sp|Q94AT5|EXEC2_ARATH ----> Protein EXECUTER 2, chloroplastic
Intron 1 GTATTTTGAT ... GAATATGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 10.96 | 65 | 11 | 5 |
| A2 | 11.11 | 40 | 7 | 3 |
| A3 | 16.28 | 72 | 14 | 14 |
| A4 | 20.75 | 42 | 10 | 12 |
| A5 | 16.46 | 33 | 12 | 1 |
| A6 | 14.29 | 120 | 18 | 22 |
| A7 | 11.54 | 161 | 29 | 13 |
| A8 | 17 | 166 | 36 | 32 |
| A9 | 14.11 | 137 | 26 | 19 |
| A10 | 14.04 | 153 | 30 | 20 |
>TRINITY_DN39907_c0_g1_i1 from sample A8 / Example spliced isoformTAATATTTGGATAGATATTGACAAAGGAATTTGTGGGAGATTAGACAAAGGTTGAAAGCTGATATGGTCTCTCGTTCTCGTTCTCTCAGCGTCTATGTACTGAATCCAGTCGTCTCAGATAAGGCAACTAAATGCACGAGGGTTCCACTTCTTGCCCTCCGTACACTGAATTCTCTCAAGGATTCCAACCCAAAACCCGG
CGTTCGAGGGGTTTCCTTGGCCACCCATGGCCTCAATCGCCACAGTTTCGAATCCCAAGCACGTCGAATGCCATTTCCCACAGTTCATTCCGACGAGGCAATTCTGCACAGGGAGCCGCAGGGTCTCTGCAATTCCAAATTTCGCAATCTCACAGTGTAATTTATCATCGTCCCCGTGGGCTAATTGCTTGGTGCGAAGT
CTTCAGGTACCCAGGTCTTCGCCAGCTTCTTCGATGGTGAGTCGCTGCTCCAAGGAATCGCTGGCCGATCCAGAGGAATCCGGGAAATGGGTCAAGTGGGGTTTCGATTCGGGTCACAGGCAATTGCAGACGGTGGCAACCACGCTGGGCGATAGGTTGGTAGGCATGATGGAGAGAATTAAGGGTTATTTGGAAGATTA
CAAGGACAAAGACGAGGAGAAGAAATCTGAATGGGACTGGGAGAAGTGGCAGGACTATTTTGATATAGTCGAGAAAGATGAGAAATTGATATCCAGTTTGAAGCTCCGCCTAGAAGATGCTGTTGAAAGTGAGGATTTTGAGGAGGCTGCTAGGTTAAAATTGCTTATTGCAGAAAAAATGGCGTATGACACTGCTGGTG
AATTCATGAATCAGCTAACGAAAGCAATAGAGGAGGAACGCTATTGGGATGCAGCACATTTCTGGAAAGACACTGGTGCTGGATTGGTTGGATGGTGGGCCGGTTTGGCAGAAGGTGCAAATGATCCATATGGTAGAATCATCCATATTGGTTCTCAACATGGGAGATTTGTTGCCAAGAGTTATAATGCAAGGCAGCTG
GCTGCAGGAGCACCAGGCATTCCTTTGTTTGAAATCTTTGTAAAGAAAGACAGTGATCAGAAATACAAGGAGCAGGTAGTCTACTTGCAGCGGAACGGACAATCTGCAGATGCTTCCTTTTCAGTATCACATAAAGCTACTGAAGAATCAGAAACTGACTCAGAGAAAAATGATGATGCAGATGTGGGAGATGAGGGATT
GAGGCGAGTTCTTAAATTTCTTAAAGCTGGGATGCCAGGCCTAAAATTCAAGGTCTTGAAAGTTGTGACTCCAGAGCGGGCAAACACAGACATAATCTCAGGGGTTTTTGAGCAGTTAATCCAGGATGTCAATAAAGAGAAGGATGAGGAAACTACTAGTGAAGGATCTACCAGCGAAGATAAAACTGGAGGTGATCTAC
ACAATGATAGAGTAACTGTCGGAGGCAATAGCGATTTTATGCAGCTTATTGAAATTGCTGCTGCAAAAGTTGCCATTGGCACTCTTTTACAGAGTATTGCAGAAGATGCACCTCCGAGCCTTCCTGTACGTGTGCCAGCCAAAATAGAGAAAAGAGGTCGTGATTCCTTTTGTTTTCACATTAAGGATGATGGCTCTCAA
AAATCAGTGAGAGGAAAGCAAATGACACCTGCCTGGAAAGTTGCAACAATTGCAAAACAGACATTAACCGATCCCATGTCTCCTGATGTTCCAAAGGCCCCCTGGTTCATGAAAAGGGTTTCTGTAAAGGCATTAGATGATTTTGGAGAAATAATTACACTTGCAGTTAGTGAGGCGCAGAAAAGACGTGGCCTAGCTGG
GAGCACAGTATTTCATCGCATCAACATAGAAGCAGCAACTTCTGATCCACTGAATGGATTGTATACTGGTACTTTTGGTCCTTACACTTCAGAAGTAATTCAGCTAAGGCGTAGGTTTGGTCAATGGCATGATGATAATGAAGCAACTCCAAGTAAGGAGTTGAAGCTGGAATTTTTTGAGTATGTGGAAGCTGTGACAC
TAACTGGTGACCTGATTGTACCTGCAGGGCAGGTTACTTTCCGTGCAAAAATTGGCAAAGAGAACCAGCTGCCTCATCAAGACATCTTTCCAGAGCATCTTGGAGTGGTTGCATGGTATAGAGGTCAAGAGAGACGGGCACATGCTGGCTTCTGGACTGACGCGGAGCTACTGCTGATCAATAGGAAGGGTATTGGTGGT
CCACATCTTGCGTTTATGTTGTCTGCTCCCGATCGCCCCATTCTTGTATTATTCAATCGATTAAGACTTCCACAATGAGATTGAGAATACAGGAAATCCCATTGAAGACACAAGGAAATGAAAAGCTCATGTATTTCCAAGATACCTGGCCTGCAGATTCTCACATATGCCAAATCCATTTAAAGTTTTGTGGGGAAATT
GTAGGTTCTTGCTTGCAGGCAAGGGAAATCACAAAAAGAAGAAAAAAGGGTTCTTAGGCTGGAAGGTAAATTTTGTAAACTAAATGCACATGGATCAACATGTGCTGTATGTGATATCATGTATTTTTTGGATAGATATAGCCTCTTATATGGGATGATAGCTATTGTTTTGTCATTCCATGCTCTTTATATTTATCAGA
GATTGCATGTTCGAAAAAATGCTGTTCTTACTACTGTAATATGACATTGAAATCAAAGGTCAAATGCACAATGTCGGTTTCCCCTTGCATTGCAGAAGATATTTGTAATAACAAGTGATTTGTAAGAATGACCACCAATCAACGAACTTAAGTTTGCAGAAACAGGAATATGGGACCAAGAACAGCCATGGGGGGTTCCA
GTGTGGTTTCATTGTCTTGAAATAGATTTTTCATTATGTAAAACAATTACAAACGTATCTAAGGCAATTTTGCATTTCGTGATAGAATATTTGCAAACATATTTTTATAGGAGTCAGCCCCAAGTGTTAGCTCAATTTGTAGATGCTCTTGTGCTAAGTCTACAGAGTCTCAAGGTCAAATCTCATTGGGTCCTTTGGGT
CTACGAGCAGCCTATGCAGCTAATGGTCCATCCGCCTTCAATCCAGAAATTTCAGAGAATGGGGAGAGCTCAGCAAAGGCCAACCTGGTACCGGCCTCCCCATTCTTTGCTTAAATGTGTGAACGTGGGATGAGATTATTTCTTCGAAAAATACTATTTGTATGAGACAAAACTGATTCAAATTTGTTATATCAACACCA
TATGTTGCTCTTGTGCCAAGTCCACAGATATCTTTGGATCAAATCTCTTCGGCCCTTTGGGGTTTCCAACAGTGTATGCAACTGGCAGTAAATCCACCCCCCATCTGAAAATTCTGGGGAAGAAAGGGGAGAGCCTTGCATGGGCTGGCAATCCAATTGGAAAGGCTATTCAAGTTAGTATGTGTTAAGCTAATCTTGAT
TCAGTTATAGAGTAACGGAGATAACCTTGATTTGGTCATTAATGGGTTTATTGTTGGTGGTTTACGTGACCATGGTTTTGGGTAACCCATGGTCCCATGGTATGTGCTCATGGTGTTAGTATATGATGAAGCCTATTTAAAGGCATGGGTAACTCCATTGTAAAATGCGTATTGGATTGGCCATGGCTTGGTAGGATTGA
CCAAGGGTAATGAAAGATATCTTTTGAAGGTTGTCTTTCCTGATAAAGGGTTTCAAG
>TRINITY_DN39907_c0_g1_i2 from sample A8 / Example unspliced isoform:ATGTCCATTGGATGAGCTTAATCATTTTCAATATGTAATAGGGATGCCTAGTATTTTAGTTTGTGGTACTTGTATTCCACATTAACTTTAGGCTTTAGCAAGTTCTCTGGGATAGTTATTCTGTATTGTAAATCTCTCTATGTGATGTGTAGCAGAAATTTGCTGAAATTAGAATCTTGCAGGCATTAGATGATTTTGGA
GAAATAATTACACTTGCAGTTAGTGAGGCGCAGAAAAGACGTGGCCTAGCTGGGAGCACAGTATTTCATCGCATCAACATAGAAGCAGCAACTTCTGATCCACTGAATGgtattttgattgagcactaggttaaatttcatcatatatagttcccatgtaatgcagaccatggataacttgcttatgatagatttttcat
ggggaatatgtagGATTGTATACTGGTACTTTTGGTCCTTACACTTCAGAAGTAATTCAGCTAAGGCGTAGGTTTGGTCAATGGCATGATGATAATGAAGCAACTCCAAGTAAGGAGTTGAAGCTGGAATTTTTTGAGTATGTGGAAGCTGTGACACTAACTGGTGACCTGATTGTACCTGCAGGGCAGGTGTAGTGCTT
TCACCAAATGCTGTAGCATGGAAAATTGTCTTTCTGTTTTATCATAATTAGTGTTTTGAATTGTAATTTAGTCCTATAACTGACATTCATTACAGTTATCTAATACTCTCAGATGTTTAGCACAGGTTACTTTCCGTGCAAAAATTGGCAAAGAGAACCAGCTGCCTCATCAAGACATCTTTCCAGAGCATCTTGGAGTG
GTACTATTTTGAGTCTGAAGATATTTGAGGTTTTATTTTTATATCACTTTATAGTTGGCATTTAGTTTGTGGACGTGATTCAGGTTGCATGGTATAGAGGTCAAGAGAGACGGGCACATGCTGGCTTCTGGACTGACGCGGAGCTACTGCTGATCAATAGGAAGGGTATTGGTGGTCCACATCTTGCGTTTATGTTGTCT
GCTCCCGATCGCCCCATTCTTGTATTATTCAATCGATTAAGACTTCCACAATGAGATTGAGAATACAGGAAATCCCATTGAAGACACAAGGAAATGAAAAGCTCATGTATTTCCAAGATACCTGGCCTGCAGATTCTCACATATGCCAAATCCATTTAAAGTTTTGTGGGGAAATTGTAGGTTCTTGCTTGCAGGCAAGG
GAAATCACAAAAAGAAGAAAAAAGGGTTCTTAGGCTGGAAGGTAAATTTTGTAAACTAAATGCACATGGATCAACATGTGCTGTATGTGATATCATGTATTTTTTGGATAGATATAGCCTCTTATATGGGATGATAGCTATTGTTTTGTCATTCCATGCTCTTTATATTTATCAGAGATTGCATGTTCGAAAAAATGCTG
TTCTTACTACTGTAATATGACATTGAAATCAAAGGTCAAATGCACAATGTCGGTTTCCCCTTGCATTGCAGAAGATATTTGTAATAACAAGTGATTTGTAAGAATGACCACCAATCAACGAACTTAAGTTTGCAGAAACAGGAATATGGGACCAAGAACAGCCATGGGGGGTTCCAGTGTGGTTTCATTGTCTTGAAATA
GATTTTTCATTATGTAAAACAATTACAAACGTATCTAAGGCAATTTTGCATTTCGTGATAGAATATTTGCAAACATATTTTTATAGGAGTCAGCCCCAAGTGTTAGCTCAATTTGTAGATGCTCTTGTGCTAAGTCTACAGAGTCTCAAGGTCAAATCTCATTGGGTCCTTTGGGTCTACGAGCAGCCTATGCAGCTAAT
GGTCCATCCGCCTTCAATCCAGAAATTTCAGAGAATGGGGAGAGCTCAGCAAAGGCCAACCTGGTACCGGCCTCCCCATTCTTTGCTTAAATGTGTGAACGTGGGATGAGATTATTTCTTCGAAAAATACTATTTGTATGAGACAAAACTGATTCAAATTTGTTATATCAACACCATATGTTGCTCTTGTGCCAAGTCCA
CAGATATCTTTGGATCAAATCTCTTCGGCCCTTTGGGGTTTCCAACAGTGTATGCAACTGGCAGTAAATCCACCCCCCATCTGAAAATTCTGGGGAAGAAAGGGGAGAGCCTTGCATGGGCTGGCAATCCAATTGGAAAGGCTATTCAAGTTAGTATGTGTTAAGCTAATCTTGATTCAGTTATAGAGTAACGGAGATAA
CCTTGATTTGGTCATTAATGGGTTTATTGTTGGTGGTTTACGTGACCATGGTTTTGGGTAACCCATGGTCCCATGGTATGTGCTCATGGTGTTAGTATATGATGAAGCCTATTTAAAGGCATGGGTAACTCCATTGTAAAATGCGTATTGGATTGGCCATGGCTTGGTAGGATTGACCAAGGGTAATGAAAGATATCTTT
TGAAGGTTGTCTTTCCTGATAAAGGGTTTCAAG
Intron 2 GTGAATACAT ... ATGCATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 9.46 | 46 | 7 | 5.3 |
| A2 | 8.07 | 64.3 | 5.7 | 13.3 |
| A3 | 7.07 | 53.7 | 4.3 | 11.3 |
| A4 | 10.69 | 17.7 | 2.3 | 0.7 |
| A5 | 12.56 | 19.3 | 3.3 | 6.7 |
| A6 | 6.14 | 198.3 | 14.3 | 45.3 |
| A7 | 5.09 | 235.7 | 13.7 | 60.7 |
| A8 | 6.04 | 362.7 | 27.3 | 80 |
| A9 | 6.12 | 220.7 | 16.3 | 50.7 |
| A10 | 5.55 | 152 | 10 | 41 |
>TRINITY_DN43105_c2_g1_i2 from sample A9 / Example spliced isoformTGACAAAGGAATTTGTGGGAGATTAGACAAAGGTTGAAAGCTGATATGGTCTCTCGTTCTCGTTCTCTCAGCGTCTATGTACTGAATCCAGTCGTCTCAGATAAGGCATCTAAATGCACGAGGGTTCCACTTCTTGCCCTCCGTACACTGAATTCTCTCAAGGATTCCAACCCAAAACCCGGCGTTCGAGGGGTTTCCTT
GGCCACCCATGGCCTCAATCGCCACAGTTTCGAATCCCAAGCACGTCGAATGCCATTTCCCACAGTTCATTCCGACGAGGCAATTCTGCACAGGGAGCCGCAGGGTCTCTGCAATTCCAAATTTCGCAATCTCACAGTGTAATTTATCATCGTCCCCGTGGGCTAATTGCTTGGTGCGAAGTCTTCAGGTACCCAGGTCT
TCGCCAGCTTCTTCGATGGTGAGTCGCTGCTCCAAGGAATCGCTGGCCGATCCAGAGGAATCCGGGAAATGGGTCAAGTGGGGTTTCGATTCGGGTCACAGGCAATTGCAGACGGTGGCAACCACGCTGGGCGATAGGTTGGTAGGCATGATGGAGAGAATTAAGGGTTATTTGGAAGATTACAAGGACAAAGACGAGGA
GAAGAAATCTGAATGGGACTGGGAGAAGTGGCAGGACTATTTTGATATAGTCGAGAAAGATGAGAAATTGATATCCAGTTTGAAGCTCCGCCTAGAAGATGCTGTTGAAAGTGAGGATTTTGAGGAGGCTGCTAGGTTAAAATTGCTTATTGCAGAAAAAATGGCGTATGACACTGCTGGTGAATTCATGAATCAGCTAA
CGAAAGCAATAGAGGAGGAACGCTATTGGGATGCAGCACATTTCTGGAAAGACACTGGTGCTGGATTGGTTGGATGGTGGGCCGGTTTGGCAGAAGGTGCAAATGATCCATATGGTAGAATCATCCATATTGGTTCTCAACATGGGAGATTTGTTGCCAAGAGTTATAATGCAAGGCAGCTGGCTGCAGGAGCACCAGGC
ATTCCTTTGTTTGAAATCTTTGTAAAGAAAGACAGTGATCAGAAATACAAGGAGCAGGTAGTCTACTTGCAGCGGAACGGACAATCTGCAGATGCTTCCTTTTCAGTATCACATAAAGCTACTGAAGAATCAGAAACTGACTCAGAGAAAAATGATGATGCAGATGTGGGAGATGAGGGATTGAGGCGAGTTCTTAAATT
TCTTAAAGCTGGGATGCCAGGCCTAAAATTCAAGGTCTTGAAAGTTGTGACTCCAGAGCGGGCAAACACAGACATAATCTCAGGGGTTTTTGAGCAGTTAATCCAGGATGTCAATAAAGAGAAGGATGAGGAAACTACTAGTGAAGGATCTACCAGCGAAGATAAAACTGGAGGTGATCTACACAATGATAGAGTAACTG
TCGGAGGCAATAGCGATTTTATGCAGCTTATTGAAATTGCTGCTGCAAAAGTTGCCATTGGCACTCTTTTACAGAGTATTGCAGAAGATGCACCTCCGAGCCTTCCTGTACGTGTGCCAGCCAAAATAGAGAAAAGAGGTCGTGATTCCTTTTGTTTTCACATTAAGGATGATGGCTCTCAAAAATCAGTGAGAGGAAAG
CAAATGACACCTGCCTGGAAAGTTGCAACAATTGCAAAACAGACATTAACCGATCCCATGTCTCCTGATGTTCCAAAGGCCCCCTGGTTCATGAAAAGGGTTTCTGTAAAGGCATTAGATGATTTTGGAGAAATAATTACACTTGCAGTTAGTGAGGCGCAGAAAAGACGTGGCCTAGCTGGGAGCACAGTATTTCATCG
CATCAACATAGAAGCAGCAACTTCTGATCCACTGAATGGATTGTATACTGGTACTTTTGGTCCTTACACTTCAGAAGTAATTCAGCTAAGGCGTAGGTTTGGTCAATGGCATGATGATAATGAAGCAACTCCAAGTAAGGAGTTGAAGCTGGAATTTTTTGAGTATGTGGAAGCTGTGACACTAACTGGTGACCTGATTG
TACCTGCAGGGCAGGTTACTTTCCGTGCAAAAATTGGCAAAGAGAACCAGCTGCCTCATCAAGACATCTTTCCAGAGCATCTTGGAGTGGTTGCATGGTATAGAGGTCAAGAGAGACGGGCACATGCTGGCTTCTGGACTGACGCGGAGCTACTGCTGATCAATAGGAAGGGTATTGGTGGTCCACATCTTGCGTTTATG
TTGTCTGCTCCCGATCGCCCCATTCTTGTATTATTCAATCGATTAAGACTTCCACAATGAGATTGAGAATACAGGAAATCCCATTGAAGACACAAGGAAATGAAAAGCTCATGTATTTCCAAGATACCTGGCCTGCAGATTCTCACATATGCCAAATCCATTTAAAGTTTTGTGGGGAAATTGTAGGTTCTTGCTTGCAG
GCAAGGGAAATCACAAAAAGAAGAAAAAAGGGTTCTTAGGCTGGAAGGTAAATTTTGTAAACTAAATGCACATGGATCAACATGTGCTGTATGTGATATCATGTATTTTTTGGATAGATATAGCCTCTTATATGGGATGATAGCTATTGTTTTGTCATTCCATGCTCTTTATATTTATCAGAGATTGCATGTTCGAAAAA
ATGCTGTTCTTACTACTGTAATATGACATTGAAATCAAAGGTCAAATGCACAATGTCGGTTTCCCCTTGCATTGCAGAAGATATTTGTAATAACAAGTGATTTGTAAGAATGACCACCAATCAACGAACTTAAGTTTGCAGAAACAGGAATATGGGACCAAGAACAGCCATGGGGGGTTCCAGTGTGGTTTCATTGTCTT
GAAATAGATTTTTCATTATGTAAAACAATTACAAACGTATCTAAGGCAATTTTGCATTTCGTGATAGAATATTTGCAAACATATTTTTATAGGAGTCAGCCCCAAGTGTTAGCTCAATTTGTAGATGCTCTTGTGCTAAGTCTACAGAGTCTCAAGGTCAAATCTCATTGGGTCCTTTGGGTCTACGAGCAGCCTATGCA
GCTAATGGTCCATCCGCCTTCAATCCAGAAATTTCAGAGAATGGGGAGAGCTCAGCAAAGGCCAACCTGGTACCGGCCTCCCCATTCTTTGCTTAAATGTGTGAACGTGGGATGAGATTATTTCTTCGAAAAATACTATTTGTATGAGACAAAACTGATTCAAATTTGTTATATCAACACCATATGTTGCTCTTGTGCCA
AGTCCACAGATATCTTTGGATCAAATCTCTTCGGCCCTTTGGGGTTTCCAACAGTGTATGCAACTGGCAGTAAATCCACCCCCCATCTGAAAATTCTGGGGAAGAAAGGGGAGAGCCTTGCATGGGCTGGCAATCCAATTGGAAAGGCTATTCAAGTTAGTATGTGTTAAGCTAATCTTGATTCAGTTATAGAGTAACGG
AGATAACCTTGATTTGGTCATTAATGGGTTTATTGTTGGTGGTTTACGTGACCATGGTTTTGGGTAACCCATGGTATTTTCCCATGGTATTAGTATGTGATGAAGTCTACTTTAAGGTTTGAGTAACTCCATTGTAAAGTGCCCTATGTGGTCGATGTTGGCAAGATTAGCCG
>TRINITY_DN43105_c2_g1_i1 from sample A9 / Example unspliced isoform:ACTATTTTGAGTCTGAAGATATTTGAGGTTTTATTTTTATATCACTTTATAGTTGGCATTTAGTTTGTGGACGTGATTCAGGTTGCATGGTATAGAGGTCAAGAGAGACGGGCACATGCTGGCTTCTGGACTGACGCGGAGCTACTGCTGATCAATAGGAAGgtgaatacatactgttggtcagactgcagatttttagt
gcaagaaaggatgattagatttcaagtggtgagaatcgagattgactaatgcttgatgcattcagGGTATTGGTGGTCCACATCTTGCGTTTATGTTGTCTGCTCCCGATCGCCCCATTCTTGTATTATTCAATCGATTAAGACTTCCACAATGAGATTGAGAATACAGGAAATCCCATTGAAGACACAAGGAAATGAAA
AGCTCATGTATTTCCAAGATACCTGGCCTGCAGATTCTCACATATGCCAAATCCATTTAAAGTTTTGTGGGGAAATTGTAGGTTCTTGCTTGCAGGCAAGGGAAATCACAAAAAGAAGAAAAAAGGGTTCTTAGGCTGGAAGGTAAATTTTGTAAACTAAATGCACATGGATCAACATGTGCTGTATGTGATATCATGTA
TTTTTTGGATAGATATAGCCTCTTATATGGGATGATAGCTATTGTTTTGTCATTCCATGCTCTTTATATTTATCAGAGATTGCATGTTCGAAAAAATGCTGTTCTTACTACTGTAATATGACATTGAAATCAAAGGTCAAATGCACAATGTCGGTTTCCCCTTGCATTGCAGAAGATATTTGTAATAACAAGTGATTTGT
AAGAATGACCACCAATCAACGAACTTAAGTTTGCAGAAACAGGAATATGGGACCAAGAACAGCCATGGGGGGTTCCAGTGTGGTTTCATTGTCTTGAAATAGATTTTTCATTATGTAAAACAATTACAAACGTATCTAAGGCAATTTTGCATTTCGTGATAGAATATTTGCAAACATATTTTTATAGGAGTCAGCCCCAA
GTGTTAGCTCAATTTGTAGATGCTCTTGTGCTAAGTCTACAGAGTCTCAAGGTCAAATCTCATTGGGTCCTTTGGGTCTACGAGCAGCCTATGCAGCTAATGGTCCATCCGCCTTCAATCCAGAAATTTCAGAGAATGGGGAGAGCTCAGCAAAGGCCAACCTGGTACCGGCCTCCCCATTCTTTGCTTAAATGTGTGAA
CGTGGGATGAGATTATTTCTTCGAAAAATACTATTTGTATGAGACAAAACTGATTCAAATTTGTTATATCAACACCATATGTTGCTCTTGTGCCAAGTCCACAGATATCTTTGGATCAAATCTCTTCGGCCCTTTGGGGTTTCCAACAGTGTATGCAACTGGCAGTAAATCCACCCCCCATCTGAAAATTCTGGGGAAGA
AAGGGGAGAGCCTTGCATGGGCTGGCAATCCAATTGGAAAGGCTATTCAAGTTAGTATGTGTTAAGCTAATCTTGATTCAGTTATAGAGTAACGGAGATAACCTTGATTTGGTCATTAATGGGTTTATTGTTGGTGGTTTACGTGACCATGGTTTTGGGTAACCCATGGTATTTTCCCATGGTATTAGTATGTGATGAAG
TCTACTTTAAGGTTTGAGTAACTCCATTGTAAAGTGCCCTATGTGGTCGATGTTGGCAAGATTAGCCG
Intron 3 GTACTATTTT ... CGTGATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.27 | 49 | 0 | 9.3 |
| A2 | 30.5 | 24 | 1 | 11.3 |
| A3 | 20.62 | 39 | 8 | 10.4 |
| A4 | 13.26 | 21 | 3 | 3.3 |
| A5 | 5.26 | 18 | 2 | 1 |
| A6 | 16.08 | 121 | 5 | 24.5 |
| A7 | 10.85 | 135 | 0 | 17.1 |
| A8 | 11.02 | 241 | 2 | 31.8 |
| A9 | 15.15 | 171 | 6 | 32.4 |
| A10 | 12.43 | 104 | 1 | 15.8 |
>TRINITY_DN115481_c7_g1_i1 from sample A2 / Example spliced isoformAACTAATATTTGGATAGATATTGACAAAGGAATTTGTGGGAGATTAGCCAAAGGTTGAAAGCTGATATGGTCTCTCGTTCTCGTTCTCTCAGCGTCTATGTACTGAATCCAGTCGTCTCAGATAAGGCAACTAAATGCACGAGGGTTCCACTTCTTGCCCTCCGTACACTGAATTCTCTCAAGGATTCCAACCCAAAACC
CGGCGTTCGAGGGGTTTCCTTGGCCACCCATGGCCTCAATCGCCACAGTTTCGAATCCCAAGCACGTCGAATGCCATTTCCCACAGTTCATTCCGACGAGGCAATTCTGCACAGGGAGCCGCAGGGTCTCTGCAATTCCAAATTTCGCAATCTCACAGTGTAATTTATCATCGTCCCCGTGGGCTAATTGCTTGGTGCGA
AGTCTTCAGGTACCCAGGTCTTCGCCAGCTTCTTCGATGGTGAGTCGCTGCTCCAAGGAATCGCTGGCCGATCCAGAGGAATCCGGGAAATGGGTCAAGTGGGGTTTCGATTCGGGTCACAGGCAATTGCAGACGGTGGCAACCACGCTGGGCGATAGGTTGGTAGGCATGATGGAGAGAATTAAGGGTTATTTGGAAGA
TTACAAGGACAAAGACGAGGAGAAGAAATCTGAATGGGACTGGGAGAAGTGGCAGGACTATTTTGATATAGTCGAGAAAGATGAGAAATTGATATCCAGTTTGAAGCTCCGCCTAGAAGATGCTGTTGAAAGTGAGGATTTTGAGGAGGCTGCTAGGTTAAAATTGCTTATTGCAGAAAAAATGGCGTATGACACTGCTG
GTGAATTCATGAATCAGCTAACGAAAGCAATAGAGGAGGAACGCTATTGGGATGCAGCACATTTCTGGAAAGACACTGGTGCTGGATTGGTTGGATGGTGGGCCGGTTTGGCAGAAGGTGCAAATGATCCATATGGTAGAATCATCCATATTGGTTCTCAACATGGGAGATTTGTTGCCAAGAGTTATAATGCAAGGCAG
CTGGCTGCAGGAGCACCAGGCATTCCTTTGTTTGAAATCTTTGTAAAGAAAGACAGTGATCAGAAATACAAGGAGCAGGTAGTCTACTTGCAGCGGAACGGACAATCTGCAGATGCTTCCTTTTCAGTATCACATAAAGCTACTGAAGAATCAGAAACTGACTCAGAGAAAAATGATGACGCAGATGTGGGAGATGAGGG
ATTGAGGCGAGTTCTTAAATTTCTTAAAGCTGGGATGCCTGGCCTAAAATTCAAGGTCTTGAAAGTTGTGACTCCAGAGCGGGCAAACACAGACATAATCTCAGGGGTTTTTGAGCAGTTAATCCAGGATGTCAATAAAGAGAAGGATGAGGAAACTACTAGTGAAGGATCTACCAGCGAAGATAAAACTGGAGGTGATC
TACACAATGATAGAGTAACTGTCGGAGGCAATAGCGATTTTATGCAGCTTATTGAAATTGCTGCTGCAAAAGTTGCCATTGGCACTCTTTTACAGAGTATTGCAGAAGATGCACCTCCGAGCCTTCCTGTACGTGTGCCAGCCAAAATAGAGAAAAGAGGTCGTGATTCCTTTTGTTTTCACATTAAGGATGATGGCTCT
CAAAAATCAGTGAGAGGAAAGCAAATGACACCTGCCTGGAAAGTTGCAACAATTGCAAAACAGACATTAACCGATCCCATGTCTCCTGATGTTCCAAAGGCCCCCTGGTTCATGAAAAGGGTTTCTGTAAAGGCATTAGATGATTTTGGAGAAATAATTACACTTGCAGTTAGTGAGGCGCAGAAAAGACGTGGCCTAGC
TGGGAGCACAGTATTTCATCGCATCAACATAGAAGCAGCAACTTCTGATCCACTGAATGGATTGTATACTGGTACTTTTGGTCCTTACACTTCAGAAGTAATTCAGCTAAGGCGTAGGTTTGGTCAATGGCATGATGATAATGAAGCAACTCCAAGTAAGGAGTTGAAGCTGGAATTTTTTGAGTATGTGGAAGCTGTGA
CACTAACTGGTGACCTGATTGTACCTGCAGGGCAGGTTACTTTCCGTGCAAAAATTGGCAAAGAGAACCAGCTGCCTCATCAAGACATCTTTCCAGAGCATCTTGGAGTGGTTGCATGGTATAGAGGTCAAGAGAGACGGGCACATGCTGGCTTCTGGACTGACGCGGAGCTACTGCTGATCAATAGGAAGGGTATTGGT
GGTCCACATCTTGCGTTTATGTTGTCTGCTCCCGATCGCCCCATTCTTGTATTATTCAATCGATTAAGACTTCCACAATGAGATTGAGAATACAGGAAATCCCATTGAAGACACAAGGAAATGAAAAGCTCATGTATTTCCAAGATACCTGGCCTGCAGATTCTCACATATGCCAAATCCATTTAAAGTTTTGTGGGGAA
ATTGTAGGTTCTTGCTTGCAGGCAAGGGAAATCACAAAAAGAAGAAAAAAGGGTTCTTAGGCTGGAAGGTAAATTTTGTAAACTAAATGCACATGGATCAACATGTGCTGTATGTGATATCATGTATTTTTTGGATAGATATAGCCTCTTATATGGGATGATAGCTATTGTTTTGTCATTCCATGCTCTTTATATTTATC
AGAGATTGCATGTTCGAAAAAATGCTGTTCTTACTACTGTAATATGACATTGAAATCAAAGGTCAAATGCACAATGTCGGTTTCCCCTTGCATTGCAGAAGATATTTGTAATAACAAGTGATTTGTAAGAATGACCACCAATCAACGAACTTAAGTTTGCAGAAACAGGAATATGGGACCAAGAACAGCCATGGGGGGTT
CCAGTGTGGTTTCATTGTCTTGAAATAGATTTTTCATTATGTAAAACAATTACAAACGTATCTAAGGCAATTTTGCATTTCGTGATAGAATATTTGCAAACATATTTTTATAGGAGTCAGCCCCAAGTGTTAGCTCAATTTGTAGATGCTCTTGTGCTAAGTCTACAGAGTCTCAAGG
>TRINITY_DN115481_c7_g1_i4 from sample A2 / Example unspliced isoform:AACTAATATTTGGATAGATATTGACAAAGGAATTTGTGGGAGATTAGCCAAAGGTTGAAAGCTGATATGGTCTCTCGTTCTCGTTCTCTCAGCGTCTATGTACTGAATCCAGTCGTCTCAGATAAGGCAACTAAATGCACGAGGGTTCCACTTCTTGCCCTCCGTACACTGAATTCTCTCAAGGATTCCAACCCAAAACC
CGGCGTTCGAGGGGTTTCCTTGGCCACCCATGGCCTCAATCGCCACAGTTTCGAATCCCAAGCACGTCGAATGCCATTTCCCACAGTTCATTCCGACGAGGCAATTCTGCACAGGGAGCCGCAGGGTCTCTGCAATTCCAAATTTCGCAATCTCACAGTGTAATTTATCATCGTCCCCGTGGGCTAATTGCTTGGTGCGA
AGTCTTCAGGTACCCAGGTCTTCGCCAGCTTCTTCGATGGTGAGTCGCTGCTCCAAGGAATCGCTGGCCGATCCAGAGGAATCCGGGAAATGGGTCAAGTGGGGTTTCGATTCGGGTCACAGGCAATTGCAGACGGTGGCAACCACGCTGGGCGATAGGTTGGTAGGCATGATGGAGAGAATTAAGGGTTATTTGGAAGA
TTACAAGGACAAAGACGAGGAGAAGAAATCTGAATGGGACTGGGAGAAGTGGCAGGACTATTTTGATATAGTCGAGAAAGATGAGAAATTGATATCCAGTTTGAAGCTCCGCCTAGAAGATGCTGTTGAAAGTGAGGATTTTGAGGAGGCTGCTAGGTTAAAATTGCTTATTGCAGAAAAAATGGCGTATGACACTGCTG
GTGAATTCATGAATCAGCTAACGAAAGCAATAGAGGAGGAACGCTATTGGGATGCAGCACATTTCTGGAAAGACACTGGTGCTGGATTGGTTGGATGGTGGGCCGGTTTGGCAGAAGGTGCAAATGATCCATATGGTAGAATCATCCATATTGGTTCTCAACATGGGAGATTTGTTGCCAAGAGTTATAATGCAAGGCAG
CTGGCTGCAGGAGCACCAGGCATTCCTTTGTTTGAAATCTTTGTAAAGAAAGACAGTGATCAGAAATACAAGGAGCAGGTAGTCTACTTGCAGCGGAACGGACAATCTGCAGATGCTTCCTTTTCAGTATCACATAAAGCTACTGAAGAATCAGAAACTGACTCAGAGAAAAATGATGACGCAGATGTGGGAGATGAGGG
ATTGAGGCGAGTTCTTAAATTTCTTAAAGCTGGGATGCCTGGCCTAAAATTCAAGGTCTTGAAAGTTGTGACTCCAGAGCGGGCAAACACAGACATAATCTCAGGGGTTTTTGAGCAGTTAATCCAGGATGTCAATAAAGAGAAGGATGAGGAAACTACTAGTGAAGGATCTACCAGCGAAGATAAAACTGGAGGTGATC
TACACAATGATAGAGTAACTGTCGGAGGCAATAGCGATTTTATGCAGCTTATTGAAATTGCTGCTGCAAAAGTTGCCATTGGCACTCTTTTACAGAGTATTGCAGAAGATGCACCTCCGAGCCTTCCTGTACGTGTGCCAGCCAAAATAGAGAAAAGAGGTCGTGATTCCTTTTGTTTTCACATTAAGGATGATGGCTCT
CAAAAATCAGTGAGAGGAAAGCAAATGACACCTGCCTGGAAAGTTGCAACAATTGCAAAACAGACATTAACCGATCCCATGTCTCCTGATGTTCCAAAGGCCCCCTGGTTCATGAAAAGGGTTTCTGTAAAGGCATTAGATGATTTTGGAGAAATAATTACACTTGCAGTTAGTGAGGCGCAGAAAAGACGTGGCCTAGC
TGGGAGCACAGTATTTCATCGCATCAACATAGAAGCAGCAACTTCTGATCCACTGAATGGATTGTATACTGGTACTTTTGGTCCTTACACTTCAGAAGTAATTCAGCTAAGGCGTAGGTTTGGTCAATGGCATGATGATAATGAAGCAACTCCAAGTAAGGAGTTGAAGCTGGAATTTTTTGAGTATGTGGAAGCTGTGA
CACTAACTGGTGACCTGATTGTACCTGCAGGGCAGGTGTAGTGCTTTCACCAAATGCTGTAGCATGGAAAATTGTCTTTCTGTTTTATCATAATTAGTGTTTTGAATTGTAATTTAGTCCTATAACTGACATTCATTACAGTTATCTAATACTCTCAGATGTTTAGCACAGGTTACTTTCCGTGCAAAAATTGGCAAAGA
GAACCAGCTGCCTCATCAAGACATCTTTCCAGAGCATCTTGGAGTGgtactattttgagtctgaagatatttgaggttttatttttatatcactttatagttggcatttagtttgtggacgtgattcagGTTGCATGGTATAGAGGTCAAGAGAGACGGGCACATGCTGGCTTCTGGACTGACGCGGAGCTACTGCTGAT
CAATAGGAAGGGTATTGGTGGTCCACATCTTGCGTTTATGTTGTCTGCTCCCGATCGCCCCATTCTTGTATTATTCAATCGATTAAGACTTCCACAATGAGATTGAGAATACAGGAAATCCCATTGAAGACACAAGGAAATGAAAAGCTCATGTATTTCCAAGATACCTGGCCTGCAGATTCTCACATATGCCAAATCCA
TTTAAAGTTTTGTGGGGAAATTGTAGGTTCTTGCTTGCAGGCAAGGGAAATCACAAAAAGAAGAAAAAAGGGTTCTTAGGCTGGAAGGTAAATTTTGTAAACTAAATGCACATGGATCAACATGTGCTGTATGTGATATCATGTATTTTTTGGATAGATATAGCCTCTTATATGGGATGATAGCTATTGTTTTGTCATTC
CATGCTCTTTATATTTATCAGAGATTGCATGTTCGAAAAAATGCTGTTCTTACTACTGTAATATGACATTGAAATCAAAGGTCAAATGCACAATGTCGGTTTCCCCTTGCATTGCAGAAGATATTTGTAATAACAAGTGATTTGTAAGAATGACCACCAATCAACGAACTTAAGTTTGCAGAAACAGGAATATGGGACCA
AGAACAGCCATGGGGGGTTCCAGTGTGGTTTCATTGTCTTGAAATAGATTTTTCATTATGTAAAACAATTACAAACGTATCTAAGGCAATTTTGCATTTCGTGATAGAATATTTGCAAACATATTTTTATAGGAGTCAGCCCCAAGTGTTAGCTCAATTTGTAGATGCTCTTGTGCTAAGTCTACAGAGTCTCAAGG
Intron 4 GTATGTACAT ... ATATGACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.5 | 56 | 11 | 5 |
| A2 | 20.22 | 71 | 25 | 11 |
| A3 | 16.32 | 100 | 17 | 22 |
| A4 | 10 | 27 | 3 | 3 |
| A5 | 21.31 | 24 | 9 | 4 |
| A6 | 13.36 | 321 | 48 | 51 |
| A7 | 15.47 | 396 | 89 | 56 |
| A8 | 14.99 | 553 | 98 | 97 |
| A9 | 16.02 | 351.3 | 82 | 52 |
| A10 | 13.54 | 233 | 45 | 28 |
>TRINITY_DN115481_c7_g1_i1 from sample A2 / Example spliced isoformAACTAATATTTGGATAGATATTGACAAAGGAATTTGTGGGAGATTAGCCAAAGGTTGAAAGCTGATATGGTCTCTCGTTCTCGTTCTCTCAGCGTCTATGTACTGAATCCAGTCGTCTCAGATAAGGCAACTAAATGCACGAGGGTTCCACTTCTTGCCCTCCGTACACTGAATTCTCTCAAGGATTCCAACCCAAAACC
CGGCGTTCGAGGGGTTTCCTTGGCCACCCATGGCCTCAATCGCCACAGTTTCGAATCCCAAGCACGTCGAATGCCATTTCCCACAGTTCATTCCGACGAGGCAATTCTGCACAGGGAGCCGCAGGGTCTCTGCAATTCCAAATTTCGCAATCTCACAGTGTAATTTATCATCGTCCCCGTGGGCTAATTGCTTGGTGCGA
AGTCTTCAGGTACCCAGGTCTTCGCCAGCTTCTTCGATGGTGAGTCGCTGCTCCAAGGAATCGCTGGCCGATCCAGAGGAATCCGGGAAATGGGTCAAGTGGGGTTTCGATTCGGGTCACAGGCAATTGCAGACGGTGGCAACCACGCTGGGCGATAGGTTGGTAGGCATGATGGAGAGAATTAAGGGTTATTTGGAAGA
TTACAAGGACAAAGACGAGGAGAAGAAATCTGAATGGGACTGGGAGAAGTGGCAGGACTATTTTGATATAGTCGAGAAAGATGAGAAATTGATATCCAGTTTGAAGCTCCGCCTAGAAGATGCTGTTGAAAGTGAGGATTTTGAGGAGGCTGCTAGGTTAAAATTGCTTATTGCAGAAAAAATGGCGTATGACACTGCTG
GTGAATTCATGAATCAGCTAACGAAAGCAATAGAGGAGGAACGCTATTGGGATGCAGCACATTTCTGGAAAGACACTGGTGCTGGATTGGTTGGATGGTGGGCCGGTTTGGCAGAAGGTGCAAATGATCCATATGGTAGAATCATCCATATTGGTTCTCAACATGGGAGATTTGTTGCCAAGAGTTATAATGCAAGGCAG
CTGGCTGCAGGAGCACCAGGCATTCCTTTGTTTGAAATCTTTGTAAAGAAAGACAGTGATCAGAAATACAAGGAGCAGGTAGTCTACTTGCAGCGGAACGGACAATCTGCAGATGCTTCCTTTTCAGTATCACATAAAGCTACTGAAGAATCAGAAACTGACTCAGAGAAAAATGATGACGCAGATGTGGGAGATGAGGG
ATTGAGGCGAGTTCTTAAATTTCTTAAAGCTGGGATGCCTGGCCTAAAATTCAAGGTCTTGAAAGTTGTGACTCCAGAGCGGGCAAACACAGACATAATCTCAGGGGTTTTTGAGCAGTTAATCCAGGATGTCAATAAAGAGAAGGATGAGGAAACTACTAGTGAAGGATCTACCAGCGAAGATAAAACTGGAGGTGATC
TACACAATGATAGAGTAACTGTCGGAGGCAATAGCGATTTTATGCAGCTTATTGAAATTGCTGCTGCAAAAGTTGCCATTGGCACTCTTTTACAGAGTATTGCAGAAGATGCACCTCCGAGCCTTCCTGTACGTGTGCCAGCCAAAATAGAGAAAAGAGGTCGTGATTCCTTTTGTTTTCACATTAAGGATGATGGCTCT
CAAAAATCAGTGAGAGGAAAGCAAATGACACCTGCCTGGAAAGTTGCAACAATTGCAAAACAGACATTAACCGATCCCATGTCTCCTGATGTTCCAAAGGCCCCCTGGTTCATGAAAAGGGTTTCTGTAAAGGCATTAGATGATTTTGGAGAAATAATTACACTTGCAGTTAGTGAGGCGCAGAAAAGACGTGGCCTAGC
TGGGAGCACAGTATTTCATCGCATCAACATAGAAGCAGCAACTTCTGATCCACTGAATGGATTGTATACTGGTACTTTTGGTCCTTACACTTCAGAAGTAATTCAGCTAAGGCGTAGGTTTGGTCAATGGCATGATGATAATGAAGCAACTCCAAGTAAGGAGTTGAAGCTGGAATTTTTTGAGTATGTGGAAGCTGTGA
CACTAACTGGTGACCTGATTGTACCTGCAGGGCAGGTTACTTTCCGTGCAAAAATTGGCAAAGAGAACCAGCTGCCTCATCAAGACATCTTTCCAGAGCATCTTGGAGTGGTTGCATGGTATAGAGGTCAAGAGAGACGGGCACATGCTGGCTTCTGGACTGACGCGGAGCTACTGCTGATCAATAGGAAGGGTATTGGT
GGTCCACATCTTGCGTTTATGTTGTCTGCTCCCGATCGCCCCATTCTTGTATTATTCAATCGATTAAGACTTCCACAATGAGATTGAGAATACAGGAAATCCCATTGAAGACACAAGGAAATGAAAAGCTCATGTATTTCCAAGATACCTGGCCTGCAGATTCTCACATATGCCAAATCCATTTAAAGTTTTGTGGGGAA
ATTGTAGGTTCTTGCTTGCAGGCAAGGGAAATCACAAAAAGAAGAAAAAAGGGTTCTTAGGCTGGAAGGTAAATTTTGTAAACTAAATGCACATGGATCAACATGTGCTGTATGTGATATCATGTATTTTTTGGATAGATATAGCCTCTTATATGGGATGATAGCTATTGTTTTGTCATTCCATGCTCTTTATATTTATC
AGAGATTGCATGTTCGAAAAAATGCTGTTCTTACTACTGTAATATGACATTGAAATCAAAGGTCAAATGCACAATGTCGGTTTCCCCTTGCATTGCAGAAGATATTTGTAATAACAAGTGATTTGTAAGAATGACCACCAATCAACGAACTTAAGTTTGCAGAAACAGGAATATGGGACCAAGAACAGCCATGGGGGGTT
CCAGTGTGGTTTCATTGTCTTGAAATAGATTTTTCATTATGTAAAACAATTACAAACGTATCTAAGGCAATTTTGCATTTCGTGATAGAATATTTGCAAACATATTTTTATAGGAGTCAGCCCCAAGTGTTAGCTCAATTTGTAGATGCTCTTGTGCTAAGTCTACAGAGTCTCAAGG
>TRINITY_DN115481_c7_g1_i6 from sample A2 / Example unspliced isoform:AACTAATATTTGGATAGATATTGACAAAGGAATTTGTGGGAGATTAGCCAAAGGTTGAAAGCTGATATGGTCTCTCGTTCTCGTTCTCTCAGCGTCTATGTACTGAATCCAGTCGTCTCAGATAAGGCAACTAAATGCACGAGGGTTCCACTTCTTGCCCTCCGTACACTGAATTCTCTCAAGGATTCCAACCCAAAACC
CGGCGTTCGAGGGGTTTCCTTGGCCACCCATGGCCTCAATCGCCACAGTTTCGAATCCCAAGCACGTCGAATGCCATTTCCCACAGTTCATTCCGACGAGGCAATTCTGCACAGGGAGCCGCAGGGTCTCTGCAATTCCAAATTTCGCAATCTCACAGTGTAATTTATCATCGTCCCCGTGGGCTAATTGCTTGGTGCGA
AGTCTTCAGGTACCCAGGTCTTCGCCAGCTTCTTCGATGGTGAGTCGCTGCTCCAAGGAATCGCTGGCCGATCCAGAGGAATCCGGGAAATGGGTCAAGTGGGGTTTCGATTCGGGTCACAGGCAATTGCAGACGGTGGCAACCACGCTGGGCGATAGGTTGGTAGGCATGATGGAGAGAATTAAGGGTTATTTGGAAGA
TTACAAGGACAAAGACGAGGAGAAGAAATCTGAATGGGACTGGGAGAAGTGGCAGGACTATTTTGATATAGTCGAGAAAGATGAGAAATTGATATCCAGTTTGAAGCTCCGCCTAGAAGATGCTGTTGAAAGTGAGGATTTTGAGGAGGCTGCTAGGTTAAAATTGCTTATTGCAGAAAAAATGGCGTATGACACTGCTG
GTGAATTCATGAATCAGCTAACGAAAGCAATAGAGGAGGAACGCTATTGGGATGCAGCACATTTCTGGAAAGACACTGGTGCTGGATTGGTTGGATGGTGGGCCGGTTTGGCAGAAGGTGCAAATGATCCATATGGTAGAATCATCCATATTGGTTCTCAACATGGGAGATTTGTTGCCAAGAGTTATAATGCAAGGCAG
CTGGCTGCAGGAGCACCAGGCATTCCTTTGTTTGAAATCTTTGTAAAGAAAGACAGTGATCAGAAATACAAGGAGCAGGTAGTCTACTTGCAGCGGAACGGACAATCTGCAGATGCTTCCTTTTCAGTATCACATAAAGCTACTGAAGAATCAGAAACTGACTCAGAGAAAAATGATGACGCAGATGTGGGAGATGAGGG
ATTGAGGCGAGTTCTTAAATTTCTTAAAGCTGGGATGCCTGGCCTAAAATTCAAGGTCTTGAAAGTTGTGACTCCAGAGCGGGCAAACACAGACATAATCTCAGGGGTTTTTGAGCAGTTAATCCAGGATGTCAATAAAGAGAAGGATGAGGAAACTACTAGTGAAGGATCTACCAGCGAAGATAAAACTGGAGGTGATC
TACACAATGATAGAGTAACTGTCGGAGGCAATAGCGATTTTATGCAGCTTATTGAAATTGCTGCTGCAAAAGTTGCCATTGGCACTCTTTTACAGAGTATTGCAGAAGATGCACCTCCGAGCCTTCCTGTACGTGTGCCAGCCAAAATAGAGAAAAGAGGTCGTGATTCCTTTTGTTTTCACATTAAGGATGATGGCTCT
CAAAAATCAGTGAGAGGAAAGCAAATGACACCTGCCTGGAAAGTTGCAACAATTGCAAAACAGACATTAACCGATCCCATGTCTCCTGATGTTCCAAAGGCCCCCTGGTTCATGAAAAGGGTTTCTGTAAAGGCATTAGATGATTTTGGAGAAATAATTACACTTGCAGTTAGTGAGGCGCAGAAAAGACGTGGCCTAGC
TGGGAGCACAGTATTTCATCGCATCAACATAGAAGCAGCAACTTCTGATCCACTGAATGGATTGTATACTGGTACTTTTGGTCCTTACACTTCAGAAGTAATTCAGCTAAGGCGTAGGTTTGGTCAATGGCATGATGATAATGAAGCAACTCCAAGTAAGGAGTTGAAGCTGGAATTTTTTGAGTATGTGGAAGCTGTGA
CACTAACTGGTGACCTGATTGTACCTGCAGGGCAGGTTACTTTCCGTGCAAAAATTGGCAAAGAGAACCAGCTGCCTCATCAAGACATCTTTCCAGAGCATCTTGGAGTGGTTGCATGGTATAGAGGTCAAGAGAGACGGGCACATGCTGGCTTCTGGACTGACGCGGAGCTACTGCTGATCAATAGGAAGGGTATTGGT
GGTCCACATCTTGCGTTTATGTTGTCTGCTCCCGATCGCCCCATTCTTGTATTATTCAATCGATTAAGACTTCCACAATGAGATTGAGAATgtatgtacatgattcaatcttttaaataaacatttttacacaactcctttttgaactaatcatgtcttttgcagactttttctagtttatattaaatttagcttctgaa
tacgaatgtgaatctcagtcttacactcttgtcatatgaccagACAGGAAATCCCATTGAAGACACAAGGAAATGAAAAGCTCATGTATTTCCAAGATACCTGGCCTGCAGATTCTCACATATGCCAAATCCATTTAAAGTTTTGTGGGGAAATTGTAGGTTCTTGCTTGCAGGCAAGGGAAATCACAAAAAGAAGAAAA
AAGGGTTCTTAGGCTGGAAGGTAAATTTTGTAAACTAAATGCACATGGATCAACATGTGCTGTATGTGATATCATGTATTTTTTGGATAGATATAGCCTCTTATATGGGATGATAGCTATTGTTTTGTCATTCCATGCTCTTTATATTTATCAGAGATTGCATGTTCGAAAAAATGCTGTTCTTACTACTGTAATATGAC
ATTGAAATCAAAGGTCAAATGCACAATGTCGGTTTCCCCTTGCATTGCAGAAGATATTTGTAATAACAAGTGATTTGTAAGAATGACCACCAATCAACGAACTTAAGTTTGCAGAAACAGGAATATGGGACCAAGAACAGCCATGGGGGGTTCCAGTGTGGTTTCATTGTCTTGAAATAGATTTTTCATTATGTAAAACA
ATTACAAACGTATCTAAGGCAATTTTGCATTTCGTGATAGAATATTTGCAAACATATTTTTATAGGAGTCAGCCCCAAGTGTTAGCTCAATTTGTAGATGCTCTTGTGCTAAGTCTACAGAGTCTCAAGG
Intron 5 GTGTAGTGCT ... TTTAGCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.79 | 61 | 17 | 9.3 |
| A2 | 32.53 | 56 | 27 | 6.7 |
| A3 | 23.26 | 66 | 20 | 11 |
| A4 | 27.78 | 39 | 15 | 7.7 |
| A5 | 21.62 | 29 | 8 | 4.3 |
| A6 | 21.69 | 130 | 36 | 10.7 |
| A7 | 22.68 | 208 | 61 | 14.3 |
| A8 | 18.94 | 261 | 61 | 26.3 |
| A9 | 24.71 | 192 | 63 | 17.7 |
| A10 | 23.28 | 145 | 44 | 8.3 |
>TRINITY_DN115578_c0_g1_i2 from sample A1 / Example spliced isoformATTTGACATCTCTTTTAGCTTCAAGTGCAATATTCAACCTTTCATGTGCTTGTAAATTATGAGTCTGTTCGTAGGAATATTTTGACAAGCTGTTTTGTCAACTTATTCTTCATCAAACTCTTAAATATGATTTACTACACATACTTTTTAAGGGTAACTTCGACTGTGCTCTTCATCCAAGTACTTAAGGTCCTTTTATC
ATGCTGGGAATGCCCTCACAACATCCTTCTATTCTAACTGTTTGCCAATTTATTGATACAACAATCTAATGTGCTGTGGGGCTTTATTGATGAATATGCTATGTGATCAACAGCTCCGCCTAGAAGATGCTGTTGAAAGTGAGGATTTTGAGGAGGCTGCTAGGTTAAAATTGCTTATTGCAGAAAAAATGGCGTATGAC
ACTGCTGGTGAATTCATGAATCAGCTAACGAAAGCAATAGAGGAGGAACGCTATTGGGATGCAGCACATTTCTGGAAAGACACTGGTGCTGGATTGGTTGGATGGTGGGCCGGTTTGGCAGAAGGTGCAAATGATCCATATGGTAGAATCATCCATATTGGTTCTCAACATGGGAGATTTGTTGCCAAGAGTTATAATGC
AAGGCAGCTGGCTGCAGGAGCACCAGGCATTCCTTTGTTTGAAATCTTTGTAAAGAAAGACAGTGATCAGAAATACAAGGAGCAGGTAGTCTACTTGCAGCGGAACGGACAATCTGCAGATGCTTCCTTTTCAGTATCACATAAAGCTACTGAAGAATCAGAAACTGACTCAGAGAAAAATGATGATGCAGATGTGGGAG
ATGAGGGATTGAGGCGAGTTCTTAAATTTCTTAAAGCTGGGATGCCAGGCCTAAAATTCAAGGTCTTGAAAGTTGTGACTCCAGAGCGGGCAAACACAGACATAATCTCAGGGGTTTTTGAGCAGTTAATCCAGGATGTCAATAAAGAGAAGGATGAGGAAACTACTAGTGAAGGATCTACCAGCGAAGATAAAACTGGA
GGTGATCTACACAATGATAGAGTAACTGTCGGAGGCAATAGCGATTTTATGCAGCTTATTGAAATTGCTGCTGCAAAAGTTGCCATTGGCACTCTTTTACAGAGTATTGCAGAAGATGCACCTCCGAGCCTTCCTGTACGTGTGCCAGCCAAAATAGAGAAAAGAGGTCGTGATTCCTTTTGTTTTCACATTAAGGATGA
TGGCTCTCAAAAATCAGTGAGAGGAAAGCAAATGACACCTGCCTGGAAAGTTGCAACAATTGCAAAACAGACATTAACCGATCCCATGTCTCCTGATGTTCCAAAGGCCCCCTGGTTCATGAAAAGGGTTTCTGTAAAGGCATTAGATGATTTTGGAGAAATAATTACACTTGCAGTTAGTGAGGCGCAGAAAAGACGTG
GCCTAGCTGGGAGCACAGTATTTCATCGCATCAACATAGAAGCAGCAACTTCTGATCCACTGAATGGATTGTATACTGGTACTTTTGGTCCTTACACTTCAGAAGTAATTCAGCTAAGGCGTAGGTTTGGTCAATGGCATGATGATAATGAAGCAACTCCAAGTAAGGAGTTGAAGCTGGAATTTTTTGAGTATGTGGAA
GCTGTGACACTAACTGGTGACCTGATTGTACCTGCAGGGCAGGTTACTTTCCGTGCAAAAATTGGCAAAGAGAACCAGCTGCCTCATCAAGACATCTTTCCAGAGCATCTTGGAGTGGTTGCATGGTATAGAGGTCAAGAGAGACGGGCACATGCTGGCTTCTGGACTGACGCGGAGCTACTGCTGATCAATAGGAAGGG
TATTGGTGGTCCACATCTTGCGTTTATGTTGTCTGCTCCCGATCGCCCCATTCTTGTATTATTCAATCGATTAAGACTTCCACAATGAGATTGAGAATACAGGAAATCCCATTGAAGACACAAGGAAATGAAAAGCTCATGTATTTCCAAGATACCTGGCCTGCAGATTCTCACATATGCCAAATCCATTTAAAGTTTTG
TGGGGAAATTGTAGGTTCTTGCTTGCAGGCAAGGGAAATCACAAAAAGAAGAAAAAAGGGTTCTTAGGCTGGAAGGTAAATTTTGTAAACTAAATGCACATGGATCAACATGTGCTGTATGTGATATCATGTATTTTTTGGATAGATATAGCCTCTTATATGGGATGATAGCTATTGTTTTGTCATTCCATGCTCTTTAT
ATTTATCAGAGATTGCATGTTCGAAAAAATGCTGTTCTTACTACTGTAATATGACATTGAAATCAAAGGTCAAATGCACAATGTCGGTTTCCCCTTGCATTGCAGAAGATATTTGTAATAACAAGTGATTTGTAAGAATGACCACCAATCAACGAACTTAAGTTTGCAGAAACAGGAATATGGGACCAAGAACAGCCATG
GGGGGTTCCAGTGTGGTTTCATTGTCTTGAAATAGATTTTTCATTATGTAAAACAATTACAAACGTATCTAAGGCAATTTTGCATTTCGTGATAGAATATTTGCAAACATATTTTTATAGGAGTCAGCCCCAAGTGTTAGCTCAATTTGTAGATGCTCTTGTGCTAAGTCTACAGAGTCTCAAGGTCAAATCTCATTGGG
TCCTTTGGGTCTACGAGCAGCCTATGCAGCTAATGGTCCATCCGCCTTCAATCCAGAAATTTCAGAGAATGGGGAGAGCTCAGCAAAGGCCAACCTGGTACCGGCCTCCCCATTCTTTGCTTAAATGTGTGAACGTGGG
>TRINITY_DN115578_c0_g1_i4 from sample A1 / Example unspliced isoform:GCCAAAGGTTGAAAGCTGATATGGTCTCTCGTTCTCGTTCTCTCAGCGTCTATGTACTGAATCCAGTCGTCTCAGATAAGGCATCTAAATGCACGAGGGTTCCACTTCTTGCCCTCCGTACACTGAATTCTCTCAAGGATTCCAACCCAAAACCCGGCGTTCGAGGGGTTTCCTTGGCCACCCATGGCCTCAATCGCCAC
AGTTTCGAATCCCAAGCACGTCGAATGCCATTTCCCACAGTTCATTCCGACGAGGCAATTCTGCACAGGGAGCCGCAGGGTCTCTGCAATTCCAAATTTCGCAATCTCACAGTGTAATTTATCATCGTCCCCGTGGGCTAATTGCTTGGTGCGAAGTCTTCAGGTACCCAGGTCTTCGCCAGCTTCTTCGATGGTGAGTC
GCTGCTCCAAGGAATCGCTGGCCGATCCAGAGGAATCCGGGAAATGGGTCAAGTGGGGTTTCGATTCGGGTCACAGGCAATTGCAGACGGTGGCAACCACGCTGGGCGATAGGTTGGTAGGCATGATGGAGAGAATTAAGGGTTATTTGGAAGATTACAAGGACAAAGACGAGGAGAAGAAATCTGAATGGGACTGGGAG
AAGTGGCAGGACTATTTTGATATAGTCGAGAAAGATGAGAAATTGATATCCAGTTTGAAGCTCCGCCTAGAAGATGCTGTTGAAAGTGAGGATTTTGAGGAGGCTGCTAGGTTAAAATTGCTTATTGCAGAAAAAATGGCGTATGACACTGCTGGTGAATTCATGAATCAGCTAACGAAAGCAATAGAGGAGGAACGCTA
TTGGGATGCAGCACATTTCTGGAAAGACACTGGTGCTGGATTGGTTGGATGGTGGGCCGGTTTGGCAGAAGGTGCAAATGATCCATATGGTAGAATCATCCATATTGGTTCTCAACATGGGAGATTTGTTGCCAAGAGTTATAATGCAAGGCAGCTGGCTGCAGGAGCACCAGGCATTCCTTTGTTTGAAATCTTTGTAA
AGAAAGACAGTGATCAGAAATACAAGGAGCAGGTAGTCTACTTGCAGCGGAACGGACAATCTGCAGATGCTTCCTTTTCAGTATCACATAAAGCTACTGAAGAATCAGAAACTGACTCAGAGAAAAATGATGATGCAGATGTGGGAGATGAGGGATTGAGGCGAGTTCTTAAATTTCTTAAAGCTGGGATGCCAGGCCTA
AAATTCAAGGTCTTGAAAGTTGTGACTCCAGAGCGGGCAAACACAGACATAATCTCAGGGGTTTTTGAGCAGTTAATCCAGGATGTCAATAAAGAGAAGGATGAGGAAACTACTAGTGAAGGATCTACCAGCGAAGATAAAACTGGAGGTGATCTACACAATGATAGAGTAACTGTCGGAGGCAATAGCGATTTTATGCA
GCTTATTGAAATTGCTGCTGCAAAAGTTGCCATTGGCACTCTTTTACAGAGTATTGCAGAAGATGCACCTCCGAGCCTTCCTGTACGTGTGCCAGCCAAAATAGAGAAAAGAGGTCGTGATTCCTTTTGTTTTCACATTAAGGATGATGGCTCTCAAAAATCAGTGAGAGGAAAGCAAATGACACCTGCCTGGAAAGTTG
CAACAATTGCAAAACAGACATTAACCGATCCCATGTCTCCTGATGTTCCAAAGGCCCCCTGGTTCATGAAAAGGGTTTCTGTAAAGGCATTAGATGATTTTGGAGAAATAATTACACTTGCAGTTAGTGAGGCGCAGAAAAGACGTGGCCTAGCTGGGAGCACAGTATTTCATCGCATCAACATAGAAGCAGCAACTTCT
GATCCACTGAATGGATTGTATACTGGTACTTTTGGTCCTTACACTTCAGAAGTAATTCAGCTAAGGCGTAGGTTTGGTCAATGGCATGATGATAATGAAGCAACTCCAAGTAAGGAGTTGAAGCTGGAATTTTTTGAGTATGTGGAAGCTGTGACACTAACTGGTGACCTGATTGTACCTGCAGGGCAGgtgtagtgctt
tcaccaaatgctgtagcatggaaaattgtctttctgttttatcataattagtgttttgaattgtaatttagtcctataactgacattcattacagttatctaatactctcagatgtttagcacagGTTACTTTCCGTGCAAAAATTGGCAAAGAGAACCAGCTGCCTCATCAAGACATCTTTCCAGAGCATCTTGGAGTG
GTTGCATGGTATAGAGGTCAAGAGAGACGGGCACATGCTGGCTTCTGGACTGACGCGGAGCTACTGCTGATCAATAGGAAGGGTATTGGTGGTCCACATCTTGCGTTTATGTTGTCTGCTCCCGATCGCCCCATTCTTGTATTATTCAATCGATTAAGACTTCCACAATGAGATTGAGAATACAGGAAATCCCATTGAAG
ACACAAGGAAATGAAAAGCTCATGTATTTCCAAGATACCTGGCCTGCAGATTCTCACATATGCCAAATCCATTTAAAGTTTTGTGGGGAAATTGTAGGTTCTTGCTTGCAGGCAAGGGAAATCACAAAAAGAAGAAAAAAGGGTTCTTAGGCTGGAAGGTAAATTTTGTAAACTAAATGCACATGGATCAACATGTGCTG
TATGTGATATCATGTATTTTTTGGATAGATATAGCCTCTTATATGGGATGATAGCTATTGTTTTGTCATTCCATGCTCTTTATATTTATCAGAGATTGCATGTTCGAAAAAATGCTGTTCTTACTACTGTAATATGACATTGAAATCAAAGGTCAAATGCACAATGTCGGTTTCCCCTTGCATTGCAGAAGATATTTGTA
ATAACAAGTGATTTGTAAGAATGACCACCAATCAACGAACTTAAGTTTGCAGAAACAGGAATATGGGACCAAGAACAGCCATGGGGGGTTCCAGTGTGGTTTCATTGTCTTGAAATAGATTTTTCATTATGTAAAACAATTACAAACGTATCTAAGGCAATTTTGCATTTCGTGATAGAATATTTGCAAACATATTTTTA
TAGGAGTCAGCCCCAAGTGTTAGCTCAATTTGTAGATGCTCTTGTGCTAAGTCTACAGAGTCTCAAGGTCAAATCTCATTGGGTCCTTTGGGTCTACGAGCAGCCTATGCAGCTAATGGTCCATCCGCCTTCAATCCAGAAATTTCAGAGAATGGGGAGAGCTCAGCAAAGGCCAACCTGGTACCGGCCTCCCCATTCTT
TGCTTAAATGTGTGAACGTGGG