NA ----> NA
Intron 1 GTACATGGAC ... GAAATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.32 | 59 | 23 | 83 |
| A2 | 54.05 | 51 | 30 | 90 |
| A3 | 57.72 | 52 | 42 | 100 |
| A4 | 46.23 | 57 | 22 | 76 |
| A5 | 49.23 | 33 | 14 | 50 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 47.37 | 20 | 7 | 29 |
| A8 | 50 | 9 | 9 | 9 |
| A9 | 49.43 | 22 | 9 | 34 |
| A10 | 55.56 | 18 | 17 | 28 |
>TRINITY_DN132318_c0_g2_i11 from sample A1 / Example spliced isoformCAATAGTGCCCCATTCTTATGAAGTGTGCTTCCGATGCGAGGCCTTTTCAATAGTGCCCCATTCTTATGAAGTGTGCTTCCGATGCGAGGCCTTTTCAATAGTGCCCCATTCTTATGAACTGTTCTTCTGATGCGAGTTGATGTATGTCGATTTGTATCAATTTTTCTCCTCGAATGCCAGCGTGCCAGAGTGTGCATGC
TTTAATAAAGCAGGGAATTAGCTGCGTTGGAGCTTTTCCTCTTCTTGCATTTTCATATGAAAGGAATGGCTTATCCTAACATGTGAGCATTGAAGGGTTTAGGGTTCAATATATCATAGCCGTTCAAAGTGGAATAGGATCCTACACTTCAAATTTGATCCCTGCGTCCAAACCCAAATTTAGGCAGGGTCTTTTCAATT
TTGCAAGGAATTTTTGGTCTGGACGAACCGAAAGCCTCCTCGGCTCTATATCCTGAAAGAGAGGACTTAATCTTTCTTTTGTCTATGGTTATCTTGTCGTGGGAGCTTACCAATAGTTAAATCATTCTTTCATTTTATATTGTCTAACAACGTAGCTGCTACGTCTCTATAGTAGCTTTTAATATATTATATGTACTGCG
GAGGTGGGAGGTCTCCCTAACGAAGCCACGTTGACACCCAGTGGTTTTTACTGGTTTTGATTCCTAGTCAGTATGGATTATGAAAGGCCGCTTTGAAGCAGCAGAATAATTCCGCAGGTAGGCAGAGGCAGGGTAAAGAGGAAAGATTGAATTGCAGTGCCAGAGCCAGAAATTTAGACTGTATCGACTGCAACTGAAAG
GTAGACTCTATCTGCTGCAACTGGAAGCACTGCAAACTTGTGTGGTAAACAGGAATTGTCTTTCGAAGGCTGTGCAACATAATAGAAACGGAGGCACAGGTAGAGGTAAAGATAGGTAGAGTTGAGAATGCACCGCCTCAGAAATGTGCATTGAAGGGATGCTATGGGAGCAGGTGCAGCATTGAAGTGAGTACCAGATT
CTCATTGAAGTCGTAGGTGCAACATTGAAGTTGACTAACTCTTTTCAATCGTCGGACAGGGAATCAGACGGCCTTAATTAAACAAAAGGGGAAATCAGGGGAGTCGCTTCCCATTTGTGAAACGCCTTACGGCGTAATTATAGATGATGCATATGTTGGGGTTTCGAACCCCCACGGCCTCGGGTAAGCAGAAAGAATCT
GATCTTTCTCCTGCAAGTACTCCTACGGTCGCGGCTTCAACTGGCTCGGCCAGGCCGCTAAGACTGGTCTACTACGATGAGAAAGGCAAGTTTAGAATGGACCCCGAGGCTGTCGCCACTCTGCAGCTTGTCAAAGGGCCTCTCGGCGTCGTTTCCGTCTGCGGCCGGGCGCGTCAAGGGAAGAGCTTCATTTTAAATCA
GCTACTTGGAAGGAGCAGTGGCTTCCAGGTTGAATCTACACATCGACCATGTACAAAGGGCCTTTGGATGTGGAGTGCTCCACTGAAGAGGACTGCTCTAGATGGAACTGAGTACAATCTCTTACTTCTTGACAGCGAAGGCATCGATGCATATGATCAAACTGGCACATACAGTACACAGATATTTTCATTGGCAGTCC
TTTTGTCAAGCATGTTTGTGTATAATCAGATGGGAGGGATTGATGAAGCTGCTCTGGATCGTTTATCTCTTGTTACCGAGATGACAAAACATATTCGAGTTAGAGCTTCAAAGGGTCGAACCACAGCAGCAGATATTGGGCAGTTTGCTCCACATTTTGTGTGGCTTTTGCGCGATTTTTATTTGAACCTGGCAGAAGAT
GGTAGGATGATTACCCCACGAGAGTATTTGGAACTAGCCCTGAAACCGATGCCTGGCTCTGGAAAAGATATTGCGGCGAAGAATGAGATTCGTGATTCTATTCGAGCTCTCTTTCCTGAACGGGACTGCTTCACTCTAGTACGCCCATTGAATAACGAGAAAGATCTGCAGCGACTGGATCAGATTGCTATGGAGAAACT
GCGCCCCGAATTTCGAGCTGGTCTGGATGCATTAACAAAGTTTGTTCTTGAAAGAACAAGGCCGAAGCAAGTTGGAGCAACAGTCATGACTGGCCCTATATTTGCAGGGCTTACACAATCGTTCTTGGATGCTCTTAATGCAGGAGCTGTGCCAACAATTGCAACTTCCTGGCAGAGTGTGGAGGAAGCTGAGTGTAGGA
GAGCTTATGATTCTGCCATTGAAGCATACACGGGGGCCTTTGACCGATCAAAACCACCTGATGAGGTTGCTTTGCAAGAAACACATGAGTCTGCATTACAAAAGGCTTTAGCTGTTTTTAACAGTAGTGCAGTGGGAGCTGGTGCTGCAAGGCAGAAGTATGAGAAGATGGTTCAAAATACCTTGAAAAAACAATTTGAG
GAGTTTAAGCGAAATGCATTCAGGGAGGCTGAGCTGAAATGCACAAGTATTCTTCAAAATATGGACAAGAAGTTACGTTCTGCTTGCTATGCATCTGATGCAAAACTTGATCGAGTGCTACAGGTTTTAGGTGACCTTGTGTCAGAGTATGAATCAACATCTTCTGGCCCTTACAAATGGAATAAACTTGCCAACTTTTT
ACAGCAAAGTTTGGAAGGCCCTATATTTGACCTCACGAAGAGACTTGGGGATCAGAGTTCATCTGAAAGGGCTGCTCTTCAGTTAAAATGCCGTTCAGTTGAGGATAAGTTAGCATTGATGGGAAAGCAGCTGGAGATTAGTCAAAAGCATGGTGGTGATTATCTGAAAAGATACGAGGATGCGATTTCAGATAAAAAGA
AGATTTCTGATGAATACGCAGCTCGATTGGCTAATATGCAAAGCAAGTACAGCTCATTAGAAGAAAAACATGCTAATGTGTGTGAAGTTTTGGAATCAGTCAGGAAGGAAGCTTCTGGATTGAAGAAGAAGTATGACCAATCTATTGTCAAGCAAAAGATTGAAAAAGAGCAGATTGATGCAGAAATGGCCTCACTAAAA
AGTAGGTGTAGTTCTGCTGAAGCAAGGCTGAGTGCTGCTCGTGAACAAGTTGAATCGGCCAAGGAAGAGGCACTTGAGTGGAGGCGAAAGCATGATCTGGCGGTGAAGGAATCTCAAA
>TRINITY_DN132318_c0_g2_i8 from sample A1 / Example unspliced isoform:CAATAGTGCCCCATTCTTATGAAGTGTGCTTCCGATGCGAGGCCTTTTCAATAGTGCCCCATTCTTATGAAGTGTGCTTCCGATGCGAGGCCTTTTCAATAGTGCCCCATTCTTATGAACTGTTCTTCTGATGCGAGTTGATGTATGTCGATTTGTATCAATTTTTCTCCTCGAATGCCAGCGTGCCAGAGTGTGCATGC
TTTAATAAAGCAGGGAATTAGCTGCGTTGGAGCTTTTCCTCTTCTTGCATTTTCATATGAAAGGAATGGCTTATCCTAACATGTGAGCATTGAAGGGTTTAGGGTTCAATATATCATAGCCGTTCAAAGTGGAATAGGATCCTACACTTCAAATTTGATCCCTGCGTCCAAACCCAAATTTAGGCAGGGTCTTTTCAATT
TTGCAAGGAATTTTTGGTCTGGACGAACCGAAAGCCTCCTCGGCTCTATATCCTGAAAGAGAGGACTTAATCTTTCTTTTGTCTATGGTTATCTTGTCGTGGGAGCTTACCAATAGTTAAATCATTCTTTCATTTTATATTGTCTAACAACGTAGCTGCTACGTCTCTATAGTAGCTTTTAATATATTATATGTACTGCG
GAGGTGGGAGGTCTCCCTAACGAAGCCACGTTGACACCCAGTGGTTTTTACTGGTTTTGATTCCTAGTCAGTATGGATTATGAAAGGCCGCTTTGAAGCAGCAGAATAATTCCGCAGGTAGGCAGAGGCAGGGTAAAGAGGAAAGgtacatggactaactcgtgggcagagatagaagatgtttttttctggttgtttca
tataatctacaagaattctgttgtatcaaagactgaaggatgaaaataaatccacctgacattgaaacatgcctggaaattgcagATTGAATTGCAGTGCCAGAGCCAGAAATTTAGACTGTATCGACTGCAACTGAAAGGTAGACTCTATCTGCTGCAACTGGAAGCACTGCAAACTTGTGTGGTAAACAGGAATTGTC
TTTCGAAGGCTGTGCAACATAATAGAAACGGAGGCACAGGTAGAGGTAAAGATAGGTAGAGTTGAGAATGCACCGCCTCAGAAATGTGCATTGAAGGGATGCTATGGGAGCAGGTGCAGCATTGAAGTGAGTACCAGATTCTCATTGAAGTCGTAGGTGCAACATTGAAGTTGACTAACTCTTTTCAATCGTCGGACAGG
GAATCAGACGGCCTTAATTAAACAAAAGGGGAAATCAGGGGAGTCGCTTCCCATTTGTGAAACGCCTTACGGCGTAATTATAGATGATGCATATGTTGGGGTTTCGAACCCCCACGGCCTCGGGTAAGCAGAAAGAATCTGATCTTTCTCCTGCAAGTACTCCTACGGTCGCGGCTTCAACTGGCTCGGCCAGGCCGCTA
AGACTGGTCTACTACGATGAGAAAGGCAAGTTTAGAATGGACCCCGAGGCTGTCGCCACTCTGCAGCTTGTCAAAGGGCCTCTCGGCGTCGTTTCCGTCTGCGGCCGGGCGCGTCAAGGGAAGAGCTTCATTTTAAATCAGCTACTTGGAAGGAGCAGTGGCTTCCAGGTTGAATCTACACATCGACCATGTACAAAGGG
CCTTTGGATGTGGAGTGCTCCACTGAAGAGGACTGCTCTAGATGGAACTGAGTACAATCTCTTACTTCTTGACAGCGAAGGCATCGATGCATATGATCAAACTGGCACATACAGTACACAGATATTTTCATTGGCAGTCCTTTTGTCAAGCATGTTTGTGTATAATCAGATGGGAGGGATTGATGAAGCTGCTCTGGATC
GTTTATCTCTTGTTACCGAGATGACAAAACATATTCGAGTTAGAGCTTCAAAGGGTCGAACCACAGCAGCAGATATTGGGCAGTTTGCTCCACATTTTGTGTGGCTTTTGCGCGATTTTTATTTGAACCTGGCAGAAGATGGTAGGATGATTACCCCACGAGAGTATTTGGAACTAGCCCTGAAACCGATGCCTGGCTCT
GGAAAAGATATTGCGGCGAAGAATGAGATTCGTGATTCTATTCGAGCTCTCTTTCCTGAACGGGACTGCTTCACTCTAGTACGCCCATTGAATAACGAGAAAGATCTGCAGCGACTGGATCAGATTGCTATGGAGAAACTGCGCCCCGAATTTCGAGCTGGTCTGGATGCATTAACAAAGTTTGTTCTTGAAAGAACAAG
GCCGAAGCAAGTTGGAGCAACAGTCATGACTGGCCCTATATTTGCAGGGCTTACACAATCGTTCTTGGATGCTCTTAATGCAGGAGCTGTGCCAACAATTGCAACTTCCTGGCAGAGTGTGGAGGAAGCTGAGTGTAGGAGAGCTTATGATTCTGCCATTGAAGCATACACAGGGGCCTTCGACCAATCAAAACCAGCTG
ATGAGGTTGCTTTGCAAGAAGCGCATGAGTCTGCGTTACAAAAGGCTTTAGCTGTTTTTAACAGTAGTGCAGTGGGAGCTGGTACTGCAATGCAGAAGTATGAGAAAATGGTTCAAACTACCTTGAAAAAACAATTTGAGGAGTTTAAGCGAAATGCATTCAGGGAGGCTGAGCTGAAATGCACAAGTATTCTTCAAAAT
ATGGACAAGAAGTTGCGTTCTGCTTGCTATGCATTTGATGCAAAACTTGATCAAGTGCTACAGAGTATGAGTCGGAATCTTCTGGCCCTTACAAATGGAATAAACTTGCCAACTTTTTACAGCAAAGTTTGGAAGGCCCTATATTTGACCTCACGAAGAGACTTGGGGATCAGAGTTCATCTGAAAGGGCTGCTCTTCAG
TTAAAATGCCGTTCAGTTGAGGATAAGTTAGCATTGATGGGAAAGCAGCTGGAGATTAGTCAAAAGCATGGTGGTGATTATCTGAAAAGATACGAGGATGCGATTTCAGATAAAAAGAAGATTTCTGATGAATACGCAGCTCGATTGGCTAATATGCAAAGCAAGTACAGCTCATTAGAAGAAAAACATGCTAATGTGTG
TGAAGTTTTGGAATCAGTCAGGAAGGAAGCTTCTGGATTGAAGAAGAAGTATGACCAATCTATTGTCAAGCAAAAGATTGAAAAAGAGCAGATTGATGCAGAAATGGCCTCACTAAAAAGTAGGTGTAGTTCTGCTGAAGCAAGGCTGAGTGCTGCTCGTGAACAAGTTGAATCGGCCAAGGAAGAGGCACTTGAGTGGA
GGCGAAAGCATGATCTGGCGGTGAAGGAATCTCAAA
Intron 2 GTTAGCACAA ... GTCATGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.32 | 195 | 54 | 3 |
| A2 | 25.02 | 132 | 43 | 1 |
| A3 | 22.64 | 157.6 | 44 | 0 |
| A4 | 20.64 | 128.6 | 31 | 0 |
| A5 | 17.63 | 63.6 | 13 | 0 |
| A6 | 17.78 | 9.4 | 2 | 0 |
| A7 | 27.57 | 81.2 | 30 | 0 |
| A8 | 13.61 | 47.8 | 7 | 0 |
| A9 | 26.24 | 91.8 | 32 | 0 |
| A10 | 26.16 | 109.8 | 38 | 0 |
>TRINITY_DN132318_c0_g2_i7 from sample A1 / Example spliced isoformCTTTGAAACCCTTGTTGCTGCAATTAATATTTTTTTTGCTCTGCCCTCCTCACCTTTAGGGAAACTCCGTGCCATGCATTCAATTTCATCTAATCCCAGCAACTGAAATACGTTGCTACCGCTAAACCTTTTATATTCACACCATTCTCAACCGGTCTCTCGTTCGAATCCCGACGACCCAAGCGGAGCAGGTGCGCCTC
AACCTCTGTGTTCTCTGCAGCAAAGATGATGCATATGTTGGGGTTTCGAACCCCCGCGGCGTCGGGTAAGCAGAAAGAATCCGATCTTTCTCCTGCAAGTCCTTCGACTCCTACGTTCGCGGCTTCAACTGGCCCGGCCAGGCCGCTAAGACTGGTCTACTGCGATGAGAAGGGCAAGTTTAGAATGGACCCCGAGGCTG
TCGCCACTCTGCAGCTTGTCAAAGGGCCTCTCGGCGTCGTTTCCGTCTGCGGCCGGGCGCGTCAAGGGAAGAGCTTCATTTTAAATCAGCTACTTGGAAGGAGCAGTGGCTTCCAGGTTGCATCTACGCATCGACCATGTACGAAGGGCCTTTGGATGTGGAGTGCTCCACTGAAGAGGACTGCTCTAGATGGAACTGAG
TACAATCTCTTACTTCTTGACAGCGAAGGCATCGATGCATATGATCAAACTGGCACATACAGTACACAGATATTTTCATTGGCAGTCCTTTTGTCAAGCATGTTTGTGTATAATCAGATGGGAGGGATTGATGAAGCTGCTCTGGATCGTTTATCTCTTGTTACCGAGATGACAAAACATATTCGAGTTAGAGCTTCAAA
GGGTCGAACCACAGCAGCAGATATTGGGCAGTTTGCTCCACATTTTGTGTGGCTTTTGCGCGATTTTTATTTGAACCTGGCAGAAGATGGTAGGATGATTACCCCACGAGAGTATTTGGAACTAGCCCTGAAACCGATGCCTGGCTCTGGAAAAGATATTGCGGCGAAGAATGAGATTCGTGATTCTATTCGAGCTCTCT
TTCCTGAACGGGACTGCTTCACTCTAGTACGCCCATTGAATAACGAGAAAGATCTGCAGCGACTGGATCAGATTGCTATGGAGAAACTGCGCCCCGAATTTCGAGCTGGTCTGGATGCATTAACAAAGTTTGTTCTTGAAAGAACAAGGCCGAAGCAAGTTGGAGCAACAGTCATGACTGGCCCTATATTTGCAGGGCTT
ACACAATCATTCTTGGATGCTCTTAATGCAGGAGCTGTGCCAACAATTGCAACTTCCTGGCAGAGTGTGGAGGAAGCTGAGTGTAGGAGAGCTTATGATTCTGCCATTGAAGCATACAC
>TRINITY_DN132318_c0_g2_i14 from sample A1 / Example unspliced isoform:CTTTGAAACCCTTGTTGCTGCAATTAATATTTTTTTTGCTCTGCCCTCCTCACCTTTAGGGAAACTCCGTGCCATGCATTCAATTTCATCTAATCCCAGCAACTGAAATACGTTGCTACCGCTAAACCTTTTATATTCACACCATTCTCAACCGGTCTCTCGTTCGAATCCCGACGACCCAAGCGGAGCAGGTGCGCCTC
AACCTCTGTGTTCTCTGCAGCAAAGATGATGCATATGTTGGGGTTTCGAACCCCCGCGGCGTCGGGTAAGCAGAAAGAATCCGATCTTTCTCCTGCAAGTCCTTCGACTCCTACGTTCGCGGCTTCAACTGGCCCGGCCAGGCCGCTAAGACTGGTCTACTGCGATGAGAAGGGCAAGTTTAGAATGGACCCCGAGGCTG
TCGCCACTCTGCAGCTTGTCAAAGGGCCTCTCGGCGTCGTTTCCGTCTGCGGCCGGGCGCGTCAAGGGAAGAGCTTCATTTTAAATCAGCTACTTGGAAGGAGCAGTGGCTTCCAGGTTGCATCTACGCATCGACCATGTACGAAGGGCCTTTGGATGTGGAGTGCTCCACTGAAGAGGACTGCTCTAGATGGAACTGAG
TACAATCTCTTACTTCTTGACAGCGAAGGCATCGATGCATATGATCAAACTGGCACATACAGTACACAGATATTTTCATTGGCAGTCCTTTTGTCAAGCATGTTTGTGTATAATCAGATGGGAGGGATTGATGAAGCTGCTCTGGATCGTTTATCTCTTGTTACCGAGATGACAAAACATATTCGAGTTAGAGCTTCAAA
GGGTCGAACCACAGCAGCAGATATTGGGCAGTTTGCTCCACATTTTGTGTGGCTTTTGCGCGATTTTTATTTGAACCTGGCAGAAGATGGTAGGATGATTACCCCACGAGAGTATTTGGAACTAGCCCTGAAACCGATGCCTGGCTCTGGAAAAGATATTGCGGCGAAGAATGAGATTCGTGATTCTATTCGAGCTCTCT
TTCCTGAACGGGACTGCTTCACTCTAGTACGCCCATTGAATAACGAGAAAGATCTGCAGCGACTGGATCAGATTGCTATGGAGAAACTGCGCCCCGAATTTCGAGCTGGTCTGGATGCATTAACAAAGTTTGTTCTTGAAAGAACAAGGCCGAAGCAAGTTGGAGCAACAGTCATGACTGGCCCTATATTTGCAGGGCTT
ACACAATCATTCTTGGATGCTCTTAATGCAGGAGCTGTGCCAACAATTGCAACTTCCTGGCAGgttagcacaacaccttattttcatgttctggttgctgtttcatttggtgctttctgtataaatactagtcagaatgcatgttcttacagatacaggtcagaaggcatgttctgagattggtacttctttggatcttt
tgaaatgtcaaaagctgagttacatgaagactcatgcaaacgtgtcttgttgcttgtatgatcaagaagtataggagacacattaaaggcttgtatttattgtctgtttgagaggcaaaatatttgttatacctatttttttatggataaatttggccccgctaaacttaagaatatgtataatatatattagtaaggga
aaatctaattgtaattgatgcttgctagagtggtctatgcatatgattttaaactcgccaagattgcctccattcatttgcatcatttgttttctaggcttaattatgtatataacctgaaacaatacagtgagtatctacagtcaacatttgttttttggttcaacgaacaatttgtattgtctttctcggctccttcc
attttacataagaggaaagtaataaaacatgccagattcattagtatagataactgagactttcctagtataaagcatgtgataaattttgtgttttctttttaaaaaaaacatatccacaaatcatattatacagtttgagtgattatttaagtcatggcagAGTGTGGAGGAAGCTGA
Intron 3 GTGAGTGAGA ... TTTGTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.82 | 309 | 102 | 16 |
| A2 | 30.18 | 266 | 115 | 10 |
| A3 | 25.47 | 319 | 109 | 5 |
| A4 | 24.27 | 181 | 58 | 6 |
| A5 | 30.21 | 134 | 58 | 3 |
| A6 | 15.38 | 11 | 2 | 0 |
| A7 | 31.07 | 142 | 64 | 0 |
| A8 | 24.51 | 77 | 25 | 3 |
| A9 | 24.14 | 132 | 42 | 2 |
| A10 | 26.64 | 179 | 65 | 2 |
>TRINITY_DN132318_c0_g2_i2 from sample A1 / Example spliced isoformAAGGGCCTTTGGATGTGGAGTGCTCCACTGAAGAGGACTGCTCTAGATGGAACTGAGTACAATCTCTTACTTCTTGACAGCGAAGGCATCGATGCATATGATCAAACTGGCACATACAGTACACAGATATTTTCATTGGCAGTCCTTTTGTCAAGCATGTTTGTGTATAATCAGATGGGAGGGATTGATGAAGCTGCTCT
GGATCGTTTATCTCTTGTTACCGAGATGACAAAACATATTCGAGTTAGAGCTTCAAAGGGTCGAACCACAGCAGCAGATATTGGGCAGTTCTCTCCACACTTTGTGTGGCTTTTGCGTGATTTTTATTTGAACCTGGCAGAAGATGGTAGGATGATTACCCCACGAGAGTATTTGGAACTAGCCCTGAAACCGATGCCTG
GCGCTGGAAAGGATATTGCAGCGAAGAATGAGATTCGTGATTCTATTCGAGCTCTCTTTCCTGAACGGGACTGCTTCCCTCTAGTACGCCCGTTAAATAATGAGAAAGATCTGCAGCGACTGGATCAGATTGCTATGGAGAAACTGCGCCCCGAATTTCGAGCTGGTCTGGATGCATTAACAAAGTTTGTTCTTGAAAGA
ACAAGGCCGAAGCAAGTTGGAGCAACAGTCATGACTGGACCTATACTTGCAGGGCTTACTCAATCGTTCTTGGATGCTCTTAATGCAGGAGCTGTGCCAACAATTGCAACTTCCTGGCAGAGTGTGGAGGAAGCTGAGTGTAGGAGAGCTTATGATTCTGCCATTGAAGCATACAC
>TRINITY_DN132318_c0_g2_i17 from sample A1 / Example unspliced isoform:AAGGGCCTTTGGATGTGGAGTGCTCCACTGAAGAGGACTGCTCTAGATGGAACTGAGTACAATCTCTTACTTCTTGACAGCGAAGGCATCGATGCATATGATCAAACTGGCACATACAGTACACAGATATTTTCATTGGCAGTCCTTTTGTCAAGCATGTTTGTGTATAATCAGATGGGAGGGATTGATGAAGCTGCTCT
GGATCGTTTATCTCTTGTTACCGAGATGACAAAACATATTCGAGTTAGAGCTTCAAAGGGTCGAACCACAGCAGCAGATATTGGGCAGTTCTCTCCACACTTTGTGTGGCTTTTGCGTgtgagtgagatattcttttttttcttaaaattttgggaaaagctttaatttatacagaaactatgttgaaaatttaaaccct
tctaacatgtagtctgactgatgtaatcattctttatgatgacgagtcaccaatataaatacttgtagctatcttatcttgggacctgtactcatattgtactcatattttccttcagcttatattggtttgtcacgaaagcataattcagattattacaagcttgaaagtttagataaaagaaactgtgatttaatcaa
agatgaatgaattggtttaacacaaatgggtttgttttgatggaaaaattacaaggtctatactaattcttatgaagttgtgtttgtaatatacccctttatgccaggtatatttattgttttgagcaacttgattatttgccatgttgattaatgcatttattttcttttccgcacgtacaggttacagagatcaaata
acatataataaagtgctgttctaacatatgtttattcttttggtaattgttaaacatcaacataaagttcttgagattttgtggcagGATTTTTATTTGAACCTGGCAGAAGATGGTAGGATGATTACCCCACGAGAGTATTTGGAACTAGCCCTGAAACCGATGCCTGGCTCTGGAAAAGATATTGCGGCGAAGAATGA
GGTAGTACTCAAGAAACCAAAACATCAAGGTAGCAAAATGGTTATTTTATGTTTGATAATAAGTATGTTACTGTTAAAGCAACAAATGTCAAATGTTCTTAACTCTTCCAATCAAAGGCAAAGCCATTATATGGTGCCTCATTTCAGTTCCCCATTTCAAGCTCTCGTCAAAACTCATAACCATAAAACTGCTTCATTGT
GATCAATAATTGGAGGCTCACTTCGGCATTGTTACTTGTGATTCGCAAGAGGGGGGAGACTTATCCTACATTGATAACAGTAATAAGTTATAATTTGCTTGGTTATTTGAACCTGAAACGTCAGCATAACTTATTCTTTCTCAGAAGAGGAATGGGATCTTTCTGTCGCTTACCTTTTCTGCGAGAAAGGAGGATCTGTT
TGCACGTGGTTACCATACCTGCTCCTCTAAATTCATCCGGATTTGATGAACTTATCCCCCACTTAATAAAAATGAGCAAATTTATATTTCTGCAATCAATAGTAAGTCACTGGCCTTTAGTCCCGAGGGTTAGCTCAAGTGGTCATGAACCAGATGTGAGATCTGTCTCTCTAAAGTTGGGGAGGTCATGGTTTTGACTC
TCTTG
Intron 4 GTATGCCTGC ... TTTATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.74 | 252 | 0 | 70 |
| A2 | 21.6 | 196 | 0 | 54 |
| A3 | 17.39 | 228 | 0 | 48 |
| A4 | 18.57 | 171 | 0 | 39 |
| A5 | 15.79 | 64 | 0 | 12 |
| A6 | 20 | 16 | 0 | 4 |
| A7 | 18.48 | 172 | 0 | 39 |
| A8 | 14.58 | 123 | 2 | 21 |
| A9 | 16.58 | 161 | 0 | 32 |
| A10 | 17.18 | 135 | 0 | 28 |
>TRINITY_DN132318_c0_g2_i13 from sample A1 / Example spliced isoformCAATAGTGCCCCATTCTTATGAAGTGTGCTTCCGATGCGAGGCCTTTTCAATAGTGCCCCATTCTTATGAAGTGTGCTTCCGATGCGAGGCCTTTTCAATAGTGCCCCATTCTTATGAACTGTTCTTCTGATGCGAGTTGATGTATGTCGATTTGTATCAATTTTTCTCCTCGAATGCCAGCGTGCCAGAGTGTGCATGC
TTTAATAAAGCAGGGAATTAGCTGCGTTGGAGCTTTTCCTCTTCTTGCATTTTCATATGAAAGGAATGGCTTATCCTAACATGTGAGCATTGAAGGGTTTAGGGTTCAATATATCATAGCCGTTCAAAGTGGAATAGGATCCTACACTTCAAATTTGATCCCTGCGTCCAAACCCAAATTTAGGCAGGGTCTTTTCAATT
TTGCAAGGAATTTTTGGTCTGGACGAACCGAAAGCCTCCTCGGCTCTATATCCTGAAAGAGAGGACTTAATCTTTCTTTTGTCTATGGTTATCTTGTCGTGGGAGCTTACCAATAGTTAAATCATTCTTTCATTTTATATTGTCTAACAACGTAGCTGCTACGTCTCTATAGTAGCTTTTAATATATTATATGTACTGCG
GAGGTGGGAGGTCTCCCTAACGAAGCCACGTTGACACCCAGTGGTTTTTACTGGTTTTGATTCCTAGTCAGTATGGATTATGAAAGGCCGCTTTGAAGCAGCAGAATAATTCCGCAGGTAGGCAGAGGCAGGGTAAAGAGGAAAGGTACATGGACTAACTCGTGGGCAGAGATAGAAGATGTTTTTTTCTGGTTGTTTCA
TATAATCTACAAGAATTCTGTTGTATCAAAGACTGAAGGATGAAAATAAATCCACCTGACATTGAAACATGCCTGGAAATTGCAGATTGAATTGCAGTGCCAGAGCCAGAAATTTAGACTGTATCGACTGCAACTGAAAGGTAGACTCTATCTGCTGCAACTGGAAGCACTGCAAACTTGTGTGGTAAACAGGAATTGTC
TTTCGAAGGCTGTGCAACATAATAGAAACGGAGGCACAGGTAGAGGTAAAGATAGGTAGAGTTGAGAATGCACCGCCTCAGAAATGTGCATTGAAGGGATGCTATGGGAGCAGGTGCAGCATTGAAGTGAGTACCAGATTCTCATTGAAGTCGTAGGTGCAACATTGAAGTTGACTAACTCTTTTCAATCGTCGGACAGG
GAATCAGACGGCCTTAATTAAACAAAAGGGGAAATCAGGGGAGTCGCTTCCCATTTGTGAAACGCCTTACGGCGTAATTATAGATGATGCATATGTTGGGGTTTCGAACCCCCACGGCCTCGGGTAAGCAGAAAGAATCTGATCTTTCTCCTGCAAGTACTCCTACGGTCGCGGCTTCAACTGGCTCGGCCAGGCCGCTA
AGACTGGTCTACTACGATGAGAAAGGCAAGTTTAGAATGGACCCCGAGGCTGTCGCCACTCTGCAGCTTGTCAAAGGGCCTCTCGGCGTCGTTTCCGTCTGCGGCCGGGCGCGTCAAGGGAAGAGCTTCATTTTAAATCAGCTACTTGGAAGGAGCAGTGGCTTCCAGGTTGAATCTACACATCGACCATGTACAAAGGG
CCTTTGGATGTGGAGTGCTCCACTGAAGAGGACTGCTCTAGATGGAACTGAGTACAATCTCTTACTTCTTGACAGCGAAGGCATCGATGCATATGATCAAACTGGCACATACAGTACACAGATATTTTCATTGGCAGTCCTTTTGTCAAGCATGTTTGTGTATAATCAGATGGGAGGGATTGATGAAGCTGCTCTGGATC
GTTTATCTCTTGTTACCGAGATGACAAAACATATTCGAGTTAGAGCTTCAAAGGGTCGAACCACAGCAGCAGATATTGGGCAGTTTGCTCCACATTTTGTGTGGCTTTTGCGCGATTTTTATTTGAACCTGGCAGAAGATGGTAGGATGATTACCCCACGAGAGTATTTGGAACTAGCCCTGAAACCGATGCCTGGCTCT
GGAAAAGATATTGCGGCGAAGAATGAGATTCGTGATTCTATTCGAGCTCTCTTTCCTGAACGGGACTGCTTCACTCTAGTACGCCCATTGAATAACGAGAAAGATCTGCAGCGACTGGATCAGATTGCTATGGAGAAACTGCGCCCCGAATTTCGAGCTGGTCTGGATGCATTAACAAAGTTTGTTCTTGAAAGAACAAG
GCCGAAGCAAGTTGGAGCAACAGTCATGACTGGCCCTATATTTGCAGGGCTTACACAATCGTTCTTGGATGCTCTTAATGCAGGAGCTGTGCCAACAATTGCAACTTCCTGGCAGAGTGTGGAGGAAGCTGAGTGTAGGAGAGCTTATGATTCTGCCATTGAAGCATACACGGGGGCCTTTGACCGATCAAAACCACCTG
ATGAGGTTGCTTTGCAAGAAACACATGAGTCTGCATTACAAAAGGCTTTAGCTGTTTTTAACAGTAGTGCAGTGGGAGCTGGTGCTGCAAGGCAGAAGTATGAGAAGATGGTTCAAAATACCTTGAAAAAACAATTTGAGGAGTTTAAGCGAAATGCATTCAGGGAGGCTGAGCTGAAATGCACAAGTATTCTTCAAAAT
ATGGACAAGAAGTTACGTTCTGCTTGCTATGCATCTGATGCAAAACTTGATCGAGTGCTACAGGTTTTAGGTGACCTTGTGTCAGAGTATGAATCAACATCTTCTGGCCCTTACAAATGGAATAAACTTGCCAACTTTTTACAGCAAAGTTTGGAAGGCCCTATATTTGACCTCACGAAGAGACTTGGGGATCAGAGTTC
ATCTGAAAGGGCTGCTCTTCAGTTAAAATGCCGTTCAGTTGAGGATAAGTTAGCATTGATGGGAAAGCAGCTGGAGATTAGTCAAAAGCATGGTGGTGATTATCTGAAAAGATACGAGGATGCGATTTCAGATAAAAAGAAGATTTCTGATGAATACGCAGCTCGATTGGCTAATATGCAAAGCAAGTACAGCTCATTAG
AAGAAAAACATGCTAATGTGTGTGAAGTTTTGGAATCAGTCAGGAAGGAAGCTTCTGGATTGAAGAAGAAGTATGACCAATCTATTGTCAAGCAAAAGATTGAAAAAGAGCAGATTGATGCAGAAATGGCCTCACTAAAAAGTAGGTGTAGTTCTGCTGAAGCAAGGCTGAGTGCTGCTCGTGAACAAGTTGAATCGGCC
AAGGAAGAGGCACTTGAGTGGAGGCGAAAGCATGATCTGGCGGTGAAGGAATCTCAAA
>TRINITY_DN132318_c0_g2_i16 from sample A1 / Example unspliced isoform:AAACTTGATCGAGTGCTACAGgtatgcctgctatgcttattgacgttataatcggtactgccatagtggtttgattgctgtaatttatgaatatgagcagtgtattgctgattgttttgaattgtcggtttttatgcttttaagtagggggaaattgagaataataaccgtggtatgtgtaccagctaaaaaatattgat
ttttatttcagGTTTTAGGTGACCTTGTGTCAGAGTATGAATCAACATCTTCTGGCCCTTACAAATGGAATAAACTTGCCAACTTTTTACAGCAAAGTTTGGAAGGCCCTATATTTGACCTCACGAAGAGACTTGGGGATCAGAGTTCATCTGAAAGGGCTGCTCTTCAGTTAAAATGCCGTTCAGTTGAGGATAAGTTA
GCATTGATGGGAAAGCAGCTGGAGATTAGTCAAAAGCATGGTGGTGATTATCTGAAAAGATACGAGGATGCGATTTCAGATAAAAAGAAGATTTCTGATGAATACGCAGCTCGATTGGCTAATATGCAAAGCAAGTACAGCTCATTAGAAGAAAAACATGCTAATGTGTGTGAAGTTTTGGAATCAGTCAGGAAGGAAGC
TTCTGGATTGAAGAAGAAGTATGACCAATCTATTGTCAAGCAAAAGATTGAAAAAGAGCAGATTGATGCAGAAATGGCCTCACTAAAAAGTAGGTGTAGTTCTGCTGAAGCAAGGCTGAGTGCTGCTCGTGAACAAGTTGAATCGGCCAAGGAAGAGGCACTTGAGTGGAGGCGAAAGCATGATCTGGCGGTGAAGGAAT
CTCAAA
Intron 5 GTTATATACA ... GATTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.57 | 225 | 46 | 37 |
| A2 | 15.06 | 141 | 27 | 23 |
| A3 | 11.63 | 209 | 29 | 26 |
| A4 | 15.28 | 194 | 41 | 29 |
| A5 | 9.84 | 87 | 11 | 8 |
| A6 | 13.04 | 10 | 2 | 1 |
| A7 | 7.84 | 147 | 11 | 14 |
| A8 | 11.46 | 85 | 15 | 7 |
| A9 | 10.67 | 113 | 16 | 11 |
| A10 | 11.9 | 137 | 17 | 20 |
>TRINITY_DN132318_c0_g2_i8 from sample A1 / Example spliced isoformCAATAGTGCCCCATTCTTATGAAGTGTGCTTCCGATGCGAGGCCTTTTCAATAGTGCCCCATTCTTATGAAGTGTGCTTCCGATGCGAGGCCTTTTCAATAGTGCCCCATTCTTATGAACTGTTCTTCTGATGCGAGTTGATGTATGTCGATTTGTATCAATTTTTCTCCTCGAATGCCAGCGTGCCAGAGTGTGCATGC
TTTAATAAAGCAGGGAATTAGCTGCGTTGGAGCTTTTCCTCTTCTTGCATTTTCATATGAAAGGAATGGCTTATCCTAACATGTGAGCATTGAAGGGTTTAGGGTTCAATATATCATAGCCGTTCAAAGTGGAATAGGATCCTACACTTCAAATTTGATCCCTGCGTCCAAACCCAAATTTAGGCAGGGTCTTTTCAATT
TTGCAAGGAATTTTTGGTCTGGACGAACCGAAAGCCTCCTCGGCTCTATATCCTGAAAGAGAGGACTTAATCTTTCTTTTGTCTATGGTTATCTTGTCGTGGGAGCTTACCAATAGTTAAATCATTCTTTCATTTTATATTGTCTAACAACGTAGCTGCTACGTCTCTATAGTAGCTTTTAATATATTATATGTACTGCG
GAGGTGGGAGGTCTCCCTAACGAAGCCACGTTGACACCCAGTGGTTTTTACTGGTTTTGATTCCTAGTCAGTATGGATTATGAAAGGCCGCTTTGAAGCAGCAGAATAATTCCGCAGGTAGGCAGAGGCAGGGTAAAGAGGAAAGGTACATGGACTAACTCGTGGGCAGAGATAGAAGATGTTTTTTTCTGGTTGTTTCA
TATAATCTACAAGAATTCTGTTGTATCAAAGACTGAAGGATGAAAATAAATCCACCTGACATTGAAACATGCCTGGAAATTGCAGATTGAATTGCAGTGCCAGAGCCAGAAATTTAGACTGTATCGACTGCAACTGAAAGGTAGACTCTATCTGCTGCAACTGGAAGCACTGCAAACTTGTGTGGTAAACAGGAATTGTC
TTTCGAAGGCTGTGCAACATAATAGAAACGGAGGCACAGGTAGAGGTAAAGATAGGTAGAGTTGAGAATGCACCGCCTCAGAAATGTGCATTGAAGGGATGCTATGGGAGCAGGTGCAGCATTGAAGTGAGTACCAGATTCTCATTGAAGTCGTAGGTGCAACATTGAAGTTGACTAACTCTTTTCAATCGTCGGACAGG
GAATCAGACGGCCTTAATTAAACAAAAGGGGAAATCAGGGGAGTCGCTTCCCATTTGTGAAACGCCTTACGGCGTAATTATAGATGATGCATATGTTGGGGTTTCGAACCCCCACGGCCTCGGGTAAGCAGAAAGAATCTGATCTTTCTCCTGCAAGTACTCCTACGGTCGCGGCTTCAACTGGCTCGGCCAGGCCGCTA
AGACTGGTCTACTACGATGAGAAAGGCAAGTTTAGAATGGACCCCGAGGCTGTCGCCACTCTGCAGCTTGTCAAAGGGCCTCTCGGCGTCGTTTCCGTCTGCGGCCGGGCGCGTCAAGGGAAGAGCTTCATTTTAAATCAGCTACTTGGAAGGAGCAGTGGCTTCCAGGTTGAATCTACACATCGACCATGTACAAAGGG
CCTTTGGATGTGGAGTGCTCCACTGAAGAGGACTGCTCTAGATGGAACTGAGTACAATCTCTTACTTCTTGACAGCGAAGGCATCGATGCATATGATCAAACTGGCACATACAGTACACAGATATTTTCATTGGCAGTCCTTTTGTCAAGCATGTTTGTGTATAATCAGATGGGAGGGATTGATGAAGCTGCTCTGGATC
GTTTATCTCTTGTTACCGAGATGACAAAACATATTCGAGTTAGAGCTTCAAAGGGTCGAACCACAGCAGCAGATATTGGGCAGTTTGCTCCACATTTTGTGTGGCTTTTGCGCGATTTTTATTTGAACCTGGCAGAAGATGGTAGGATGATTACCCCACGAGAGTATTTGGAACTAGCCCTGAAACCGATGCCTGGCTCT
GGAAAAGATATTGCGGCGAAGAATGAGATTCGTGATTCTATTCGAGCTCTCTTTCCTGAACGGGACTGCTTCACTCTAGTACGCCCATTGAATAACGAGAAAGATCTGCAGCGACTGGATCAGATTGCTATGGAGAAACTGCGCCCCGAATTTCGAGCTGGTCTGGATGCATTAACAAAGTTTGTTCTTGAAAGAACAAG
GCCGAAGCAAGTTGGAGCAACAGTCATGACTGGCCCTATATTTGCAGGGCTTACACAATCGTTCTTGGATGCTCTTAATGCAGGAGCTGTGCCAACAATTGCAACTTCCTGGCAGAGTGTGGAGGAAGCTGAGTGTAGGAGAGCTTATGATTCTGCCATTGAAGCATACACAGGGGCCTTCGACCAATCAAAACCAGCTG
ATGAGGTTGCTTTGCAAGAAGCGCATGAGTCTGCGTTACAAAAGGCTTTAGCTGTTTTTAACAGTAGTGCAGTGGGAGCTGGTACTGCAATGCAGAAGTATGAGAAAATGGTTCAAACTACCTTGAAAAAACAATTTGAGGAGTTTAAGCGAAATGCATTCAGGGAGGCTGAGCTGAAATGCACAAGTATTCTTCAAAAT
ATGGACAAGAAGTTGCGTTCTGCTTGCTATGCATTTGATGCAAAACTTGATCAAGTGCTACAGAGTATGAGTCGGAATCTTCTGGCCCTTACAAATGGAATAAACTTGCCAACTTTTTACAGCAAAGTTTGGAAGGCCCTATATTTGACCTCACGAAGAGACTTGGGGATCAGAGTTCATCTGAAAGGGCTGCTCTTCAG
TTAAAATGCCGTTCAGTTGAGGATAAGTTAGCATTGATGGGAAAGCAGCTGGAGATTAGTCAAAAGCATGGTGGTGATTATCTGAAAAGATACGAGGATGCGATTTCAGATAAAAAGAAGATTTCTGATGAATACGCAGCTCGATTGGCTAATATGCAAAGCAAGTACAGCTCATTAGAAGAAAAACATGCTAATGTGTG
TGAAGTTTTGGAATCAGTCAGGAAGGAAGCTTCTGGATTGAAGAAGAAGTATGACCAATCTATTGTCAAGCAAAAGATTGAAAAAGAGCAGATTGATGCAGAAATGGCCTCACTAAAAAGTAGGTGTAGTTCTGCTGAAGCAAGGCTGAGTGCTGCTCGTGAACAAGTTGAATCGGCCAAGGAAGAGGCACTTGAGTGGA
GGCGAAAGCATGATCTGGCGGTGAAGGAATCTCAAA
>TRINITY_DN132318_c0_g2_i5 from sample A1 / Example unspliced isoform:CAATAGTGCCCCATTCTTATGAAGTGTGCTTCCGATGCGAGGCCTTTTCAATAGTGCCCCATTCTTATGAAGTGTGCTTCCGATGCGAGGCCTTTTCAATAGTGCCCCATTCTTATGAACTGTTCTTCTGATGCGAGTTGATGTATGTCGATTTGTATCAATTTTTCTCCTCGAATGCCAGCGTGCCAGAGTGTGCATGC
TTTAATAAAGCAGGGAATTAGCTGCGTTGGAGCTTTTCCTCTTCTTGCATTTTCATATGAAAGGAATGGCTTATCCTAACATGTGAGCATTGAAGGGTTTAGGGTTCAATATATCATAGCCGTTCAAAGTGGAATAGGATCCTACACTTCAAATTTGATCCCTGCGTCCAAACCCAAATTTAGGCAGGGTCTTTTCAATT
TTGCAAGGAATTTTTGGTCTGGACGAACCGAAAGCCTCCTCGGCTCTATATCCTGAAAGAGAGGACTTAATCTTTCTTTTGTCTATGGTTATCTTGTCGTGGGAGCTTACCAATAGTTAAATCATTCTTTCATTTTATATTGTCTAACAACGTAGCTGCTACGTCTCTATAGTAGCTTTTAATATATTATATGTACTGCG
GAGGTGGGAGGTCTCCCTAACGAAGCCACGTTGACACCCAGTGGTTTTTACTGGTTTTGATTCCTAGTCAGTATGGATTATGAAAGGCCGCTTTGAAGCAGCAGAATAATTCCGCAGGTAGGCAGAGGCAGGGTAAAGAGGAAAGATTGAATTGCAGTGCCAGAGCCAGAAATTTAGACTGTATCGACTGCAACTGAAAG
GTAGACTCTATCTGCTGCAACTGGAAGCACTGCAAACTTGTGTGGTAAACAGGAATTGTCTTTCGAAGGCTGTGCAACATAATAGAAACGGAGGCACAGGTAGAGGTAAAGATAGGTAGAGTTGAGAATGCACCGCCTCAGAAATGTGCATTGAAGGGATGCTATGGGAGCAGGTGCAGCATTGAAGTGAGTACCAGATT
CTCATTGAAGTCGTAGGTGCAACATTGAAGTTGACTAACTCTTTTCAATCGTCGGACAGGGAATCAGACGGCCTTAATTAAACAAAAGGGGAAATCAGGGGAGTCGCTTCCCATTTGTGAAACGCCTTACGGCGTAATTATAGATGATGCATATGTTGGGGTTTCGAACCCCCACGGCCTCGGGTAAGCAGAAAGAATCT
GATCTTTCTCCTGCAAGTACTCCTACGGTCGCGGCTTCAACTGGCTCGGCCAGGCCGCTAAGACTGGTCTACTACGATGAGAAAGGCAAGTTTAGAATGGACCCCGAGGCTGTCGCCACTCTGCAGCTTGTCAAAGGGCCTCTCGGCGTCGTTTCCGTCTGCGGCCGGGCGCGTCAAGGGAAGAGCTTCATTTTAAATCA
GCTACTTGGAAGGAGCAGTGGCTTCCAGGTTGAATCTACACATCGACCATGTACAAAGGGCCTTTGGATGTGGAGTGCTCCACTGAAGAGGACTGCTCTAGATGGAACTGAGTACAATCTCTTACTTCTTGACAGCGAAGGCATCGATGCATATGATCAAACTGGCACATACAGTACACAGATATTTTCATTGGCAGTCC
TTTTGTCAAGCATGTTTGTGTATAATCAGATGGGAGGGATTGATGAAGCTGCTCTGGATCGTTTATCTCTTGTTACCGAGATGACAAAACATATTCGAGTTAGAGCTTCAAAGGGTCGAACCACAGCAGCAGATATTGGGCAGTTTGCTCCACATTTTGTGTGGCTTTTGCGCGATTTTTATTTGAACCTGGCAGAAGAT
GGTAGGATGATTACCCCACGAGAGTATTTGGAACTAGCCCTGAAACCGATGCCTGGCTCTGGAAAAGATATTGCGGCGAAGAATGAGATTCGTGATTCTATTCGAGCTCTCTTTCCTGAACGGGACTGCTTCACTCTAGTACGCCCATTGAATAACGAGAAAGATCTGCAGCGACTGGATCAGATTGCTATGGAGAAACT
GCGCCCCGAATTTCGAGCTGGTCTGGATGCATTAACAAAGTTTGTTCTTGAAAGAACAAGGCCGAAGCAAGTTGGAGCAACAGTCATGACTGGCCCTATATTTGCAGGGCTTACACAATCGTTCTTGGATGCTCTTAATGCAGGAGCTGTGCCAACAATTGCAACTTCCTGGCAGAGTGTGGAGGAAGCTGAGTGTAGGA
GAGCTTATGATTCTGCCATTGAAGCATACACAGGGGCCTTCGACCAATCAAAACCAGCTGATGAGgttatatacagttttttgtttaaagtttgcaaatttcaaggttaatagattggcttcttagcagcatgttaagcttggattttgcagGTTGCTTTGCAAGAAGCGCATGAGTCTGCGTTACAAAAGGCTTTAGCT
GTTTTTAACAGTAGTGCAGTGGGAGCTGGTGCTGCAAGGCAGAAGTATGAGAAGATGGTTCAAAATACCTTGAAAAAACAATTTGAGGTAAAGATGATGGGCACTTGGAAATGCTTCAGTTCTCAATTAACCTTCGCTATATGATCTTATAAAATAGTAAATACAGATCAAGAAATCTAATGTTCACGTCCTTAATTTTT
TACACTCCATGTTCTATACTTGTGGTTTTCTTATTGGGTGCAGCGATTCTAGAGCTGTTTAGGACAATGGTGTGTTTCATAATTGAATTATTGTGTCTTATGTTTTGCATGTTCTGTTCACAATATGAGCTTATAATTTTTACTGGATATAGCAGAAGCATCATTGAAATTACTTCTGAAGGTGCCTTGAGCTAATGGTA
CTCTACTCCTACTGCACACTCAGCTGCATTGATAATCTAAGTGTTCAAATTCAGTGGCAAGTTTGCAACATTCTTTGCTTGGTTCATGTATGTACAATGCATGGTCGGCTGTAATATAATAATGTCAGTTTAAGTATATTTCCCAATTTTTCTCATTGCCCAGAGGAACAAGACTTAGGTATATTTCTCTAATCTTTTCT
TTTTCAAATTTTTAAATTCTATATTTTATATATTTAAAATACAAAAAAATCAAATATATGAAAAACCCCTAAAAATATAAAACAATACAAAAATACATCCGTATTAAAGAATCCAATATGTCAAAGTAGTGCTCCCTCTTTGATTTTATCGTAGATCTTTAAGGTTGTCCTCTGTTAATTTCTCAAGACTCAGCTACAGG
AAATTATTTCTAAGACTACTCACAGCAAATAAAAAAAACTTTAG
Intron 6 GTTTGAAGTT ... ATGTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.97 | 234 | 38 | 0 |
| A2 | 15.87 | 175 | 33 | 0 |
| A3 | 14.5 | 171 | 29 | 1 |
| A4 | 11.22 | 87 | 11 | 0 |
| A5 | 5.56 | 34 | 2 | 0 |
| A6 | 13.64 | 38 | 6 | 0 |
| A7 | 16.11 | 328 | 63 | 0 |
| A8 | 13.92 | 272 | 44 | 0 |
| A9 | 12.73 | 233 | 34 | 0 |
| A10 | 14.44 | 237 | 40 | 0 |
>TRINITY_DN48825_c0_g1_i1 from sample A7 / Example spliced isoformATATTCTCACTTTTTAAAACTTTCTCTTTCCACCGAGTGCAAATATCATGACAGTCAACATCTTTTGCCTCCCATTACATACTTTGAAACCCTTGTTGCTGCAATTAATATTTTTTTTGCTCTGCCCTCCTCACCTTTAGGGAAACTCCGTGCCATGCATTCAATTTCATCTAATCCCAGCAACTGAAATACGTTGCTAC
CGCTAAACCTTTTATATTCACACCATTCTCAACCGGTCTCTCGTTCGAATCCCGACGACCCAAGCGGAGCAGGTGCGCCTCAACCTCTGTGTTCTCTGCAGCAAAGATGATGCATATGTTGGGGTTTCGAACCCCCGCGGCGTCGGGTAAGCAGAAAGAATCCGATCTTTCTCCTGCAAGTCCTTCGACTCCTACGTTCG
CGGCTTCAACTGGCCCGGCCAGGCCGCTAAGACTGGTCTACTGCGATGAGAAGGGCAAGTTTAGAATGGACCCCGAGGCTGTCGCCACTCTGCAGCTTGTCAAAGGGCCTCTCGGCGTCGTTTCCGTCTGCGGCCGGGCGCGTCAAGGGAAGAGCTTCATTTTAAATCAGCTACTTGGAAGGAGCAGTGGCTTCCAGGTT
GCATCTACGCATCGACCATGTACGAAGGGCCTTTGGATGTGGAGTGCTCCACTGAAGAGGACTGCTCTAGATGGAACTGAGTACAATCTCTTACTTCTTGACAGCGAAGGCATCGATGCATATGATCAAACTGGCACATACAGTACACAGATATTTTCACTGGCAGTCCTTTTATCGAGCATGTTTGTCTATAATCAGAT
GGGAGGGATTGATGAAGCTGCTCTGGATCGTTTATCTCTTGTTACCGAGATGACAAAACATATTCGAGTTAGAGCTTCAAAGGGTCGAACCACAGCAGCAGATATTGGGCAGTTCTCTCCACACTTTGTGTGGCTTTTGCGTGATTTTTATTTGAACCTGGCAGAAGATGGTAGGATGATTACCCCACGAGAGTATTTGG
AACTAGCCCTGAAACCGATGCCTGGCGCTGGAAAGGATATTGCAGCGAAGAATGAGATTCGTGAGTCTATTCGAGCTCTCTTTCCTGAACGGGACTGCTTCCCTCTAGTACGCCCGTTAAATAATGAGAAAGATCTGCAGCGACTGGATCAGATTGCTATGGAGAAACTGCGCCCCGAATTTCGAGCTGGTCTGGATGCA
TTAACAAAGTTTGTTCTTGAAAGAACAAGGCCGAAGCAAGTTGGAGCAACAGTCATGACTGGACCTATACTTGCAGGGCTTACTCAATCGTTCTTGGATGCTCTTAATGCAGGAGCTGTGCCAACAATTGCAACTTCCTGGCAGTTTGAGTGATTATTTAAGTCATGGCAGAGTGTGGAGGAAGCTGAGTGTAGGAGAGC
TTATGATTCTGCCATTGAAGCATACACGGGGGCCTTTGACCGATCAAAACCACCTGATGAGGTTGCTTTGCAAGAAACACATGAGTCTGCATTACAAAAGGCTTTAGCTGTTTTTAACAGTAGTGCAGTGGGAGCTGGTGCTGCAAGGCAGAAGTATGAGAAGATGGTTCAAAATACCTTGAAAAAACAATTTGAGGAGT
TTAAGCGAAATGCATTCAGGGAGGCTGAGCTGAAATGCACAAGTATTCTTCAAAATATGGACAAGAAGTTACGTTCTGCTTGCTATGCATCTGATGCAAAACTTGATCGAGTGCTACAGGTTTTAGGTGACCTTGTGTCAGAGTATGAATCAACATCTTCTGGCCCTTACAAATGGAATAAACTTGCCAACTTTTTACAG
CAAAGTTTGGAAGGCCCTATATTTGACCTCACGAAGAGACTTGGGGATCAGAGTTCATCTGAAAGGGCTGCTCTTCAGTTAAAATGCCGTTCAGTTGAGGATAAGTTAGCATTGATGGGAAAGCAGCTGGAGATTAGTCAAAAGCATGGTGGTGATTATCTGAAAAGATACGAGGATGCGATTTCAGATAAAAAGAAGAT
TTCTGATGAATACGCAGCTCGATTGGCTAATATGCAAAGCAAGTACAGCTCATTAGAAGAAAAACATGCTAATGTGTGTGAAGTTTTGGAATCAGTCAGGAAGGAAGCTTCTGGATTGAAGAAGAAGTATGACCAATCTATTGTCAAGCAAAAGATTGAAAAAGAGCAGATTGATGCAGAAATGGCCTCACTAAAAAGTA
GGTGTAGTTCTGCTGAAGCAAGGCTGAGTGCTGCTCGTGAACAAGTTGAATCGGCCAAGGAAGAGGCACTTGAGTGGAGGCGAAAGCATGATCTGGCGGTGAAGGAATCTCAAACATCATTGCAAAAGGCTACATCACTTCATGAGCGTGCTAGCAAGCAAGCACAGCTAAGAGAGGATTCCCTAAGAGCAGAGTTTTCA
GCCACCATAGCACAAAAGGAGAATGAAGTAAAAGACTCTCTAGCAAAGTTTGAACATGCTGAGCATCGTTTAGCTGGATTAAACCTACAATTAAAGGGACAAGAAAGTAAACTAAAAACTCAAGAATTGGACATTGGCATGCTGAAGGCCGAAGTAAGGGATTTACAAGAGAAACTGGAAGCTGCTAAAGCCACAGCTCA
GTCAGCAGAGAAGGAAGCCAAGATACTAGAACAAGAGAAATCTCACTTAGAGCAAAGGTTTGCAACAGATTTCAAGAGATTTGAAGAAGCAGATGAAAGGTGTAAGGCTGCAGAGAAGGAAGCTAAGCGAGCTGTTGAGGTAGCAGAGAAAGCTCGTGATGAGGCAGCTTTAGCACAACATGAAAAATCAGAAATTCAGA
GATTGGCCATAGAAAGATTAACTGCAATTGAAAGATCAGAAAGGCATATGGAAACATTGGAGAGGGAAAAAGCTGATTTATTACATGAAGTTGAAAGAATCAGAAGATCTGAACAGGAGGCAGCGTCCAAGGTTGTGACCTTAGAAGCAAGGGTTGATGAACGGGAGCGGGAAATGGAGGAGCTTCTTCAGTCGACAAAT
GAACAAAGAGCAAGCACTGTCCAAGTCCTTGAGAGTCTTTTAGGTAGTGAAAGGACAGCTAGAGCAGAGGCTAATGCCAGAGCCGAAGCACTTTCTCTGCAGCTTCAGGCCACACAAGGAAAACTGGATGCTCTGCAACAGGAGTTGACTTCTGTCCGCTTGAATGAAACGGCTTTAGATAACAAGCTAAAGACCACTTC
CCGAAGTAAAAGAATGAGATCTGAAGAATGTGCTGGAGTGGACTCAGTGCAAGATATAGACATTGAAGTGGAGACTGTTAGACAAAGAAAGAAAAGGAATACAAGCAATGAAAATGGATACAACCCCAAAATGATGCCGGCGGAGGGGGGTTCGGTGATCAAGCCAGATGATGACAATAACTCCAGTGACATGAAAGAAC
CGCAAGATTATCTCAAATTTACAGTTCAAAAACTTAAACAGGAGCTCACAAGGCATGGATATGCTGCAGAACTCTTACAACTAAGAACTCCTACCAAAAAGGACATACTTCAATTGTATGAAAAACATCTTAAACCTTAGTTAGTTTGATAAAAACATGTTAAACGGAAGTTTGATAAAAACATGTTAAACAGGTTCTGG
GATTGGTAGTTCTTTGCTGCTTTTGAAATGTCAAAAGCTCAGTTACATGAAGACTCATGCAACATGCTTGTATGATCAAGAAGAAGTATAGGAGACACAGTGAAGGCTTGTATTTATTGTCTGTTTGAGAGGCAAATTATTTGTTATACCTGCTTTTTTATTGATAAATTTGGCCCCTCTAAACTTAGGAATTGTACATT
AGTAAAGGAAAATCTAATTGTAATTCCCTGATGCTATTGCTTTAAACTTAATTTGTCAGAGATTGTTTCACAATTTGTCAATAGAAAGTTTTCTAATGTCTTGATCACGTTCTTTTGATAATAGAGGATCAACTGCTTCTCTG
>TRINITY_DN48825_c0_g1_i5 from sample A7 / Example unspliced isoform:ATATTCTCACTTTTTAAAACTTTCTCTTTCCACCGAGTGCAAATATCATGACAGTCAACATCTTTTGCCTCCCATTACATACTTTGAAACCCTTGTTGCTGCAATTAATATTTTTTTTGCTCTGCCCTCCTCACCTTTAGGGAAACTCCGTGCCATGCATTCAATTTCATCTAATCCCAGCAACTGAAATACGTTGCTAC
CGCTAAACCTTTTATATTCACACCATTCTCAACCGGTCTCTCGTTCGAATCCCGACGACCCAAGCGGAGCAGGTGCGCCTCAACCTCTGTGTTCTCTGCAGCAAAGATGATGCATATGTTGGGGTTTCGAACCCCCGCGGCGTCGGGTAAGCAGAAAGAATCCGATCTTTCTCCTGCAAGTCCTTCGACTCCTACGTTCG
CGGCTTCAACTGGCCCGGCCAGGCCGCTAAGACTGGTCTACTGCGATGAGAAGGGCAAGTTTAGAATGGACCCCGAGGCTGTCGCCACTCTGCAGCTTGTCAAAGGGCCTCTCGGCGTCGTTTCCGTCTGCGGCCGGGCGCGTCAAGGGAAGAGCTTCATTTTAAATCAGCTACTTGGAAGGAGCAGTGGCTTCCAGGTT
GCATCTACGCATCGACCATGTACGAAGGGCCTTTGGATGTGGAGTGCTCCACTGAAGAGGACTGCTCTAGATGGAACTGAGTACAATCTCTTACTTCTTGACAGCGAAGGCATCGATGCATATGATCAAACTGGCACATACAGTACACAGATATTTTCACTGGCAGTCCTTTTATCGAGCATGTTTGTCTATAATCAGAT
GGGAGGGATTGATGAAGCTGCTCTGGATCGTTTATCTCTTGTTACCGAGATGACAAAACATATTCGAGTTAGAGCTTCAAAGGGTCGAACCACAGCAGCAGATATTGGGCAGTTCTCTCCACACTTTGTGTGGCTTTTGCGTGATTTTTATTTGAACCTGGCAGAAGATGGTAGGATGATTACCCCACGAGAGTATTTGG
AACTAGCCCTGAAACCGATGCCTGGCGCTGGAAAGGATATTGCAGCGAAGAATGAGATTCGTGAGTCTATTCGAGCTCTCTTTCCTGAACGGGACTGCTTCCCTCTAGTACGCCCGTTAAATAATGAGAAAGATCTGCAGCGACTGGATCAGATTGCTATGGAGAAACTGCGCCCCGAATTTCGAGCTGGTCTGGATGCA
TTAACAAAGTTTGTTCTTGAAAGAACAAGGCCGAAGCAAGTTGGAGCAACAGTCATGACTGGACCTATACTTGCAGGGCTTACTCAATCGTTCTTGGATGCTCTTAATGCAGGAGCTGTGCCAACAATTGCAACTTCCTGGCAGTTTGAGTGATTATTTAAGTCATGGCAGAGTGTGGAGGAAGCTGAGTGTAGGAGAGC
TTATGATTCTGCCATTGAAGCATACACGGGGGCCTTTGACCGATCAAAACCACCTGATGAGGTTGCTTTGCAAGAAACACATGAGTCTGCATTACAAAAGGCTTTAGCTGTTTTTAACAGTAGTGCAGTGGGAGCTGGTGCTGCAAGGCAGAAGTATGAGAAGATGGTTCAAAATACCTTGAAAAAACAATTTGAGGAGT
TTAAGCGAAATGCATTCAGGGAGGCTGAGCTGAAATGCACAAGTATTCTTCAAAATATGGACAAGAAGTTACGTTCTGCTTGCTATGCATCTGATGCAAAACTTGATCGAGTGCTACAGGTTTTAGGTGACCTTGTGTCAGAGTATGAATCAACATCTTCTGGCCCTTACAAATGGAATAAACTTGCCAACTTTTTACAG
CAAAGTTTGGAAGGCCCTATATTTGACCTCACGAAGAGACTTGGGGATCAGAGTTCATCTGAAAGGGCTGCTCTTCAGTTAAAATGCCGTTCAGTTGAGGATAAGTTAGCATTGATGGGAAAGCAGCTGGAGATTAGTCAAAAGCATGGGGGTGATTATCTGAAAAGATATGAGGGTGCAATTTCAGATAAAATGAAGAT
TTCTGATGAATATGCAGCTCGATTGGCTAATATGCAAAGCAAGTACAGCTCATTAGAAGAAAAACATGCTAATGTGTGTGAAGTTTTGGAATCAGTCAGAAAGGAAGCTTCGGAATTGAAGAAGAAGTATAACCAATCTATTGTCAATCAAAAGATTGAAAAAGAGCAGATTGATGCAGAAATGGCCTCACTGAAAACTA
GGTGTAGTTCCGCTGAAGCAAGGCTGAGTGCTGCTCGTGAACAAGTTGAATCGGCCAAGGAAGAGGCACTTGAGTGGAGGCGAAAGCATGATCTGGCGGTGAAGGAAGCTCAAACATCATTACAAAAGGCTACATCACTTCATGAGCGTGCTAGCAAGCAAGCACAGCTAAGAGAGGATTCCCTAAGAGCAGAGTTTTCA
GCCACCATAGCACAAAAGGAGAATGGAGTAAAAGACTCTCTAGCAAGGTTTGAACATGCTGAGCATCATTTAGCTGGATTAAACCTACAATTAAAGgtttgaagtttatagcttcttccaacaaattttgtattaatttgcccacatgccaagttacttatgttatcctggtatgtttacagGGACAAGAAAG
Intron 7 GTATGCCATT ... TTTGATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.58 | 180 | 52 | 53 |
| A2 | 26.91 | 129 | 50 | 45 |
| A3 | 21.77 | 194 | 58 | 50 |
| A4 | 19.05 | 170 | 35 | 45 |
| A5 | 25.21 | 89 | 24 | 36 |
| A6 | 27.27 | 4 | 0 | 3 |
| A7 | 21.27 | 87 | 32 | 15 |
| A8 | 20.99 | 32 | 8 | 9 |
| A9 | 15.15 | 70 | 11 | 14 |
| A10 | 19.49 | 95 | 25 | 21 |
>TRINITY_DN110967_c0_g1_i11 from sample A4 / Example spliced isoformGCAATTAATATTTTTTCGCTCTGCCCTCCTCACCTTTAGGGAAACTCCGTGCCATGCATTCAATTTCATCTAATCCCAGCAACTGAAATACGTTGCTACCGCTAAACCTTTTATATTCACACCATTCTCAACCGGTCTCTCGTTCGAATCCCGACGACCCAAGCGGAGCAGGTGTGCCTCAACCTCTGTGTTCTCTGCAG
CAAAGATGATGCATATGTTGGGGTTTCGAACCCCCGCGGCGTCGGGTAAGCAGAAAGAAACCGATCTTTCTCCTGCAAGTCCTTCGACTCCTACGTTCGCGGCTTCAACTGGCCCGGCCAGGCCGCTAAGACTGGTCTACTGCGATGAGAAGGGCAAGTTTAGAATGGACCCCGAGGCTGTCGCCACTCTGCAGCTTGTC
AAAGGGCCTCTCGGCGTCGTTTCCGTCTGCGGCCGGGCGCGTCAAGGGAAGAGCTTCATTTTAAATCAGCTACTTGGAAGGAGCAGTGGCTTCCAGGTTGCATCTACGCATCGACCATGTACGAAGGGCCTTTGGATGTGGAGTGCTCCACTGAAGAGGACTGCTCTAGATGGAACTGAGTACAATCTCTTACTTCTTGA
CAGCGAAGGCATCGATGCATATGATCAAACTGGCACATACAGTACACAGATATTTTCACTGGCAGTCCTTTTATCGAGCATGTTTGTCTATAATCAGATGGGAGGGATTGATGAAGCTGCTCTGGATCGTTTATCTCTTGTTACCGAGATGACAAAACATATTCGAGTTAGAGCTTCAAAGGGTCGAACCACAGCAGCAG
ATATTGGGCAGTTCTCTCCACACTTTGTGTGGCTTTTGCGTGATTTTTATTTGAACCTGGCAGAAGATGGTAGGATGATAACCCCACGAGAGTATTTGGAGCTAGCCCTGAAACCGATGCCTGGCGCTGGAAAGGATATTGCAGCGAAGAATGAGATTCGTGAGTCTATTCGAGCTCTCTTTCCTGAACGGGACTGCTTC
CCTCTAGTACGCCCGTTAAATAATGAGAAAGATCTGCAGCGACTGGATCAGATTGCCATGGAGAAACTGCGCCCTGAATTTCGAGCTGGTCTGGATGCATTAACAAAGTTTGTTCTTGAAAGAACAAGGCCGAAGCAAGTTGGAGCAACAGTCATGACTGGACCTATACTTGCAGGGCTTACTCAATCGTTCTTGGATGC
TCTTAATGCAGGAGCTGTGCCAACAATTGCAACTTCCTGGCAGAGTGTGGAGGAAGCTGAGTGTAGGAGAGCTTATGATTCTGCCATTGAAGCATACACGGGGGCCTTTGACCGATCAAAACCACCTGATGAGGTTGCTTTGCAAGAAACACATGAGTCTGCATTACAAAAGGCTTTAGCTGTTTTTAACAGTAGTGCAG
TGGGAGCTGGTGCTGCAAGGCAGAAGTATGAGAAGATGGTTCAAAATACCTTGAAAAAACAATTTGAGGAGTTTAAGCGAAATGCATTCAGGGAGGCTGAGCTGAAATGCACAAGTATTCTTCAAAATATGGACAAGAAGTTACGTTCTGCTTGCTATGCATCTGATGCAAAACTTGATCGAGTGCTACAGGTTTTAGGT
GACCTTGTGTCAGAGTATGAATCAACATCTTCTGGCCCTTACAAATGGAATAAACTTGCCAACTTTTTACAGCAAAGTTTGGAAGGCCCTATATTTGACCTCACGAAGAGACTTGGGGATCAGAGTTCATCTGAAAGGGCTGCTCTTCAGTTAAAATGCCGTTCAGTTGAGGATAAGTTAGCATTGATGGGAAAGCAGCT
GGAGATTAGTCAAAAGCATGGTGGTGATTATCTGAAAAGATACGAGGATGCGATTTCAGATAAAAAGAAGATTTCTGATGAATACGCAGCTCGATTGGCTAATATGCAAAGCAAGTACAGCTCATTAGAAGAAAAACATGCTAATGTGTGTGAAGTTTTGGAATCAGTCAGGAAGGAAGCTTCTGGATTGAAGAAGAAGT
ATGACCAATCTATTGTCAAGCAAAAGATTGAAAAAGAGCAGATTGATGCAGAAATGGCCTCACTAAAAAGTAGGTGTAGTTCTGCTGAAGCAAGGCTGAGTGCTGCTCGTGAACAAGTTGAATCGGCCAAGGAAGAGGCACTTGAGTGGAGGCGAAAGCATGATCTGGCGGTGAAGGAATCTCAAACATCATTGCAAAAG
GCTACATCACTTCATGAGCGTGCTAGCAAGCAAGCACAGCTAAGAGAGGATTCCCTAAGAGCAGAGTTTTCAGCCACCATAGCACAAAAGGAGAATGAAGTAAAAGACTCTCTAGCAAAGTTTGAACATGCTGAGCATCGTTTAGCTGGATTAAACCTACAATTAAAGGGACAAGAAAGTAAACTAAAAACTCAAGAATT
GGACATTGGCATGCTGAAGGCCGAAGTAAGGGATTTACAAGAGAAACTGGAAGCTGCTAAAGCCACAGCTCAGTCAGCAGAGAAGGAAGCCAAGATACTAGAACAAGAGAAATCTCACTTAGAGCAAAGGTTTGCAACAGATTTCAAGAGATTTGAAGAAGCAGATGAAAGGTGTAAGGCTGCAGAGAAGGAAGCTAAGC
GAGCTGTTGAGGTAGCAGAGAAAGCTCGTGATGAGGCAGCTTTAGCACAACATGAAAAATCAGAAATTCAGAGATTGGCCATAGAAAGATTAACTGCAATTGAAAGATCAGAAAGGCATATGGAAACATTGGAGAGGGAAAAAGCTGATTTATTACATGAAGTTGAAAGAATCAGAAGATCTGAACAGGAGGCAGCGTCC
AAGGTTGTGACCTTAGAAGCAAGGGTTGATGAACGGGAGCGGGAAATGGAGGAGCTTCTTCAGTCGACAAATGAACAAAGAGCAAGCACTGTCCAAGTCCTTGAGAGTCTTTTAGGTAGTGAAAGGACAGCTAGAGCAGAGGCTAATGCCAGAGCCGAAGCACTTTCTCTGCAGCTTCAGGCCACACAAGGAAAACTGGA
TGCTCTGCAACAGGAGTTGACTTCTGTCCGCTTGAATGAAACGGCTTTAGATAACAAGCTAAAGACCACTTCCCGAAGTAAAAGAATGAGATCTGAAGAATGTGCTGGGGTGGACTCAGTGCAAGATATGGACATTGAAGTGGAGACTGTTAGACAAAGAAAGAAAAGGAATACAAGCAATGAAAATGGATACAACCCCA
AAATGATGCCGGCGGAGGGGGGTTCGGTGATCAAGCCAGATGATGACAATAACTCCAGTGACATGAAAGAACCGCAAGATTATCTCAAATTTACAGTTCAAAAACTTAAACAGGAGCTCACAAGGCATGGATATGCTGCAGAACTTTTACAACTAAGAACTCCTACCAAAAAGGACATACTTCAATTGTATGAAAAACAT
CTTAAACCTTAGTTAGTTTGATAAAAACATGTTAAACGGAAGTTTGATAAAAACATGTTAAACAGGTTCTGGGATTGGTAGTTCTTTGCTGCTTTTGAAATGTCAAAAGCTCAGTTACATGAAGACTCATGCAACATGCTTGTATGATCAAGAAGAAGTATAGGAGACACAGTGAAGGCTTGTATTTATTGTCTGTTTGA
GAGGCAAATTATTTGTTATACCTGCTTTTTTATTGATAAATTTGGCCCCTCTAAACTTAGGAATTGTACATTAGTAAAGGAAAATCTAATTGTAATTCCCTGATGCTATTGCTTTAAACTTAATTTGTCAG
>TRINITY_DN110967_c0_g1_i14 from sample A4 / Example unspliced isoform:GCAATTAATATTTTTTCGCTCTGCCCTCCTCACCTTTAGGGAAACTCCGTGCCATGCATTCAATTTCATCTAATCCCAGCAACTGAAATACGTTGCTACCGCTAAACCTTTTATATTCACACCATTCTCAACCGGTCTCTCGTTCGAATCCCGACGACCCAAGCGGAGCAGGTGTGCCTCAACCTCTGTGTTCTCTGCAG
CAAAGATGATGCATATGTTGGGGTTTCGAACCCCCGCGGCGTCGGGTAAGCAGAAAGAAACCGATCTTTCTCCTGCAAGTCCTTCGACTCCTACGTTCGCGGCTTCAACTGGCCCGGCCAGGCCGCTAAGACTGGTCTACTGCGATGAGAAGGGCAAGTTTAGAATGGACCCCGAGGCTGTCGCCACTCTGCAGCTTGTC
AAAGGGCCTCTCGGCGTCGTTTCCGTCTGCGGCCGGGCGCGTCAAGGGAAGAGCTTCATTTTAAATCAGCTACTTGGAAGGAGCAGTGGCTTCCAGGTTGCATCTACGCATCGACCATGTACGAAGGGCCTTTGGATGTGGAGTGCTCCACTGAAGAGGACTGCTCTAGATGGAACTGAGTACAATCTCTTACTTCTTGA
CAGCGAAGGCATCGATGCATATGATCAAACTGGCACATACAGTACACAGATATTTTCACTGGCAGTCCTTTTATCGAGCATGTTTGTCTATAATCAGgtatgccatttcttacagctcttagtcatgcttctcggcactgatcgtaagtatcactgaaccttactgagcttcccattacatgtttgagctaatcagtatt
ctccatccttcaatttgtaaatttgtaggaaaatagttccttgtttgttgagttgaatacctgtccattgtctagtttctttgtttttgaagcagtttatttgcttaaatggcaaactagagaacttgcctggatttgaacatttatttgacttgtctctgaaaggtcatgttggattattttggttattagttctgtaa
aaccagcttagtactgactgtccatttgattcagATGGGAGGGATTGATGAAGCTGCTCTGGATCGTTTATCTCTTGTTACCGAGATGACAAAACATATTCGAGTTAGAGCTTCAAAGGGTCGAACCACAGCAGCAGATATTGGGCAGTTCTCTCCACACTTTGTGTGGCTTTTGCGTGATTTTTATTTGAACCTGGCAG
AAGATGGTAGGATGATAACCCCACGAGAGTATTTGGAGCTAGCCCTGAAACCGATGCCTGGCGCTGGAAAGGATATTGCAGCGAAGAATGAGATTCGTGAGTCTATTCGAGCTCTCTTTCCTGAACGGGACTGCTTCCCTCTAGTACGCCCGTTAAATAATGAGAAAGATCTGCAGCGACTGGATCAGATTGCCATGGAG
AAACTGCGCCCTGAATTTCGAGCTGGTCTGGATGCATTAACAAAGTTTGTTCTTGAAAGAACAAGGCCGAAGCAAGTTGGAGCAACAGTCATGACTGGACCTATACTTGCAGGGCTTACTCAATCGTTCTTGGATGCTCTTAATGCAGGAGCTGTGCCAACAATTGCAACTTCCTGGCAGAGTGTGGAGGAAGCTGAGTG
TAGGAGAGCTTATGATTCTGCCATTGAAGCATACACGGGGGCCTTTGACCGATCAAAACCACCTGATGAGGTTGCTTTGCAAGAAACACATGAGTCTGCATTACAAAAGGCTTTAGCTGTTTTTAACAGTAGTGCAGTGGGAGCTGGTGCTGCAAGGCAGAAGTATGAGAAGATGGTTCAAAATACCTTGAAAAAACAAT
TTGAGGAGTTTAAGCGAAATGCATTCAGGGAGGCTGAGCTGAAATGCACAAGTATTCTTCAAAATATGGACAAGAAGTTACGTTCTGCTTGCTATGCATCTGATGCAAAACTTGATCGAGTGCTACAGGTTTTAGGTGACCTTGTGTCAGAGTATGAATCAACATCTTCTGGCCCTTACAAATGGAATAAACTTGCCAAC
TTTTTACAGCAAAGTTTGGAAGGCCCTATATTTGACCTCACGAAGAGACTTGGGGATCAGAGTTCATCTGAAAGGGCTGCTCTTCAGTTAAAATGCCGTTCAGTTGAGGATAAGTTAGCATTGATGGGAAAGCAGCTGGAGATTAGTCAAAAGCATGGTGGTGATTATCTGAAAAGATACGAGGATGCGATTTCAGATAA
AAAGAAGATTTCTGATGAATACGCAGCTCGATTGGCTAATATGCAAAGCAAGTACAGCTCATTAGAAGAAAAACATGCTAATGTGTGTGAAGTTTTGGAATCAGTCAGGAAGGAAGCTTCTGGATTGAAGAAGAAGTATGACCAATCTATTGTCAAGCAAAAGATTGAAAAAGAGCAGATTGATGCAGAAATGGCCTCAC
TAAAAAGTAGGTGTAGTTCTGCTGAAGCAAGGCTGAGTGCTGCTCGTGAACAAGTTGAATCGGCCAAGGAAGAGGCACTTGAGTGGAGGCGAAAGCATGATCTGGCGGTGAAGGAATCTCAAACATCATTGCAAAAGGCTACATCACTTCATGAGCGTGCTAGCAAGCAAGCACAGCTAAGAGAGGATTCCCTAAGAGCA
GAGTTTTCAGCCACCATAGCACAAAAGGAGAATGAAGTAAAAGACTCTCTAGCAAAGTTTGAACATGCTGAGCATCGTTTAGCTGGATTAAACCTACAATTAAAGGGACAAGAAAGTAAACTAAAAACTCAAGAATTGGACATTGGCATGCTGAAGGCCGAAGTAAGGGATTTACAAGAGAAACTGGAAGCTGCTAAAGC
CACAGCTCAGTCAGCAGAGAAGGAAGCCAAGATACTAGAACAAGAGAAATCTCACTTAGAGCAAAGGTTTGCAACAGATTTCAAGAGATTTGAAGAAGCAGATGAAAGGTGTAAGGCTGCAGAGAAGGAAGCTAAGCGAGCTGTTGAGGTAGCAGAGAAAGCTCGTGATGAGGCAGCTTTAGCACAACATGAAAAATCAG
AAATTCAGAGATTGGCCATAGAAAGATTAACTGCAATTGAAAGATCAGAAAGGCATATGGAAACATTGGAGAGGGAAAAAGCTGATTTATTACATGAAGTTGAAAGAATCAGAAGATCTGAACAGGAGGCAGCGTCCAAGGTTGTGACCTTAGAAGCAAGGGTTGATGAACGGGAGCGGGAAATGGAGGAGCTTCTTCAG
TCGACAAATGAACAAAGAGCAAGCACTGTCCAAGTCCTTGAGAGTCTTTTAGGTAGTGAAAGGACAGCTAGAGCAGAGGCTAATGCCAGAGCCGAAGCACTTTCTCTGCAGCTTCAGGCCACACAAGGAAAACTGGATGCTCTGCAACAGGAGTTGACTTCTGTCCGCTTGAATGAAACGGCTTTAGATAACAAGCTAAA
GACCACTTCCCGAAGTAAAAGAATGAGATCTGAAGAATGTGCTGGGGTGGACTCAGTGCAAGATATGGACATTGAAGTGGAGACTGTTAGACAAAGAAAGAAAAGGAATACAAGCAATGAAAATGGATACAACCCCAAAATGATGCCGGCGGAGGGGGGTTCGGTGATCAAGCCAGATGATGACAATAACTCCAGTGACA
TGAAAGAACCGCAAGATTATCTCAAATTTACAGTTCAAAAACTTAAACAGGAGCTCACAAGGCATGGATATGCTGCAGAACTTTTACAACTAAGAACTCCTACCAAAAAGGACATACTTCAATTGTATGAAAAACATCTTAAACCTTAGTTAGTTTGATAAAAACATGTTAAACGGAAGTTTGATAAAAACATGTTAAAC
AGGTTCTGGGATTGGTAGTTCTTTGCTGCTTTTGAAATGTCAAAAGCTCAGTTACATGAAGACTCATGCAACATGCTTGTATGATCAAGAAGAAGTATAGGAGACACAGTGAAGGCTTGTATTTATTGTCTGTTTGAGAGGCAAATTATTTGTTATACCTGCTTTTTTATTGATAAATTTGGCCCCTCTAAACTTAGGAA
TTGTACATTAGTAAAGGAAAATCTAATTGTAATTCCCTGATGCTATTGCTTTAAACTTAATTTGTCAG