sp|Q9AWS7|Y1407_ORYSJ ----> Putative AP2/ERF and B3 domain-containing protein Os01g0140700
Intron 1 GTAAGCATTC ... GTACTATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 0 |
| A2 | 50 | 2 | 2 | 0 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 54.55 | 5 | 6 | 1 |
| A7 | 51.85 | 26 | 28 | 9 |
| A8 | 48.57 | 18 | 17 | 3 |
| A9 | 44.12 | 38 | 30 | 3 |
| A10 | 53.57 | 13 | 15 | 9 |
>TRINITY_DN42971_c1_g7_i3 from sample A7 / Example spliced isoformTAGGTCTAGCTCAAGCAATTAGGTCTAGCTCCTGGGGCTTGGAGACTGTCCGCCTGTTCATGAGAAGAAGGGAAAACTGAGTCCAGCCTTGCTGCCACTGGTGATAGGTAAACTGAAATGGGATCAAGGTAAGCCGCTCAATCAATGAACCCAATCATGTACCTGAACCAGAGGATGGCTCTATAATTTAGACTCAATCT
GTATGATCAGTCCTAGCTCAAGCCAGCGTTCGTCATCGTCACAAATTTTCTTGATTGAGGAGCTAAATCCCTGGGTTGGAGGAGCTGCATCAAATTTCATAGTGCTGCATCCATTATCAAAGCTACTCGTTCTGGAACTGCCTTGAGCCAGATCGGATTATTGGCCGCAGGGGCTACATTCAAAGCCAAACTGTGTTTGA
GCTATCTGGAAGCTTATTTTCATAGTTTCATTCATTTACACATTGAGAAGGTTATGGATATATTAGACAGACAAGCAGCCATTACCTTGACGTGGATTAAATGTAGGCGTGAGTGTTTTTCAAAAATTTTGACTCTGAGCGACGCAACAAGACATTCCAGCAGGTTGATTATTCCACTAGCTTCTGTGGAGCGCTGTATA
TTGCCATTCTGCAATGAAATGCAACAACAAGAAATTGCTGAAGGCGTGGGATGCACGCTTTATCTAATTGATGAGGATGGTGCGGATGGAGATATAATAATTCCGATGTTGTTCAAACGGTGGCCCAGCACTAAATCCTACGTCTTCACAACGGGTTGGCCCGACTACGTACAAACAAAAGGTTTGATGGAGAATGATGT
TGTCATCTTTTCCTGGGACTCCCATCGTTCTCTGTTTTTCATCTCCTGTGAGAAGTCAGTAAACAAAGAAGCCGTGTCCGGCCAAAACTAAACAATGGAACTGCAACCTCTCCCCGATCCGATCCGATCCGGTCACTCAATGTTTTCAAAATCTATCACCCAGTTGAACTTTGATATATATTCTTTTGTGTAGAAGTTAT
AAAAGAATCGCAAGCTTTAGTGTTTCTTCCTGTTCGTTTTGTTACATGAATATTTTGAATGTCAACCC
>TRINITY_DN42971_c1_g7_i4 from sample A7 / Example unspliced isoform:TAGGTCTAGCTCAAGCAATTAGGTCTAGCTCCTGGGGCTTGGAGACTGTCCGCCTGTTCATGAGAAGAAGGGAAAACTGAGTCCAGCCTTGCTGCCACTGGTGATAGGTAAACTGAAATGGGATCAAGGTAAGCCGCTCAATCAATGAACCCAATCATGTACCTGAACCAGAGGATGGCTCTATAATTTAGACTCAATCT
GTATGATCAGgtaagcattcatgcaaatatatactcaatctgtactatcagTCCTAGCTCAAGCCAGCGTTCGTCATCGTCACAAATTTTCTTGATTGAGGAGCTAAATCCCTGGG
Intron 2 GTAAGCATTC ... CTGAACCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 0 |
| A2 | 35.24 | 2 | 2 | 0.2 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 41.18 | 5 | 7 | 0 |
| A7 | 45.26 | 26 | 26 | 17 |
| A8 | 44.08 | 18 | 18 | 10.4 |
| A9 | 32.97 | 38 | 30 | 7.4 |
| A10 | 54.06 | 13 | 21 | 9.6 |
>TRINITY_DN42971_c1_g7_i3 from sample A7 / Example spliced isoformTAGGTCTAGCTCAAGCAATTAGGTCTAGCTCCTGGGGCTTGGAGACTGTCCGCCTGTTCATGAGAAGAAGGGAAAACTGAGTCCAGCCTTGCTGCCACTGGTGATAGGTAAACTGAAATGGGATCAAGGTAAGCCGCTCAATCAATGAACCCAATCATGTACCTGAACCAGAGGATGGCTCTATAATTTAGACTCAATCT
GTATGATCAGTCCTAGCTCAAGCCAGCGTTCGTCATCGTCACAAATTTTCTTGATTGAGGAGCTAAATCCCTGGGTTGGAGGAGCTGCATCAAATTTCATAGTGCTGCATCCATTATCAAAGCTACTCGTTCTGGAACTGCCTTGAGCCAGATCGGATTATTGGCCGCAGGGGCTACATTCAAAGCCAAACTGTGTTTGA
GCTATCTGGAAGCTTATTTTCATAGTTTCATTCATTTACACATTGAGAAGGTTATGGATATATTAGACAGACAAGCAGCCATTACCTTGACGTGGATTAAATGTAGGCGTGAGTGTTTTTCAAAAATTTTGACTCTGAGCGACGCAACAAGACATTCCAGCAGGTTGATTATTCCACTAGCTTCTGTGGAGCGCTGTATA
TTGCCATTCTGCAATGAAATGCAACAACAAGAAATTGCTGAAGGCGTGGGATGCACGCTTTATCTAATTGATGAGGATGGTGCGGATGGAGATATAATAATTCCGATGTTGTTCAAACGGTGGCCCAGCACTAAATCCTACGTCTTCACAACGGGTTGGCCCGACTACGTACAAACAAAAGGTTTGATGGAGAATGATGT
TGTCATCTTTTCCTGGGACTCCCATCGTTCTCTGTTTTTCATCTCCTGTGAGAAGTCAGTAAACAAAGAAGCCGTGTCCGGCCAAAACTAAACAATGGAACTGCAACCTCTCCCCGATCCGATCCGATCCGGTCACTCAATGTTTTCAAAATCTATCACCCAGTTGAACTTTGATATATATTCTTTTGTGTAGAAGTTAT
AAAAGAATCGCAAGCTTTAGTGTTTCTTCCTGTTCGTTTTGTTACATGAATATTTTGAATGTCAACCC
>TRINITY_DN42971_c1_g7_i2 from sample A7 / Example unspliced isoform:TAGGTCTAGCTCAAGCAATTAGGTCTAGCTCCTGGGGCTTGGAGACTGTCCGCCTGTTCATGAGAAGAAGGGAAAACTGAGTCCAGCCTTGCTGCCACTGGTGATAGGTAAACTGAAATGGGATCAAGGTAAGCCGCTCAATCAATGAACCCAATCATGTACCTGAACCAGAGGATGGCTCTATAATTTAGACTCAATCT
GTATGATCAGgtaagcattcatgcaaatatatactcaatctgtactatcaggtaagcatttcaaacatttcatgatagctgcatgtacttgtttgcatgcagcatttgttcaagtcattttagcatttgttcaagttattttataaaatgaagggttaaacatggtagtcagcttcgttgcacggccggcgctatacatt
tcttattaaatctatatattctgttgcttggcctgaaccaagTCCTAGCTCAAGCCAGCGTTCGTCATCGTCACAAATTTTCTTGATTGAGGAGCTAAATCCCTGGGGTATGTAGACTGCTTGCCCGTTCTCAATATTTCATTTAACATTCGAATCTGAAAAAGTTCCTTGGAATTTCTCTGTGGCTGGATATGAATTAA
TCAAAGATAAAGATCAAGATAATCAAAGATAAAGATTATCAATATTTCATTTAACATTGGAATCTGAAAGATAACATTCTCTGTGACGTCCATTGTAGTTGGAGGAGCTGCATCAAATTTCATAGTGCTGCATCCATTATCAAAGCTACTCGTTCTGGAACTGCCTTGAGCCAGATCGGATTATTGGCCGCAGGGGCTAC
ATTCAAAGCCAAACTGTGTTTGAGCTATCTGGAAGCTTATTTTCATAGTTTCATTCATTTACACATTGAGAAGGTTATGGATATATTAGACAGACAAGCAGCCATTACCTTGACGTGGATTAAATGTAGGCGTGAGTGTTTTTCAAAAATTTTGACTCTGAGCGACGCAACAAGACATTCCAGCAGGTTGATTATTCCAC
TAGCTTCTGTGGAGCGCTGTATATTGCCATTCTGCAATGAAATGCAACAACAAGAAATTGCTGAAGGCGTGGGATGCACGCTTTATCTAATTGATGAGGATGGTGCGGATGGAGATATAATAATTCCGATGTTGTTCAAACGGTGGCCCAGCACTAAATCCTACGTCTTCACAACGGGTTGGCCCGACTACGTACAAACA
AAAGGTTTGATGGAGAATGATGTTGTCATCTTTTCCTGGGACTCCCATCGTTCTCTGTTTTTCATCTCCTGTGAGAAGTCAGTAAACAAAGAAGCCGTGTCCGGCCAAAACTAAACAATGGAACTGCAACCTCTCCCCGATCCGATCCGATCCGGTCACTCAATGTTTTCAAAATCTATCACCCAGTTGAACTTTGATAT
ATATTCTTTTGTGTAGAAGTTATAAAAGAATCGCAAGCTTTAGTGTTTCTTCCTGTTCGTTTTGTTACATGAATATTTTGAATGTCAACCC
Intron 3 GTAAGCATTT ... CTGAACCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 0 |
| A2 | -1 | 0 | 0 | 0.5 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | 100 | 0 | 1 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 50 | 1 | 2 | 0 |
| A7 | 59.09 | 9 | 9 | 17 |
| A8 | 76.39 | 3 | 10 | 9.5 |
| A9 | 69.05 | 3 | 7 | 6.5 |
| A10 | 60.85 | 9 | 19 | 9 |
>TRINITY_DN42971_c1_g7_i4 from sample A7 / Example spliced isoformTAGGTCTAGCTCAAGCAATTAGGTCTAGCTCCTGGGGCTTGGAGACTGTCCGCCTGTTCATGAGAAGAAGGGAAAACTGAGTCCAGCCTTGCTGCCACTGGTGATAGGTAAACTGAAATGGGATCAAGGTAAGCCGCTCAATCAATGAACCCAATCATGTACCTGAACCAGAGGATGGCTCTATAATTTAGACTCAATCT
GTATGATCAGGTAAGCATTCATGCAAATATATACTCAATCTGTACTATCAGTCCTAGCTCAAGCCAGCGTTCGTCATCGTCACAAATTTTCTTGATTGAGGAGCTAAATCCCTGGG
>TRINITY_DN42971_c1_g7_i2 from sample A7 / Example unspliced isoform:TAGGTCTAGCTCAAGCAATTAGGTCTAGCTCCTGGGGCTTGGAGACTGTCCGCCTGTTCATGAGAAGAAGGGAAAACTGAGTCCAGCCTTGCTGCCACTGGTGATAGGTAAACTGAAATGGGATCAAGGTAAGCCGCTCAATCAATGAACCCAATCATGTACCTGAACCAGAGGATGGCTCTATAATTTAGACTCAATCT
GTATGATCAGGTAAGCATTCATGCAAATATATACTCAATCTGTACTATCAGgtaagcatttcaaacatttcatgatagctgcatgtacttgtttgcatgcagcatttgttcaagtcattttagcatttgttcaagttattttataaaatgaagggttaaacatggtagtcagcttcgttgcacggccggcgctatacatt
tcttattaaatctatatattctgttgcttggcctgaaccaagTCCTAGCTCAAGCCAGCGTTCGTCATCGTCACAAATTTTCTTGATTGAGGAGCTAAATCCCTGGGGTATGTAGACTGCTTGCCCGTTCTCAATATTTCATTTAACATTCGAATCTGAAAAAGTTCCTTGGAATTTCTCTGTGGCTGGATATGAATTAA
TCAAAGATAAAGATCAAGATAATCAAAGATAAAGATTATCAATATTTCATTTAACATTGGAATCTGAAAGATAACATTCTCTGTGACGTCCATTGTAGTTGGAGGAGCTGCATCAAATTTCATAGTGCTGCATCCATTATCAAAGCTACTCGTTCTGGAACTGCCTTGAGCCAGATCGGATTATTGGCCGCAGGGGCTAC
ATTCAAAGCCAAACTGTGTTTGAGCTATCTGGAAGCTTATTTTCATAGTTTCATTCATTTACACATTGAGAAGGTTATGGATATATTAGACAGACAAGCAGCCATTACCTTGACGTGGATTAAATGTAGGCGTGAGTGTTTTTCAAAAATTTTGACTCTGAGCGACGCAACAAGACATTCCAGCAGGTTGATTATTCCAC
TAGCTTCTGTGGAGCGCTGTATATTGCCATTCTGCAATGAAATGCAACAACAAGAAATTGCTGAAGGCGTGGGATGCACGCTTTATCTAATTGATGAGGATGGTGCGGATGGAGATATAATAATTCCGATGTTGTTCAAACGGTGGCCCAGCACTAAATCCTACGTCTTCACAACGGGTTGGCCCGACTACGTACAAACA
AAAGGTTTGATGGAGAATGATGTTGTCATCTTTTCCTGGGACTCCCATCGTTCTCTGTTTTTCATCTCCTGTGAGAAGTCAGTAAACAAAGAAGCCGTGTCCGGCCAAAACTAAACAATGGAACTGCAACCTCTCCCCGATCCGATCCGATCCGGTCACTCAATGTTTTCAAAATCTATCACCCAGTTGAACTTTGATAT
ATATTCTTTTGTGTAGAAGTTATAAAAGAATCGCAAGCTTTAGTGTTTCTTCCTGTTCGTTTTGTTACATGAATATTTTGAATGTCAACCC
Intron 4 GTATGTAGAC ... TCCATTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 0 |
| A2 | -1 | 0 | 0.5 | 0 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 34.16 | 13.5 | 4 | 7 |
| A8 | 21.11 | 7.5 | 2 | 2 |
| A9 | 37.5 | 8.5 | 0.5 | 5 |
| A10 | 53.04 | 13.5 | 3.5 | 15 |
>TRINITY_DN42971_c1_g7_i3 from sample A7 / Example spliced isoformTAGGTCTAGCTCAAGCAATTAGGTCTAGCTCCTGGGGCTTGGAGACTGTCCGCCTGTTCATGAGAAGAAGGGAAAACTGAGTCCAGCCTTGCTGCCACTGGTGATAGGTAAACTGAAATGGGATCAAGGTAAGCCGCTCAATCAATGAACCCAATCATGTACCTGAACCAGAGGATGGCTCTATAATTTAGACTCAATCT
GTATGATCAGTCCTAGCTCAAGCCAGCGTTCGTCATCGTCACAAATTTTCTTGATTGAGGAGCTAAATCCCTGGGTTGGAGGAGCTGCATCAAATTTCATAGTGCTGCATCCATTATCAAAGCTACTCGTTCTGGAACTGCCTTGAGCCAGATCGGATTATTGGCCGCAGGGGCTACATTCAAAGCCAAACTGTGTTTGA
GCTATCTGGAAGCTTATTTTCATAGTTTCATTCATTTACACATTGAGAAGGTTATGGATATATTAGACAGACAAGCAGCCATTACCTTGACGTGGATTAAATGTAGGCGTGAGTGTTTTTCAAAAATTTTGACTCTGAGCGACGCAACAAGACATTCCAGCAGGTTGATTATTCCACTAGCTTCTGTGGAGCGCTGTATA
TTGCCATTCTGCAATGAAATGCAACAACAAGAAATTGCTGAAGGCGTGGGATGCACGCTTTATCTAATTGATGAGGATGGTGCGGATGGAGATATAATAATTCCGATGTTGTTCAAACGGTGGCCCAGCACTAAATCCTACGTCTTCACAACGGGTTGGCCCGACTACGTACAAACAAAAGGTTTGATGGAGAATGATGT
TGTCATCTTTTCCTGGGACTCCCATCGTTCTCTGTTTTTCATCTCCTGTGAGAAGTCAGTAAACAAAGAAGCCGTGTCCGGCCAAAACTAAACAATGGAACTGCAACCTCTCCCCGATCCGATCCGATCCGGTCACTCAATGTTTTCAAAATCTATCACCCAGTTGAACTTTGATATATATTCTTTTGTGTAGAAGTTAT
AAAAGAATCGCAAGCTTTAGTGTTTCTTCCTGTTCGTTTTGTTACATGAATATTTTGAATGTCAACCC
>TRINITY_DN42971_c1_g7_i2 from sample A7 / Example unspliced isoform:TAGGTCTAGCTCAAGCAATTAGGTCTAGCTCCTGGGGCTTGGAGACTGTCCGCCTGTTCATGAGAAGAAGGGAAAACTGAGTCCAGCCTTGCTGCCACTGGTGATAGGTAAACTGAAATGGGATCAAGGTAAGCCGCTCAATCAATGAACCCAATCATGTACCTGAACCAGAGGATGGCTCTATAATTTAGACTCAATCT
GTATGATCAGGTAAGCATTCATGCAAATATATACTCAATCTGTACTATCAGGTAAGCATTTCAAACATTTCATGATAGCTGCATGTACTTGTTTGCATGCAGCATTTGTTCAAGTCATTTTAGCATTTGTTCAAGTTATTTTATAAAATGAAGGGTTAAACATGGTAGTCAGCTTCGTTGCACGGCCGGCGCTATACATT
TCTTATTAAATCTATATATTCTGTTGCTTGGCCTGAACCAAGTCCTAGCTCAAGCCAGCGTTCGTCATCGTCACAAATTTTCTTGATTGAGGAGCTAAATCCCTGGGgtatgtagactgcttgcccgttctcaatatttcatttaacattcgaatctgaaaaagttccttggaatttctctgtggctggatatgaattaa
tcaaagataaagatcaagataatcaaagataaagattatcaatatttcatttaacattggaatctgaaagataacattctctgtgacgtccattgtagTTGGAGGAGCTGCATCAAATTTCATAGTGCTGCATCCATTATCAAAGCTACTCGTTCTGGAACTGCCTTGAGCCAGATCGGATTATTGGCCGCAGGGGCTAC
ATTCAAAGCCAAACTGTGTTTGAGCTATCTGGAAGCTTATTTTCATAGTTTCATTCATTTACACATTGAGAAGGTTATGGATATATTAGACAGACAAGCAGCCATTACCTTGACGTGGATTAAATGTAGGCGTGAGTGTTTTTCAAAAATTTTGACTCTGAGCGACGCAACAAGACATTCCAGCAGGTTGATTATTCCAC
TAGCTTCTGTGGAGCGCTGTATATTGCCATTCTGCAATGAAATGCAACAACAAGAAATTGCTGAAGGCGTGGGATGCACGCTTTATCTAATTGATGAGGATGGTGCGGATGGAGATATAATAATTCCGATGTTGTTCAAACGGTGGCCCAGCACTAAATCCTACGTCTTCACAACGGGTTGGCCCGACTACGTACAAACA
AAAGGTTTGATGGAGAATGATGTTGTCATCTTTTCCTGGGACTCCCATCGTTCTCTGTTTTTCATCTCCTGTGAGAAGTCAGTAAACAAAGAAGCCGTGTCCGGCCAAAACTAAACAATGGAACTGCAACCTCTCCCCGATCCGATCCGATCCGGTCACTCAATGTTTTCAAAATCTATCACCCAGTTGAACTTTGATAT
ATATTCTTTTGTGTAGAAGTTATAAAAGAATCGCAAGCTTTAGTGTTTCTTCCTGTTCGTTTTGTTACATGAATATTTTGAATGTCAACCC