sp|Q9XGJ4|GGM13_GNEGN ----> MADS-box protein GGM13

Intron 1 GTATCCATCG ... GAATTCTGAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	100	0	10	6
A2	77.78	1	6	1
A3	100	0	2	0
A4	100	0	6	3
A5	100	0	7	1
A6	100	0	53	16
A7	100	0	68	31
A8	96.95	2	87	40
A9	93.78	6	124	57
A10	100	0	54	20

>TRINITY_DN44005_c0_g1_i8 from sample A6 / Example spliced isoform

CTTATAGTAGCACTATATCAATGTTATCCATCGAACATATATAATTCTGAGAGATCAAATTTGTTTGTGTTTACCTCTGTTTTATGGTGTAAAAAATTAGAGAAAGCATCTACAAAAGAAAAATTTGTAGGTTATGAATTTTTATAATACATTTTGATTTAAATATAATCTTGAAGTTACAAGCTGTTCTTATGAATTAA
TCTCATAAATCTAACCTAAATAAGACTGAGTGAGATTTTATAAATTGTGAAAATTTGTTTTGAAAACTATTTTAAAAGGTAAGAAATGATTTGTATATTCTATATATAGTTCCATAAAGAGACCTGTCCTTTCTTTCCCAGGTTATCAAGTTTTTATTACTTCTTGGCGTCTTCTGGACCAGATTCTTCATCAATTCTGT
CTCGCGATTCTCAATCAATCTTGAAAGACAGATATTATATATGTTAGGCCTTATATAGGTCTGTTGTTGATTATTTTTTGCAGTAGGTCTGATAAAGAAGGCCAGAGAATTGTCCATCCTCTGCGATGCAGAAATAGCAGTCTTCATCTTTTCAAGCAATGGAAAGCTCTTCGAATTCGCCAGTTCAGAGACGAAAAGCA
TACTGGATCGTTACAGCAAATGCTCTGAACAAACATCACTCGGGTGAGGGCGAGAAAAAACCGATCCATAATGAATCGCATAGAGCAGATAACGAAAAATGAGCGGAATCTAATAGAGGAGAATAAGGGTTTGCGGCGAGAGGTGCAGGACATTGCGGATAATGAATTTCTAAGAGCTATTCCTTAGACTTAATTGGATG
GGAAGAGCGAAAATAGAGATCAAAAGGATAGAATGTCGAGGATACAGGCAAGTCACCTTCTCCAAGCGAAGAGTAGGTCTGATAAAGAAGGCCAGAGAATTGTCCATCCTTTGCGATGCAGAAATAGCAGTCCTCATCTTTTCAAGCAATGGAAAGCTCTACGAATTCGCCAGTTCAGAGACGAAAAGCATACTGGATCG
TTACAGCAAATGCTCTGAACAAAAATCACGATCAGAATCACGTGCCCTAGCCGAATGCAGCGATAGTAATCATAATAGAAACCAGAGCACCGAGGCCACGATGCTCAAGCTTCAAGTAGAGCAGCTGCAGGTGATGCTCAAGAATACGATGGGAGAAGATCTTGAAGGATTGGATCTTGATCAATTACAACAACTAGAGG
AGAAATTGGAGCTGGGAATCAGTCGGGTGAGGGCGAGAAAAAACCGATCCATAATGAATCGCATAGAGCAGATAACGAAAAATGAGCGGAATCTAATAGAGGAGAATAAGCGTTTGCGGCGAGAGGTGCAGGACATTGCGGATAATGAATTTCAAAGAGCTATTCCTTAGACTTAAATGTAATTGATTTTTAATGGATTA
TAATGGATATTAATTGGATCCCTGACAATGCTCAGATTTATATGATGCTGTTGTAATTGCCCTGAATTTTGCCCAAATTATTGTAGTACAAGTTCGAATAATTGTTTTGACGCACATTCACACCTGATTCTTCTTTCTCGCTTGTGGTTTGCTTATAGTAGCACTATATCAATGGTATCCATCGAACATTTAGAATTCTG
AGTTATCCATCGAACATATATAATTCTGAGAGATCAAATTTGTTTGTGTTTACCTCTGTTTTATGGTGTAAAAAATTAGAGAAAGCATCTACAAAAGAAAAATTTGTAGGTTATGAATTTTTATAATACATTTTGATTTAAATATAATCTTGAAGTTACAAGCTGTTCTTATGAATTAATCTCATAAATCTAACCTAAAT
AAGACTGAGTGAGATTTTATAAATTGTGAAAATTTGTTTTGAAAACTATTTTAAAAGGTAAGAAATGATTTGTATATTCTATATATAGTTCCATAAAGAGACCTGTCCTTTCTTTCCCAGGTTATCAAGTTTTTATTACTTCTTGGCGTCTTCTGGACCAGATTCTTCATCAATTCTGTCTCGCGATTCTCAATCAATCT
TGAAAGACAGATATTATATATGTTAGGCCTTATATAGGTCTGTTGTTGATTATTTTTTGCAGGGATGGGAA

>TRINITY_DN44005_c0_g1_i8 from sample A6 / Example unspliced isoform:

CTTATAGTAGCACTATATCAATGTTATCCATCGAACATATATAATTCTGAGAGATCAAATTTGTTTGTGTTTACCTCTGTTTTATGGTGTAAAAAATTAGAGAAAGCATCTACAAAAGAAAAATTTGTAGGTTATGAATTTTTATAATACATTTTGATTTAAATATAATCTTGAAGTTACAAGCTGTTCTTATGAATTAA
TCTCATAAATCTAACCTAAATAAGACTGAGTGAGATTTTATAAATTGTGAAAATTTGTTTTGAAAACTATTTTAAAAGGTAAGAAATGATTTGTATATTCTATATATAGTTCCATAAAGAGACCTGTCCTTTCTTTCCCAGGTTATCAAGTTTTTATTACTTCTTGGCGTCTTCTGGACCAGATTCTTCATCAATTCTGT
CTCGCGATTCTCAATCAATCTTGAAAGACAGATATTATATATGTTAGGCCTTATATAGGTCTGTTGTTGATTATTTTTTGCAGTAGGTCTGATAAAGAAGGCCAGAGAATTGTCCATCCTCTGCGATGCAGAAATAGCAGTCTTCATCTTTTCAAGCAATGGAAAGCTCTTCGAATTCGCCAGTTCAGAGACGAAAAGCA
TACTGGATCGTTACAGCAAATGCTCTGAACAAACATCACTCGGGTGAGGGCGAGAAAAAACCGATCCATAATGAATCGCATAGAGCAGATAACGAAAAATGAGCGGAATCTAATAGAGGAGAATAAGGGTTTGCGGCGAGAGGTGCAGGACATTGCGGATAATGAATTTCTAAGAGCTATTCCTTAGACTTAATTGGATG
GGAAGAGCGAAAATAGAGATCAAAAGGATAGAATGTCGAGGATACAGGCAAGTCACCTTCTCCAAGCGAAGAGTAGGTCTGATAAAGAAGGCCAGAGAATTGTCCATCCTTTGCGATGCAGAAATAGCAGTCCTCATCTTTTCAAGCAATGGAAAGCTCTACGAATTCGCCAGTTCAGAGACGAAAAGCATACTGGATCG
TTACAGCAAATGCTCTGAACAAAAATCACGATCAGAATCACGTGCCCTAGCCGAATGCAGCGATAGTAATCATAATAGAAACCAGAGCACCGAGGCCACGATGCTCAAGCTTCAAGTAGAGCAGCTGCAGGTGATGCTCAAGAATACGATGGGAGAAGATCTTGAAGGATTGGATCTTGATCAATTACAACAACTAGAGG
AGAAATTGGAGCTGGGAATCAGTCGGGTGAGGGCGAGAAAAAACCGATCCATAATGAATCGCATAGAGCAGATAACGAAAAATGAGCGGAATCTAATAGAGGAGAATAAGCGTTTGCGGCGAGAGGTGCAGGACATTGCGGATAATGAATTTCAAAGAGCTATTCCTTAGACTTAAATGTAATTGATTTTTAATGGATTA
TAATGGATATTAATTGGATCCCTGACAATGCTCAGATTTATATGATGCTGTTGTAATTGCCCTGAATTTTGCCCAAATTATTGTAGTACAAGTTCGAATAATTGTTTTGACGCACATTCACACCTGATTCTTCTTTCTCGCTTGTGGTTTGCTTATAGTAGCACTATATCAATGgtatccatcgaacatttagaattctg
agTTATCCATCGAACATATATAATTCTGAGAGATCAAATTTGTTTGTGTTTACCTCTGTTTTATGGTGTAAAAAATTAGAGAAAGCATCTACAAAAGAAAAATTTGTAGGTTATGAATTTTTATAATACATTTTGATTTAAATATAATCTTGAAGTTACAAGCTGTTCTTATGAATTAATCTCATAAATCTAACCTAAAT
AAGACTGAGTGAGATTTTATAAATTGTGAAAATTTGTTTTGAAAACTATTTTAAAAGGTAAGAAATGATTTGTATATTCTATATATAGTTCCATAAAGAGACCTGTCCTTTCTTTCCCAGGTTATCAAGTTTTTATTACTTCTTGGCGTCTTCTGGACCAGATTCTTCATCAATTCTGTCTCGCGATTCTCAATCAATCT
TGAAAGACAGATATTATATATGTTAGGCCTTATATAGGTCTGTTGTTGATTATTTTTTGCAGGGATGGGAA

Intron 2 GTAAGGAGTT ... TTTTTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	17.98	223.5	5	49
A2	18.36	244.5	2	55
A3	15.39	248.8	8	45.3
A4	21.09	233	4	62.3
A5	16.33	112.8	4	22
A6	18.8	808	14	187
A7	19.6	1767.3	32	430.8
A8	18.65	1674	18	383.8
A9	16.05	2375.3	44	454.3
A10	20.04	1953.8	43	489.8

>TRINITY_DN44488_c0_g1_i1 from sample A8 / Example spliced isoform

TGTGACTTCTTTGGTTATTCTTGCGGTTGGGTCTTTTCCTAGCATGTTGTAGCAACCACTCTTAGTTATATGTTCAAGCATTTTTGTATGATAAGTTGTGGTGTCCATAATTACAGTTGCATTACACTTATCGTCTTTCATAATCATAATGTATCCATTCATTTTTAACTTCTTTAACGCAAGTTAGGAATCTTAGAATC
GAATCTCGCTCAATCAAAAGGGCGAGGTACGTGACCGACGTTTACATTCTTTAAATAGATAAAGGGAACCCGATACGAAGAGGATATATTTTTCTCGGCAGACAGGCAACTACGTTCTCGTTGGCTCTCTCTGTGAAGGAACCCTCCACACTTGCAGGCGACGATCGGAATAAACAGAGGATGGGAAGAGGGAAAATAGA
GATAAAAAAGATAGAAAATCCAGTAGGCAGGAAGGCCACCTTCTTCAAGCGAAGAGTAGGTCTGATAAAGAAGGCCAGAGAATTGTCCATCCTCTGCGATGCAGAAATAGCAGTCCTCATCTTTTCAAGCAATGGAAAGCTCTTCGAATTCGCCAGTTCAGAGACGAAAAGCATACTGGATCGTTACAGCAAATGCTCTG
AACAAACATCACTATCAGAATCACGTGCATTAGCAGCCGAATGCAGCGATAGTAATCATAATAGAAACCAGAGCGCCGAGGCCACGGTGTTCAAGCTTCAAGTAGAAAAGCTGCAGGTGATGCTCAAGAGAATGATGGGAGAAGATCTAGAAGGATTGGATACTGATCAATTACAACAACTAGAGGAGAAATTGGAGCTG
GGAATCAGTCGGGTGAGGGCGAGAAAAAACCGATCCATACTGAAATGCATAGAGCAGATAACGAAAAATGAGCGGAATCTAATAGAGGAGAATAAGGGTTTGCGGCGAGAGGTGCAGGACATTGCGGATAATGAATTTCTAAGAGCTATTCCTTAGACTTAATTGTAATTGATTTTTAATCATTTTTAATGGATTATAAT
GGATATTAATTGGGTCCCTGACAATGCTCAGATTTATATGATGCTGTTGTAATTGCCCTGAATTTTGCCCAAATTATTGTAGTACAAGTTCGAATAATTGTTTTGACGCACATTCACACCTGATTCTTCTTTCTCGCTTGTGGTTTGCTTATAGTAGCACTATATCAATGTTATCCATCGAACATATATAATTCTGAGAG
ATCAAATTTGTTTGTGTTTACCTCTGTTTTATGGTGTAAAAAATTAGAGAAAGCATCTACAAAGGAAAAATTTGTAGGTTATGAATTTTTATAATACATTTTGATTTAAATATAATCTTGAAGTTACAAGCTGTTCTTATGAATTAATCTCATAAATCTAACCTAAATAAGACTGAGTGAGATTTTATAAATTGTGAAAA
TTTGTTTTGAAAACTATTTTAAAAGGTAAGAAATGATTTGTATATTCTATATATAGTTCCATAAAGAGACCTGTCCTTTCTTTCCCAGGTTATCAAGTTTTTATTACTTCTTGGCGTCTTCTGGACCAGATTCTTCATCAATTCTGTCTCGCGATTCTCAATCAATCTTGAAAGACAGATATTATATATGTTAGGCCTTA
TATAGGTCTGTTGTTGATTATTTTTTGCAGGGATGGGAA

>TRINITY_DN44488_c0_g1_i7 from sample A8 / Example unspliced isoform:

TGTGACTTCTTTGGTTATTCTTGCGGTTGGGTCTTTTCCTAGCATGTTGTAGCAACCACTCTTAGTTATATGTTCAAGCATTTTTGTATGATAAGTTGTGGTGTCCATAATTACAGTTGCATTACACTTATCGTCTTTCATAATCATAATGTATCCATTCATTTTTAACTTCTTTAACGCAAGTTAGGAATCTTAGAATC
GAATCTCGCTCAATCAAAAGGGCGAGGTACGTGACCGACGTTTACATTCTTTAAATAGATAAAGGGAACCCGATACGAAGAGGATATATTTTTCTCGGCAGACAGGCAACTACGTTCTCGTTGGCTCTCTCTGTGAAGGAACCCTCCACACTTGCAGGCGACGATCGGAATAAACAGAgtaaggagtttcccaatcttgt
tactctttaaatagcaaacagcaaaccccttaaataggtttttcaaagcccttaaataggttttccttttcatactaacccttgaaagtagctcgatttaaaagcataaatctctgcatcgcacattgattatccaacgaatagcttattattatccactcgcccccaaaacagacagttctaatttcatctacttgcta
aaaatcatagcagctttaaaaaatcattttccatatggagactttcatttctttcccaggctatcaattctttattacttcttgtcatcttctgcatcggattctttatcaattctgtctcgggattcttaatcaatcttgaaagaaagacagatattatcatatcttaggccttatacaggtctgttgattattattat
tattttttgcagGGATGGGAAGAGGGAAAATAGAGATAAAAAAGATAGAAAATCCAGTAGGCAGGAAGGCCACCTTCTTCAAGCGAAGAGTAGGTCTGATAAAGAAGGCCAGAGAATTGTCCATCCTCTGCGATGCAGAAATAGCAGTCCTCATCTTTTCAAGCAATGGAAAGCTCT

Intron 3 GTAAGGAGTT ... TTTTTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	10.14	186	0.7	21
A2	11.48	185	4	24
A3	7.44	199	6.3	16
A4	10.38	190	4.3	22
A5	9.38	87	1	9
A6	11.75	676	11	90
A7	12.29	1456	13	204
A8	11.59	1366	16	179
A9	9.25	1961	8	200
A10	11.36	1607	24.3	206

>TRINITY_DN44488_c0_g1_i3 from sample A8 / Example spliced isoform

TGTGACTTCTTTGGTTATTCTTGCGGTTGGGTCTTTTCCTAGCATGTTGTAGCAACCACTCTTAGTTATATGTTCAAGCATTTTTGTATGATAAGTTGTGGTGTCCATAATTACAGTTGCATTACACTTATCGTCTTTCATAATCATAATGTATCCATTCATTTTTAACTTCTTTAACGCAAGTTAGGAATCTTAGAATC
GAATCTCGCTCAATCAAAAGGGCGAGGTACGTGACCGACGTTTACATTCTTTAAATAGATAAAGGGAACCCGACACGAAGAGGAAATATTTTTCTTGGCAGACAGGCAACTACGTTCTCGTTGGCTCTCTCTGGGAAGGAACCATCCACACTTGCAGGCGATCTGAATAAACAGAATATGGGAAGAGGGAAAATAGAGAT
AAAAAAGATAGAAAATCCAGGGCAAAGGCAGTTCGCCTTCTCCAAGCGAAGACTAGGTCTGATAAAGAAGGCCAGAGAATTGTCCATCCTCTGCGATGCAGAAATAGCAGTCCTCATCTTTTCAAGCAATGGAAAGCTCTTCGAATTCGCCAGTTCAGAGACGAAAAGCATACTGGATCGTTACAGCAAATGCTCTGAAC
AAACATCACAATCAGAATCACGTGCCTTAGCAGCCGAATGCAGCGATAATAATCATAATAGAAACCAGAGCGCCGAGGCCACGGTGTTCAAGCTTCAAGTAGAAAAGCTGCAGGTGATGCTCAAGAGAATGATGGGAGAAGATCTAGAAGGATTGGATACTGATCAATTACAACAACTAGAGGAGAAATTGGAGCTGGGA
ATCAGTCGGGTGAGGGCGAGAAAAAACCGATCCATAATGAATCGCATAGAGCAGATAACGAAAAATGAGCGGAATCTAATAGAGGAGAATAAGGGTTTGCGGCGAGAGGTGCAGGACATTGCGGATAATGAATTTCAAAGAGCTATTCCTTAGACTTAAATGTAATTGATTTTTAATGGATTATAATGGATATTAATTGG
ATCCCTGACAATGCTCAGATTTATATGATGCTGTTG

>TRINITY_DN44488_c0_g1_i6 from sample A8 / Example unspliced isoform:

TACGAAGAGGATATATTTTTCTCGGCAGACAGGCAACTACGTTCTCGTTGGCTCTCTCTGGGAAGGAACCATCCACACTTGCAGGCGATCTGAATAAACAGAgtaaggagtttcccaatcttgttactctttaaatagcaaacagcaaaccccttaaataggtttttcttttcatactaacccttgaaagtagctcgatt
taaaacgcataaatcatctcacatggatcatccaacgaatagcgtattattatccactcgcccccaaaacagacagctctaactttatctacttgctaaaaatcatagcagctttaaaaaatcattttccatatggagacttgtcatttctttcccaggctatcaattttttatttcttcttgacatcttctgcatcgga
ttctttatcaattctgtctcgggattcttaatcaatcttgaaagaaagacagatattatcatatcttaggccttatacaggtctgttgattattattttttgcagATATGGGAAGAGGGAAAATAGAGATAAAAAAGATAGAAAATCCAGGGCAAAGGCAGTTCGCCTTCTCCAAGCGAAGACTAGGTCTGATAAAGAAG
GCCAGAGAATTGTCCATCCTCTGCGATGCAGAAATAGCAGTCCTCATCTTTTCAAGCAATGGAAAGCTCTTCGAATTCGCCAGTTCAGAGACGAAAAGCATACTGGATCGTTACAGCAAATGCTCTGAACAAACATCACAATCAGAATCACGTGCCTTAGCAGCCGAATGCAGCGATAATAATCATAATAGAAACCAGAG
CGCCGAGGCCACGGTGTTCAAGCTTCAAGTAGAAAAGCTGCAGGTGATGCTCAAGAGAATGATGGGAGAAGATCTAGAAGGATTGGATACTGATCAATTACAACAACTAGAGGAGAAATTGGAGCTGGGAATCAGTCGGGTGAGGGCGAGAAAAAACCGATCCATACTGAAATGCATAGAGCAGATAACGAAAAATGAGC
GGAATCTAATAGAGGAGAATAAGGGTTTGCGGCGAGAGGTGCAGGACATTGCGGATAATGAATTTCTAAGAGCTATTCCTTAGACTTAATTGTAATTGATTTTTAATCATTTTTAATGGATTATAATGGATATTAATTGGGTCCCTGACAATGCTCAGATTTATATGATGCTGTTGTAATTGCCCTGAATTTTGCCCAAA
TTATTGTAGTACAAGTTCGAATAATTGTTTTGACGCACATTCACACCTGATTCTTCTTTCTCGCTTGTGGTTTGCTTATAGTAGCACTATATCAATGTTATCCATCGAACATATATAATTCTGAGAGATCAAATTTGTTTGTGTTTACCTCTGTTTTATGGTGTAAAAAATTAGAGAAAGCATCTACAAAGGAAAAATTT
GTAGGTTATGAATTTTTATAATACATTTTGATTTAAATATAATCTTGAAGTTACAAGCTGTTCTTATGAATTAATCTCATAAATCTAACCTAAATAAGACTGAGTGAGATTTTATAAATTGTGAAAATTTGTTTTGAAAACTATTTTAAAAGGTAAGAAATGATTTGTATATTCTATATATAGTTCCATAAAGAGACCTG
TCCTTTCTTTCCCAGGTTATCAAGTTTTTATTACTTCTTGGCGTCTTCTGGACCAGATTCTTCATCAATTCTGTCTCGCGATTCTCAATCAATCTTGAAAGACAGATATTATATATGTTAGGCCTTATATAGGTCTGTTGTTGATTATTTTTTGCAGGGATGGGAA