sp|Q9FPT1|UBP12_ARATH ----> Ubiquitin C-terminal hydrolase 12
Intron 1 GTCACACTAT ... TACTTTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 3 | 0 |
| A2 | 100 | 0 | 5 | 2 |
| A3 | 100 | 0 | 0 | 1 |
| A4 | 33.33 | 3 | 1 | 2 |
| A5 | 100 | 0 | 0 | 1 |
| A6 | 75 | 1 | 3 | 3 |
| A7 | 63.64 | 2 | 5 | 2 |
| A8 | 67.74 | 5 | 9 | 12 |
| A9 | 100 | 0 | 2 | 3 |
| A10 | 50 | 3 | 5 | 1 |
>TRINITY_DN43021_c1_g1_i1 from sample A8 / Example spliced isoformTTACTCGAAGATTTTCTCGGTGGACGGTCATAAATGGATCTGTGATGGTTCAGGCGTGTGTTAATATATCCCAAAGGGAACAAAGTGGACCACTTGTCTATTTATTTAGATGTGGTAGATTCCGCTGCATTACCAAGTGGTTGGAGCAGATATGCTTCGCTCACCTTGGCTGTTGTTAGTCAGACTCGTCAGAAGCTCAC
AATCAAGCAAGAAACAGAACATATGTTTAATGCCAAAAAGAGTGCTTGGGGTTTCACATTGTTCATGCCTCTACTTGACGTTCACGACATCACAAAAGGATATCTGTTAGATGATACTCTGATTGTTGAAGCAGAAGTTGGTGCTCAAAGAGTAGTTGATTATGGTGCATATGATGCTAGAGAACATACAGGTTTCGTTG
GGCTGAAGAATCAAGGGGCAACAAGTACTGATTTTCAATTTTTCTGTGTGAGTAGGAGAAAGCAATGAAGCGTCTCCTTCCCAAAGTAGTGAGTTTGTTGGCGGCAATATTGGAGAGCATGTTATTTCTGTCGTACATGCACAATATAATGATGAGGGGGGTCTACGAAAGAGGCTTGAGCAACAAAAGAGAGTAGAGGG
AGGAGGTGCAGGAGAGGCCCATAATATACATCAGAGTGGGGTCCTAGCAAAGGATTTTAGAGGCGCACCATGCAAGTCAATGACCAAGGAGCAGATATCAATGGTTTTGAGAGACATCACTAGAGGGTTGGTACCCATTGATCTAGAGGATCCTGGATGGCCCTCTAGTGCTGGAGAGATGTCTCAAACCTTTGCCCCAG
TGGTTAGATTAGCTGATGAGTGCAAGGCCTTGAAGGAGGAGGTAGTGAAACAACGTATAAGGGCGACAACCCTAAGTGAATCCATGAAATTATTGGCTCGAGAGGGTGGAGCAAAGCCATAACTTTTGTATAATTTGGATAGGGAGAGATGTATTTGGATATGCCTTTTGAGACACTTTGAATTTGAAAACTTTTCTTTA
TACACGCGATATTTTGTGTTGGG
>TRINITY_DN43021_c1_g1_i8 from sample A8 / Example unspliced isoform:TTACTCGAAGATTTTCTCGGTGGACGGTCATAAATGGATCTGTGATGGTTCAGGCGTGTGTTAATATATCCCAAAGGGAACAAAGTGGACCACTTGTCTATTTATTTAGATGTGGTAGATTCCGCTGCATTACCAAGTGGTTGGAGCAGATATGCTTCGCTCACCTTGGCTGTTGTTAGTCAGACTCGTCAGAAGCTCAC
AATCAAGCAAGAAACAGAACATATGTTTAATGCCAAAAAGAGTGCTTGGGGTTTCACATTGTTCATGCCTCTACTTGACGTTCACGACATCACAAAAGGATATCTGTTAGATGATACTCTGATTGTTGAAGCAGAAGTTGGTGCTCAAAGAGTAGTTGATTATGGTGCATATGATGCTAGAGAACATACAGGTTTCGTTG
GGCTGAAGAATCAAGGGGCAACAAgtcacactatttctctgcttcaattattttctttacttgaaaatttgtgcttatcctatttttcttcttattctacttaaaaaatttaccatactttaaaatttgtgcgtaaactatggttgtttatactttatagGTACTGATTTTCAATTTTTCTGTGTGAGTAGGAGAAAGCA
ATGAAGCGTCTCCTTCCCAAAGTAGTGAGTTTGTTGGCGGCAATATTGGAGAGCATGTTATTTCTGTCGTACATGCACAATATAATGATGAGGGGGGTCTACGAAAGAGGCTTGAGCAACAAAAGAGAGTAGAGGGAGGAGGTGCAGGAGAGGCCCATAATATACATCAGAGTGGGGTCCTAGCAAAGGATTTTAGAGGC
GCACCATGCAAGTCAATGACCAAGGAGCAGATATCAATGGTTTTGAGAGACATCACTAGAGGGTTGGTACCCATTGATCTAGAGGATCCTGGATGGCCCTCTAGTGCTGGAGAGATGTCTCAAACCTTTGCCCCAGTGGTTAGATTAGCTGATGAGTGCAAGGCCTTGAAGGAGGAGGTAGTGAAACAACGTATAAGGGC
GACAACCCTAAGTGAATCCATGAAATTATTGGCTCGAGAGGGTGGAGCAAAGCCATAACTTTTGTATAATTTGGATAGGGAGAGATGTATTTGGATATGCCTTTTGAGACACTTTGAATTTGAAAACTTTTCTTTATACACGCGATATTTTGTGTTGGG
Intron 2 GTCACACTAT ... GTGTGAGTAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 3 | 3 | 3 |
| A2 | 100 | 0 | 5 | 1 |
| A3 | 50 | 1 | 0 | 2 |
| A4 | 60 | 1 | 1 | 2 |
| A5 | 100 | 0 | 0 | 1 |
| A6 | 46.67 | 4 | 3 | 4 |
| A7 | 50 | 3 | 5 | 1 |
| A8 | 69.23 | 4 | 9 | 9 |
| A9 | 52.94 | 4 | 2 | 7 |
| A10 | 42.86 | 4 | 5 | 1 |
>TRINITY_DN45466_c1_g4_i1 from sample A10 / Example spliced isoformGAGAAAGGTGCCCTGTTTACTGTCCTTATTCTTTTTGGGTTTTCTCTTTACTGTGCTGCCGCGCGCTAAGCAATTTTTAATTGGGATTGCATTGGATTTTTAAGCGCGAGTAGTTCAAAGCGATTCCGTTGATCCCATGGAGAACACGCTCACTTATAAATTGAAATTTACATGGACAATTGAACATTTCTCCACGTTGA
ATGCCGAAGAAAATTCCTCAGAGATTTTCTCGGTGGGAGGTCATAAATGGCGTGTGTTAATATATCCCAAAGGGAACAAAGTGGACCACTTGTCTATTTATTTAGATGTGGTAGATTCCGCTGCATTACCAAGTGGTTGGAGCAGATATGCTTCGCTCACCTTGGCTGTTGTTAGTCAGACTCGTCAGAAGCTCACAATC
AAGCAAGAAACAGAACATATGTTTAATGCCAAAAAGAGTGCTTGGGGTTTCACATTGTTCATGCCTCTACTTGACGTTCACGACATCACAAAAGGATATCTGTTAGATGATACTCTGATTGTTGAAGCAGAAGTTGGTGCTCAAAGAGTAGTTGATTATGGTGCATATGATGCTAGAGAACATACAGGTTTCGTTGGGCT
GAAGAATCAAGGGGCAACAAGAGAAAGCAATGAAGCGTCTCCTTCCCAAAGTAGTGAGTTTGTTGGCGGCAATATTGGAGAGCATGTTATTTCTGTCGTACATGCACAATATAATGATGAGGGGGGTCTACGAAAGAGGCTTGAGCAACAAAAGAGAGTAGAGGGAGGAGGTGCAGGAGAGGCCCATAATATACATCAGA
GTGGGGTCCTAGCAAAGGATTTTAGAGGCGCACCATGCAAGTCAATGACCAAGGAGCAGATATCAATGGTTTTGAGAGACATCACTAGAGGGTTGGTACCCATTGATCTAGAGGATCCTGGATGGCCCTCTAGTGCTGGAGAGATGTCTCAAACCTTTGCCCCAGTGGTTAGATTAGCTGATGAGTGCAAGGCCTTGAAG
GAGGAGGTAGTGAAACAACGTATAAGGGCGACAACCCTAAGTGAATCCATGAAATTATTGGCTCGAGAGGGTGGAGCAAAGCCATAACTTTTGTATAATTTGGATAGGGAGAGATGTATTTGGATATGCCTTTTGAGACACTTTGAATTTGAAAACTTTTCTTTATACACGCGATATTTTGTGTTGGGTA
>TRINITY_DN45466_c1_g4_i3 from sample A10 / Example unspliced isoform:GAGAAAGGTGCCCTGTTTACTGTCCTTATTCTTTTTGGGTTTTCTCTTTACTGTGCTGCCGCGCGCTAAGCAATTTTTAATTGGGATTGCATTGGATTTTTAAGCGCGAGTAGTTCAAAGCGATTCCGTTGATCCCATGGAGAACACGCTCACTTATAAATTGAAATTTACATGGACAATTGAACATTTCTCCACGTTGA
ATGCCGAAGAAAATTCCTCAGAGATTTTCTCGGTGGGAGGTCATAAATGGCGTGTGTTAATATATCCCAAAGGGAACAAAGTGGACCACTTGTCTATTTATTTAGATGTGGTAGATTCCGCTGCATTACCAAGTGGTTGGAGCAGATATGCTTCGCTCACCTTGGCTGTTGTTAGTCAGACTCGTCAGAAGCTCACAATC
AAGCAAGAAACAGAACATATGTTTAATGCCAAAAAGAGTGCTTGGGGTTTCACATTGTTCATGCCTCTACTTGACGTTCACGACATCACAAAAGGATATCTGTTAGATGATACTCTGATTGTTGAAGCAGAAGTTGGTGCTCAAAGAGTAGTTGATTATGGTGCATATGATGCTAGAGAACATACAGGTTTCGTTGGGCT
GAAGAATCAAGGGGCAACAAgtcacactatttctctgcttcaattattttctttacttgaaaatttgtgcttatcctatttttcttcttattctacttaaaaaatttaccatactttaaaatttgtgcgtaaactatggttgtttatactttataggtactgattttcaatttttctgtgtgagtagGAGAAAGCAATGA
AGCGTCTCCTTCCCAAAGTAGTGAGTTTGTTGGCGGCAATATTGGAGAGCATGTTATTTCTGTCGTACATGCACAATATAATGATGAGGGGGGTCTACGAAAGAGGCTTGAGCAACAAAAGAGAGTAGAGGGAGGAGGTGCAGGAGAGGCCCATAATATACATCAGAGTGGGGTCCTAGCAAAGGATTTTAGAGGCGCAC
CATGCAAGTCAATGACCAAGGAGCAGATATCAATGGTTTTGAGAGACATCACTAGAGGGTTGGTACCCATTGATCTAGAGGATCCTGGATGGCCCTCTAGTGCTGGAGAGATGTCTCAAACCTTTGCCCCAGTGGTTAGATTAGCTGATGAGTGCAAGGCCTTGAAGGAGGAGGTAGTGAAACAACGTATAAGGGCGACA
ACCCTAAGTGAATCCATGAAATTATTGGCTCGAGAGGGTGGAGCAAAGCCATAACTTTTGTATAATTTGGATAGGGAGAGATGTATTTGGATATGCCTTTTGAGACACTTTGAATTTGAAAACTTTTCTTTATACACGCGATATTTTGTGTTGGGTA
Intron 3 GTTTCGTTGG ... GTGTGAGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 6 | 3 | 3 |
| A2 | 100 | 0 | 5 | 1 |
| A3 | 23.08 | 5 | 1 | 2 |
| A4 | 66.67 | 1 | 2 | 2 |
| A5 | 100 | 0 | 0 | 1 |
| A6 | 55.56 | 4 | 6 | 4 |
| A7 | 50 | 4 | 7 | 1 |
| A8 | 61.29 | 6 | 10 | 9 |
| A9 | 47.37 | 5 | 2 | 7 |
| A10 | 45.45 | 3 | 4 | 1 |
>TRINITY_DN41918_c0_g1_i7 from sample A7 / Example spliced isoformCTTTGAAGAGATGGGCGTGTGCCACTATGGAGGGGGATTTGAACCGAGCTTTAAGGCCATTGCTTGGTTATGGAATTTATTCGTCGAAAATTTGAAGAATTAAGAAAATAACAAATTTGAAATGAAAATATTTTGCATTCGGTCAGTGTTGACGGAGTCGAAATGTCGAGTGAAAGACCTGGTCACGGGTTCGAATATAT
TGATGGCCCAAATGAGAAACAATGACCTGGTTATAGTTCTGAAACGCATCAAAAGGGAACCCACCATTGCGTTATCGAAGACAACGATTCAGGACACACGGTCCACAATGATTGGTCGATTCGTTGAGCGGAAGAATTGGGAGGCCATGCCTATTATCAACAGTATACAGGGAAGGCCTACATTCCCGACTGAAAACATG
GTGAAATACTGTAGGTCCTGCAGGACAGCGGGTACGAAAAGGCCGGGACGAAGAGCGACGAAGGCAACGGTACAGTGTAAGTAGTGGGTTCTCTAGCACTGGGTCATAGCAATTGGTAAAAAATGTGCCAAGTCAAAACCATTTCTAAAAGCAGAATTAGTCTGCAAGTTTTATGAGGACGACCAAGTATTGAGTATACC
CTACCCTAATTACATGCCTTTGGCATAATAAGAGAGAAGATAGTGCGCATTTGTACCAGGTGGTGCAATGCATGACTATCCATATCAGATAGAGAGGAGAGAATGAGTCTTGATTGAAAAGGTTTTCAGATAAATAATCCACTGAGAAAGGTGCCCTGTTTACTTTCCTTATTCTTTTTGGGTTTTCTCTTTACTGTGCT
GCCGCGCGCTAAGCAATTTTTAATTGGGATTGCATTGGATTTTTAAGCGCGAGTAGTTCAAAGCGATTCCGTTGATCCCATGGAGAACACGCTCACTTATAAATTGAAATTTACATGGATAATTGAACATTTTTCCAAGTTAAATGCCAGAAAGCATTACTCGAAGATTTTCTCGGTGGAAGGTCATAAATGGCGTGTGT
TAATATATCCCAGAGGGAACAATGTGGACCACCTGTCTATTTACTTAGATGTGGCAGATTCCGCCAGATTACCAAGTGGTTGGAGCAGATATGCTTCGCTCACCTTGGCTGTTGTTAGTCAGACTCGTCAGAAGCTCACAATCAAGCAAGAAACAGAACATATGTTTAATGCCAAAAAGAGTGCTTGGGGTTTCACATTG
TTCATGCCTCTACTTGACGTTCACGACATCACAAAAGGATATCTGTTAGATGATACTCTGATTGTTGAAGCAGAAGTTGGTGCTCAAAGAGTAGTTGATTATGGTGCATATGATGCTAGAGAACATACAGGAGAAAGCAATGAAGCGTCTCCTTCCCAAAGTAGTGAGTTTGTTGGCGGCAATATTGGAGAGCATGTTAT
TTCTGTCGTACATGCACAATATAATGATGAGGGGGGTCTACGAAAGAGGCTTGAGCAACAAAAGAGAGTAGAGGGAGGAGGTGCAGGAGAGGCCCATAATATACATCAGAGTGGGGTCCTAGCAAAGGATTTTAGAGGCGCACCATGCAAGTCAATGACCAAGGAGCAGATATCAATGGTTTTGAGAGACATCACTAGAG
GGTTGGTACCCATTGATCTAGAGGATCCTGGATGGCCCTCTAGTGCTGGAGAGATGTCTCAAACCTTTGCCCCAGTGGTTAGATTAGCTGATGAGTGCAAGGCCTTGAAGGAGGAGGTAGTGAAACAACGTATAAGGGCGACAACCCTAAGTGAATCCATGAAATTATTGGCTCGAGAGGGTGGAGCAAAGCCATAACTT
TTGTATAATTTGGATAGGGAGAGATGTATTTGGATATGCCTTTTGAGACACTTTGAATTTGAAAACTTTTCTTTATACACGCGATATTTTGTGTTGGGTTTCTGAAAAGTAATTTTTTGTTATGCAAAGATCAAGCCAGAAT
>TRINITY_DN41918_c0_g1_i4 from sample A7 / Example unspliced isoform:CTTTGAAGAGATGGGCGTGTGCCACTATGGAGGGGGATTTGAACCGAGCTTTAAGGCCATTGCTTGGTTATGGAATTTATTCGTCGAAAATTTGAAGAATTAAGAAAATAACAAATTTGAAATGAAAATATTTTGCATTCGGTCAGTGTTGACGGAGTCGAAATGTCGAGTGAAAGACCTGGTCACGGGTTCGAATATAT
TGATGGCCCAAATGAGAAACAATGACCTGGTTATAGTTCTGAAACGCATCAAAAGGGAACCCACCATTGCGTTATCGAAGACAACGATTCAGGACACACGGTCCACAATGATTGGTCGATTCGTTGAGCGGAAGAATTGGGAGGCCATGCCTATTATCAACAGTATACAGGGAAGGCCTACATTCCCGACTGAAAACATG
GTGAAATACTGTAGGTCCTGCAGGACAGCGGGTACGAAAAGGCCGGGACGAAGAGCGACGAAGGCAACGGTACAGTGTAAGTAGTGGGTTCTCTAGCACTGGGTCATAGCAATTGGTAAAAAATGTGCCAAGTCAAAACCATTTCTAAAAGCAGAATTAGTCTGCAAGTTTTATGAGGACGACCAAGTATTGAGTATACC
CTACCCTAATTACATGCCTTTGGCATAATAAGAGAGAAGATAGTGCGCATTTGTACCAGGTGGTGCAATGCATGACTATCCATATCAGATAGAGAGGAGAGAATGAGTCTTGATTGAAAAGGTTTTCAGATAAATAATCCACTGAGAAAGGTGCCCTGTTTACTTTCCTTATTCTTTTTGGGTTTTCTCTTTACTGTGCT
GCCGCGCGCTAAGCAATTTTTAATTGGGATTGCATTGGATTTTTAAGCGCGAGTAGTTCAAAGCGATTCCGTTGATCCCATGGAGAACACGCTCACTTATAAATTGAAATTTACATGGATAATTGAACATTTTTCCAAGTTAAATGCCAGAAAGCATTACTCGAAGATTTTCTCGGTGGAAGGTCATAAATGGCGTGTGT
TAATATATCCCAGAGGGAACAATGTGGACCACCTGTCTATTTACTTAGATGTGGCAGATTCCGCCAGATTACCAAGTGGTTGGAGCAGATATGCTTCGCTCACCTTGGCTGTTGTTAGTCAGACTCGTCAGAAGCTCACAATCAAGCAAGAAACAGAACATATGTTTAATGCCAAAAAGAGTGCTTGGGGTTTCACATTG
TTCATGCCTCTACTTGACGTTCACGACATCACAAAAGGATATCTGTTAGATGATACTCTGATTGTTGAAGCAGAAGTTGGTGCTCAAAGAGTAGTTGATTATGGTGCATATGATGCTAGAGAACATACAGgtttcgttgggctgaagaatcaaggggcaacaagtcacactatttctctgcttcaattattttctttact
tgaaaatttgtgcttatcctatttttcttcttattctacttaaaaaatttaccatactttaaaatttgtgcgtaaactatggttgtttatactttataggtactgattttcaatttttctgtgtgagtagGAGAAAGCAATGAAGCGTCTCCTTCCCAAAGTAGTGAGTTTGTTGGCGGCAATATTGGAGAGCATGTTAT
TTCTGTCGTACATGCACAATATAATGATGAGGGGGGTCTACGAAAGAGGCTTGAGCAACAAAAGAGAGTAGAGGGAGGAGGTGCAGGAGAGGCCCATAATATACATCAGAGTGGGGTCCTAGCAAAGGATTTTAGAGGCGCACCATGCAAGTCAATGACCAAGGAGCAGATATCAATGGTTTTGAGAGACATCACTAGAG
GGTTGGTACCCATTGATCTAGAGGATCCTGGATGGCCCTCTAGTGCTGGAGAGATGTCTCAAACCTTTGCCCCAGTGGTTAGATTAGCTGATGAGTGCAAGGCCTTGAAGGAGGAGGTAGTGAAACAACGTATAAGGGCGACAACCCTAAGTGAATCCATGAAATTATTGGCTCGAGAGGGTGGAGCAAAGCCATAACTT
TTGTATAATTTGGATAGGGAGAGATGTATTTGGATATGCCTTTTGAGACACTTTGAATTTGAAAACTTTTCTTTATACACGCGATATTTTGTGTTGGGTTTCTGAAAAGTAATTTTTTGTTATGCAAAGATCAAGCCAGAAT
Intron 4 GTAAGTAGTG ... GCGCGAGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 73.33 | 2 | 7 | 4 |
| A2 | 69.23 | 2 | 7 | 2 |
| A3 | 57.14 | 3 | 5 | 3 |
| A4 | 100 | 0 | 0 | 1 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 69.23 | 2 | 5 | 4 |
| A7 | 47.37 | 10 | 5 | 13 |
| A8 | 73.33 | 2 | 11 | 0 |
| A9 | 65 | 7 | 24 | 2 |
| A10 | 65.22 | 4 | 7 | 8 |
>TRINITY_DN39859_c2_g7_i2 from sample A9 / Example spliced isoformGGGGATTTGAACCGAGCTTTAAGGCCATTGCTTGGTTATGGAATTTATTCGTCGAAAATTTGAAGAATTAAGAAAATAACAAATTTGAAATGAAAATATTTTGCATTCGTTCAGTGTTGACGGAGTCGAAATGTCGATAGAAAGACCTGGTCACGGGTTCGAATATATTGATGGCCCAAATGAGAAACAATGACCTGGTT
ATAGTTCTGAAACGCATCAAAAGGGAACCCACCATTGCGTTATCGAAGACAACGATTCAGGACACACGGTCCACAATGATTGGTCGATTCGTTGAGCGGAAGAATTGGGAGGCCATGCCTATTATCAACAGTATACAGGGAAGGCCTACATTCCCGACTGAAAACATGGTGAAATACTGTAGGTCCTGCAGGACAGCGGG
TACGAAAAGGCCGGGACGAAGAGCGACGAAGGCAACGGTACAGTTTCAAAGCGATTCCGTTGATCCCATGGAGAACACGCTCACTTATAAATTGAAATTTACATGGACAATTGAACATTTCTCCAAGCTAAATGCCAGAAAGCATTACTCGAAGATTTTCTCGGTGGAAGGTCATAAATGGCGTGTGTTAATATATCCCA
AAGGGAACAAAGTGGACCACTTGTCTATTTATTTAGATGTGGTAGATTCCGCTGCATTACCAAGTGGTTGGAGCAGATATGCTTCGCTCACCTTGGCTGTTGTTAGTCAGACTCGTCAGAAGCTCACAATCAAGCAAGAAACAGAACATATGTTTAATGCCAAAAAGAGTGCTTGGGGTTTCACATTGTTCATGCCTCTA
CTTGACGTTCACGACATCACAAAAGGATATCTGTTAGATGATACTCTGATTGTTGAAGCAGAAGTTGGTGCTCAAAGAGTAGTTGATTATGGTGCATATGATGCTAGAGAACATACAGGAGAAAGCAATGAAGCGTCTCCTTCCCAAAGTAGTGAGTTTGTTGGCGGCAATATTGGAGAGCATGTTATTTCTGTCGTACA
TACACAATATAATGATGAGGGGGGTCTACGAAAGAGGCTTGAGCAACAAAAGAGAGTAGAGGGAGGAGGTGCAGGAGAGGCCCATAATATACATCAGAGTGGGGTCCTAGCAAAGGATTTTAGAGGCGCACCATGCAAGTCAATGACCAAGGAGCAGATATCAATGGTTTTGAGAGACATCACTAGAGGGTTGGTACCCA
TTGATCTAGAGGATCCTGGATGGCCCTCTAGTGCTGGAGAGATGTCTCAAACCTTTGCCCCAGTGGTTAGATTAGCTGATGAGTGCAAGGCCTTGAAGGAGGAGGTAGTGAAACAACGTATAAGGGCGACAACCCTAAGTGAATCCATGAAATTATTGGCTCGAGAGGGTGGAGCAAAGCCATAACTTTTGTATAATTTG
GATAGGGAGAGATGTATTTGGATATGCCTTTTGAGACACTTTGAATTTGAAAACTTTTCTTTATACACGCGATATTTTGTGTTGGGTTTCTGAAAAGTAATTTTTTGTTATGCAAAGATCAAGCCAGA
>TRINITY_DN39859_c2_g7_i1 from sample A9 / Example unspliced isoform:GGGGATTTGAACCGAGCTTTAAGGCCATTGCTTGGTTATGGAATTTATTCGTCGAAAATTTGAAGAATTAAGAAAATAACAAATTTGAAATGAAAATATTTTGCATTCGTTCAGTGTTGACGGAGTCGAAATGTCGATAGAAAGACCTGGTCACGGGTTCGAATATATTGATGGCCCAAATGAGAAACAATGACCTGGTT
ATAGTTCTGAAACGCATCAAAAGGGAACCCACCATTGCGTTATCGAAGACAACGATTCAGGACACACGGTCCACAATGATTGGTCGATTCGTTGAGCGGAAGAATTGGGAGGCCATGCCTATTATCAACAGTATACAGGGAAGGCCTACATTCCCGACTGAAAACATGGTGAAATACTGTAGGTCCTGCAGGACAGCGGG
TACGAAAAGGCCGGGACGAAGAGCGACGAAGGCAACGGTACAGTgtaagtagtgggttctctagcactgggtcatagcaattggtaaaaaatgtgccaagtcaaaaccatttctaaaagcagaattagtctgcaagttttatgaggacgaccaagtattgagtataccctaccctaattacatgcctttggcataataag
agagaagatagtgcgcatttgtaccaggtggtgcaatgcatgactatccatatcagatagagaggagagaatgagtcttgattgaaaaggttttcagataaataatccactgagaaaggtgccctgtttactttccttattctttttgggttttctctgtactgtgctgccgcgcgctaagctatttttaattgggactg
cattggatttttaagcgcgagtagTTCAAAGCGATTCCGTTGATCCCATGGAGAACACGCTCACTTATAAATTGAAATTTACATGGATAATTGAACATTTTTCCAAGTTAAATGCCAGAAAGCATTACTCGAAGATTTTCTCGGTGGAAGGTCATAAATGGCGTGTGTTAATATATCCCAAAGGGAACAAAGTGGACCAC
TTGTCTATTTATTTAGATGTGGTAGATTCCGCTGCATTACCAAGTGGTTGGAGCAGATATGCTTCGCTCACCTTGGCTGTTGTTAGTCAGACTCGTCAGAAGCTCACAATCAAGCAAGAAACAGAACATATGTTTAATGCCAAAAAGAGTGCTTGGGGTTTCACATTGTTCATGCCTCTACTTGACGTTCACGACATCAC
AAAAGGATATCTGTTAGATGATACTCTGATTGTTGAAGCAGAAGTTGGTGCTCAAAGAGTAGTTGATTATGGTGCATATGATGCTAGAGAACATACAGGAGAAAGCAATGAAGCGTCTCCTTCCCAAAGTAGTGAGTTTGTTGGCGGCAATATTGGAGAGCATGTTATTTCTGTCGTACATACACAATATAATGATGAGG
GGGGTCTACGAAAGAGGCTTGAGCAACAAAAGAGAGTAGAGGGAGGAGGTGCAGGAGAGGCCCATAATATACATCAGAGTGGGGTCCTAGCAAAGGATTTTAGAGGCGCACCATGCAAGTCAATGACCAAGGAGCAGATATCAATGGTTTTGAGAGACATCACTAGAGGGTTGGTACCCATTGATCTAGAGGATCCTGGA
TGGCCCTCTAGTGCTGGAGAGATGTCTCAAACCTTTGCCCCAGTGGTTAGATTAGCTGATGAGTGCAAGGCCTTGAAGGAGGAGGTAGTGAAACAACGTATAAGGGCGACAACCCTAAGTGAATCCATGAAATTATTGGCTCGAGAGGGTGGAGCAAAGCCATAACTTTTGTATAATTTGGATAGGGAGAGATGTATTTG
GATATGCCTTTTGAGACACTTTGAATTTGAAAACTTTTCTTTATACACGCGATATTTTGTGTTGGGTTTCTGAAAAGTAATTTTTTGTTATGCAAAGATCAAGCCAGA
Intron 5 GTGCCCTGTT ... GCGCGAGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75 | 1 | 2 | 4 |
| A2 | 0 | 2 | 0 | 0 |
| A3 | 42.86 | 2 | 1 | 2 |
| A4 | 33.33 | 2 | 1 | 1 |
| A5 | 100 | 0 | 1 | 0 |
| A6 | 66.67 | 1 | 0 | 4 |
| A7 | 58.82 | 7 | 10 | 10 |
| A8 | 50 | 1 | 2 | 0 |
| A9 | 0 | 1 | 0 | 0 |
| A10 | 83.33 | 1 | 2 | 8 |
>TRINITY_DN43021_c1_g1_i4 from sample A8 / Example spliced isoformGGAGTCGAAATGTCGAGTGAAAGACCTGGTCACGGGTTCGAATATATTGATGGCCCAAATGAGAAACAATGACCTGGTTATAGTTCTGAAACGCATCAAAAGGGAACCCACCATTGCGTTATCGAAGACAACGATTCAGGACACACGGTCCACAATGATTGGTCGATTCGTTGAGCGGAAGAATTGGGAGGCCATGCCTA
TTATCAACAGTATACAGGGAAGGCCTACATTCCCGACTGAAAACATGGTGAAATACTGTAGGTCCTGCAGGACAGCGGGTACGAAAAGGCCGGGACGAAGAGCGACGAAGGCAACGGTACAGTGTAAGTAGTGGGTTCTCTAGCACTGGGTCATAGCAATTGGTAAAAAATGTGCCAAGTCAAAACCATTTCTAAAAGCA
GAATTAGTCTGCAAGTTTTATGAGGACGACCAAGTATTGAGTATACCCTACCCTAATTACATGCCTTTGGCATAATAAGAGAGAAGATAGTGCGCATTTGTACCAGGTGGTGCAATGCATGACTATCCATATCAGATAGAGAGGAGAGAATGAGTCTTGATTGAAAAGGTTTTCAGATAAATAATCCACTGAGAAAGTTC
AAAGCGATTCCGTTGATCCCATGGAGAACACGCTCACTTATAAATTGAAATTTACATGGACAATTGAACATTTCTCCACGTTGAATGCCGAAGAAAATTCCTCAGAGATTTTCTCGGTGGGAGGTCATAAATGGTAAGAGGGTTTCGGATACCATTTATTTCGATTGACTTGGGCTTGTCTTTACTATTTATGGAGCATG
ATTTGCTCTTGGATTTATGATGTTTCAGGCGTGTGTTAATATATCCCAAAGGGAACAAAGTGGACCACTTGTCTATTTATTTAGATGTGGTAGATTCCGCTGCATTACCAAGTGGTTGGAGCAGATATGCTTCGCTCACCTTGGCTGTTGTTAGTCAGACTCGTCAGAAGCTCACAATCAAGCAAGAAACAGAACATATG
TTTAATGCCAAAAAGAGTGCTTGGGGTTTCACATTGTTCATGCCTCTACTTGACGTTCACGACATCACAAAAGGATATCTGTTAGATGATACTCTGATTGTTGAAGCAGAAGTTGGTGCTCAAAGAGTAGTTGATTATGGTGCATATGATGCTAGAGAACATACAGGTTTCGTTGGGCTGAA
>TRINITY_DN43021_c1_g1_i6 from sample A8 / Example unspliced isoform:GGAGTCGAAATGTCGAGTGAAAGACCTGGTCACGGGTTCGAATATATTGATGGCCCAAATGAGAAACAATGACCTGGTTATAGTTCTGAAACGCATCAAAAGGGAACCCACCATTGCGTTATCGAAGACAACGATTCAGGACACACGGTCCACAATGATTGGTCGATTCGTTGAGCGGAAGAATTGGGAGGCCATGCCTA
TTATCAACAGTATACAGGGAAGGCCTACATTCCCGACTGAAAACATGGTGAAATACTGTAGGTCCTGCAGGACAGCGGGTACGAAAAGGCCGGGACGAAGAGCGACGAAGGCAACGGTACAGTGTAAGTAGTGGGTTCTCTAGCACTGGGTCATAGCAATTGGTAAAAAATGTGCCAAGTCAAAACCATTTCTAAAAGCA
GAATTAGTCTGCAAGTTTTATGAGGACGACCAAGTATTGAGTATACCCTACCCTAATTACATGCCTTTGGCATAATAAGAGAGAAGATAGTGCGCATTTGTACCAGGTGGTGCAATGCATGACTATCCATATCAGATAGAGAGGAGAGAATGAGTCTTGATTGAAAAGGTTTTCAGATAAATAATCCACTGAGAAAGgtg
ccctgtttactttccttattctttttgggttttctctttactgtgctgccgcgcgctaagcaatttttaattgggattgcattggatttttaagcgcgagtagTTCAAAGCGATTCCGTTGATCCCATGGAGAACACGCTCACTTATAAATTGAAATTTACATGGACAATTGAACATTTCTCCACGTTGAATGCCGAAGA
AAATTCCTCAGAGATTTTCTCGGTGGGAGGTCATAAATGGTAAGAGGGTTTCGGATACCATTTATTTCGATTGACTTGGGCTTGTCTTTACTATTTATGGAGCATGATTTGCTCTTGGATTTATGATGTTTCAGGCGTGTGTTAATATATCCCAAAGGGAACAAAGTGGACCACTTGTCTATTTATTTAGATGTGGTAGA
TTCCGCTGCATTACCAAGTGGTTGGAGCAGATATGCTTCGCTCACCTTGGCTGTTGTTAGTCAGACTCGTCAGAAGCTCACAATCAAGCAAGAAACAGAACATATGTTTAATGCCAAAAAGAGTGCTTGGGGTTTCACATTGTTCATGCCTCTACTTGACGTTCACGACATCACAAAAGGATATCTGTTAGATGATACTC
TGATTGTTGAAGCAGAAGTTGGTGCTCAAAGAGTAGTTGATTATGGTGCATATGATGCTAGAGAACATACAGGTTTCGTTGGGCTGAAGAATCAAGGGGCAACAAGTCACACTATTTCTCTGCTTCAATTATTTTCTTTACTTGAAAATTTGTGCTTATCCTATTTTTCTTCTTATTCTACTTAAAAAATTTACCATACT
TTAAAATTTGTGCGTAAACTATGGTTGTTTATACTTTATAGGTACTGATTTTCAATTTTTCTGTGTGAGTAGGAGAAAGCAATGAAGCGTCTCCTTCCCAAAGTAGTGAGTTTGTTGGCGGCAATATTGGAGAGCATGTTATTTCTGTCGTACATGCACAATATAATGATGAGGGGGGTCTACGAAAGAGGCTTGAGCAA
CAAAAGAGAGTAGAGGGAGGAGGTGCAGGAGAGGCCCATAATATACATCAGAGTGGGGTCCTAGCAAAGGATTTTAGAGGCGCACCATGCAAGTCAATGACCAAGGAGCAGATATCAATGGTTTTGAGAGACATCACTAGAGGGTTGGTACCCATTGATCTAGAGGATCCTGGATGGCCCTCTAGTGCTGGAGAGATGTC
TCAAACCTTTGCCCCAGTGGTTAGATTAGCTGATGAGTGCAAGGCCTTGAAGGAGGAGGTAGTGAAACAACGTATAAGGGCGACAACCCTAAGTGAATCCATGAAATTATTGGCTCGAGAGGGTGGAGCAAAGCCATAACTTTTGTATAATTTGGATAGGGAGAGATGTATTTGGATATGCCTTTTGAGACACTTTGAAT
TTGAAAACTTTTCTTTATACACGCGATATTTTGTGTTGGG