sp|Q9SR71|TAF12_ARATH ----> Transcription initiation factor TFIID subunit 12
Intron 1 GTAAGAATCT ... TTGCGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40.57 | 70 | 13 | 56.2 |
| A2 | 42.34 | 55.8 | 4.8 | 49.7 |
| A3 | 23.86 | 72 | 14 | 32.7 |
| A4 | 47.87 | 31 | 7.8 | 32.7 |
| A5 | 39.61 | 24 | 7 | 18.7 |
| A6 | 31.94 | 126 | 13.7 | 84.7 |
| A7 | 35.82 | 285.2 | 39.2 | 203.2 |
| A8 | 31.83 | 336.2 | 44.7 | 203.8 |
| A9 | 32.43 | 241.8 | 30.2 | 160.8 |
| A10 | 34.77 | 215.8 | 46.8 | 153.7 |
>TRINITY_DN132742_c0_g3_i7 from sample A1 / Example spliced isoformGTTAAGCATATAGATCCATAGATAAATCGCCCTTATGTGAGGTCTGCGAGATTTTGGTTGTGGCGGGTAGTTGTTCTCTCTATTCCTTCATTCAGTTAATGGAAGGAAGTTGTTTATTTCATCATAGTTGGGTTTTTATTTCACTTGCCTTTTAACACCAGCAGACTTCTTTCCCTGTTGGTGGAATTGGGAGGTGGAGG
CCACTGGGTTTCTGGAGTTCAATCAATTCAGATGTAAAATGTGAAGGGGAGGCTTGCTATTAGGGGAGGCAGTAAAGGCACCGGTGCTTGAATTTCAAATATATTTATATTAGATAATAAAAATGGAAGGGGAAACTGGTTCGTCATCTCAACAAGGGAGTGCTAGTATTTTGCCGTCTGCAGCATCCGCCCCTTCAGTG
GTGACACCATCCACAGGGGGAGGGGGAGGGACAACTAATGCAATGGGAGTACCGACACCCAATGTGGTTTCTGCCCAACAAAACCTTCCTCAGCAGCAGCCGAGTGCAGTGGGCAGCGGTAGAGAACCCAGTGTTGTTGCGCCCCCTCCTATTGGGGTGCAACAACAACAGCCCAATGCAGCGTCCTCTTCAGGGGGGCA
TCAGATGCACCCAAACATGGTGACATCATCTCCCGGCCAACCCAATTTTCAAGCAGGCCAACCGAGGCCTGGAGTGACATCAAATAGGGGCAGGCAGCAGCAGCCATCTCCTTATTCACATTTCTCATCTCTGGCGCCATCAACTGCAATGCACCAGCAGCAGAGAGGGGGCGGCCCACTGCAAGGAGGCATGGGTACCC
AGCAGAGGCCCCCGGCACTTGGAACATCCTATGCACATAATATGCAACAGCATCCAAGGGGAAGCATGATTGGACAACCTCAGGGCACTGGCCATCCTCCCATGGCCCCTTCTGGACAAACAGATCAACTTTCGAATATACAATCGCCATACACATCTCACCAGTCACGACAGAAACAAGGATCCATTCAGGGTACTTCA
TTTCAACATTCAGTATCTTCAGGGCAGACATTGCCAGGCATGCAAACAATTGGTACAGTTGGCTCTCCTGCTGTTGGCCCTCAGATCAGACCCTCTGGAGTTTTTGGCCATAGTCAGCAAAGGCCTGGTCAAGGACAATTAAGGTCACAGTCTCCATCACAACATCAATCGCTAGCCTCTCAGAAGATGCAGGTGCAAAA
CTTGCAGAGAATGCCATCCATGGGATCAATGAACTCTCAATTGCCTGGTATTTCCCAAGGTGGACAGTCCGGTGCACCCTCTAGCACACTTCCCCATCAGCAACAGTGGATGCCGACTCAAGGAAAACAAATGCACCCATCCAGTATACCTTTAACTTCACCTTCCTACCAATCACATCTTAAGCAGCAAGGTCTGCCAC
AGAGGTCACAACACACTCAACCACAGCAGCAGTCACTTCCATTGACACAGCAGCAGCAACTCCATCAGTTGCAGGAGCAACATTCTCAACAATATCAACAGCAACGAATACCACAGCCTTTGCACAGTGTACAACAACAACAACAGATGCCCCGAACATCAGGGATGGCAATTCAAAAGCCCTCCACATCAGCAGGAGCC
CAAGTTTCTGGTATACTGGCATCAGGAAATACAATCCCAGCTGGAAGTAATGATCAAGCAACTGAAGCAAGTAATCGGATGATTGGGAAGAGAAGCGTCCGAGAGTTAGTTGCCCAGATTGACCCTAGTGAGAAGCTAGACTCTGAAGTTGAAGATATTCTCATAGAGATAGCAGAAGATTTTGTTGATAAAGTGACCAA
CTTTTCTTGTTGTTTGGCAAAACATCGAAAATCAGAAACACTGGAACCCAAGGATATATTACTACATTTAGAAAGGAATTGGAATATGACAATTCCTGGCTTTGCTGGTGATGAATACAGGATCTACAAGAGGCCGTCTGTGAACGAGAATCACAAGCAACGGCTTTCTGTGATTCGGAAGTCAGCTGCAACTTCACAGA
CGGGAACTGAAACAGGAAATACTAAAGAGTCTACAGGACAAGTTACTGGGAATGCTAATTCTAAAGCTACAACAACAAAGGGATTGCGTGAAGTATCTGGTGCACAAGAAAATTCATGATTGTACTTTGTTTTCAGGCGAAGGTAGGAGGGCCTATGGTGGATTGGTTCAGCTACATGACATAAAAATGCTTTCTAATAT
CAAGGTTGTAATGAAGTTTTTGAAACAGGACACTGCCAGTTCTATCACGGGTAAGTCCTATTCATTTTGTACATTGCCTCTTGATTTGACCTCTATAGACTAAAGAGCAACAATAAAGGTCCTCGTACTAAAAGTGGGCCTCCTGTGGCTTTTTTCTTTTCTTTGAAAGCATGGGTTTGACCACTGTTCCCTTGTAGCTG
GACTGTTTATTGTACAAATATTCTTGAAAGTTCTATAAAAGCATGGGTCGCACCATTGTTCCCTTGTAGCTGGACTATTTTTTGCACAAATGCTCAGAGATTCTTGATGGTATAATTTGTGGAGGTTCATCACTTTCTGAGCTGTGACTTCAACATGACGAACTTGGGAATATTGGAAATGTTCTTTTCTACGACCACAT
GATAAGCAATGTCTTAGAACATTAAAATCGGGATTTTATCCTTAAAAGACAAGGGACAAATAAGAGCATTGCATTTAATTTATTTAGCATGGAAGAGCATGTAAAATTCCGACGTTAAATCTTTTTCTCATCCACTGAAGATATAGATCAGTATTATTTCTTGACAAAATACAAGTGCTTAGTGCTTAGAGTTGTACTTT
GTTTCATATGTGGAGCGCTTCAATTTGTTTTAGTGTATGCAGTTTAATTGCCATTATTATACCCCTGTTTTAGTGGTGGGAGTTGCTGTGAAAACATAGCTTCCGAACTATTCAAGCATGGTTACAGAATGGAGTATCTGTGCTTTCTGATATATAAAACTTTGATTGTGTTAGTTCTGTAATGACGTGCTTGCTCAAAT
CTTTTCTGCAC
>TRINITY_DN132742_c0_g3_i12 from sample A1 / Example unspliced isoform:GTTAAGCATATAGATCCATAGATAAATCGCCCTTATGTGAGGTCTGCGAGATTTTGGTTGTGGCGGGTAGTTGTTCTCTCTATTCCTTCATTCAGTTAATGGAAGGAAGTTGTTTATTTCATCATAGTTGGGTTTTTATTTCACTTGCCTTTTAACACCAGCAGACTTCTTTCCCTGTTGGTGGAATTGGGAGGTGGAGG
CCACTGGGTTTCTGGAGTTCAATCAATTCAGATGTAAAATGTGAAGGGGAGGCTTGCTATTAGGGGAGGCAGTAAAGGCACCGGTGCTTGAATTTCAAATATATTTATATTAGATAATAAAAATGGAAGGGGAAACTGGTTCGTCATCTCAACAAGGGAGTGCTAGTATTTTGCCGTCTGCAGCATCCGCCCCTTCAGTG
GTGACACCATCCACAGGGGGAGGGGGAGGGACAACTAATGCAATGGGAGTACCGACACCCAATGTGGTTTCTGCCCAACAAAACCTTCCTCAGCAGCAGCCGAGTGCAGTGGGCAGCGGTAGAGAACCCAGTGTTGTTGCGCCCCCTCCTATTGGGGTGCAACAACAACAGCCCAATGCAGCGTCCTCTTCAGGGGGGCA
TCAGATGCACCCAAACATGGTGACATCATCTCCCGGCCAACCCAATTTTCAAGCAGGCCAACCGAGGCCTGGAGTGACATCAAATAGGGGCAGGCAGCAGCAGCCATCTCCTTATTCACATTTCTCATCTCTGGCGCCATCAACTGCAATGCACCAGCAGCAGAGAGGGGGCGGCCCACTGCAAGGAGGCATGGGTACCC
AGCAGAGGCCCCCGGCACTTGGAACATCCTATGCACATAATATGCAACAGCATCCAAGGGGAAGCATGATTGGACAACCTCAGGGCACTGGCCATCCTCCCATGGCCCCTTCTGGACAAACAGATCAACTTTCGAATATACAATCGCCATACACATCTCACCAGTCACGACAGAAACAAGGATCCATTCAGGGTACTTCA
TTTCAACATTCAGTATCTTCAGGGCAGACATTGCCAGGCATGCAAACAATTGGTACAGTTGGCTCTCCTGCTGTTGGCCCTCAGATCAGACCCTCTGGAGTTTTTGGCCATAGTCAGCAAAGGCCTGGTCAAGGACAATTAAGGTCACAGTCTCCATCACAACATCAATCGCTAGCCTCTCAGAAGATGCAGGTGCAAAA
CTTGCAGAGAATGCCATCCATGGGATCAATGAACTCTCAATTGCCTGGTATTTCCCAAGGTGGACAGTCCGGTGCACCCTCTAGCACACTTCCCCATCAGCAACAGTGGATGCCGACTCAAGGAAAACAAATGCACCCATCCAGTATACCTTTAACTTCACCTTCCTACCAATCACATCTTAAGCAGCAAGGTCTGCCAC
AGAGGTCACAACACACTCAACCACAGCAGCAGTCACTTCCATTGACACAGCAGCAGCAACTCCATCAGTTGCAGGAGCAACATTCTCAACAATATCAACAGCAACGAATACCACAGCCTTTGCACAGTGTACAACAACAACAACAGATGCCCCGAACATCAGGGATGGCAATTCAAAAGCCCTCCACATCAGCAGGAGCC
CAAGTTTCTGGTATACTGGCATCAGGAAATACAATCCCAGCTGGAAGTAATGATCAAGCAACTGAAGCAAGTAATCGGATGATTGGGAAGAGAAGCGTCCGAGAGTTAGTTGCCCAGATTGACCCTAGTGAGAAGCTAGACTCTGAAGTTGAAGATATTCTCATAGAGATAGCAGAAGATTTTGTTGATAAAGTGACCAA
CTTTTCTTGTTGTTTGGCAAAACATCGAAAATCAGAAACACTGGAACCCAAGGATATATTACTACATTTAGAAAGGAATTGGAATATGACAATTCCTGGCTTTGCTGGTGATGAATACAGGATCTACAAGAGGCCGgtaagaatctctctcggattatctcctcgaggacagcacaatgatgaacatgttttgcatatca
acatattcttgagcactgtgaaattataactagcaagtgacactgattttaagttccaatatgttcctagcatgcaataaaatgcaatgctatccatgttctttacctaaatggccttcctggaagttgacttgagggaaatggtagtgtcctaggaagcattggtctacttatttaagaccttagtgttatgcaggaaa
cttctcgttctttgcctgggaataaaaatatctgatcacgtgcattttactgattggttgtgggggattgcgtgcagTCTGTGAACGAGAATCACAAGCAACGGCTTTCTGTGGTATATAACTCAGTGACATTTTCTTTGTATCCTTTACGCCTTTTTCTATCAGCACTTTTGGTTTCTAACATGGCTTCTATTTTTCTC
TCATCATAGATAGTTTGCTGTCTTTGTAAGTTTATACTGAAAAGGACTTTTGTAAGAGAGATTAGTTGGATTACTAGTAATGGTTGTAGTCCATATGGTGATTCTTAGTTTTTTTTTTTTCTTTCTTTCAGATTCGGAAGTCAGCTGCAACTTCACAGACGGGAACTGAAACAGGAAATACTAAAGAGTCTACAGGACAA
GTTACTGGGAATGCTAATTCTAAAGCTACAACAACAAAGGGATTGCGTGAAGTATCTGGTGCACAAGAAAATTCATGATTGTACTTTGTTTTCAGGCGAAGGTAGGAGGGCCTATGGTGGATTGGTTCAGCTACATGACATAAAAATGCTTTCTAATATCAAGGTTGTAATGAAGTTTTTGAAACAGGACACTGCCAGTT
CTATCACGGGTAAGTCCTATTCATTTTGTACATTGCCTCTTGATTTGACCTCTATAGACTAAAGAGCAACAATAAAGGTCCTCGTACTAAAAGTGGGCCTCCTGTGGCTTTTTTCTTTTCTTTGAAAGCATGGGTTTGACCACTGTTCCCTTGTAGCTGGACTGTTTATTGTACAAATATTCTTGAAAGTTCTATAAAAG
CATGGGTCGCACCATTGTTCCCTTGTAGCTGGACTATTTTTTGCACAAATGCTCAGAGATTCTTGATGGTATAATTTGTGGAGGTTCATCACTTTCTGAGCTGTGACTTCAACATGACGAACTTGGGAATATTGGAAATGTTCTTTTCTACGACCACATGATAAGCAATGTCTTAGAACATTAAAATCGGGATTTTATCC
TTAAAAGACAAGGGACAAATAAGAGCATTGCATTTAATTTATTTAGCATGGAAGAGCATGTAAAATTCCGACGTTAAATCTTTTTCTCATCCACTGAAGATATAGATCAGTATTATTTCTTGACAAAATACAAGTGCTTAGTGCTTAGAGTTGTACTTTGTTTCATATGTGGAGCGCTTCAATTTGTTTTAGTGTATGCA
GTTTAATTGCCATTATTATACCCCTGTTTTAGTGGTGGGAGTTGCTGTGAAAACATAGCTTCCGAACTATTCAAGCATGGTTACAGAATGGAGTATCTGTGCTTTCTGATATATAAAACTTTGATTGTGTTAGTTCTGTAATGACGTGCTTGCTCAAATCTTTTCTGCAC
Intron 2 GTAGGAGGGC ... TTTGAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60.33 | 83.5 | 152.6 | 100 |
| A2 | 64.5 | 35.4 | 66 | 61.8 |
| A3 | 65.12 | 39.3 | 85.5 | 60.5 |
| A4 | 61.06 | 34.3 | 60 | 47 |
| A5 | 71.39 | 13.1 | 25 | 40 |
| A6 | 64.05 | 125.1 | 220 | 224.1 |
| A7 | 63.75 | 179.6 | 313.5 | 316 |
| A8 | 68.81 | 215.1 | 448 | 496.8 |
| A9 | 64.39 | 181.1 | 331.5 | 321 |
| A10 | 64.09 | 134.9 | 267.3 | 213 |
>TRINITY_DN121354_c1_g1_i3 from sample A3 / Example spliced isoformTCATGCTATGCAACCAGCGAGGTTGTACCATCATACCACAAATTTTTGAAGAAGTTAAGCATATAGATCCATAGATAAATCGCCCTTATGTGAGGTCTGCGAGATTATGGTTGTGGCGGGTAGTTGTTCTCTCTATTCCTTCATTCAGTTAATGGAAGGAAGTTGTTTATTTCATCATAGTTGGGTTTTTATTTCACTTG
CCTTTTAACACCAGCAGACTTCTTTCCCTGTTGGTGGAATTGGGAGGTGGAGGCCATTGGGTTTCTGGAGTTCAATCAATTCAGATGTAAAATGTGAAGGGGAGGCTTGCTATTAGGGGAGGCAGTCAAGGCACCGGTGCTTGAATTTCAAATATATTTATATTAGATAATAAAAATGGAAGGGGAAACTGGTTCGTCAT
CTCAACAAGGGAGTGCTAGTATTTTGCCGTCTGCAGCATCCGCCCCTTCAGTGGTGACACCATCCACAGGGGGAGGGGGAGGGACAACTAATGCAATGGGAGTACCGACACCCAATGTGGTTTCTGCCCAACAAAACCTTCCTCAGCAGCAGCCGAGTGCAGTGGGCAGCGGTAGAGAACCCAGTGTTGTTGCGCCCCCT
CCTATTGGGGTGCAACAACAACAGCCCAATGCAGCGTCCTCTTCAGGGGGGCATCAGATGCACCCAAACATGGTGACATCATCTCCCGGCCAACCCAATTTTCAAGCAGGCCAATCGAGGCCTGGAGTGACATCAAATAGGGGCAGGCAGCAGCAGCCATCACCTTATTCACATTTCTCATCTCTGGCGCCATCAACTGC
AATGCACCAGCAGCAGAGAGGGGGCGGCCCACTGCAAGGAGGCATGGGTACCCAGCAGAGGCCCCCGGCACTTGGAACATCCTATGCACATAATATGCAACAGCATCCAAGGGGAAGCATGATTGGACAACCTCAGGGCACTGGCCATCCTCCCATGGCCCCTTCTGGACAAACAGATCAACTTTCGAATATACAATCGC
CATACACATCTCACCAGTCACGACAGAAACAAGGATCCATTCAGGGTACTTCATTTCAACATTCAGTATCTTCAGGGCAGACATTGCCAGGCATGCAAACAATTGGTACAGTTGGCTCTCCTGCTGTTAGCCCTCAGATCAGACCCTCTGGAGTTTTTGGCCATAGTCAGCAAAGGCCTGGTCAAGGACAATTAAGGTCA
CAGTCTCCATCACAACATCAATCTCTAGCCTCTCAGAAGATGCATGTGCAAAACTTGCAGAGAATGCCATCCATGGGATCAATGAACTCTCAATTGCCTGGTATTTCCCAAGGTGGACAGTCCGGTGCACCCTCTAGCGCACTTCCCCATCAGCAACAGTGGATGCCGACTCAAGGAAAACAAATGCACCCATCCAGTAT
ACCTTTAACTTCACCTTCCTACCAATCACATCTTAAGCAGCAAGGTCTGCCACAGAGGTCACAACACACTCAACCACAGCAGCAGTCACTTCCATTGACACAGCAGCAGCAACTCCATCAGTTGCAGGAGCAACATTCTCAACAATATCAACAGCAACGAATACCACAGCCTTTGCACAGTGTACAACAACAACAACAGA
TGCCCCGAACATCAGGGATGGCAATTCAAAAGCCCTCCACATCAGCAGGAGCCCAAGTTTCTGGTATACCGGCATCAGGAAATACAATCCCAGCTGGAAGTAATGATCAAGCAACTGAAGCAAGTAATCGGATGATTGGGAAGAGAAGCGTCCGAGAGTTAGTTGCCCAGATTGACCCTAGTGAGAAGCTAGACTCTGAA
GTTGAAGATATTCTCATAGAGATAGCAGAAGATTTTGTTGATAAAGTGACCAACTTTTCTTGTTGTTTGGCAAAACATCGAAAATCAGAAACACTGGAACCCAAGGATATATTACTACATTTAGAAAGGAATTGGAATATGACAATTCCTGGCTTTGCTGGTGATGAATACAGGATCTACAAGAGGCCGGAAACTTCTCG
TTCTTTGCCTGGGAATAAAAATATCTGATCACGTGCATTTTACTGATTGGTTGTGGGGGATTGCGTGCAGTCTGTGAACGAGAATCACAAGCAACGGCTTTCTGTGATTCGGAAGTCAGCTGCAACTTCACAGACGGGAACTGAAACAGGAAATACTAAAGAGTCTACAGGACAAGTTACTGGGAATGCTAATTCTAAAG
CTACAACAACAAAGGGATTGCGTGAAGTATCTGGTGCACAAGAAAATTCATGATTGTACTTTGTTTTCAGGCGAAGGAATCTGCCAGTTCCATCACGGCTGGACTATTTTTTGCACAAAT
>TRINITY_DN121354_c1_g1_i6 from sample A3 / Example unspliced isoform:TCATGCTATGCAACCAGCGAGGTTGTACCATCATACCACAAATTTTTGAAGAAGTTAAGCATATAGATCCATAGATAAATCGCCCTTATGTGAGGTCTGCGAGATTATGGTTGTGGCGGGTAGTTGTTCTCTCTATTCCTTCATTCAGTTAATGGAAGGAAGTTGTTTATTTCATCATAGTTGGGTTTTTATTTCACTTG
CCTTTTAACACCAGCAGACTTCTTTCCCTGTTGGTGGAATTGGGAGGTGGAGGCCATTGGGTTTCTGGAGTTCAATCAATTCAGATGTAAAATGTGAAGGGGAGGCTTGCTATTAGGGGAGGCAGTCAAGGCACCGGTGCTTGAATTTCAAATATATTTATATTAGATAATAAAAATGGAAGGGGAAACTGGTTCGTCAT
CTCAACAAGGGAGTGCTAGTATTTTGCCGTCTGCAGCATCCGCCCCTTCAGTGGTGACACCATCCACAGGGGGAGGGGGAGGGACAACTAATGCAATGGGAGTACCGACACCCAATGTGGTTTCTGCCCAACAAAACCTTCCTCAGCAGCAGCCGAGTGCAGTGGGCAGCGGTAGAGAACCCAGTGTTGTTGCGCCCCCT
CCTATTGGGGTGCAACAACAACAGCCCAATGCAGCGTCCTCTTCAGGGGGGCATCAGATGCACCCAAACATGGTGACATCATCTCCCGGCCAACCCAATTTTCAAGCAGGCCAATCGAGGCCTGGAGTGACATCAAATAGGGGCAGGCAGCAGCAGCCATCACCTTATTCACATTTCTCATCTCTGGCGCCATCAACTGC
AATGCACCAGCAGCAGAGAGGGGGCGGCCCACTGCAAGGAGGCATGGGTACCCAGCAGAGGCCCCCGGCACTTGGAACATCCTATGCACATAATATGCAACAGCATCCAAGGGGAAGCATGATTGGACAACCTCAGGGCACTGGCCATCCTCCCATGGCCCCTTCTGGACAAACAGATCAACTTTCGAATATACAATCGC
CATACACATCTCACCAGTCACGACAGAAACAAGGATCCATTCAGGGTACTTCATTTCAACATTCAGTATCTTCAGGGCAGACATTGCCAGGCATGCAAACAATTGGTACAGTTGGCTCTCCTGCTGTTAGCCCTCAGATCAGACCCTCTGGAGTTTTTGGCCATAGTCAGCAAAGGCCTGGTCAAGGACAATTAAGGTCA
CAGTCTCCATCACAACATCAATCTCTAGCCTCTCAGAAGATGCATGTGCAAAACTTGCAGAGAATGCCATCCATGGGATCAATGAACTCTCAATTGCCTGGTATTTCCCAAGGTGGACAGTCCGGTGCACCCTCTAGCGCACTTCCCCATCAGCAACAGTGGATGCCGACTCAAGGAAAACAAATGCACCCATCCAGTAT
ACCTTTAACTTCACCTTCCTACCAATCACATCTTAAGCAGCAAGGTCTGCCACAGAGGTCACAACACACTCAACCACAGCAGCAGTCACTTCCATTGACACAGCAGCAGCAACTCCATCAGTTGCAGGAGCAACATTCTCAACAATATCAACAGCAACGAATACCACAGCCTTTGCACAGTGTACAACAACAACAACAGA
TGCCCCGAACATCAGGGATGGCAATTCAAAAGCCCTCCACATCAGCAGGAGCCCAAGTTTCTGGTATACCGGCATCAGGAAATACAATCCCAGCTGGAAGTAATGATCAAGCAACTGAAGCAAGTAATCGGATGATTGGGAAGAGAAGCGTCCGAGAGTTAGTTGCCCAGATTGACCCTAGTGAGAAGCTAGACTCTGAA
GTTGAAGATATTCTCATAGAGATAGCAGAAGATTTTGTTGATAAAGTGACCAACTTTTCTTGTTGTTTGGCAAAACATCGAAAATCAGAAACACTGGAACCCAAGGATATATTACTACATTTAGAAAGGAATTGGAATATGACAATTCCTGGCTTTGCTGGTGATGAATACAGGATCTACAAGAGGCCGGAAACTTCTCG
TTCTTTGCCTGGGAATAAAAATATCTGATCACGTGCATTTTACTGATTGGTTGTGGGGGATTGCGTGCAGTCTGTGAACGAGAATCACAAGCAACGGCTTTCTGTGATTCGGAAGTCAGCTGCAACTTCACAGACGGGAACTGAAACAGGAAATACTAAAGAGTCTACAGGACAAGTTACTGGGAATGCTAATTCTAAAG
CTACAACAACAAAGGGATTGCGTGAAGTATCTGGTGCACAAGAAAATTCATGATTGTACTTTGTTTTCAGGCGAAGgtaggagggcctatggtggatttggttcagctacatgacataaaaatgctttctaatatcaaggttgtaatgaagtttttgaaacagGAATCTGCCAGTTCCATCACGGGTAAGTCCTATTCAT
TTTGTACATTGCCTCTTGATTTGACATCTATAGACTAAAGAGCAACAATAAAGGTCCTCGTACTAAAAGTGGGCCTCCTGTGGTTTTTTTCTTTTCTTTGAAAGCATGGGTTTGACCACTGTTCCCTTGTAGCTGGACTGTTTATTGTACAAATATTCTTGAAAGTTCTTTAAAAGCATGGGTCTCACCATTGTTCCCTT
GTAGCTGGACTATTTTTTGCACAAATGCTCAGAGATTCTTGATGGTATAATTTGTGGAGGTTCATCACTTTCTGAGCTGTGACTTCAACATGACGAACTTGGGAATATTGGAAATGTTCTTATCTACGACCACATGATAAGCAATGTCTTAGAACATTAATATCGGGATTTTATCCTTAAAAGACAAGGGACAAATAAGA
GCATTGTATTTAATTTATTTAGCATGGAAGAGCATGTAAAATTCCGACGTTAAATCTTTTTCTCATCCACTGAAGATATAGATCAGTATTATTTCTTGACAAAATACAAGTGCTTAGTGCTTAGAGTTGTACTTTGTTTCATA
Intron 3 GTTCGCTACT ... ATGGATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.54 | 60.3 | 29 | 10 |
| A2 | 18.73 | 62.5 | 13 | 4 |
| A3 | 12.35 | 68.5 | 9 | 4 |
| A4 | 38.62 | 23.3 | 12 | 5 |
| A5 | 10.99 | 35 | 4 | 2 |
| A6 | 21.66 | 61 | 14 | 0 |
| A7 | 12.5 | 170.5 | 22 | 0 |
| A8 | 19.44 | 150.3 | 31 | 0 |
| A9 | 17.57 | 170.3 | 32 | 0 |
| A10 | 21.09 | 154.5 | 35 | 0 |
>TRINITY_DN132742_c0_g3_i6 from sample A1 / Example spliced isoformGTTAAGCATATAGATCCATAGATAAATCGCCCTTATGTGAGGTCTGCGAGATTTTGGTTGTGGCGGGTAGTTGTTCTCTCTATTCCTTCATTCAGTTAATGGAAGGAAGTTGTTTATTTCATCATAGTTGGGTTTTTATTTCACTTGCCTTTTAACACCAGCAGACTTCTTTCCCTGTTGGTGGAATTGGGAGGTGGAGG
CCACTGGGTTTCTGGAGTTCAATCAATTCAGATGTAAAATGTGAAGGGGAGGCTTGCTATTAGGGGAGGCAGTAAAGGCACCGGTGCTTGAATTTCAAATATATTTATATTAGGACAGTCAAGGCACCGGTGCTTTAATTTCAAATATATTTATATTAGATAATAAAAATGGAAGGGGAAACTGGTTCGTCATCTCAACA
AGGGAGTGCTAGTATTTTGCCGTCTGCAGCATCCGCCCCTTCAGTGGTGACACCATCCACAGGGGGAGGGGGAGGGACAACTAATGCAATGGGAGTACCGACACCCAATGTGGTTTCTGCCCAACAAAACCTTCCTCAGCAGCAGCCGAGTGCAGTGGGCAGCGGTAGAGAACCCAGTGTTGTTGCGCCCCCTCCTATTG
GGGTGCAACAACAACAGCCCAATGCAGCGTCCTCTTCAGGGGGGCATCAGATGCACCCAAACATGGTGACATCATCTCCCGGCCAACCCAATTTTCAAGCAGGCCAACCGAGGCCTGGAGTGACATCAAATAGGGGCAGGCAGCAGCAGCCATCTCCTTATTCACATTTCTCATCTCTGGCGCCATCAACTGCAATGCAC
CAGCAGCAGAGAGGGGGCGGCCCACTGCAAGGAGGCATGGGTACCCAGCAGAGGCCCCCGGCACTTGGAACATCCTATGCACATAATATGCAACAGCATCCAAGGGGAAGCATGATTGGACAACCTCAGGGCACTGGCCATCCTCCCATGGCCCCTTCTGGACAAACAGATCAACTTTCGAATATACAATCGCCATACAC
ATCTCACCAGTCACGACAGAAACAAGGATCCATTCAGGGTACTTCATTTCAACATTCAGTATCTTCAGGGCAGACATTGCCAGGCATGCAAACAATTGGTACAGTTGGCTCTCCTGCTGTTGGCCCTCAGATCAGACCCTCTGGAGTTTTTGGCCATAGTCAGCAAAGGCCTGGTCAAGGACAATTAAGGTCACAGTCTC
CATCACAACATCAATCGCTAGCCTCTCAGAAGATGCAGGTGCAAAACTTGCAGAGAATGCCATCCATGGGATCAATGAACTCTCAATTGCCTGGTATTTCCCAAGGTGGACAGTCCGGTGCACCCTCTAGCACACTTCCCCATCAGCAACAGTGGATGCCGACTCAAGGAAAACAAATGCACCCATCCAGTATACCTTTA
ACTTCACCTTCCTACCAATCACATCTTAAGCAGCAAGGTCTGCCACAGAGGTCACAACACACTCAACCACAGCAGCAGTCACTTCCATTGACACAGCAGCAGCAACTCCATCAGTTGCAGGAGCAACATTCTCAACAATATCAACAGCAACGAATACCACAGCCTTTGCACAGTGTACAACAACAACAACAGATGCCCCG
AACATCAGGGATGGCAATTCAAAAGCCCTCCACATCAGCAGGAGCCCAAGTTTCTGGTATACTGGCATCAGGAAATACAATCCCAGCTGGAAGTAATGATCAAGCAACTGAAGCAAGTAATCGGATGATTGGGAAGAGAAGCGTCCGAGAGTTAGTTGCCCAGATTGACCCTAGTGAGAAGCTAGACTCTGAAGTTGAAG
ATATTCTCATAGAGATAGCAGAAGATTTTGTTGATAAAGTGACCAACTTTTCTTGTTGTTTGGCAAAACATCGAAAATCAGAAACACTGGAACCCAAGGATATATTACTACATTTAGAAAGGAATTGGAATATGACAATTCCTGGCTTTGCTGGTGATGAATACAGGATCTACAAGAGGCCGGTAAGAATCTCTCTCGGA
TTATCTCCTCGAGGACAGCACAATGATGAACATGTTTTGCATATCAACATATTCTTGAGCACTGTGAAATTATAACTAGCAAGTGACACTGATTTTAAGTTCCAATATGTTCCTAGCATGCAATAAAATGCAATGCTATCCATGTTCTTTACCTAAATGGCCTTCCTGGAAGTTGACTTGAGGGAAATGGTAGTGTCCTA
GGAAGCATTGGTCTACTTATTTAAGACCTTAGTGTTATGCAGGAAACTTCTCGTTCTTTGCCTGGGAATAAAAATATCTGATCACGTGCATTTTACTGATTGGTTGTGGGGGATTGCGTGCAGTCTGTGAACGAGAATCACAAGCAACGGCTTTCTGTGGTATATAACTCAGTGACATTTTCTTTGTATCCTTTACGCCT
TTTTCTATCAGCACTTTTGGTTTCTAACATGGCTTCTATTTTTCTCTCATCATAGATAGTTTGCTGTCTTTGTAAGTTTATACTGAAAAGGACTTTTGTAAGAGAGATTAGTTGGATTACTAGTAATGGTTGTAGTCCATATGGTGATTCTTAGTTTTTTTTTTTTCTTTCTTTCAGATTCGGAAGTCAGCTGCAACTTC
ACAGACGGGAACTGAAACAGGAAATACTAAAGAGTCTACAGGACAAGTTACTGGGAATGCTAATTCTAAAGCTACAACAACAAAGGGATTGCGTGAAGTATCTGGTGCACAAGAAAATTCATGATTGTACTTTGTTTTCAGGCGAAGGTAGGAGGGCCTATGGTGGATTGGTTCAGCTACATGACATAAAAATGCTTTCT
AATATCAAGGTTGTAATGAAGTTTTTGAAACAGGACACTGCCAGTTCTATCACGGGTAAGTCCTATTCATTTTGTACATTGCCTCTTGATTTGACCTCTATAGACTAAAGAGCAACAATAAAGGTCCTCGTACTAAAAGTGGGCCTCCTGTGGCTTTTTTCTTTTCTTTGAAAGCATGGGTTTGACCACTGTTCCCTTGT
AGCTGGACTGTTTATTGTACAAATATTCTTGAAAGTTCTATAAAAGCATGGGTCGCACCATTGTTCCCTTGTAGCTGGACTATTTTTTGCACAAATGCTCAGAGATTCTTGATGGTATAATTTGTGGAGGTTCATCACTTTCTGAGCTGTGACTTCAACATGACGAACTTGGGAATATTGGAAATGTTCTTTTCTACGAC
CACATGATAAGCAATGTCTTAGAACATTAAAATCGGGATTTTATCCTTAAAAGACAAGGGACAAATAAGAGCATTGCATTTAATTTATTTAGCATGGAAGAGCATGTAAAATTCCGACGTTAAATCTTTTTCTCATCCACTGAAGATATAGATCAGTATTATTTCTTGACAAAATACAAGTGCTTAGTGCTTAGAGTTGT
ACTTTGTTTCATATGTGGAGCGCTTCAATTTGTTTTAGTGTATGCAGTTTAATTGCCATTATTATACCCCTGTTTTAGTGGTGGGAGTTGCTGTGAAAACATAGCTTCCGAACTATTCAAGCATGGTTACAGAATGGAGTATCTGTGCTTTCTGATATATAAAACTTTGATTGTGTTAGTTCTGTAATGACGTGCTTGCT
CAAATCTTTTCTGCAC
>TRINITY_DN132742_c0_g3_i11 from sample A1 / Example unspliced isoform:AAGATGCAGGTGCAAAACTTGCAGAGAATGCCATCCATGGGATCAATGAACTCTCAATTGCCTGGTATTTCCCAAGGTGGACAGTCCGGTGCACCCTCTAGCACACTTCCCCATCAGCAACAGTGGATGCCGACTCAAGGAAAACAAATGCACCCATCCAGTATACCTTTAACTTCACCTTCCTACCAATCACATCTTAA
GCAGCAAGGTCTGCCACAGAGGTCACAACACACTCAACCACAGCAGCAGTCACTTCCATTGACACAGCAGCAGCAACTCCATCAGTTGCAGGAGCAACATTCTCAACAATATCAACAGCAACGAATACCACAGCCTTTGCACAGTGTACAACAACAACAACAGATGCCCCGAACATCAGGGATGGCAATTCAAAAGCCCT
CCACATCAGCAGGAGCCCAAGTTTCTGGTATACTGGCATCAGGAAATACAATCCCAGCTGGAAGTAATGATCAAGCAACTGAAGCAAGTAATCGGATGATTGGGAAGAGAAGCGTCCGAGAGTTAGTTGCCCAGgttcgctactgacattgtattctaatgatttgtattaattggaagcaagctagcttgtgtgatttt
tggaacaatgattctgttcaatgtagcatttacagaggtttgagtactgatagataaaattacgttacaaataccatctaggaagtaaatcatccttatttgttgatctatgtgtgctaaactatttatatacttttcttcatgtttttttaatcgatggttaatgcttgcattattgcattaattaaacttgctaatgg
actacaattattatgggagtattcttttcaagtgtcttatcaaggacaggaatcacttgatttttgaatgcatgaatttcttttttatgatggatgcagATTGACCCTAGTGAGAAGCTAGACTCTGAAGTTGAAGATATTCTCATAGAGATAGCAGAAGATTTTGTTGATAAAGTAAGATCTAGTTGCATTTTGTTTAT
CTATTTGATATAAAATATCTATATATGCTCATTAATAGTTTTGTGAAATTTTTGAACAAAGCTATCCTAGAAATGAACTAGGCTCCACCTGTATTTTAGGGAATGTTGTGAGTTTAATAGGCATGCTTTGGTAAATTTTCTGATCTTTTCTTTGCCTGGTATCCACATTTTCCTAATTATTTGTATGTTCCAAAGCGATT
TTGTAATGCTTTTGATGCTTAATTGGTTTCTTTATAGTTCTTTAAAAGATGTTAGAGCTCCTTTATAGTTATTGAAAAGTTGTACAACTCACATTTCAAAGCTGG
Intron 4 GTATATAACT ... TTTCTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.03 | 116.6 | 18 | 25 |
| A2 | 19.41 | 106.1 | 17 | 24.7 |
| A3 | 15.31 | 95.5 | 7.7 | 17 |
| A4 | 13.46 | 52.2 | 11.3 | 7.7 |
| A5 | 10.44 | 32.9 | 6 | 3.7 |
| A6 | 12.24 | 194 | 17.3 | 25.7 |
| A7 | 13.98 | 425.8 | 45.7 | 67 |
| A8 | 15.19 | 474.7 | 42 | 83.3 |
| A9 | 13.1 | 377.9 | 34.7 | 54.7 |
| A10 | 12.65 | 329.1 | 35 | 45.3 |
>TRINITY_DN132742_c0_g3_i7 from sample A1 / Example spliced isoformGTTAAGCATATAGATCCATAGATAAATCGCCCTTATGTGAGGTCTGCGAGATTTTGGTTGTGGCGGGTAGTTGTTCTCTCTATTCCTTCATTCAGTTAATGGAAGGAAGTTGTTTATTTCATCATAGTTGGGTTTTTATTTCACTTGCCTTTTAACACCAGCAGACTTCTTTCCCTGTTGGTGGAATTGGGAGGTGGAGG
CCACTGGGTTTCTGGAGTTCAATCAATTCAGATGTAAAATGTGAAGGGGAGGCTTGCTATTAGGGGAGGCAGTAAAGGCACCGGTGCTTGAATTTCAAATATATTTATATTAGATAATAAAAATGGAAGGGGAAACTGGTTCGTCATCTCAACAAGGGAGTGCTAGTATTTTGCCGTCTGCAGCATCCGCCCCTTCAGTG
GTGACACCATCCACAGGGGGAGGGGGAGGGACAACTAATGCAATGGGAGTACCGACACCCAATGTGGTTTCTGCCCAACAAAACCTTCCTCAGCAGCAGCCGAGTGCAGTGGGCAGCGGTAGAGAACCCAGTGTTGTTGCGCCCCCTCCTATTGGGGTGCAACAACAACAGCCCAATGCAGCGTCCTCTTCAGGGGGGCA
TCAGATGCACCCAAACATGGTGACATCATCTCCCGGCCAACCCAATTTTCAAGCAGGCCAACCGAGGCCTGGAGTGACATCAAATAGGGGCAGGCAGCAGCAGCCATCTCCTTATTCACATTTCTCATCTCTGGCGCCATCAACTGCAATGCACCAGCAGCAGAGAGGGGGCGGCCCACTGCAAGGAGGCATGGGTACCC
AGCAGAGGCCCCCGGCACTTGGAACATCCTATGCACATAATATGCAACAGCATCCAAGGGGAAGCATGATTGGACAACCTCAGGGCACTGGCCATCCTCCCATGGCCCCTTCTGGACAAACAGATCAACTTTCGAATATACAATCGCCATACACATCTCACCAGTCACGACAGAAACAAGGATCCATTCAGGGTACTTCA
TTTCAACATTCAGTATCTTCAGGGCAGACATTGCCAGGCATGCAAACAATTGGTACAGTTGGCTCTCCTGCTGTTGGCCCTCAGATCAGACCCTCTGGAGTTTTTGGCCATAGTCAGCAAAGGCCTGGTCAAGGACAATTAAGGTCACAGTCTCCATCACAACATCAATCGCTAGCCTCTCAGAAGATGCAGGTGCAAAA
CTTGCAGAGAATGCCATCCATGGGATCAATGAACTCTCAATTGCCTGGTATTTCCCAAGGTGGACAGTCCGGTGCACCCTCTAGCACACTTCCCCATCAGCAACAGTGGATGCCGACTCAAGGAAAACAAATGCACCCATCCAGTATACCTTTAACTTCACCTTCCTACCAATCACATCTTAAGCAGCAAGGTCTGCCAC
AGAGGTCACAACACACTCAACCACAGCAGCAGTCACTTCCATTGACACAGCAGCAGCAACTCCATCAGTTGCAGGAGCAACATTCTCAACAATATCAACAGCAACGAATACCACAGCCTTTGCACAGTGTACAACAACAACAACAGATGCCCCGAACATCAGGGATGGCAATTCAAAAGCCCTCCACATCAGCAGGAGCC
CAAGTTTCTGGTATACTGGCATCAGGAAATACAATCCCAGCTGGAAGTAATGATCAAGCAACTGAAGCAAGTAATCGGATGATTGGGAAGAGAAGCGTCCGAGAGTTAGTTGCCCAGATTGACCCTAGTGAGAAGCTAGACTCTGAAGTTGAAGATATTCTCATAGAGATAGCAGAAGATTTTGTTGATAAAGTGACCAA
CTTTTCTTGTTGTTTGGCAAAACATCGAAAATCAGAAACACTGGAACCCAAGGATATATTACTACATTTAGAAAGGAATTGGAATATGACAATTCCTGGCTTTGCTGGTGATGAATACAGGATCTACAAGAGGCCGTCTGTGAACGAGAATCACAAGCAACGGCTTTCTGTGATTCGGAAGTCAGCTGCAACTTCACAGA
CGGGAACTGAAACAGGAAATACTAAAGAGTCTACAGGACAAGTTACTGGGAATGCTAATTCTAAAGCTACAACAACAAAGGGATTGCGTGAAGTATCTGGTGCACAAGAAAATTCATGATTGTACTTTGTTTTCAGGCGAAGGTAGGAGGGCCTATGGTGGATTGGTTCAGCTACATGACATAAAAATGCTTTCTAATAT
CAAGGTTGTAATGAAGTTTTTGAAACAGGACACTGCCAGTTCTATCACGGGTAAGTCCTATTCATTTTGTACATTGCCTCTTGATTTGACCTCTATAGACTAAAGAGCAACAATAAAGGTCCTCGTACTAAAAGTGGGCCTCCTGTGGCTTTTTTCTTTTCTTTGAAAGCATGGGTTTGACCACTGTTCCCTTGTAGCTG
GACTGTTTATTGTACAAATATTCTTGAAAGTTCTATAAAAGCATGGGTCGCACCATTGTTCCCTTGTAGCTGGACTATTTTTTGCACAAATGCTCAGAGATTCTTGATGGTATAATTTGTGGAGGTTCATCACTTTCTGAGCTGTGACTTCAACATGACGAACTTGGGAATATTGGAAATGTTCTTTTCTACGACCACAT
GATAAGCAATGTCTTAGAACATTAAAATCGGGATTTTATCCTTAAAAGACAAGGGACAAATAAGAGCATTGCATTTAATTTATTTAGCATGGAAGAGCATGTAAAATTCCGACGTTAAATCTTTTTCTCATCCACTGAAGATATAGATCAGTATTATTTCTTGACAAAATACAAGTGCTTAGTGCTTAGAGTTGTACTTT
GTTTCATATGTGGAGCGCTTCAATTTGTTTTAGTGTATGCAGTTTAATTGCCATTATTATACCCCTGTTTTAGTGGTGGGAGTTGCTGTGAAAACATAGCTTCCGAACTATTCAAGCATGGTTACAGAATGGAGTATCTGTGCTTTCTGATATATAAAACTTTGATTGTGTTAGTTCTGTAATGACGTGCTTGCTCAAAT
CTTTTCTGCAC
>TRINITY_DN132742_c0_g3_i6 from sample A1 / Example unspliced isoform:GTTAAGCATATAGATCCATAGATAAATCGCCCTTATGTGAGGTCTGCGAGATTTTGGTTGTGGCGGGTAGTTGTTCTCTCTATTCCTTCATTCAGTTAATGGAAGGAAGTTGTTTATTTCATCATAGTTGGGTTTTTATTTCACTTGCCTTTTAACACCAGCAGACTTCTTTCCCTGTTGGTGGAATTGGGAGGTGGAGG
CCACTGGGTTTCTGGAGTTCAATCAATTCAGATGTAAAATGTGAAGGGGAGGCTTGCTATTAGGGGAGGCAGTAAAGGCACCGGTGCTTGAATTTCAAATATATTTATATTAGGACAGTCAAGGCACCGGTGCTTTAATTTCAAATATATTTATATTAGATAATAAAAATGGAAGGGGAAACTGGTTCGTCATCTCAACA
AGGGAGTGCTAGTATTTTGCCGTCTGCAGCATCCGCCCCTTCAGTGGTGACACCATCCACAGGGGGAGGGGGAGGGACAACTAATGCAATGGGAGTACCGACACCCAATGTGGTTTCTGCCCAACAAAACCTTCCTCAGCAGCAGCCGAGTGCAGTGGGCAGCGGTAGAGAACCCAGTGTTGTTGCGCCCCCTCCTATTG
GGGTGCAACAACAACAGCCCAATGCAGCGTCCTCTTCAGGGGGGCATCAGATGCACCCAAACATGGTGACATCATCTCCCGGCCAACCCAATTTTCAAGCAGGCCAACCGAGGCCTGGAGTGACATCAAATAGGGGCAGGCAGCAGCAGCCATCTCCTTATTCACATTTCTCATCTCTGGCGCCATCAACTGCAATGCAC
CAGCAGCAGAGAGGGGGCGGCCCACTGCAAGGAGGCATGGGTACCCAGCAGAGGCCCCCGGCACTTGGAACATCCTATGCACATAATATGCAACAGCATCCAAGGGGAAGCATGATTGGACAACCTCAGGGCACTGGCCATCCTCCCATGGCCCCTTCTGGACAAACAGATCAACTTTCGAATATACAATCGCCATACAC
ATCTCACCAGTCACGACAGAAACAAGGATCCATTCAGGGTACTTCATTTCAACATTCAGTATCTTCAGGGCAGACATTGCCAGGCATGCAAACAATTGGTACAGTTGGCTCTCCTGCTGTTGGCCCTCAGATCAGACCCTCTGGAGTTTTTGGCCATAGTCAGCAAAGGCCTGGTCAAGGACAATTAAGGTCACAGTCTC
CATCACAACATCAATCGCTAGCCTCTCAGAAGATGCAGGTGCAAAACTTGCAGAGAATGCCATCCATGGGATCAATGAACTCTCAATTGCCTGGTATTTCCCAAGGTGGACAGTCCGGTGCACCCTCTAGCACACTTCCCCATCAGCAACAGTGGATGCCGACTCAAGGAAAACAAATGCACCCATCCAGTATACCTTTA
ACTTCACCTTCCTACCAATCACATCTTAAGCAGCAAGGTCTGCCACAGAGGTCACAACACACTCAACCACAGCAGCAGTCACTTCCATTGACACAGCAGCAGCAACTCCATCAGTTGCAGGAGCAACATTCTCAACAATATCAACAGCAACGAATACCACAGCCTTTGCACAGTGTACAACAACAACAACAGATGCCCCG
AACATCAGGGATGGCAATTCAAAAGCCCTCCACATCAGCAGGAGCCCAAGTTTCTGGTATACTGGCATCAGGAAATACAATCCCAGCTGGAAGTAATGATCAAGCAACTGAAGCAAGTAATCGGATGATTGGGAAGAGAAGCGTCCGAGAGTTAGTTGCCCAGATTGACCCTAGTGAGAAGCTAGACTCTGAAGTTGAAG
ATATTCTCATAGAGATAGCAGAAGATTTTGTTGATAAAGTGACCAACTTTTCTTGTTGTTTGGCAAAACATCGAAAATCAGAAACACTGGAACCCAAGGATATATTACTACATTTAGAAAGGAATTGGAATATGACAATTCCTGGCTTTGCTGGTGATGAATACAGGATCTACAAGAGGCCGGTAAGAATCTCTCTCGGA
TTATCTCCTCGAGGACAGCACAATGATGAACATGTTTTGCATATCAACATATTCTTGAGCACTGTGAAATTATAACTAGCAAGTGACACTGATTTTAAGTTCCAATATGTTCCTAGCATGCAATAAAATGCAATGCTATCCATGTTCTTTACCTAAATGGCCTTCCTGGAAGTTGACTTGAGGGAAATGGTAGTGTCCTA
GGAAGCATTGGTCTACTTATTTAAGACCTTAGTGTTATGCAGGAAACTTCTCGTTCTTTGCCTGGGAATAAAAATATCTGATCACGTGCATTTTACTGATTGGTTGTGGGGGATTGCGTGCAGTCTGTGAACGAGAATCACAAGCAACGGCTTTCTGTGgtatataactcagtgacattttctttgtatcctttacgcct
ttttctatcagcacttttggtttctaacatggcttctatttttctctcatcatagatagtttgctgtctttgtaagtttatactgaaaaggacttttgtaagagagattagttggattactagtaatggttgtagtccatatggtgattcttagttttttttttttctttctttcagATTCGGAAGTCAGCTGCAACTTC
ACAGACGGGAACTGAAACAGGAAATACTAAAGAGTCTACAGGACAAGTTACTGGGAATGCTAATTCTAAAGCTACAACAACAAAGGGATTGCGTGAAGTATCTGGTGCACAAGAAAATTCATGATTGTACTTTGTTTTCAGGCGAAGGTAGGAGGGCCTATGGTGGATTGGTTCAGCTACATGACATAAAAATGCTTTCT
AATATCAAGGTTGTAATGAAGTTTTTGAAACAGGACACTGCCAGTTCTATCACGGGTAAGTCCTATTCATTTTGTACATTGCCTCTTGATTTGACCTCTATAGACTAAAGAGCAACAATAAAGGTCCTCGTACTAAAAGTGGGCCTCCTGTGGCTTTTTTCTTTTCTTTGAAAGCATGGGTTTGACCACTGTTCCCTTGT
AGCTGGACTGTTTATTGTACAAATATTCTTGAAAGTTCTATAAAAGCATGGGTCGCACCATTGTTCCCTTGTAGCTGGACTATTTTTTGCACAAATGCTCAGAGATTCTTGATGGTATAATTTGTGGAGGTTCATCACTTTCTGAGCTGTGACTTCAACATGACGAACTTGGGAATATTGGAAATGTTCTTTTCTACGAC
CACATGATAAGCAATGTCTTAGAACATTAAAATCGGGATTTTATCCTTAAAAGACAAGGGACAAATAAGAGCATTGCATTTAATTTATTTAGCATGGAAGAGCATGTAAAATTCCGACGTTAAATCTTTTTCTCATCCACTGAAGATATAGATCAGTATTATTTCTTGACAAAATACAAGTGCTTAGTGCTTAGAGTTGT
ACTTTGTTTCATATGTGGAGCGCTTCAATTTGTTTTAGTGTATGCAGTTTAATTGCCATTATTATACCCCTGTTTTAGTGGTGGGAGTTGCTGTGAAAACATAGCTTCCGAACTATTCAAGCATGGTTACAGAATGGAGTATCTGTGCTTTCTGATATATAAAACTTTGATTGTGTTAGTTCTGTAATGACGTGCTTGCT
CAAATCTTTTCTGCAC
Intron 5 GTAAGAATCT ... TGTTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.25 | 60 | 13.2 | 27.3 |
| A2 | 21.33 | 42 | 4.8 | 18 |
| A3 | 21.41 | 37 | 14 | 6.2 |
| A4 | 23.05 | 43 | 7.8 | 18 |
| A5 | 28.09 | 21.6 | 7.2 | 9.6 |
| A6 | 20.46 | 77.2 | 13.4 | 26.4 |
| A7 | 26.2 | 171.8 | 38.4 | 83.7 |
| A8 | 24 | 203 | 44.3 | 84.1 |
| A9 | 20.94 | 166.2 | 29.8 | 58.4 |
| A10 | 24.58 | 166 | 47 | 61.3 |
>TRINITY_DN132742_c0_g3_i2 from sample A1 / Example spliced isoformGTTAAGCATATAGATCCATAGATAAATCGCCCTTATGTGAGGTCTGCGAGATTTTGGTTGTGGCGGGTAGTTGTTCTCTCTATTCCTTCATTCAGTTAATGGAAGGAAGTTGTTTATTTCATCATAGTTGGGTTTTTATTTCACTTGCCTTTTAACACCAGCAGACTTCTTTCCCTGTTGGTGGAATTGGGAGGTGGAGG
CCACTGGGTTTCTGGAGTTCAATCAATTCAGATGTAAAATGTGAAGGGGAGGCTTGCTATTAGGGGAGGCAGTAAAGGCACCGGTGCTTGAATTTCAAATATATTTATATTAGGACAGTCAAGGCACCGGTGCTTTAATTTCAAATATATTTATATTAGATAATAAAAATGGAAGGGGAAACTGGTTCGTCATCTCAACA
AGGGAGTGCTAGTATTTTGCCGTCTGCAGCATCCGCCCCTTCAGTGGTGACACCATCCACAGGGGGAGGGGGAGGGACAACTAATGCAATGGGAGTACCGACACCCAATGTGGTTTCTGCCCAACAAAACCTTCCTCAGCAGCAGCCGAGTGCAGTGGGCAGCGGTAGAGAACCCAGTGTTGTTGCGCCCCCTCCTATTG
GGGTGCAACAACAACAGCCCAATGCAGCGTCCTCTTCAGGGGGGCATCAGATGCACCCAAACATGGTGACATCATCTCCCGGCCAACCCAATTTTCAAGCAGGCCAACCGAGGCCTGGAGTGACATCAAATAGGGGCAGGCAGCAGCAGCCATCTCCTTATTCACATTTCTCATCTCTGGCGCCATCAACTGCAATGCAC
CAGCAGCAGAGAGGGGGCGGCCCACTGCAAGGAGGCATGGGTACCCAGCAGAGGCCCCCGGCACTTGGAACATCCTATGCACATAATATGCAACAGCATCCAAGGGGAAGCATGATTGGACAACCTCAGGGCACTGGCCATCCTCCCATGGCCCCTTCTGGACAAACAGATCAACTTTCGAATATACAATCGCCATACAC
ATCTCACCAGTCACGACAGAAACAAGGATCCATTCAGGGTACTTCATTTCAACATTCAGTATCTTCAGGGCAGACATTGCCAGGCATGCAAACAATTGGTACAGTTGGCTCTCCTGCTGTTGGCCCTCAGATCAGACCCTCTGGAGTTTTTGGCCATAGTCAGCAAAGGCCTGGTCAAGGACAATTAAGGTCACAGTCTC
CATCACAACATCAATCGCTAGCCTCTCAGAAGATGCAGGTGCAAAACTTGCAGAGAATGCCATCCATGGGATCAATGAACTCTCAATTGCCTGGTATTTCCCAAGGTGGACAGTCCGGTGCACCCTCTAGCACACTTCCCCATCAGCAACAGTGGATGCCGACTCAAGGAAAACAAATGCACCCATCCAGTATACCTTTA
ACTTCACCTTCCTACCAATCACATCTTAAGCAGCAAGGTCTGCCACAGAGGTCACAACACACTCAACCACAGCAGCAGTCACTTCCATTGACACAGCAGCAGCAACTCCATCAGTTGCAGGAGCAACATTCTCAACAATATCAACAGCAACGAATACCACAGCCTTTGCACAGTGTACAACAACAACAACAGATGCCCCG
AACATCAGGGATGGCAATTCAAAAGCCCTCCACATCAGCAGGAGCCCAAGTTTCTGGTATACTGGCATCAGGAAATACAATCCCAGCTGGAAGTAATGATCAAGCAACTGAAGCAAGTAATCGGATGATTGGGAAGAGAAGCGTCCGAGAGTTAGTTGCCCAGATTGACCCTAGTGAGAAGCTAGACTCTGAAGTTGAAG
ATATTCTCATAGAGATAGCAGAAGATTTTGTTGATAAAGTGACCAACTTTTCTTGTTGTTTGGCAAAACATCGAAAATCAGAAACACTGGAACCCAAGGATATATTACTACATTTAGAAAGGAATTGGAATATGACAATTCCTGGCTTTGCTGGTGATGAATACAGGATCTACAAGAGGCCGGAAACTTCTCGTTCTTTG
CCTGGGAATAAAAATATCTGATCACGTGCATTTTACTGATTGGTTGTGGGGGATTGCGTGCAGTCTGTGAACGAGAATCACAAGCAACGGCTTTCTGTGATTCGGAAGTCAGCTGCAACTTCACAGACGGGAACTGAAACAGGAAATACTAAAGAGTCTACAGGACAAGTTACTGGGAATGCTAATTCTAAAGCTACAAC
AACAAAGGGATTGCGTGAAGTATCTGGTGCACAAGAAAATTCATGATTGTACTTTGTTTTCAGGCGAAGG
>TRINITY_DN132742_c0_g3_i12 from sample A1 / Example unspliced isoform:GTTAAGCATATAGATCCATAGATAAATCGCCCTTATGTGAGGTCTGCGAGATTTTGGTTGTGGCGGGTAGTTGTTCTCTCTATTCCTTCATTCAGTTAATGGAAGGAAGTTGTTTATTTCATCATAGTTGGGTTTTTATTTCACTTGCCTTTTAACACCAGCAGACTTCTTTCCCTGTTGGTGGAATTGGGAGGTGGAGG
CCACTGGGTTTCTGGAGTTCAATCAATTCAGATGTAAAATGTGAAGGGGAGGCTTGCTATTAGGGGAGGCAGTAAAGGCACCGGTGCTTGAATTTCAAATATATTTATATTAGATAATAAAAATGGAAGGGGAAACTGGTTCGTCATCTCAACAAGGGAGTGCTAGTATTTTGCCGTCTGCAGCATCCGCCCCTTCAGTG
GTGACACCATCCACAGGGGGAGGGGGAGGGACAACTAATGCAATGGGAGTACCGACACCCAATGTGGTTTCTGCCCAACAAAACCTTCCTCAGCAGCAGCCGAGTGCAGTGGGCAGCGGTAGAGAACCCAGTGTTGTTGCGCCCCCTCCTATTGGGGTGCAACAACAACAGCCCAATGCAGCGTCCTCTTCAGGGGGGCA
TCAGATGCACCCAAACATGGTGACATCATCTCCCGGCCAACCCAATTTTCAAGCAGGCCAACCGAGGCCTGGAGTGACATCAAATAGGGGCAGGCAGCAGCAGCCATCTCCTTATTCACATTTCTCATCTCTGGCGCCATCAACTGCAATGCACCAGCAGCAGAGAGGGGGCGGCCCACTGCAAGGAGGCATGGGTACCC
AGCAGAGGCCCCCGGCACTTGGAACATCCTATGCACATAATATGCAACAGCATCCAAGGGGAAGCATGATTGGACAACCTCAGGGCACTGGCCATCCTCCCATGGCCCCTTCTGGACAAACAGATCAACTTTCGAATATACAATCGCCATACACATCTCACCAGTCACGACAGAAACAAGGATCCATTCAGGGTACTTCA
TTTCAACATTCAGTATCTTCAGGGCAGACATTGCCAGGCATGCAAACAATTGGTACAGTTGGCTCTCCTGCTGTTGGCCCTCAGATCAGACCCTCTGGAGTTTTTGGCCATAGTCAGCAAAGGCCTGGTCAAGGACAATTAAGGTCACAGTCTCCATCACAACATCAATCGCTAGCCTCTCAGAAGATGCAGGTGCAAAA
CTTGCAGAGAATGCCATCCATGGGATCAATGAACTCTCAATTGCCTGGTATTTCCCAAGGTGGACAGTCCGGTGCACCCTCTAGCACACTTCCCCATCAGCAACAGTGGATGCCGACTCAAGGAAAACAAATGCACCCATCCAGTATACCTTTAACTTCACCTTCCTACCAATCACATCTTAAGCAGCAAGGTCTGCCAC
AGAGGTCACAACACACTCAACCACAGCAGCAGTCACTTCCATTGACACAGCAGCAGCAACTCCATCAGTTGCAGGAGCAACATTCTCAACAATATCAACAGCAACGAATACCACAGCCTTTGCACAGTGTACAACAACAACAACAGATGCCCCGAACATCAGGGATGGCAATTCAAAAGCCCTCCACATCAGCAGGAGCC
CAAGTTTCTGGTATACTGGCATCAGGAAATACAATCCCAGCTGGAAGTAATGATCAAGCAACTGAAGCAAGTAATCGGATGATTGGGAAGAGAAGCGTCCGAGAGTTAGTTGCCCAGATTGACCCTAGTGAGAAGCTAGACTCTGAAGTTGAAGATATTCTCATAGAGATAGCAGAAGATTTTGTTGATAAAGTGACCAA
CTTTTCTTGTTGTTTGGCAAAACATCGAAAATCAGAAACACTGGAACCCAAGGATATATTACTACATTTAGAAAGGAATTGGAATATGACAATTCCTGGCTTTGCTGGTGATGAATACAGGATCTACAAGAGGCCGgtaagaatctctctcggattatctcctcgaggacagcacaatgatgaacatgttttgcatatca
acatattcttgagcactgtgaaattataactagcaagtgacactgattttaagttccaatatgttcctagcatgcaataaaatgcaatgctatccatgttctttacctaaatggccttcctggaagttgacttgagggaaatggtagtgtcctaggaagcattggtctacttatttaagaccttagtgttatgcagGAAA
CTTCTCGTTCTTTGCCTGGGAATAAAAATATCTGATCACGTGCATTTTACTGATTGGTTGTGGGGGATTGCGTGCAGTCTGTGAACGAGAATCACAAGCAACGGCTTTCTGTGGTATATAACTCAGTGACATTTTCTTTGTATCCTTTACGCCTTTTTCTATCAGCACTTTTGGTTTCTAACATGGCTTCTATTTTTCTC
TCATCATAGATAGTTTGCTGTCTTTGTAAGTTTATACTGAAAAGGACTTTTGTAAGAGAGATTAGTTGGATTACTAGTAATGGTTGTAGTCCATATGGTGATTCTTAGTTTTTTTTTTTTCTTTCTTTCAGATTCGGAAGTCAGCTGCAACTTCACAGACGGGAACTGAAACAGGAAATACTAAAGAGTCTACAGGACAA
GTTACTGGGAATGCTAATTCTAAAGCTACAACAACAAAGGGATTGCGTGAAGTATCTGGTGCACAAGAAAATTCATGATTGTACTTTGTTTTCAGGCGAAGGTAGGAGGGCCTATGGTGGATTGGTTCAGCTACATGACATAAAAATGCTTTCTAATATCAAGGTTGTAATGAAGTTTTTGAAACAGGACACTGCCAGTT
CTATCACGGGTAAGTCCTATTCATTTTGTACATTGCCTCTTGATTTGACCTCTATAGACTAAAGAGCAACAATAAAGGTCCTCGTACTAAAAGTGGGCCTCCTGTGGCTTTTTTCTTTTCTTTGAAAGCATGGGTTTGACCACTGTTCCCTTGTAGCTGGACTGTTTATTGTACAAATATTCTTGAAAGTTCTATAAAAG
CATGGGTCGCACCATTGTTCCCTTGTAGCTGGACTATTTTTTGCACAAATGCTCAGAGATTCTTGATGGTATAATTTGTGGAGGTTCATCACTTTCTGAGCTGTGACTTCAACATGACGAACTTGGGAATATTGGAAATGTTCTTTTCTACGACCACATGATAAGCAATGTCTTAGAACATTAAAATCGGGATTTTATCC
TTAAAAGACAAGGGACAAATAAGAGCATTGCATTTAATTTATTTAGCATGGAAGAGCATGTAAAATTCCGACGTTAAATCTTTTTCTCATCCACTGAAGATATAGATCAGTATTATTTCTTGACAAAATACAAGTGCTTAGTGCTTAGAGTTGTACTTTGTTTCATATGTGGAGCGCTTCAATTTGTTTTAGTGTATGCA
GTTTAATTGCCATTATTATACCCCTGTTTTAGTGGTGGGAGTTGCTGTGAAAACATAGCTTCCGAACTATTCAAGCATGGTTACAGAATGGAGTATCTGTGCTTTCTGATATATAAAACTTTGATTGTGTTAGTTCTGTAATGACGTGCTTGCTCAAATCTTTTCTGCAC
Intron 6 GTGCTTGAAT ... TTTATATTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 70.87 | 15 | 35 | 38 |
| A2 | 71.79 | 11 | 26 | 30 |
| A3 | 78 | 11 | 43 | 35 |
| A4 | 72.5 | 11 | 26 | 32 |
| A5 | 78.26 | 5 | 12 | 24 |
| A6 | 78.18 | 6 | 24 | 19 |
| A7 | 84.52 | 12 | 67 | 64 |
| A8 | 86.67 | 2 | 10 | 16 |
| A9 | 72.97 | 20 | 52 | 56 |
| A10 | 80.18 | 22 | 85 | 93 |
>TRINITY_DN119970_c0_g1_i1 from sample A2 / Example spliced isoformGGGGAACCGTTATACAAACACAAGGACGCTCGCGCTCATGCTATGCAACAAGCGAGGTTGTACCATCATACCACAAATTTTTGAAGAAGTTAAGCATATAGATCCATAGATAAATCGCCCTTATGTGAGGTCTGCGAGATTATGGTTGTGGCGGGTAGTTGTTCTCTCTATTCCTTCATTCAGTTAATGGAAGGAAGTTC
TTTATTTCATCATATTTGGGTTTTTATTTCACTTGCCTTTTAACACCAGCAGACTTCTTTCCCTGTTGGTGGAATTGGGAGGTGGAGGCCATTGGGTTTCTGGAGTTCAATCAATTCAGATGTAAAATGTGAAGGGGAGGCTTGCTATTAGGGCAGTCAAGGCACCGATAATAAAAATGGAAGGGGAAACTGGTTCGTCA
TCTCAACAAGGGAGTGCTAGTATTTTGCCGTCTGCAGCATCCGCCCCTTCAGTGGTGACACCATCCACAGGGGGAGGGGGAGGGACAACTAATGCAATGGGAGTACCGACACCCAATGTGGTTTCTGCCCAACAAAACCTTCCTCAGCAGCAGCCGAGTGCAGTGGGCAGCGGTAGAGAACCCAGTGTTGTTGCGCCCCC
TCCTATTGGGGTGCAACAACAACAGCCCAATGCAGCGTCCTCTTCAGGGGGGCATCAGATGCACCCAAACATGGTGACATCATCTCCCGGCCAACCCAATTTTCAAGCAGGCCAACCGAGGCCTGGAGTGACATCAAATAGGGGCAGGCAGCAGCAGCCATCTCCTTATTCACATTTCTCATCTCTGGCGCCATCAACTG
CAATGCACCAGCAGCAGAGAGGGGGCGGCCCACTGCAAGGAGGCATGGGTACCCAGCAGAGGCCCCCGGCACTTGGAACATCCTATGCACATAATATGCAACAGCATCCAAGGGGAAGCATGATTGGACAACCTCAGGGCACTGGCCATCCTCCCATGGCCCCTTCTGGACAAACAGATCAACTTTCGAATATACAATCG
CCATACACATCTCACCAGTCACGACAGAAACAAGGATCCATTCAGGGTACTTCATTTCAACATTCAGTATCTTCAGGGCAGACATTGCCAGGCATGCAAACAATTGGTACAGTTGGCTCTCCTGCTGTTGGCCCTCAGATCAGACCCTCTGGAGTTTTTGGCCATAGTCAGCAAAGGCCTGGTCAAGGACAATTAAGGTC
ACAGTCTCCATCACAACATCAATCGCTAGCCTCTCAGAAGATGCAGGTGCAAAACTTGCAGAGAATGCCATCCATGGGATCAATGAACTCTCAATTGCCTGGTATTTCCCAAGGTGGACAGTCCGGTGCACCCTCTAGCACACTTCCCCATCAGCAACAGTGGATGCCGACTCAAGGAAAACAAATGCACCCATCCAGTA
TACCTTTAACTTCACCTTCCTACCAATCACATCTTAAGCAGCAAGGTCTGCCACAGAGGTCACAACACACTCAACCACAGCAGCAGTCACTTCCATTGACACAGCAGCAGCAACTCCATCAGTTGCAGGAGCAACATTCTCAACAATATCAACAGCAACGAATACCACAGCCTTTGCACAGTGTACAACAACAACAACAG
ATGCCCCGAACATCAGGGATGGCAATTCAAAAGCCCTCCACATCAGCAGGAGCCCAAGTTTCTGGTATACCGGCATCAGGAAATACAATCCCAGCTGGAAGTAATGATCAAGCAACTGAAGCAAGTAATCGGATGATTGGGAAGAGAAGCGTCCGAGAGTTAGTTGCCCAGATTGACCCTAGTGAGAAGCTAGACTCTGA
AGTTGAAGATATTCTCATAGAGATAGCAGAAGATTTTGTTGATAAA
>TRINITY_DN119970_c0_g1_i8 from sample A2 / Example unspliced isoform:GGGGAACCGTTATACAAACACAAGGACGCTCGCGCTCATGCTATGCAACAAGCGAGGTTGTACCATCATACCACAAATTTTTGAAGAAGTTAAGCATATAGATCCATAGATAAATCGCCCTTATGTGAGGTCTGCGAGATTATGGTTGTGGCGGGTAGTTGTTCTCTCTATTCCTTCATTCAGTTAATGGAAGGAAGTTC
TTTATTTCATCATATTTGGGTTTTTATTTCACTTGCCTTTTAACACCAGCAGACTTCTTTCCCTGTTGGTGGAATTGGGAGGTGGAGGCCATTGGGTTTCTGGAGTTCAATCAATTCAGATGTAAAATGTGAAGGGGAGGCTTGCTATTAGGGCAGTCAAGGCACCGgtgcttgaatttcaaatatatttatattaggac
agtcaaggcaccggtgctttaatttcaaatatatttatattagATAATAAAAATGGAAGGGGAAACTGGTTCGTCATCTCAACAAGGGAGTGCTAGTATTTTGCCGTCTGCAGCATCCGCCCCTTCAGTGGTGACACCATCCACAGGGGGAGGGGGAGGGACAACTAATGCAATGGGAGTACCGACACCCAATGTGGTTT
CTGCCCAACAAAACCTTCCTCAGCAGCAGCCGAGTGCAGTGGGCAGCGGTAGAGAACCCAGTGTTGTTGCGCCCCCTCCTATTGGGGTGCAACAACAACAGCCCAATGCAGCGTCCTCTTCAGGGGGGCATCAGATGCACCCAAACATGGTGACATCATCTCCCGGCCAACCCAATTTTCAAGCAGGCCAACCGAGGCCT
GGAGTGACATCAAATAGGGGCAGGCAGCAGCAGCCATCTCCTTATTCACATTTCTCATCTCTGGCGCCATCAACTGCAATGCACCAGCAGCAGAGAGGGGGCGGCCCACTGCAAGGAGGCATGGGTACCCAGCAGAGGCCCCCGGCACTTGGAACATCCTATGCACATAATATGCAACAGCATCCAAGGGGAAGCATGAT
TGGACAACCTCAGGGCACTGGCCATCCTCCCATGGCCCCTTCTGGACAAACAGATCAACTTTCGAATATACAATCGCCATACACATCTCACCAGTCACGACAGAAACAAGGATCCATTCAGGGTACTTCATTTCAACATTCAGTATCTTCAGGGCAGACATTGCCAGGCATGCAAACAATTGGTACAGTTGGCTCTCCTG
CTGTTGGCCCTCAGATCAGACCCTCTGGAGTTTTTGGCCATAGTCAGCAAAGGCCTGGTCAAGGACAATTAAGGTCACAGTCTCCATCACAACATCAATCGCTAGCCTCTCAGAAGATGCAGGTGCAAAACTTGCAGAGAATGCCATCCATGGGATCAATGAACTCTCAATTGCCTGGTATTTCCCAAGGTGGACAGTCC
GGTGCACCCTCTAGCACACTTCCCCATCAGCAACAGTGGATGCCGACTCAAGGAAAACAAATGCACCCATCCAGTATACCTTTAACTTCACCTTCCTACCAATCACATCTTAAGCAGCAAGGTCTGCCACAGAGGTCACAACACACTCAACCACAGCAGCAGTCACTTCCATTGACACAGCAGCAGCAACTCCATCAGTT
GCAGGAGCAACATTCTCAACAATATCAACAGCAACGAATACCACAGCCTTTGCACAGTGTACAACAACAACAACAGATGCCCCGAACATCAGGGATGGCAATTCAAAAGCCCTCCACATCAGCAGGAGCCCAAGTTTCTGGTATACCGGCATCAGGAAATACAATCCCAGCTGGAAGTAATGATCAAGCAACTGAAGCAA
GTAATCGGATGATTGGGAAGAGAAGCGTCCGAGAGTTAGTTGCCCAGATTGACCCTAGTGAGAAGCTAGACTCTGAAGTTGAAGATATTCTCATAGAGATAGCAGAAGATTTTGTTGATAAAGTGACCAACTTTTCTTGTTGTTTGGCAAAACATCGAAAATCAGAAACACTGGAACCCAAGGATATATTACTACATTTA
GAAAGAAATTGGAATATGACAATTCCTGGCTTTGCTGGTGATGAATACAGGATCTACAAGAGGCCGGAAACTTCTCGTTCTTTGCCTGGGAATAAAAATATCTGATCACGTGCATTTTACTGATTGGTTGTGGGGGATTGCGTGCAGTCTGTGAACGAGAATCACAAGCAACGGCTTTCTGTGATTCGGAAGTCAGCTGC
AACTTCACAGACGGGAACTGAAACAGGAAATACTAAAGAGTCTACAGGACAAGTTACAGGGAATGCTAATTCTAAAGCGACAACAACAAAGGGATTGCGTGAAGTATCTGGTGCACAAGAAAATTCATGATTGTACTTTGTTTTCAGGCGAAGGTAGGAGGGCCTATGGTGGATTTGGTTCAGCTACATGACATAAAAAT
GCTTTCTAATATCAAGGTTGTAATGAAGTTTTTGAAACAGGAATCTGCCAGTTCCATCACGGGTAAGTCCTATTCATTTTGTACATTGCCTCTTGATTTGACATCTATAGACTAAAGAGCAACAATAAAGGTCCTCGTACTAAAAGTGGGCCTCCTGTGGTTTTTTTCTTTTCTTTGAAAGCATGGGTTTGACCACTGTT
CCCTTGTAGCTGGACTGTTTATTGTACAAATATTCTTGAAAGTTCTTTAAAAGCATGGGTCTCACCATTGTTCCCTTGTAGCTGGACTATTTTTTGCACAAATGCTCAGAGATTCTTGATGGTATAATTTGTGGAGGTTCATCACTTTCTGAGCTGTGACTTCAACATGACGAACTTGGGAATATTGGAAATGTTCTTAT
CTACGACCACATGATAAGCAATGTCTTAGAACATTAATATCGGGATTTTATCCTTAAAAGACAAGGGACAAATAAGAGCATTGCATTTAATTTATTTAGCATGGAAGAGCATGTAAAATTCCGACGTTAAATCTTTTTCTCATCCACTGAAGATATAGATCAGTATTATTTCTTGACAAAATACAAGTGCTTAGTGCTTA
GAGTTGTACTTTGTTTCATATGTGGAGCGCTTCAATTTGTTTTAGTGTATGCAGTTTAATTGCCATTATTATACCCCTGTTTTAGTGGTGGG
Intron 7 GTAAGTCCTA ... TCCCTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 93.83 | 5 | 94 | 58 |
| A2 | 100 | 0 | 66 | 47 |
| A3 | 91.74 | 5 | 52 | 59 |
| A4 | 100 | 0 | 47 | 20 |
| A5 | 100 | 0 | 34 | 13 |
| A6 | 96.23 | 9 | 228 | 231 |
| A7 | 95.44 | 16 | 361 | 308 |
| A8 | 97.27 | 13 | 520 | 405 |
| A9 | 96 | 13 | 323 | 301 |
| A10 | 94.06 | 14 | 222 | 221 |
>TRINITY_DN121354_c1_g1_i3 from sample A3 / Example spliced isoformTCATGCTATGCAACCAGCGAGGTTGTACCATCATACCACAAATTTTTGAAGAAGTTAAGCATATAGATCCATAGATAAATCGCCCTTATGTGAGGTCTGCGAGATTATGGTTGTGGCGGGTAGTTGTTCTCTCTATTCCTTCATTCAGTTAATGGAAGGAAGTTGTTTATTTCATCATAGTTGGGTTTTTATTTCACTTG
CCTTTTAACACCAGCAGACTTCTTTCCCTGTTGGTGGAATTGGGAGGTGGAGGCCATTGGGTTTCTGGAGTTCAATCAATTCAGATGTAAAATGTGAAGGGGAGGCTTGCTATTAGGGGAGGCAGTCAAGGCACCGGTGCTTGAATTTCAAATATATTTATATTAGATAATAAAAATGGAAGGGGAAACTGGTTCGTCAT
CTCAACAAGGGAGTGCTAGTATTTTGCCGTCTGCAGCATCCGCCCCTTCAGTGGTGACACCATCCACAGGGGGAGGGGGAGGGACAACTAATGCAATGGGAGTACCGACACCCAATGTGGTTTCTGCCCAACAAAACCTTCCTCAGCAGCAGCCGAGTGCAGTGGGCAGCGGTAGAGAACCCAGTGTTGTTGCGCCCCCT
CCTATTGGGGTGCAACAACAACAGCCCAATGCAGCGTCCTCTTCAGGGGGGCATCAGATGCACCCAAACATGGTGACATCATCTCCCGGCCAACCCAATTTTCAAGCAGGCCAATCGAGGCCTGGAGTGACATCAAATAGGGGCAGGCAGCAGCAGCCATCACCTTATTCACATTTCTCATCTCTGGCGCCATCAACTGC
AATGCACCAGCAGCAGAGAGGGGGCGGCCCACTGCAAGGAGGCATGGGTACCCAGCAGAGGCCCCCGGCACTTGGAACATCCTATGCACATAATATGCAACAGCATCCAAGGGGAAGCATGATTGGACAACCTCAGGGCACTGGCCATCCTCCCATGGCCCCTTCTGGACAAACAGATCAACTTTCGAATATACAATCGC
CATACACATCTCACCAGTCACGACAGAAACAAGGATCCATTCAGGGTACTTCATTTCAACATTCAGTATCTTCAGGGCAGACATTGCCAGGCATGCAAACAATTGGTACAGTTGGCTCTCCTGCTGTTAGCCCTCAGATCAGACCCTCTGGAGTTTTTGGCCATAGTCAGCAAAGGCCTGGTCAAGGACAATTAAGGTCA
CAGTCTCCATCACAACATCAATCTCTAGCCTCTCAGAAGATGCATGTGCAAAACTTGCAGAGAATGCCATCCATGGGATCAATGAACTCTCAATTGCCTGGTATTTCCCAAGGTGGACAGTCCGGTGCACCCTCTAGCGCACTTCCCCATCAGCAACAGTGGATGCCGACTCAAGGAAAACAAATGCACCCATCCAGTAT
ACCTTTAACTTCACCTTCCTACCAATCACATCTTAAGCAGCAAGGTCTGCCACAGAGGTCACAACACACTCAACCACAGCAGCAGTCACTTCCATTGACACAGCAGCAGCAACTCCATCAGTTGCAGGAGCAACATTCTCAACAATATCAACAGCAACGAATACCACAGCCTTTGCACAGTGTACAACAACAACAACAGA
TGCCCCGAACATCAGGGATGGCAATTCAAAAGCCCTCCACATCAGCAGGAGCCCAAGTTTCTGGTATACCGGCATCAGGAAATACAATCCCAGCTGGAAGTAATGATCAAGCAACTGAAGCAAGTAATCGGATGATTGGGAAGAGAAGCGTCCGAGAGTTAGTTGCCCAGATTGACCCTAGTGAGAAGCTAGACTCTGAA
GTTGAAGATATTCTCATAGAGATAGCAGAAGATTTTGTTGATAAAGTGACCAACTTTTCTTGTTGTTTGGCAAAACATCGAAAATCAGAAACACTGGAACCCAAGGATATATTACTACATTTAGAAAGGAATTGGAATATGACAATTCCTGGCTTTGCTGGTGATGAATACAGGATCTACAAGAGGCCGGAAACTTCTCG
TTCTTTGCCTGGGAATAAAAATATCTGATCACGTGCATTTTACTGATTGGTTGTGGGGGATTGCGTGCAGTCTGTGAACGAGAATCACAAGCAACGGCTTTCTGTGATTCGGAAGTCAGCTGCAACTTCACAGACGGGAACTGAAACAGGAAATACTAAAGAGTCTACAGGACAAGTTACTGGGAATGCTAATTCTAAAG
CTACAACAACAAAGGGATTGCGTGAAGTATCTGGTGCACAAGAAAATTCATGATTGTACTTTGTTTTCAGGCGAAGGAATCTGCCAGTTCCATCACGGCTGGACTATTTTTTGCACAAAT
>TRINITY_DN121354_c1_g1_i6 from sample A3 / Example unspliced isoform:TCATGCTATGCAACCAGCGAGGTTGTACCATCATACCACAAATTTTTGAAGAAGTTAAGCATATAGATCCATAGATAAATCGCCCTTATGTGAGGTCTGCGAGATTATGGTTGTGGCGGGTAGTTGTTCTCTCTATTCCTTCATTCAGTTAATGGAAGGAAGTTGTTTATTTCATCATAGTTGGGTTTTTATTTCACTTG
CCTTTTAACACCAGCAGACTTCTTTCCCTGTTGGTGGAATTGGGAGGTGGAGGCCATTGGGTTTCTGGAGTTCAATCAATTCAGATGTAAAATGTGAAGGGGAGGCTTGCTATTAGGGGAGGCAGTCAAGGCACCGGTGCTTGAATTTCAAATATATTTATATTAGATAATAAAAATGGAAGGGGAAACTGGTTCGTCAT
CTCAACAAGGGAGTGCTAGTATTTTGCCGTCTGCAGCATCCGCCCCTTCAGTGGTGACACCATCCACAGGGGGAGGGGGAGGGACAACTAATGCAATGGGAGTACCGACACCCAATGTGGTTTCTGCCCAACAAAACCTTCCTCAGCAGCAGCCGAGTGCAGTGGGCAGCGGTAGAGAACCCAGTGTTGTTGCGCCCCCT
CCTATTGGGGTGCAACAACAACAGCCCAATGCAGCGTCCTCTTCAGGGGGGCATCAGATGCACCCAAACATGGTGACATCATCTCCCGGCCAACCCAATTTTCAAGCAGGCCAATCGAGGCCTGGAGTGACATCAAATAGGGGCAGGCAGCAGCAGCCATCACCTTATTCACATTTCTCATCTCTGGCGCCATCAACTGC
AATGCACCAGCAGCAGAGAGGGGGCGGCCCACTGCAAGGAGGCATGGGTACCCAGCAGAGGCCCCCGGCACTTGGAACATCCTATGCACATAATATGCAACAGCATCCAAGGGGAAGCATGATTGGACAACCTCAGGGCACTGGCCATCCTCCCATGGCCCCTTCTGGACAAACAGATCAACTTTCGAATATACAATCGC
CATACACATCTCACCAGTCACGACAGAAACAAGGATCCATTCAGGGTACTTCATTTCAACATTCAGTATCTTCAGGGCAGACATTGCCAGGCATGCAAACAATTGGTACAGTTGGCTCTCCTGCTGTTAGCCCTCAGATCAGACCCTCTGGAGTTTTTGGCCATAGTCAGCAAAGGCCTGGTCAAGGACAATTAAGGTCA
CAGTCTCCATCACAACATCAATCTCTAGCCTCTCAGAAGATGCATGTGCAAAACTTGCAGAGAATGCCATCCATGGGATCAATGAACTCTCAATTGCCTGGTATTTCCCAAGGTGGACAGTCCGGTGCACCCTCTAGCGCACTTCCCCATCAGCAACAGTGGATGCCGACTCAAGGAAAACAAATGCACCCATCCAGTAT
ACCTTTAACTTCACCTTCCTACCAATCACATCTTAAGCAGCAAGGTCTGCCACAGAGGTCACAACACACTCAACCACAGCAGCAGTCACTTCCATTGACACAGCAGCAGCAACTCCATCAGTTGCAGGAGCAACATTCTCAACAATATCAACAGCAACGAATACCACAGCCTTTGCACAGTGTACAACAACAACAACAGA
TGCCCCGAACATCAGGGATGGCAATTCAAAAGCCCTCCACATCAGCAGGAGCCCAAGTTTCTGGTATACCGGCATCAGGAAATACAATCCCAGCTGGAAGTAATGATCAAGCAACTGAAGCAAGTAATCGGATGATTGGGAAGAGAAGCGTCCGAGAGTTAGTTGCCCAGATTGACCCTAGTGAGAAGCTAGACTCTGAA
GTTGAAGATATTCTCATAGAGATAGCAGAAGATTTTGTTGATAAAGTGACCAACTTTTCTTGTTGTTTGGCAAAACATCGAAAATCAGAAACACTGGAACCCAAGGATATATTACTACATTTAGAAAGGAATTGGAATATGACAATTCCTGGCTTTGCTGGTGATGAATACAGGATCTACAAGAGGCCGGAAACTTCTCG
TTCTTTGCCTGGGAATAAAAATATCTGATCACGTGCATTTTACTGATTGGTTGTGGGGGATTGCGTGCAGTCTGTGAACGAGAATCACAAGCAACGGCTTTCTGTGATTCGGAAGTCAGCTGCAACTTCACAGACGGGAACTGAAACAGGAAATACTAAAGAGTCTACAGGACAAGTTACTGGGAATGCTAATTCTAAAG
CTACAACAACAAAGGGATTGCGTGAAGTATCTGGTGCACAAGAAAATTCATGATTGTACTTTGTTTTCAGGCGAAGGTAGGAGGGCCTATGGTGGATTTGGTTCAGCTACATGACATAAAAATGCTTTCTAATATCAAGGTTGTAATGAAGTTTTTGAAACAGGAATCTGCCAGTTCCATCACGGgtaagtcctattcat
tttgtacattgcctcttgatttgacatctatagactaaagagcaacaataaaggtcctcgtactaaaagtgggcctcctgtggtttttttcttttctttgaaagcatgggtttgaccactgttcccttgtagctggactgtttattgtacaaatattcttgaaagttctttaaaagcatgggtctcaccattgttccctt
gtagCTGGACTATTTTTTGCACAAATGCTCAGAGATTCTTGATGGTATAATTTGTGGAGGTTCATCACTTTCTGAGCTGTGACTTCAACATGACGAACTTGGGAATATTGGAAATGTTCTTATCTACGACCACATGATAAGCAATGTCTTAGAACATTAATATCGGGATTTTATCCTTAAAAGACAAGGGACAAATAAGA
GCATTGTATTTAATTTATTTAGCATGGAAGAGCATGTAAAATTCCGACGTTAAATCTTTTTCTCATCCACTGAAGATATAGATCAGTATTATTTCTTGACAAAATACAAGTGCTTAGTGCTTAGAGTTGTACTTTGTTTCATA