sp|P48000|KNAT3_ARATH ----> Homeobox protein knotted-1-like 3
Intron 1 GTAGCGGAGG ... CGTTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 39.08 | 106 | 58 | 78 |
| A2 | 45.23 | 66 | 61 | 48 |
| A3 | 47.52 | 90 | 82 | 81 |
| A4 | 39.77 | 78 | 54 | 49 |
| A5 | 49.23 | 33 | 28 | 36 |
| A6 | 43.06 | 80 | 62 | 59 |
| A7 | 36.74 | 272 | 152 | 164 |
| A8 | 43.86 | 80 | 54 | 71 |
| A9 | 32.01 | 205 | 83 | 110 |
| A10 | 31.99 | 246 | 92.5 | 139 |
>TRINITY_DN114450_c0_g1_i2 from sample A1 / Example spliced isoformCAAATATATTGGGGCCACGTTACGGCCCGATTAGACTTGGTGCTCCACTTTCTTTCACTTCCGACTAACCAACTACCGTCCAAGTAAGGAAACTGGCAATCAAAGGAAACTCTGAAAATAACATATACATATATTCTAAAGCTAAACGGTAGCAAAAGTCGTCGTCAGGGTTTTGTTTTGGCTGCCGATTTCATTAGACG
GCCGGCAGACGGTTTGCTGTTAGAACAGCAAGCAGCAAGCAGGTAGTGGAGTAGGATAGTGGTTTTGTGGTCCCGACGGTGAAGCTGTTGGGTTGTTGACGAGTGTAAGCGGGGAATTGGTGGAAAACAAGCGGTATCTGCCCGACTTGCAGAAGAAAGCAGGATTATCTGAGCGGAAGCGGTTTTCTTTCTTCTGCAAG
TCGCTCTTCTCTTCTACAAAGCCGCCGCCGCCGGAAGTTGCAGGAGACTAGGACGCTGCTGGCCAGAACCTCCGGAATTCCAAGAATTCGGCCCAGCGGAATAAAGAGCAGCGTTTGGACGGAGGAGGGACAAGATATTCGGAGCGAGCCGCGCCGGCGAGTCAATTGGGAATCGGGGAGGAAGAAAAGGAGGAAATTCC
GATTCCTAGGCTGAGATACGGAAGCTTGGGGTATACGGAAGCATCGTCTTCATCGTCATCCGGTAAGGCGGCATTGGCAGGAGGCGGTGAGCGTGGAGGTGGAGATAAGGTGCCCATGCTTGTGCTTCCTCTTATGAGTGAATCCGGGAGTGCGAGTGATAATAACGTTAAGCTTGGAGCACATAACACTTGGCTCAGTA
GAGCCGTCTCGGGACAGCACAGGCAGCAGCAGCAGTACGCAGAACAGAGAGTGGAAGAGGGCAGGAAATGGTGCAGCTGCGCACCCGGCTCTGGCGGCTGTATTCACTGTAGTTTCTTGAAGCTGCAGAACCCGGCAAGCGGGGGTTCGAGCTCGGCCACCGCCAACGCTCTGTCCAGTAGATGGCTAATGCCCGGGCCT
TTGTTGAGCGACAAGATTGAGGAGGGGAGGGAAAGGGTAGAGCTTCTTGGAGGGGAAATTCCGGGCGAGTCTATTATGGCATTATCCGCGCAATTTAAGACGACGGGTTCTGCTACCCCGGAAAGGGGGCTGTTAGATCTTCATTCGGCCAATGCAATGAATAGCAATGGAGAGCCTGTAGATAGCGGAGGGGCAGGTGG
AGACAGAGACGGAAGAGGGGAGGCGGATGATCATGCGGCGTTATGGCAAAGCGCGAGGATTAAAGCGGACGTTGTCTCGCATCCGCTTTACGACCAGTTATTGTCGGCACACCTGGAGTGTCTTCGCATTGCAACTCCGAAGGATCAGCACTCGAGGATTGACGCGCAATTGGCGCAGTCGCAGCATGTCGTCACCAAAT
ATTCCATGCTTGGCAATGATAATATCCTTGTCGGCGATAGGAAAGAGCTCGATCAGTTCATGACACAATATGTTTTACTGCTTTGTTCGTTCAAGGAGCAGCTGCAATATCACGTTCATGTTCATGTAATGGAAGCAGTGAGAGCATGCATTGACCTTCAGCATTCTCTTCTAACACTAACAGGAGTGTCACCTGGAGAA
GGCACTGGTGCAACCATGTCAGATGATGAAGATGATAATGTAGATAGTGACACCGATCTTTATGATGGAGGTTTAGATGGTGGGCAGGATACTGTAGGACTTGGGCCCCTGATACCCACTGAGAGTGAGCGGTCTCTTATGGAACGGGTTAGACAGGAGCTCAAGGTAGACCTGAAGCAGGGATACAGAGCAAAAATTGC
AGATGTAAGAGAGGAGATCTTGCGTAAGCGCAGAGCGGGAAAGCTTCCTGGTGATACAACATCTCGGTTGAAGACTTGGTGGCAATCACATTCTAAATGGCCTTACCCAACTGAAGATGAGAAGGCGAGACTTGTACAGGAAACAGGCCTGCAGCTTAAGCAGATCAATAATTGGTTTATCAACCAGCGGAAACGTAACT
GGCATAGTAATCCTTCCTCATCTACCACTTTAAAATCCAAGCGCAAGAGGTGATGAGGCTTTGATAATACTTACAGTAGTAGATCAACTCTATACTTAACCTACAGCATACGTTATTGTACAAACAGTTCACTTAACTCCTACTTGAGTAGGCGCCGCCAATGGAATGATGTGTTTGTGCTTGGCTTGTAGTATAACAGA
GCATTTTTCAAATTAGGAGAGAAGCTTATCGAACTTCCAAGGGAGAAGTGGAAGCATGGGAAGTCATCGAACAGTGAAAATTCCAATGAATTTTACAGCAGAGGACTGCAGAGCAGAGGAGAGGAGATGAAGTTGAGAGCATCTTTACACCATATATTAAGTTCAATGCCCACAACATAATTTGGCAATGCCTTGATGGT
CATCCTCGATCATAAAGTTACTCAAAGGGAGCAGCTAAACTAATGCATCCTATACATAGAGCCTGAAGCTTTTTAAGGCCTAACACAACACATATGTTTCCCTATTTTTTTACATGCATATGTGGAATTGATAGATGACCCCTAAACCAATTCCAACCTTTTTCTTTATCAATAAGAAGCGACAGTTCCCAGATGTATAA
GAATGTTTCAACATCAAATTTAATTTGTGAGCTCAGTTTTTTATTATATTTCGTAAGGCTCCTGTTATTGATTGTAGTCTGGTATGCTGTGCCGGTTGTGTGGAATTCACCATTGTAGTCTGGTATGCTGTGCCGGTTGTGTGGAATTCACCACCTGTAATGTCACAGTTTCATACAAGTGAGCACTGAGAATTCCCACC
AGTAGCTTCTCTGGTGGTATTTTCTTTCTTGTTAGTCCAACTTTTTTATTAGGTTGTATTCATCCATGTTTGGAATAGGCATCCTACGGAAAGAGAATAAATTTGACCATGTAGCTCTGAATAGTTTCGAAAGCCTCTTCTATCTGCATTTTTAATGGCACATTGACCTCCTACAATTTATGCAGGGTGCATCAATTTTC
TTGTAATCGTATCCTTCTCATTATAATATCCATCAGTATTTAACAAGCA
>TRINITY_DN114450_c0_g1_i4 from sample A1 / Example unspliced isoform:CAAATATATTGGGGCCACGTTACGGCCCGATTAGACTTGGTGCTCCACTTTCTTTCACTTCCGACTAACCAACTACCGTCCAAGTAAGGAAACTGGCAATCAAAGGAAACTCTGAAAATAACATATACATATATTCTAAAGCTAAACGGTAGCAAAAGTCGTCGTCAGGGTTTTGTTTTGGCTGCCGATTTCATTAGACG
GCCGGCAGACGGTTTGCTGTTAGAACAGCAAGCAGCAAGCAGGTAGTGGAGTAGGATAGTGGTTTTGTGGTCCCGACGGTGAAGCTGTTGGGTTGTTGACGAGTGTAAGCGGGGAATTGGTGGAAAACAAGCGGTATCTGCCCGACTTGCAGAAGAAAGCAGGATTATCTGAGCGGAAGCGGTTTTCTTTCTTCTGCAAG
TCGCTCTTCTCTTCTACAAAGCCGCCGCCGCCGGAAGTTGCAGGAGACTAGGACGCTGCTGGCCAGAACCTCCGGAATTCCAAGAATTCGGCCCAGCGGAATAAAGgtagcggaggtagcttgaatcctttttggtgttttagctttaaaattactgtgtgaattagccatggcgttccacagcctatctcacgacatgc
cattgccgcgtttttcagAGCAGCGTTTGGACGGAGGAGGGACAAGATATTCGGAGCGAGCCGCGCCGGCGAGTCAATTGGGAATCGGGGAGGAAGAAAAGGAGGAAATTCCGATTCCTAGGCTGAGATACGGAAGCTTGGGGTATACGGAAGCATCGTCTTCATCGTCATCCGGTAAGGCGGCATTGGCAGGAGGCGGT
GAGCGTGGAGGTGGAGATAAGGTGCCCATGCTTGTGCTTCCTCTTATGAGTGAATCCGGGAGTGCGAGTGATAATAACGTTAAGCTTGGAGCACATAACACTTGGCTCAGTAGAGCCGTCTCGGGACAGCACAGGCAGCAGCAGCAGTACGCAGAACAGAGAGTGGAAGAGGGCAGGAAATGGTGCAGCTGCGCACCCGG
CTCTGGCGGCTGTATTCACTGTAGTTTCTTGAAGCTGCAGAACCCGGCAAGCGGGGGTTCGAGCTCGGCCACCGCCAACGCTCTGTCCAGTAGATGGCTAATGCCCGGGCCTTTGTTGAGCGACAAGATTGAGGAGGGGAGGGAAAGGGTAGAGCTTCTTGGAGGGGAAATTCCGGGCGAGTCTATTATGGCATTATCCG
CGCAATTTAAGACGACGGGTTCTGCTACCCCGGAAAGGGGGCTGTTAGATCTTCATTCGGCCAATGCAATGAATAGCAATGGAGAGCCTGTAGATAGCGGAGGGGCAGGTGGAGACAGAGACGGAAGAGGGGAGGCGGATGATCATGCGGCGTTATGGCAAAGCGCGAGGATTAAAGCGGACGTTGTCTCGCATCCGCTT
TACGACCAGTTATTGTCGGCACACCTGGAGTGTCTTCGCATTGCAACTCCGAAGGATCAGCACTCGAGGATTGACGCGCAATTGGCGCAGTCGCAGCATGTCGTCACCAAATATTCCATGCTTGGCAATGATAATATCCTTGTCGGCGATAGGAAAGAGCTCGATCAGTTCATGACACAATATGTTTTACTGCTTTGTTC
GTTCAAGGAGCAGCTGCAATATCACGTTCATGTTCATGTAATGGAAGCAGTGAGAGCATGCATTGACCTTCAGCATTCTCTTCTAACACTAACAGGAGTGTCACCTGGAGAAGGCACTGGTGCAACCATGTCAGATGATGAAGATGATAATGTAGATAGTGACACCGATCTTTATGATGGAGGTTTAGATGGTGGGCAGG
ATACTGTAGGACTTGGGCCCCTGATACCCACTGAGAGTGAGCGGTCTCTTATGGAACGGGTTAGACAGGAGCTCAAGGTAGACCTGAAGCAGGGATACAGAGCAAAAATTGCAGATGTAAGAGAGGAGATCTTGCGTAAGCGCAGAGCGGGAAAGCTTCCTGGTGATACAACATCTCGGTTGAAGACTTGGTGGCAATCA
CATTCTAAATGGCCTTACCCAACTGAAGATGAGAAGGCGAGACTTGTACAGGAAACAGGCCTGCAGCTTAAGCAGATCAATAATTGGTTTATCAACCAGCGGAAACGTAACTGGCATAGTAATCCTTCCTCATCTACCACTTTAAAATCCAAGCGCAAGAGGTGATGAGGCTTTGATAATACTTACAGTAGTAGATCAAC
TCTATACTTAACCTACAGCATACGTTATTGTACAAACAGTTCACTTAACTCCTACTTGAGTAGGCGCCGCCAATGGAATGATGTGTTTGTGCTTGGCTTGTAGTATAACAGAGCATTTTTCAAATTAGGAGAGAAGCTTATCGAACTTCCAAGGGAGAAGTGGAAGCATGGGAAGTCATCGAACAGTGAAAATTCCAATG
AATTTTACAGCAGAGGACTGCAGAGCAGAGGAGAGGAGATGAAGTTGAGAGCATCTTTACACCATATATTAAGTTCAATGCCCACAACATAATTTGGCAATGCCTTGATGGTCATCCTCGATCATAAAGTTACTCAAAGGGAGCAGCTAAACTAATGCATCCTATACATAGAGCCTGAAGCTTTTTAAGGCCTAACACAA
CACATATGTTTCCCTATTTTTTTACATGCATATGTGGAATTGATAGATGACCCCTAAACCAATTCCAACCTTTTTCTTTATCAATAAGAAGCGACAGTTCCCAGATGTATAAGAATGTTTCAACATCAAATTTAATTTGTGAGCTCAGTTTTTTATTATATTTCGTAAGGCTCCTGTTATTGATTGTAGTCTGGTATGCT
GTGCCGGTTGTGTGGAATTCACCATTGTAGTCTGGTATGCTGTGCCGGTTGTGTGGAATTCACCACCTGTAATGTCACAGTTTCATACAAGTGAGCACTGAGAATTCCCACCAGTAGCTTCTCTGGTGGTATTTTCTTTCTTGTTAGTCCAACTTTTTTATTAGGTTGTATTCATCCATGTTTGGAATAGGCATCCTACG
GAAAGAGAATAAATTTGACCATGTAGCTCTGAATAGTTTCGAAAGCCTCTTCTATCTGCATTTTTAATGGCACATTGACCTCCTACAATTTATGCAGGGTGCATCAATTTTCTTGTAATCGTATCCTTCTCATTATAATATCCATCAGTATTTAACAAGCA