sp|Q8LPT9|GWD1_CITRE ----> Alpha-glucan water dikinase, chloroplastic

Intron 1 GTTAGCTTCC ... TATTTTGTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	58.34	3	4.5	3
A2	50	2	2	0
A3	50	1	1	0
A4	100	0	6	0
A5	100	0	7	0
A6	54.55	5	6	7
A7	40	9	6	5
A8	41.67	14	10	2
A9	52.63	9	10	0
A10	72.73	3	8	1

>TRINITY_DN48266_c2_g1_i13 from sample A7 / Example spliced isoform

AGCAGGCTACCGTCTTCTGTGGTGGAAAAACATTATAGTGGGGAATATCCTGGCCCTTCTGCTGGACTTGTTCCCCTCAACATATCTACTGGTGTTTCAAATCTATCACTCCTTCGGTCCGAAAAATCTATTCTTACTAGTAAATTTTTTGACAAGGGTTTCCTCTTACCAAAAAAAATATGTTGTAAGGGGAACCCTAC
TGCGGGATGGTTTGGGCCTCACACAGTTCTGGAAATAGATCCAGCTGCTTCCAAGGTGAATGTTGTTAAATCTACAGGTGGATCTCCAACAAGGATTCATTTGCATTCATTTGCAAGTTACAGATAACAATCCATCCTTAATTCTTCTGATTGGGGTGCTCTTAATTATGGCGAGAAGAATTGGATTATTTCATCTCATA
GTCCCAATGGAACACAAGATTAAAAAAAAATAGCTTTACAGAATCCTTTTAAAAAGGTTTAAGTATAATGGCTAGAAGTTCCATGTTAACTTACCCAGGGGTGATAGTGGCACAGCACAAATATCAGTACCCGAGGAGCTTGTTCAAATACAAGC

>TRINITY_DN48266_c2_g1_i18 from sample A7 / Example unspliced isoform:

AATGAAGCATAGGAGAAGAGAGAAAATAGCAATAACAAACAATAGCAGGAATGATGATGGCGACGCTAGCGAGGACATGGTTTCTGATCAACCTATGGATATCATGTCTCAGATTGGGCATGGGCATGCCTCGTTGGCACTACCCCTCACCAGACAATCTTGTGAATGTTGTTAAATCTACAGGTGGATCTCCAACAAGG
ATTCATTTGCATTCATTTGCAAGTTACAGATAACAATCCATCCTTAATTCTTCTGATTGGGGTGCTCTTAATTATGGCGAGAAGAATTGGATTATTTCATCTCATAGTCCCAATGGAACACAAGATTAAAAAAAAATAGCTTTACAGAATCCTTTTAAAAAGgttagcttccttctcttttaacttctagatgccaagca
agtctagtattatggattttggctaacggccttaattttgctccaatttgaatttgtcatttgtttgtgagtagcatatcctatgaatctagtgtgcgcatcttgcttctcttgatttgcaatttggggaaatctctttcttgatggttgagattcttgacccaaacatatctgcgattaaatttattttgtatgaccaa
tcaagagaaaaatggtgagtgtttgttttacattgaatggtcacttccaattcaaatatttccgacattttaatatattatcgattggcattgcattcttacctaacaacaaccatgccatccagtgtataaatcattattttgtagGTTTAAGTATAATGGCTAGAAGTTCCATGTTAACTTACCCAGGGGTGATAGTG
GCACAGCACAAATATCAGTACCCGAGGAGCTTGTTCAAATACAAGC

Intron 2 GTTAGCTTCC ... TGCCATCCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	100	0	4.5	3
A2	50	2	2	0
A3	33.33	2	1	0
A4	100	0	6	0
A5	100	0	7	0
A6	54.55	5	6	7
A7	40	9	6	5
A8	41.67	14	10	2
A9	52.63	9	10	0
A10	72.73	3	8	0

>TRINITY_DN48266_c2_g1_i9 from sample A7 / Example spliced isoform

AATGAAGCATAGGAGAAGAGAGAAAATAGCAATAACAAACAATAGCAGGAATGATGATGGCGACGCTAGCGAGGACATGGTTTCTGATCAACCTATGGATATCATGTCTCAGATTGGGCATGGGCATGCCTCGTTGGCACTACCCCTCACCAGACAATCTTGTGAATGTTGTTAAATCTACAGGTGGATCTCCAACAAGG
ATTCATTTGCATTCATTTGCAAGTTACAGATAACAATCCATCCTTAATTCTTCTGATTGGGGTGCTCTTAATTATGGCGAGAAGAATTGGATTATTTCATCTCATAGTCCCAATGGAACACAAGATTAAAAAAAAATAGCTTTACAGAATCCTTTTAAAAAGTGTATAAATCATTATTTTGTAGGTTTAAGTATAATGGC
TAGAAGTTCCATGTTAACTTACCCAGGGGTGATAGTGGCACAGCACAAATATCAGTACCCGAGGAGCTTGTTCAAATACAAGC

>TRINITY_DN48266_c2_g1_i3 from sample A7 / Example unspliced isoform:

CTCATCAGTCTACATTTGAAAGAGTGAATAATAACTAATCATTTTTACATTATTATATTATCTACAACTAGTTGAGAAATTCGACCTTGATGGGTGGTCTCAGCTACAGGTGAATGTTGTTAAATCTACAGGTGGATCTCCAACAAGGATTCATTTGCATTCATTTGCAAGTTACAGATAACAATCCATCCTTAATTCTT
CTGATTGGGGTGCTCTTAATTATGGCGAGAAGAATTGGATTATTTCATCTCATAGTCCCAATGGAACACAAGATTAAAAAAAAATAGCTTTACAGAATCCTTTTAAAAAGgttagcttccttctcttttaacttctagatgccaagcaagtctagtattatggattttggctaacggccttaattttgctccaatttgaa
tttgtcatttgtttgtgagtagcatatcctatgaatctagtgtgcgcatcttgcttctcttgatttgcaatttggggaaatctctttcttgatggttgagattcttgacccaaacatatctgcgattaaatttattttgtatgaccaatcaagagaaaaatggtgagtgtttgttttacattgaatggtcacttccaatt
caaatatttccgacattttaatatattatcgattggcattgcattcttacctaacaacaaccatgccatccagTGTATAAATCATTATTTTGTAGGTTTAAGTATAATGGCTAGAAGTTCCATGTTAACTTACCCAGGGGTGATAGTGGCACAGCACAAATATCAGTACCCGAGGAGCTTGTTCAAATACAAGC