sp|Q9SJG2|Y2296_ARATH ----> Probable receptor-like protein kinase At2g42960

Intron 1 GTTAATACTC ... GTTTGGACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	71.48	17.5	18.5	44
A2	94.53	3	17	52
A3	90.37	4.5	10.5	42.5
A4	95.33	1	7	20.5
A5	70.95	6.5	7.5	16
A6	91.16	16.5	42.5	172.5
A7	92.12	14	39.5	168
A8	91.42	25	56	269
A9	88.87	22	39	178.5
A10	94.53	5	20.5	89

>TRINITY_DN49142_c2_g1_i8 from sample A7 / Example spliced isoform

CCGGGTCTTGGGGACTTTTGGGAATCTCTGCTGTTAGTGTTTTACGGAGCCTTGGATTTTCAGCTACGTTGCACCCAAGAATGCCAACACAAAGATGTTGAATGAGAGAAGCGATGCCTACAACTTTGGAGTACTTATCATGGAGATTATTTTAAGAAGAAGCCCCGTTGATTATGGCAGACCTGCTAGGGAGTTTGCAG
GTAAACTTGGTAGAGTGGCTGAAAATGATGATGAGGAGCCAAAGCTCTGAGGAAGTGGTAGATCCATTGCTCGAAGTTAAACCCTCATCCAGGGCATTATATATATACACTGCTGTTCAGGGCAGGTCGTGAGAATTCTAACTCAACCCAAACGGCAATACAGATGCCAACATTAGTGAAGGCGAAGCCAGCAGCCCCAG
ACACAGGACGAGGCGGAGATTGTGGGATTTTTTCTTAATATCATATATTTTCTTTAATAAATAATCTCCTGAAAACGATCAGACAATCTCAGAGAAAAGATCGAAATGTTGAGAGCCCCATCAAAACAATAACGCAGTTCCAGAATTCACAAATAAATAATCTAACAATCTAGACTGCAACAAATAATCTAATGTATATC
CGACACTCATTAATTCCAATTAGTAAAATCCAACGCTCATTGAATTCCAATTAGTCTTTTTGCAAGTTGTAATTTTCCCAATTACAATAAAGTGGGGATTATTTCAGTTATATTGTAATTGAATTCTAATTAGTCTTTCTGTTTACAATTATGTTGCACAGTTTTTATGCAAGTTGGGATTTTTACAATTATATTGTATT
CACTTTTTTACTATCTCAGGTACAAGTAGTCATATAAGCATGTGC

>TRINITY_DN49142_c2_g1_i5 from sample A7 / Example unspliced isoform:

CCGGGTCTTGGGGACTTTTGGGAATCTCTGCTGTTAGTGTTTTACGGAGCCTTGGATTTTCAGCTACGTTGCACCCAAGAATGCCAACACAAAGATGTTGAATGAGAGAAGCGATGCCTACAACTTTGGAGTACTTATCATGGAGATTATTTTAAGAAGAAGCCCCGTTGATTATGGCAGACCTGCTAGGGAGTTTGCAG
GTAAACTTGGTAGAGTGGCTGAAAATGATGATGAGGAGCCAAAGCTCTGAGGAAGTGGTAGATCCATTGCTCGAAGTTAAACCCTCATCCAGGGCATTATATATATACACTGCTgttaatactctacaactagatgcttattgcttgccataattttcttttaccttgcaggtatttcatagttatacaatctgaaacat
cactgaaacatggattttgtttgtttggacagGTTCAGGGCAGGTCGTGAGAATTCTAACTCAACCCAAACGGCAATACAGATGCCAACATTAGTGAAGGCGAAGCCAGCAGCCCCAGACACAGGACGAGGCGGAGATTGTGGGATTTTTT

Intron 2 GTTAATACTC ... GTTTGGACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	84.62	8	23	44
A2	92.06	5	21	58
A3	86.54	7	20	45
A4	95.65	1	7	22
A5	75	6	14	18
A6	83.93	36	48	188
A7	87.44	28	43	195
A8	90.09	33	66	300
A9	86.4	34	47	216
A10	92.37	9	21	109

>TRINITY_DN44825_c2_g3_i6 from sample A9 / Example spliced isoform

AGGACATTGAAACAAAGCATTGCTGTATCCCTGCGTTGCATGGATCCAGATGCCGACAAGAAGCCAAAGATATATATATATATAGAGAGAGAGACTGTTGGATATCTGTGCTGGCATCAGACTATATATATATATATATACATACACTGCTGATCGGAGCAGGTCGTGAGAATTCTAACTCAACCCAATACAGATGCCAA
CACAAGTGAAGGCGGAGCCAGCAGCCCCAGACACAGGACGAGGCGGAGATTGTGGGATTTTTTCTTCATATCATATATTTTCTTTAATAAATAATCTCCTGAAAACGATCTCAGAGAAAAGATCGAAATGTTGAGAGCCCCATCAAAACAATAACGCAGTTCCAGAATTCACAAATAAATAATCTAACAATCTAGACTGC
AACAAATAATCTAATGTATATCCGACACTCATTAAATTCCAATTAGTCTTTTTGCAA

>TRINITY_DN44825_c2_g3_i10 from sample A9 / Example unspliced isoform:

AGGACATTGAAACAAAGCATTGCTGTATCCCTGCGTTGCATGGATCCAGATGCCGACAAGAAGCCAAAGATATATATATATATAGAGAGAGAGACTGTTGGATATCTGTGCTGGCATCAGACTATATATATATATATATACATACACTGCTgttaatactctgcaactaaatgcttattgcttgccatacttttctttta
tcttgcaggtatttcatagttatacaatttgaaacttcactgaaacatggattttgtttgtttggacagGATCGGAGCAGGTCGTGAGAATTCTAACTCAACCCAATACAGATGCCAACACAAGTGAAGGCGGAGCCAGCAGCCCCAGACACAGGACGAGGCGGAGATTGTGGGATTTTTTCTTCATATCATATATTTTC
TTTAATAAATAATCTCCTGAAAACGATCTCAGAGAAAAGATCGAAATGTTGAGAGCCCCATCAAAACAATAACGCAGTTCCAGAATTCACAAATAAATAATCTAACAATCTAGACTGCAACAAATAATCTAATGTATATCCGACACTCATTAAATTCCAATTAGTCTTTTTGCAA

Intron 3 GTTAGTATAT ... TAGTTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	59.14	19	29	26
A2	58.42	21	27	32
A3	68.67	13	16	41
A4	70	6	19	9
A5	68.75	5	11	11
A6	42.31	15	7	15
A7	44.19	36	21	36
A8	41.46	36	16	35
A9	58.14	18	15	35
A10	54.17	11	11	15

>TRINITY_DN122493_c2_g1_i3 from sample A1 / Example spliced isoform

GGAAAGAGTCACATTTATTTAGGTTTTCCTTTTTACTATATGGTTTGACCATATCAATCTGTGGGACTGGGGAAAACAAACTTGATTGAATATTGGGTATTGGGAATCTCTGCTGTTAGTGTTTTACGGAGCCTTGTAGTTTCAGCTACGTTGCACCCAAGAATGCCAACACAAAGATGTTGAATGAGAGAAACGATGTC
TACAGCTTTGGATTACTTATCATGGAGATTATTTTAAGAAGAAGCCCCGTTGATTATGGCAGACCTGCTAGGGAGGTAAACTTGGTAGAGTGGTTGAAAATGATGGTGAGGAGCCAAAGCTCTGAGGAAGTGGTAGATCCATTGCTCGAAGTTAAACCCTCATCCAGGGCATTGAAACAAGCATTGCTGTATCCCTGCGT
TGCTTGGATCCAGATGCCGCCAAGAAGCCAAAGATATATATATATATAGAGAGAGAGACTGTTGGATATCTGTGCTGGCATCAGACTATATATATATATATATACATACACTGCTGATCGGAGCAGGTCGTGAGAATTCTAACTCAACCCAATACAGATGCCAACACAAGTGAAGGCGGAGCCAGCAGCCCCAGACACAG
GACGAGGCGGAGATTGTGGGATTTTTTCTTCATATCATATATTTTCTTTAATAAATAATCTCCTGAAAACGATCAGACAATCTCAGAGAAAAGATCGAAATGCTGAGAACCCCATCAAAACAATAACGCAGTTCCAGAATTCACAAATAAATAATCTAACAATCTAGACTGCAACAAATAATCTAATGTATATCCGACAC
TCATTAATTCCAATTAGTAAAATCCAACGCTCATTGAATTCCAATTAGTCTTTTTGCAAGTTGTAATTTTCCCAATT

>TRINITY_DN122493_c2_g1_i2 from sample A1 / Example unspliced isoform:

GGAAAGAGTCACATTTATTTAGGTTTTCCTTTTTACTATATGGTTTGACCATATCAATCTGTGGGACTGGGGAAAACAAACTTGATTGAATATTGGGTATTGGGAATCTCTGCTGTTAGTGTTTTACGGAGCCTTGTAGTTTCAGCTACGTTGCACCCAAGAATGCCAACACAAAGATGTTGAATGAGAGAAACGATGTC
TACAGCTTTGGATTACTTATCATGGAGATTATTTTAAGAAGAAGCCCCGTTGATTATGGCAGACCTGCTAGGGAGgttagtatatacagttcctttatatcgatggctgaatctcttcaaacattttcatttaaattaacagagttatatctttaaggtctcaaggtggaatgaatctttttgaatttaaatagtttgca
gGTAAACTTGGTAGAGTGGTTGAAAATGATGGTGAGGAGCCAAAGCTCTGAGGAAGTGGTAGATCCATTGTGCGAAGTTAAACTCTCATCCAGGGCACTGAAACAAGCATTGCTGTATCCCTGCGTTGCTTGGATCCAGATGCCGCCAAGAAGCCAAAGATATATATATATATAGAGAGAGAGACTGTTGGATATCTGTG
CTGGCATCAGACTATATATATATATATATACATACACTGCTGATCGGAGCAGGTCGTGAGAATTCTAACTCAACCCAATACAGATGCCAACACAAGTGAAGGCGGAGCCAGCAGCCCCAGACACAGGACGAGGCGGAGATTGTGGGATTTTTTCTTCATATCATATATTTTCTTTAATAAATAATCTCCTGAAAACGATC
AGACAATCTCAGAGAAAAGATCGAAATGCTGAGAACCCCATCAAAACAATAACGCAGTTCCAGAATTCACAAATAAATAATCTAACAATCTAGACTGCAACAAATAATCTAATGTATATCCGACACTCATTAATTCCAATTAGTAAAATCCAACGCTCATTGAATTCCAATTAGTCTTTTTGCAAGTTGTAATTTTCCCA
ATT

Intron 4 GTTAAACCCT ... GTTTGGACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	74.39	15	10.5	44
A2	94.53	3	6	52
A3	89.44	5	2.5	42.5
A4	100	0	3.5	20.5
A5	75.97	5	3.5	16
A6	91.68	15.5	2	172.5
A7	90.7	17	8	168
A8	91.45	25	5	269
A9	89.18	21.5	6.5	178.5
A10	90.26	9.5	4.5	89

>TRINITY_DN49142_c2_g1_i9 from sample A7 / Example spliced isoform

ATTATGGCAGACCTGCTAGGGAGGTAAACTTGGTAGAGTGGCTGAAAATGATGATGAGGAGCCAAAGCTCTGAGGAAGTGGTAGATCCATTGCTCGAAGTTCAGGGCAGGTCGTGAGAATTCTAACTCAACCCAAACGGCAATACAGATGCCAACATTAGTGAAGGCGAAGCCAGCAGCCCCAGACACAGGACGAGGCGG
AGATTGTGGGATTTTTTTCTTAATATCATATATTTTCTTTAATAAATAATCTCCTGAAAACGATCAGACAATCTCAGAGAAAAGATCGAAATGTTGAGAGCCCCATCAAAACAATAACGCAGTTCCAGAATTCACAAATAAATAATCTAACAATCTAGACTGCAACAAATAATCTAATGTATATCCGACACTCATTAATT
CCAATTAGTAAAATCCAACGCTCATTGAATTCCAATTAGTCTTTTTGCAAGTTGTAATTTTCCCAATTACAATAAAGTGGGGATTATTTCAGTTATATTGTAATTGAATTCTAATTAGTCTTTCTGTTTACAATTATGTTGCACAGTTTTTATGCAAGTTGGGATTTTTACAATTATATTGTATTCACTTTTTTACTATC
TCAGGTACAAGTAGTCATATAAGCATGTGC

>TRINITY_DN49142_c2_g1_i5 from sample A7 / Example unspliced isoform:

CCGGGTCTTGGGGACTTTTGGGAATCTCTGCTGTTAGTGTTTTACGGAGCCTTGGATTTTCAGCTACGTTGCACCCAAGAATGCCAACACAAAGATGTTGAATGAGAGAAGCGATGCCTACAACTTTGGAGTACTTATCATGGAGATTATTTTAAGAAGAAGCCCCGTTGATTATGGCAGACCTGCTAGGGAGTTTGCAG
GTAAACTTGGTAGAGTGGCTGAAAATGATGATGAGGAGCCAAAGCTCTGAGGAAGTGGTAGATCCATTGCTCGAAgttaaaccctcatccagggcattatatatatacactgctgttaatactctacaactagatgcttattgcttgccataattttcttttaccttgcaggtatttcatagttatacaatctgaaacat
cactgaaacatggattttgtttgtttggacagGTTCAGGGCAGGTCGTGAGAATTCTAACTCAACCCAAACGGCAATACAGATGCCAACATTAGTGAAGGCGAAGCCAGCAGCCCCAGACACAGGACGAGGCGGAGATTGTGGGATTTTTT