATTTTAAAGAGCCAAACGCTGTTTTTCGCGGGAAGAAGAGAAGGGTGGTTGTATTGGTCGTGGAAGCTTGTGAACTGGGTGAAAACATAGGAGGGGGGGATTGTCATGGCATTGCGGATAGAACCCAATTTTCCGCATTGCTCTGCAAGCAAATCAAATGGGGTTGTTTTACATCCATTAAGTA
GAAGAGGTTCTCTTTACAAGGCATGCTTTAAGGTCAAATATGTACCAAGTTGTATGGCCAATCTAAGGCAGAAAGATAGCAGCAGGTTTGGACTATCAAAGTTTGAAAAGTTATCACCTTTCTGTAATATGAAGCTGAAGTCATTTCAATCTATTATTGTATCAGCTGCTTCAGAAGATGGTATTGCTGTTAATAGGAGT
TCCAGTTCAAATTCTGATGGAGACTTGGAAAAAATGAGGCTAAAATTGAATCAATCTATTCGAGGGGAAGATGCCAGTAATGACCTGGTACAATGCCTGCATGATGCTGCACGGGTATTTGAACTAGCTATAGAGAAACAAGGTTCTTTAACACGGGGGCCCTTATTTTCAAAGGCTTGGCTTGGCATTGATAAGAATGC
TTGGGTTAAGACACTTTCATATCAGGCTTCTGTACATGCTCTATTACAAGCAGCCACTGAAATTGCATCACGAGGAGACGGCAGAGACAGAGAAGTTAATGTTTTTGTCCAGCGAAGTCTATTATGCCAATCTAGCCCATTGGAGAAGTCAATTAGAGATCAACTCTTTTCCAAGGACCCTGTGGCATGCGAATGGTTTT
GGTCCCAACAACATCCTGCTATTGTAACAAACTTTGTCAATATCTTAGAAAATGATCCACGCTTCACTGCTGTAACTTCGCTAGGATGGGAGGAAGCATCATTGAGTCCGAGTAGAGCATGTGATCTGTCTCTTCTTATGCTGGCACTGAGCAGTATAGCGGCAGTTATGAAACTTGGACCAGCCAAGGTTTCTTGCCCT
CAATTTTCTTCCACCTTATTAGAGATGAATGGTAAACTAATGGATACGCTGGCAGAATTGATTCCTATAGATCAAGTATATCACTTCACTTCTGAGGTGGGTCTACGGAGGGAGTTTCTTCTATACTTTGGTCCACGAGCTACTGCTTACAGGGGTAAAAATGATTTGTTGGGAGGAGAAGAAGGAGCATTTTGGGTTGA
TCTGGTTCAGCAACAACTCCGGGGAGCAATCCACAGGGAACGAATATGGTCAAGGTACTTGAAAGGGATCTGGCAATATTTGGATTTTTTATTGCTTTAGGCAGGAGGACTCAGTCTTACCTAGATGCCAATAACACTGATATGCTGGATGAGTCTCTTGAAAGCTTTCTAAGATATTTGGTTGGTGGCAGTGTTCTATT
TTATCCACAGCTTGCATCTGTGAGCACTTACCAGATGTTTGTGGAGGTGGTGTGTGAAGAGATGGACTGGCTACCATTCTATCCAGAAGGTTCAACAATGGGAAGGCAAGTGCAGGAAAACAGGAGGGTCCATCAAAGTGTATCAAAAATGGAAGCTGTCACATTAGCACTAGATGTTTGTTCCCATTGGATGCAGCACT
TCTTAAAATATAGTGTATGGTTAGAGAAACCTTCACATATTAAAGCAGCCAGATTCTTGTCTACTAGCCATAGTAAATTGGAGGAATGTAGGAATGCATTGTATATTTCAGCTACAGCTGCAGCTCCAAAATATGAAATGGGGAAAGGCATAGATGTTGGAGGAGAAAACAGATGGAGTTCAGGAGAGCAAACATCATCC
AAGGCGTATACTCGAATTGAGGAGATAAATTTGTTTGATAAGGAACTGCAGTGTGTTGATGAGGCTCTCAACAGGTTAGAAGGTTTGCTCAAGGAAATTCATGTTTGTAGCTCCAACTCGGACAAGGATTACTTAGAAGCAGCTTGTACAGATCTAGAAAGAATTCGAAAGTTGAAAAAAGAGGCAGAGTTTCTTGAAGC
ATCCTGGAGAGCAAAGGCAGCATCAGTGCAGCAGGGCATCGAAGATGAGTACTTCCAACCCCCTAAGTCTGAAAGAAGTAGTCAATCTAAAAATAGATCTGGCAAATTAGGGCAGGGGAATCAAAATGAAAAGGACAGTAAGGTTTCTCAAGGAAGAAGCGTAGAGAATGTTCCTCAGGGCTTGCGGAATTTTTTGTTAT
CCCATTCAAATACCAAAAAATGCGGGGATGAAGATCGAGCAATCAACATAGGTTCTACAGAAGATGGGGCATTTGAGCAGACTATTCCAAGACTAGAAGATGGAGCAACAGTTTCAAATGAGATTAGGCGATTTGAACAATTACAGAATGAGCTGTTTGAACTTGAGAGACGAGTTCAAGGAAATGCTGATGGATGTCTA
GATCAGAAGGGGTATTACAATAATAGCGATCAAGTTGCTAGCAGCTCATTAACAAGAAGTTCAGATTATAAATTAACTAAGGTGGAAAAGGAAGACAACATTCTGGGCAAATCCATTGGAAAGTTGAAAGAAGCTGGCTCGGATGTCTGGGAAGGTACTCGGCTTCTTGCTACAGATGTGGCTGTTGCAATGGGCTTCCT
ACAAAGAGCCTTAACGGGTGATGAGCTGACTGACAAGGAAAAGAAAACTCTTCGAAGGACTCTAACAGATATAGCTTCAGTTATACCAATCGGAATCCTCATGCTCCTTCCGGTTACAGCTGTTGGACATGCTGCTATGTTAGCTGCGATAAAAAGATACTTCCCTGCTATGATACCCTCTGCATATGCACGTGAGAGGT
TGGATTTGGTGAGGCAGTTAGAGAAGTTGCAGGAAATGGATGTTAGTGCATCAAACGTAGATGAAGAGAATGTAGAGATGCCGGAGGTGCAGATAAATGCTGTTGGCGATGATCCATGATGTGTCAGAGCACGAGTTAAATAGACCATCATAAACATTTGTCTTTCTGATAGAGCTAGAAGACAATGCGCACTGGTCGAT
TTCAACTCAAATTATACTGTAAAGTGAACAAGTTCCTTGCCTTATAATTGATTGCAACATATTTTTTTCTGTAAGATAAAACCGAAAAAAGACACTGTTTTATATCAAATTCCGCAATTCAGTTCCCCTTCCTCGGAAATGGAAGTGGATGTCAAATGTTCAATTTATACCATGTGTTGATATACAAATTCATTTTGAAA
TGTTCTCAATGGTGCTTTTCTCTCCAAATTTGGAAGTCCCATCAGAAGCACTGTACAAACATATACTCAGCAATGTAATAAT
>TRINITY_DN128422_c0_g2_i8 from sample A1 / Example unspliced isoform:GGCCATTTACGAGGCGTCAAATGATCCACATGTGAATTTAATTTTCCACCTCTCCACCTACGTGCAGAATCCATTGAGCCCAGTTCCTGTTATTATCCAAACATATATACATTGTTTATTTCTTTGAATAGATTGCGGAATTCAGCCATGCAATTTTGAGGGCCTGGGCTCGATTTCCCGGTGAAAAAGGCGTAAAGGAC
TCTGTATGGAATGCAGTTTTGAGGGCCTAGGCTCGATTTCCAGGTGAAAAAGGTGTAAAGGACTCTCTATGGAATGCAGTTTTGAGGGGCCTAGGCTCGATTTCCCGGTGAAAAAGGTGTAAAGGACTCTCTATGGAATGCAGTTTTGAGGGGCCTAGGCTCGATTTCCCGGTGGAAAAGGCATAAAGGACTCTGTATGG
ATTCGATGGATGTGGGATTTTAAAGAGCCAAACGCTGTTTTTCGCGGGAAGAAGAGAAGGGTGGTTGTATTGGTCGTGGAAGCTTGTGAACTGGGTGAAAACATAGGAGGGGGGGATTGTCATGGCATTGCGGATAGAACCCAATTTTCCGCATTGCTCTGCAAGCAAATCAAATGGGGTTGTTTTACATCCATTAAGTA
GAAGAGGTTCTCTTTACAAGGCATGCTTTAAGGTCAAATATGTACCAAGTTGTATGGCCAATCTAAGGCAGAAAGATAGCAGCAGGTTTGGACTATCAAAGTTTGAAAAGTTATCACCTTTCTGTAATATGAAGCTGAAGTCATTTCAATCTATTATTGTATCAGCTGCTTCAGAAGATGGTATTGCTGTTAATAGGAGT
TCCAGTTCAAATTCTGATGGAGACTTGGAAAAAATGAGGCTAAAATTGAATCAATCTATTCGAGGGGAAGATGCCAGTAATGACCTGGTACAATGCCTGCATGATGCTGCACGGGTATTTGAACTAGCTATAGAGAAACAAGGTTCTTTAACACGGGGGCCCTTATTTTCAAAGGCTTGGCTTGGCATTGATAAGAATGC
TTGGGTTAAGACACTTTCATATCAGGCTTCTGTACATGCTCTATTACAAGCAGCCACTGAAATTGCATCACGAGGAGACGGCAGAGACAGAGAAGTTAATGTTTTTGTCCAGCGAAGTCTATTATGCCAATCTAGCCCATTGGAGAAGTCAATTAGAGATCAACTCTTTTCCAAGGACCCTGTGGCATGCGAATGGTTTT
GGTCCCAACAACATCCTGCTATTGTAACAAACTTTGTCAATATCTTAGAAAATGATCCACGCTTCACTGCTGTAACTTCGCTAGGATGGGAGGAAGCATCATTGAGTCCGAGTAGAGCATGTGATCTGTCTCTTCTTATGCTGGCACTGAGCAGTATAGCGGCAGTTATGAAACTTGGACCAGCCAAGGTTTCTTGCCCT
CAATTTTCTTCCACCTTATTAGAGATGAATGGTAAACTAATGGATACGCTGGCAGAATTGATTCCTATAGATCAAGTATATCACTTCACTTCTGAGGTGGGTCTACGGAGGGAGTTTCTTCTATACTTTGGTCCACGAGCTACTGCTTACAGGGGTAAAAATGATTTGTTGGGAGGAGAAGAAGGAGCATTTTGGGTTGA
TCTGGTTCAGCAACAACTCCGGGGAGCAATCCACAGGGAACGAATATGGTCAAGgttgacaacatatgaaagcattgagGTACTTGAAAGGGATCTGGCAATATTTGGATTTTTTATTGCTTTAGGCAGGAGGACTCAGTCTTACCTAGATGCCAATAACACTGATATGCTGGATGAGTCTCTTGAAAGCTTTCTAAGAT
ATTTGGTTGGTGGCAGTGTTCTATTTTATCCACAGCTTGCATCTGTGAGCACTTACCAGATGTTTGTGGAGGTGGTGTGTGAAGAGATGGACTGGCTACCATTCTATCCAGAAGGTTCAACAATGGGAAGGCAAGTGCAGGAAAACAGGAGGGTCCATCAAAGTGTATCAAAAATGGAAGCTGTCACATTAGCACTAGAT
GTTTGTTCCCATTGGATGCAGCACTTCTTAAAATATAGTGTATGGTTAGAGAAACCTTCACATATTAAAGCAGCCAGATTCTTGTCTACTAGCCATAGTAAATTGGAGGAATGTAGGAATGCATTGTATATTTCAGCTACAGCTGCAGCTCCAAAATATGAAATGGGGAAAGGCATAGATGTTGGAGGAGAAAACAGATG
GAGTTCAGGAGAGCAAACATCATCCAAGGCGTATACTCGAATTGAGGAGATAAATTTGTTTGATAAGGAACTGCAGTGTGTTGATGAGGCTCTCAACAGGTTAGAAGGTTTGCTCAAGGAAATTCATGTTTGTAGCTCCAACTCGGACAAGGATTACTTAGAAGCAGCTTGTACAGATCTAGAAAGAATTCGAAAGTTGA
AAAAAGAGGCAGAGTTTCTTGAAGCATCCTGGAGAGCAAAGGCAGCATCAGTGCAGCAGGGCATCGAAGATGAGTACTTCCAACCCCCTAAGTCTGAAAGAAGTAGTCAATCTAAAAATAGATCTGGCAAATTAGGGCAGGGGAATCAAAATGAAAAGGACAGTAAGGTTTCTCAAGGAAGAAGCGTAGAGAATGTTCCT
CAGGGCTTGCGGAATTTTTTGTTATCCCATTCAAATACCAAAAAATGCGGGGATGAAGATCGAGCAATCAACATAGGTTCTACAGAAGATGGGGCATTTGAGCAGACTATTCCAAGACTAGAAGATGGAGCAACAGTTTCAAATGAGATTAGGCGATTTGAACAATTACAGAATGAGCTGTTTGAACTTGAGAGACGAGT
TCAAGGAAATGCTGATGGATGTCTAGATCAGAAGTACTGGTATCTTGACTTTGCAGGGGTATTACAATAATAGCGATCAAGTTGCTAGCAGCTCATTAACAAGAAGTTCAGATTATAAATTAACTAAGGTGGAAAAGGAAGACAACATTCTGGGCAAATCCATTGGAAAGTTGAAAGAAGCTGGCTCGGATGTCTGGGAA
GGTACTCGGCTTCTTGCTACAGATGTGGCTGTTGCAATGGGCTTCCTACAAAGAGCCTTAACGGGTGATGAGCTGACTGACAAGGAAAAGAAAACTCTTCGAAGGACTCTAACAGATATAGCTTCAGTTATACCAATCGGAATCCTCATGCTCCTTCCGGTTACAGCTGTTGGACATGCTGCTATGTTAGCTGCGATAAA
AAGATACTTCCCTGCTATGATACCCTCTGCATATGCACGTGAGAGGTTGGATTTGGTGAGGCAGTTAGAGAAGTTGCAGGAAATGGATGTTAGTGCATCAAACGTAGATGAAGAGAATGTAGAGATGCCGGAGGTGCAGATAAATGCTGTTGGCGATGATCCATGATGTGTCAGAGCACGAGTTAAATAGACCATCATAA
ACATTTGTCTTTCTGATAGAGCTAGAAGACAATGCGCACTGGTCGATTTCAACTCAAATTATACTGTAAAGTGAACAAGTTCCTTGCCTTATAATTGATTGCAACATATTTTTTTCTGTAAGATAAAACCGAAAAAAGACACTGTTTTATATCAAATTCCGCAATTCAGTTCCCCTTCCTCGGAAATGGAAGTGGATGTC
AAATGTTCAATTTATACCATGTGTTGATATACAAATTCATTTTGAAATGTTCTCAATGGTGCTTTTCTCTCCAAATTTGGAAGTCCCATCAGAAGCACTGTACAAACATATACTCAGCAATGTAATAAT
Intron 6 GTACTTGAAA ... TGTCTACTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 72.5 | 22 | 73 | 43 |
| A2 | 58.08 | 35 | 72 | 25 |
| A3 | 73.08 | 21 | 71 | 43 |
| A4 | 72.8 | 17 | 50 | 41 |
| A5 | 63.64 | 14 | 29 | 20 |
| A6 | 60 | 3 | 6 | 3 |
| A7 | 75.47 | 26 | 88 | 72 |
| A8 | 64.1 | 21 | 47 | 28 |
| A9 | 72.63 | 26 | 80 | 58 |
| A10 | 72.02 | 27 | 84 | 55 |
>TRINITY_DN117276_c2_g1_i1 from sample A3 / Example spliced isoformATTTACGAGGCGTCAAATGATCCACATGTGAATTTAATTTTCCACCTCTCCACCTACGTGCAGAATCCATTGAGCCCAGTTCCTGTTATTATCCAAACATATATACATTGTTTATTTCTTTGAATAGATTGCGGAATTCAGCCATGCAATTTTGAGGGCCTGGGCTCGATTTCCCGGTGAAAAAAGGCGTAAAGGACTCT
GTATGGAATGCAGTTTTGAGGGCCTAGGCTCGATTTCCAGGTGAAAAAGGTGTAAAGGACTCTCTATGGAATGCAGTTTTGAGGGGCCTAGGCTCGATTTCCCGGTGGAAAAGGCATAAAGGACTCTGTATGGATTCGATGGATGTGGGATTTTAAAGAGCCAAACGCTGTTTTTCGCGGGAAGAAGAGAAGGGTGGTTG
TATTGGTCGTGGAAGCTTGTGAACTGGGTGAAAACATAGGAGGGGGGGATTGTCATGGCATTGCGGATAGAACCCAATTTTCCGCATTGCTCTGCAAGCAAATCAAATGGGGTTGTTTTACATCCATTAAGTAGAAGAGGTTCTCTTTACAAGGCATGCTTTAAGGTCAAATATGTACCAAGTTGTATGGCCAATCTAAG
GCAGAAAGATAGCAGCAGCTGCTTCAGAAGATGGTATTGCTGTTAATAGGAGTTCCAGTTCAAATTCTGATGGAGACTTGGAAAAAATGAGGCTAAAATTGAATCAATCTATTCGAGGGGAAGATGCCAGTAATGACCTGGTACAATGCCTGCATGATGCTGCACGGGTATTTGAACTAGCTATAGAGAAACAAGGTTCT
TTAACACGGGGGCCCTTATTTTCAAAGGCTTGGCTTGGCATTGATAAGAATGCTTGGGTTAAGACACTTTCATATCAGGCTTCTGTACATGCTCTATTACAAGCAGCCACTGAAATTGCATCACGAGGAGACGGCAGAGACAGAGAAGTTAATGTTTTTGTCCAGCGAAGTCTATTATGCCAATCTAGCCCATTGGAGAA
GTCAATTAGAGATCAACTCTTTTCCAAGGACCCTGTGGCATGCGAATGGTTTTGGTCCCATCAACATCCTGCTATTGTAACAAACTTTGTCAATATCTTAGAAAATGATCCACGCTTCACTGCTGTAACTTCGCTAGGATGGGAGGAAGCATCATTGAGTCCGAGTAGAGCATGTGATCTGTCTCTTCTTATGCTGGCAC
TGAGCAGTATAGCGGCAGTTATGAAACTTGGACCAGCCAAGGTTTCTTGCCCTCAATTTTCTTCCACCTTATTAGAGATGAATGGTAAACTAATGGATACGCTGGCAGAATTGATTCCTATAGATCAAGTATATCACTTCACTTCTGAGGTGGGTCTACGGAGGGAGTTTCTTCTATACTTTGGTCCACGAGCTACTGCT
TACAGGGGTAAAAATGATTTGTTGGGAGGAGAAGAAGGAGCATTTTGGGTTGATCTGGTTCAGCAACAACTCCGGGGAGCAATCCACAGGGAACGAATATGGTCAAGGTTGACAACATATGAAAGCATTGAGCCATAGTAAATTGGAGGAATGTAGGAATGCATTGTATATTTCAGCTACAGCTGCAGCTCCAAAATATG
AAATGGGGAAAGGCATAGATGTTGGAGGAAAAAACAGATGGAG
>TRINITY_DN117276_c2_g1_i11 from sample A3 / Example unspliced isoform:ATTTACGAGGCGTCAAATGATCCACATGTGAATTTAATTTTCCACCTCTCCACCTACGTGCAGAATCCATTGAGCCCAGTTCCTGTTATTATCCAAACATATATACATTGTTTATTTCTTTGAATAGATTGCGGAATTCAGCCATGCAATTTTGAGGGCCTGGGCTCGATTTCCCGGTGAAAAAGGCGTAAAGGACTCTG
TATGGAATGCAGTTTTGAGGGCCTAGGCTCGATTTCCAGGTGAAAAAGGTGTAAAGGACTCTCTATGGAATGCAGTTTTGAGGGGCCTAGGCTCGATTTCCCGGTGGAAAAGGCATAAAGGACTCTGTATGGATTCGATGGATGTGGGATTTTAAAGAGCCAAACGCTGTTTTTCGCGGGAAGAAGAGAAGGGTGGTTGT
ATTGGTCGTGGAAGCTTGTGAACTGGGTGAAAACATAGGAGGGGGGGATTGTCATGGCATTGCGGATAGAACCCAATTTTCCGCATTGCTCTGCAAGCAAATCAAATGGGGTTGTTTTACATCCATTAAGTAGAAGAGGTTCTCTTTACAAGGCATGCTTTAAGGTCAAATATGTACCAAGTTGTATGGCCAATCTAAGG
CAGAAAGATAGCAGCAGGTTTGGACTATCAAAGTTTGAAAAGTTATCACCTTTCTGTAATATGAAGCTGAAGTCATTTCAATCTATTATTGTATCAGCTGCTTCAGAAGATGGTATTGCTGTTAATAGGAGTTCCAGTTCAAATTCTGATGGAGACTTGGAAAAAATGAGGCTAAAATTGAATCAATCTATTCGAGGGGA
AGATGCCAGTAATGACCTGGTACAATGCCTGCATGATGCTGCACGGGTATTTGAACTAGCTATAGAGAAACAAGGTTCTTTAACACGGGGGCCCTTATTTTCAAAGGCTTGGCTTGGCATTGATAAGAATGCTTGGGTTAAGACACTTTCATATCAGGCTTCTGTACATGCTCTATTACAAGCAGCCACTGAAATTGCAT
CACGAGGAGACGGCAGAGACAGAGAAGTTAATGTTTTTGTCCAGCGAAGTCTATTATGCCAATCTAGCCCATTGGAGAAGTCAATTAGAGATCAACTCTTTTCCAAGGACCCTGTGGCATGCGAATGGTTTTGGTCCCATCAACATCCTGCTATTGTAACAAACTTTGTCAATATCTTAGAAAATGATCCACGCTTCACT
GCTGTAACTTCGCTAGGATGGGAGGAAGCATCATTGAGTCCGAGTAGAGCATGTGATCTGTCTCTTCTTATGCTGGCACTGAGCAGTATAGCGGCAGTTATGAAACTTGGACCAGCCAAGGTTTCTTGCCCTCAATTTTCTTCCACCTTATTAGAGATGAATGGTAAACTAATGGATACGCTGGCAGAATTGATTCCTAT
AGATCAAGTATATCACTTCACTTCTGAGGTGGGTCTACGGAGGGAGTTTCTTCTATACTTTGGTCCACGAGCTACTGCTTACAGGGGTAAAAATGATTTGTTGGGAGGAGAAGAAGGAGCATTTTGGGTTGATCTGGTTCAGCAACAACTCCGGGGAGCAATCCACAGGGAACGAATATGGTCAAGGTTGACAACATATG
AAAGCATTGAGgtacttgaaagggatctggcaatatttggattttttattgctttaggcaggaggactcagtcttacctagatgccaataacactgatatgctggatgagtctcttgaaagctttctaagatatttggttggtggcagtgttctattttatccacagcttgcatctgtgagcacttaccagatgtttgtg
gaggtggtgtgtgaagagatggactggctaccattctatccagaaggttcaacaatgggaaggcaagtgcaggaaaacaggagggtccatcaaagtgtatcaaaaatggaagctgtcacattagcactagatgtttgttcccattggatgcagcacttcttaaaatatagtgtatggttagagaaaccttcacatattaa
agcagccagattcttgtctactagCCATAGTAAATTGGAGGAATGTAGGAATGCATTGTATATTTCAGCTACAGCTGCAGCTCCAAAATATGAAATGGGGAAAGGCATAGATGTTGGAGGAGAAAACAGATGGAGTTCAGGAGAGCAAACATCATCCAAGGCGTATACTCGAATTGAGGAGATAAATTTGTTTGATAAGG
AACTGCAGTGTGTTGATGAGGCTCTCAACAGGTTAGAAGGTTTGCTCAAGGAAATTCATGTTTGTAGCTCCAACTCGGACAAGGATTACTTAGAAGCAGCTTGTACAGATCTAGAAAGAATTCGAAAGTTGAAAAAAGAGGCAGAGTTTCTTGAAGCATCCTGGAGAGCAAAGGCAGCATCAGTGCAGCAGGGCATCGAA
GATGAGTACTTCCAACCCCCTAAGTCTGAAAGAAGTAGTCAATCTAAAAATAGATCTGGCAAATTAGGGCAGGGGAATCAAAATGAAAAGGACAGTAAGGTTTCTCAAGGAAGAAGCGTAGAGAATGTTCCTCAGGGCTTGCGGAATTTTTTGTTATCCCATTCAAATACCAAAAAATGCGGGGATGAAGATCGAGCAAT
CAACATAGGTTCTACAGAAGATGGGGCATTTGAGCAGACTATTCCAAGACTAGAAGATGGAGCAACAGTTTCAAATGAGATTAGGCGATTTGAACAATTACAGAATGAGCTGTTTGAACTTGAGAGACGAGTTCAAGGAAATGCTGATGGATGTCTAGATCAGAAGGGGTATTACAATAATAGCGATCAAGTTGCTAGCA
GCTCATTAACAAGAAGTTCAGATTATAAATTAACTAAAGTGGAAAAGGAAGACAACATTCTGGGCAAATCCATTGGAAAGTTGAAAGAAGCTGGCTCGGATGTCTGGGAAGGTACTCGGCTTCTTGCTACAGATGTGGCTGTTGCAATGGGCTTCCTACAAAGAGCCTTAACGGGTGATGAGCTGACTGACAAGGAAAAG
AAAACTCTTCGAAGGACTCTAACAGATATAGCTTCAGTTATACCAATCGGAATCCTCATGCTCCTTCCGGTTACAGCTGTTGGACATGCTGCTATGTTAGCTGCGATAAAAAGATACTTCCCTGCTATGATACCCTCTGCATATGCACGTGAGAGGTTGGATTTGGTGAGGCAGTTAGAGAAGTTGCAGGAAATGGATGT
TAGTGCATCAAACGTAGATGAAGAGAATGTAGAGATGCCGGAGGTGCAGATAAATGCTGTTGGCGATGATCCATGATGTGTCAGAGCACGAGTTAAATAGACCATCATAAACATTTGTCTTTCTGATAGAGCTAGAAGACAATGCGCACTGGTCGATTTCAACTCAAATTATACTGTAAAGTGAACAAGTTCCTTGCCTT
ATAATTGATTGCAACATATTTTTTTCTGTAAGATAAAACCGAAAAAAGACACTGTTTTATATCAAATTCCGCAATTCAGTTCCCCTTCCTCGGAAATGGAAGTGGATGTCAAATGTTCAATTTATACCATGTGTTGATATACAAATTCATTTTGAAATGTTCTCAATGGTGCTTTTCTCTCCAAATTTGGAAGTCCCATC
AGAAGCACTGTACAAACATATACTCAGCAATGTAATAATGTGCAAGTAATAATCAAAATTTTATCTTGTTTATTTCTTCCTCAAAGGTACTTCAATAATGCAAAGCTTGAATTGCTGGATAAACCTTGTTAACTGGTTGTCGTACAAGTGTTGAACGCAATTTCTCCACCTTGGTTGCACC