sp|Q6J9Z4|MATK_CYPCL ----> Maturase K


Intron 1 GTGAGTTTGC ... TGCTGTGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A132.1723416656
A232.951168826
A329.1117910542
A431.191508947
A526.17552811
A617.9873266
A723.5624511734
A824.262069042
A924.221837542
A10221797130



>TRINITY_DN44156_c2_g2_i1 from sample A6 / Example spliced isoform
TAAGGCTTCTCCAGACGATCCATATTGTGGATACAGACAAGTGCAGTTGGTAAAGGTGAAGATTGTGGTGGTAAAGAAATGTGGTGGTTCATCGATAAAAAAAGGTATTAAAATTTCTATGTGAAAGAGATTGCAGTATACTTTACAGAAGCAGAGGCATTGGGTGTTCTTGGTTGTCCATGGATGCTTTTTGGTATTGC
AAAGCGGAGTCTGTGCTTGTTATTTCTCA


>TRINITY_DN44156_c2_g2_i2 from sample A6 / Example unspliced isoform:
TAAGGCTTCTCCAGACGATCCATATTGTGGATACAGACAAGTGCAGTTGGTAAAGGTGAAGATTGTGGTGGTAAAGAAATGTGGTGGTTCATCGATAAAAAAAGGTATTAAAATTTCTATGTGAAAGAGATTGCAGTATACTTTACAGAAGCAGAGGCATTGgtgagtttgctttttgttataacttcccgtgtttacac
aacatgcacttgtgcataatactattcgtaagatttttggcatgtcttcagatatttcggtctctctttcatatttctcataagatatttcgatctctctttcataagattttctggtgtgtctaatacttatctatattttgctgtgcag
GGTGTTCTTGGTTGTCCATGGATGCTTTTTGGTATTGCAAAGTGGAGTC
TGTGCTTGTTATTTCTCTGTGTTT




Intron 2 GTAAAACTTG ... GTTTCTAGAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A153.85241728
A243.7527221
A343.1850638
A45035335
A553.8518321
A641.871351
A748.0379673
A852.7851257
A940.7777953
A1044.23871369



>TRINITY_DN44866_c8_g1_i23 from sample A9 / Example spliced isoform
GCACAGCTCAGCCGACCAAATATTTCATTCTTCTAACAGTAACACTGGTAAAAATAAATCCAGGTTACGACGAAATGACATCTGGTGTTGGAGTTGCTTGAAGAAAATCTTTAAGCCGAGGTCAATTCCATTGGCATCAGTTAAGAGAGCGGAAAAGTAGCGGAATGAATCTTCTGCTTGAAATTTTTAGCCGAGAGAGA
TAAATCTTTATATGGCGACACGTTAAAGACTCAAGAACGGCGACCAAGGAGGTGCCGGCCGAGGAATCGAACACGGGACCCGCTGCTTTAGGTCCTACGTGCTTTAAGAATGGCGAGAAGGAAGATTTCAGAAAGAATAGAACACGGGACACGAATCTTTAGGGCGTATATGCTATTTTGAAGGTGCCTGTCTTATATTT
TTCGAAATGTTACCTGCTACTTGCCTACGTTTGGACTCTTGTGGAAGAAGAGGATTCCAATACCCCGCTCTTTCGTCTTTATACTTGAAAGATTATGTATTGCCTTTGAGAATGAATACATTTTTTCGAAGAAAGCGTTGTTTTGTTCTGTGTATACGCCGTTCAAATCTTGGGGCGTTGAAATCCAACCGGTGCCGCTC
GGGGAACCGTTATCCACGATGCAATTGCTATCATGACGATGCCGATGACTTTGAGGATGACGAAGACTACGGTACTATTGACAGTGATGCTGTCAGCTAGACTGCAGTGTTTACTGCTTGTTAGTGATTTTTTGCCCTATTATGCTGTTCAGTTTCGAACCAGGACTTCAGATATCTATTTAAAGAAGGAACTTCATGGA
GTCATTGCAAAGCAACACAATATGGAATTAGATGTAAACCATACCTCATGGGATAGGTGAAATTGATTATGTAATATTGACCCGAAAATGGAAAAGGAAGCACTCAGGATCAATTTTTCAAAGCTGTCTTTTGTCAGCGTTATATTTTCAAATCAGGAAGATAATCCTCAAAACAGTGTATTCTCCGTCCATAACCCCAG
TTCGATTTTTTAGTTTGCTGTTAAAATATTGATTTCTCGCAATGTTGAAAAAGTCGGCATCGGCAAAAAGTCGGCAAGGGTCCCGAATACAACTTCTCGGCAACATCGGCGAAAAAATCGGAAAAAATCGGAAAAAGTCGGCAAACATTAAAAAATACAAAATACATTCATTTTTTTCAGATTTTTAAACATATAACGCA
ACAATAACATCAGATAAACACCTTGGAACATAAATATGGAGAAAGCGCTGATATATAGATGTAGTGGATGCAAATAACTCGGAGCGGTT


>TRINITY_DN44866_c8_g1_i20 from sample A9 / Example unspliced isoform:
GCACAGCTCAGCCGACCAAATATTTCATTCTTCTAACAGTAACACTGGTAAAAATAAATCCAGGTTACGACGAAATGACATCTGGTGTTGGAGTTGCTTGAAGAAAATCTTTAAGCCGAGGTCAATTCCATTGGCATCAGTTAAGAGAGCGGAAAAGTAGCGGAATGAATCTTCTGCTTGAAATTTTTAGCCGgtaaaac
ttgtttttatctaaatttttagtttctgaacggtggtgaatcgattttccattaattaaaattcacagcactctgaaaaacttcttaaaccctgactctggttgcgggcgggaaaatctttattccgcctttgagattgttgaagctgtaaatttctaatttgctcggggattttgtcaaaataatgcccggaatcatct
gtttctagag
AGAGAGATAAATCTTTATATGGCGACACGTTAAAGACTCAAGAACGGCGACCAAGGAGGTGCCGGCCGAGGAATCGAACACGGGACCCGCTGCTTTAGGTCCTACGTGCTTTAAGAATGGCGAGAAGGAAGATTTCAGAAAGAATAGAACACGGGACACGAATCTTTAGGGCGTATATGCTATTTTGAAG
GTGCCTGTCTTATATTTTTCGAAATGTTACCTGCTACTTGCCTACGTTTGGACTCTTGTGGAAGAAGAGGATTCCAATACCCCGCTCTTTCGTCTTTATACTTGAAAGATTATGTATTGCCTTTGAGAATGAATACATTTTTTCGAAGAAAGCGTTGTTTTGTTCTGTGTATACGCCGTTCAAATCTTGGGGCGTTGAAA
TCCAACCGGTGCCGCTCGGGGAACCGTTATCCACGATGCAATTGCTATCATGACGATGCCGATGACTTTGAGGATGACGAAGACTACGGTACTATTGACAGTGATGTGCTTCTACCTGGGGAACACACTTATGTGGATGCTGATAATGCCAAGTCTGCAGAAACAACCTTTTCTTCCACGTCACTGGGTGCATTCTCAGG
ACAATCCTTCCATGAACAAGAACTGAAGCAAGGAAAAACAAAAGCAAATGTTCTTCAAAAGACTGGAAAGAGGTTGGCTAGGAATGGTACGGTGAGGGTTAATTCATTGGGCCTGCACCCTTCCCCTTTGAGGCTACCTCGAAATGAGTGGGAGAAGAGAGCCTTTGAGATCATACGGCAGCAGAAATTAAGAAATATTG
AACTAGAAAGGAAGCGAAGCGAGCAGAAAATATTGCTTGAATCTCCTAAATCTGAAAACATTGACCAGATTATAGAAAGTTCCCAGAGATTAGGCTCCACGAATGCAAACTTGAATTATGAGGTTACAGCTGGAAACATTGAGGATGTTGAATATCAATTGATGGCAAAGCGATTAGGTTTTGAAGCAAAATGGAAACCC
TTGATTCAGTATTTGAGTAGCCTTGGCTTAAATGAGTGTCACTTTGCCCGAATTTATAATAGGCACAAACCTACCCTAAGAACAAAAGTATCATCAGCCCAGGAAAGATTGGATTTCTTACAAAGTGTGGGTGTCAAAACTGAGGATTTGGTGAAAATCATTCTAAAACAACCTCAAATCTTAGGGTATACAATTGAGAA
TAACATAAAACCACATATTGACTTTTTGAGAGGCTTGGGGGTGCCTGATTCCCGGTTAGGACAAATAATAACAGCAAATCCATCTTTCTTTTCTTATAGCTTGGAGTTGTCTCTGAAGCCAAAGGTAAGATTTTTAACCGAGGAAGTTGGCATTAAAAGAACAGACTTGGGGAAAGTTGTGATTCTAGGCCCTGAGATAC
TGAGACAACCTGCTGAAGCCTTGAAATCTCGGTTAGAATTTCTTTCAAAGGAGCTTGGAGCATCAAAGGGAAATCTAGTGAAAATGGTCACAAAGCATCCACAGCTTCTCCACTACAGCATTACCGATGGTATACAGCCACGAATCAATTTTTTGAGGAGCATTGGCATGAATGAGGCTGACATTGTGAAAGTTTTAACA
AGATTACCCCAGATTTTGTCTCTGTCAGTGGAGAAGAATCTGCGCCCCAAATATTTGTATTTAGTCAAAGAACTCGAAAATGGAGTTGAGTCATTATCAGCACACCCCTTATATTTCAGCATATCGCTTAAACAACGCATTTGGCCTCGTCACAGATTCTTGACTTCCCTGAAAAAGGTTACAAACAGACCTTTCCCTAT
AAAAGCCTTACTTGTTAATGATGACTGTTTCTGTAAGCGGTGGGCTGATACAACTCTTCAAGATTACCAGGCATTTCGACAATTGTTACTGGGTGAGTTGGCAGGGGAGGTTTCACAGAAGCAGGGCGTTGACATGTGATTAAATATGGAGCATACAAAATAGCATTACATTTGCAGGTGCTGACATCAAACTGTGTACT
GATGGTAGTCTACAGAAACCATTGCGAGATGAACCTTCTGAGATAGAAGCGTTGTTGGAAACAGAAAGCCTATTGCATTCTGAATAAGCCTCCCAGAATCTCAAAATTCTAAGTAATGATATTGAATCATAACCATGGTGATACCCTTCTGAAAGTATCCTTACATTCGCGACCGTTTTATCCAAAGTTGGAAGTTGTAA
CATTGATGCTAATTGGCTGTCAGCTAGACTGCAGTGTTTACTGCTTGTTAGTGATTTTTTGCCCTATTATGCTGTTCAGTTTCGAACCAGGACTTCAGATATCTATTTAAAGAAGGAACTTCATGGAGTCATTGCAAAGCAACACAATATGGAATTAGATGTAAACCATACCTCATGGGATAGGTGAAATTGATTATGTA
ATATTGACCCGAAAATGGAAAAGGAAGCACTCAGGATCAATTTTTCAAAGCTGTCTTTTGTCAGCGTTATATTTTCAAATCAGGAAGATAATCCTCAAAACAGTGTATTCTCCGTCCATAACCCCAGTTCGATTTTTTAGTTTGCTGTTAAAATATTGATTTCTCGCAATGTTGAAAAAGTCGGCATCGGCAAAAAGTCG
GCAAGGGTCCCGAATACAACTTCTCGGCAACATCGGCGAAAAAATCGGAAAAAATCGGAAAAAGTCGGCAAACATTAAAAAATACAAAATACATTCATTTTTTTCAGATTTTTAAACATATAACGCAACAATAACATCAGATAAACACCTTGGAACATAAATATGGAGAAAGCGCTGATATATAGATGTAGTGGATGCAA
ATAACTCGGAGCGGTT




Intron 3 GTGCTTCTAC ... TGTGTTTCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A161.54153612
A245.05252813
A358.8214364
A437.86322811
A560493
A627.361462486
A739.181116875
A833.9913422116
A930.3918959106
A1036.311077646



>TRINITY_DN44866_c8_g1_i29 from sample A9 / Example spliced isoform
GCACAGCTCAGCCGACCAAATATTTCATTCTTCTAACAGTAACACTGGTAAAAATAAATCCAGGTTACGACGAAATGACATCTGGTGTTGGAGTTGCTTGAAGAAAATCTTTAAGCCGAGGTCAATTCCATTGGCATCAGTTAAGAGAGCGGAAAAGTAGCGGAATGAATCTTCTGCGCCGAGAGAGATAAATCTTTATA
TGGCGACACGTTAAAGACTCAAGAACGGCGACCAAGGAGGTGCCGGCCGAGGAATCGAACACGGGACCCGCTGCTTTAGGTCCTACGTGCTTTAAGAATGGCGAGAAGGAAGATTTCAGAAAGAATAGAACACGGGACACGAATCTTTAGGGCGTATATGCTATTTTGAAGGTGCCTGTCTTATATTTTTCGAAATGTTA
CCTGCTACTTGCCTACGTTTGGACTCTTGTGGAAGAAGAGGATTCCAATACCCCGCTCTTTCGTCTTTATACTTGAAAGATTATGTATTGCCTTTGAGAATGAATACATTTTTTCGAAGAAAGCGTTGTTTTGTTCTGTGTATACGCCGTTCAAATCTTGGGGCGTTGAAATCCAACCGGTGCCGCTCGGGGAACCGTTA
TCCACGATGCAATTGCTATCATGACGATGCCGATGACTTTGAGGATGACGAAGACTACGGTACTATTGACAGTGATGCTGTCAGCTAGACTGCAGTGTTTACTGCTTGTTAGTGATTTTTTGCCCTATTATGCTGTTCAGTTTCGAACCAGGACTTCAGATATCTATTTAAAGAAGGAACTTCATGGAGTCATTGCAAAG
CAACACAATATGGAATTAGATGTAAACCATACCTCATGGGATAGGTGAAATTGATTATGTAATATTGACCCGAAAATGGAAAAGGAAGCACTCAGGATCAATTTTTCAAAGCTGTCTTTTGTCAGCGTTATATTTTCAAATCAGGAAGATAATCCTCAAAACAGTGTATTCTCCGTCCATAACCCCAGTTCGATTTTTTA
GTTTGCTGTTAAAATATTGATTTCTCGCAATGTTGAAAAAGTCGGCATCGGCAAAAAGTCGGCAAGGGTCCCGAATACAACTTCTCGGCAACATCGGCGAAAAAATCGGAAAAAATCGGAAAAAGTCGGCAAACATTAAAAAATACAAAATACATTCATTTTTTTCAGATTTTTAAACATATAACGCAACAATAACATCA
GATAAACACCTTGGAACATAAATATGGAGAAAGCGCTGATATATAGATGTAGTGGATGCAAATAACTCGGAGCGGTT


>TRINITY_DN44866_c8_g1_i11 from sample A9 / Example unspliced isoform:
GCACAGCTCAGCCGACCAAATATTTCATTCTTCTAACAGTAACACTGGTAAAAATAAATCCAGGTTACGACGAAATGACATCTGGTGTTGGAGTTGCTTGAAGAAAATCTTTAAGCCGAGGTCAATTCCATTGGCATCAGTTAAGAGAGCGGAAAAGTAGCGGAATGAATCTTCTGCGCCGAGAGAGATAAATCTTTATA
TGGCGACACGTTAAAGACTCAAGAACGGCGACCAAGGAGGTGCCGGCCGAGGAATCGAACACGGGACCCGCTGCTTTAGGTCCTACGTGCTTTAAGAATGGCGAGAAGGAAGATTTCAGAAAGAATAGAACACGGGACACGAATCTTTAGGGCGTATATGCTATTTTGAAGGTGCCTGTCTTATATTTTTCGAAATGTTA
CCTGCTACTTGCCTACGTTTGGACTCTTGTGGAAGAAGAGGATTCCAATACCCCGCTCTTTCGTCTTTATACTTGAAAGATTATGTATTGCCTTTGAGAATGAATACATTTTTTCGAAGAAAGCGTTGTTTTGTTCTGTGTATACGCCGTTCAAATCTTGGGGCGTTGAAATCCAACCGGTGCCGCTCGGGGAACCGTTA
TCCACGATGCAATTGCTATCATGACGATGCCGATGACTTTGAGGATGACGAAGACTACGGTACTATTGACAGTGATgtgcttctacctggggaacacacttatgtggatgctgataatgccaagtctgcagaaacaaccttttcttccacgtcactgggtgcattctcaggacaatccttccatgaacaagaactgaagc
aaggaaaaacaaaagcaaatgttcttcaaaagactggaaagaggttggctaggaatggtacggtgagggttaattcattgggcctgcacccttcccctttgaggctacctcgaaatgagtgggagaagagagcctttgagatcatacggcagcagaaattaagaaatattgaactagaaaggaagcgaagcgagcagaaa
atattgcttgaatctcctaaatctgaaaacattgaccagattatagaaagttcccagagattaggctccacgaatgcaaacttgaattatgaggttacagctggaaacattgaggatgttgaatatcaattgatggcaaagcgattaggttttgaagcaaaatggaaacccttgattcagtatttgagtagccttggctt
aaatgagtgtcactttgcccgaatttataataggcacaaacctaccctaagaacaaaagtatcatcagcccaggaaagattggatttcttacaaagtgtgggtgtcaaaactgaggatttggtgaaaatcattctaaaacaacctcaaatcttagggtatacaattgagaataacataaaaccacatattgactttttga
gaggcttgggggtgcctgattcccggttaggacaaataataacagcaaatccatctttcttttcttatagcttggagttgtctctgaagccaaaggtaagatttttaaccgaggaagttggcattaaaagaacagacttggggaaagttgtgattctaggccctgagatactgagacaacctgctgaagccttgaaatct
cggttagaatttctttcaaaggagcttggagcatcaaagggaaatctagtgaaaatggtcacaaagcatccacagcttctccactacagcattaccgatggtatacagccacgaatcaattttttgaggagcattggcatgaatgaggctgacattgtgaaagttttaacaagattaccccaggtgatttttcatttctc
cagctgatttatttgaggttttcaatgcgtaaggtatacttccatattcctaagcatatatcaattatttcccatattcctaagcatatgaaatgtatgcttttgtttctctgtacaccgaggttgacaatattattcattctaagcagattttgtctctgtcagtggagaagaatctgcgccccaaatatttgtattta
gtcaaagaactcgaaaatggagttgagtcattatcagcacaccccttatatttcagcatatcgcttaaacaacgcatttggcctcgtcacagattcttgacttccctgaaaaaggttacaaacagacctttccctataaaagccttacttgttaatgatgactgtttctgtaagcggtgggctgatacaactcttcaaga
ttaccaggcatttcgacaattgttactgggtgagttggcaggggaggtttcacagaagcagggcgttgacatgtgattaaatatggagcatacaaaatagcattacatttgcaggtgctgacatcaaactgtgtactgatggtagtctacagaaaccattgcgagatgaaccttctgagatagaagcgttgttggaaaca
gaaagcctattgcattctgaataagcctcccagaatctcaaaattctaagtaatgatattgaatcataaccatggtgatacccttctgaaagtatccttacattcgcgaccgttttatccaaagttggaagttgtaacattgatgctaattggtaagttcattgcaagtcttactaaacaatttctatatttctgtgaca
tcaaacagtggaaaatcttgacattatatcttaaatttgtgacaccaaaaggtattttattctacatgctgactggtgtttggttctgtgtttcag
GCTGTCAGCTAGACTGCAGTGTTTACTGCTTGTTAGTGATTTTTTGCCCTATTATGCTGTTCAGTTTCGAACCAGGACTTCAGATATCTATTTAAAGAAGGAAC
TTCATGGAGTCATTGCAAAGCAACACAATATGGAATTAGATGTAAACCATACCTCATGGGATAGGTGAAATTGATTATGTAATATTGACCCGAAAATGGAAAAGGAAGCACTCAGGATCAATTTTTCAAAGCTGTCTTTTGTCAGCGTTATATTTTCAAATCAGGAAGATAATCCTCAAAACAGTGTATTCTCCGTCCAT
AACCCCAGTTCGATTTTTTAGTTTGCTGTTAAAATATTGATTTCTCGCAATGTTGAAAAAGTCGGCATCGGCAAAAAGTCGGCAAGGGTCCCGAATACAACTTCTCGGCAACATCGGCGAAAAAATCGGAAAAAATCGGAAAAAGTCGGCAAACATTAAAAAATACAAAATACATTCATTTTTTTCAGATTTTTAAACAT
ATAACGCAACAATAACATCAGATAAACACCTTGGAACATAAATATGGAGAAAGCGCTGATATATAGATGTAGTGGATGCAAATAACTCGGAGCGGTT




Intron 4 GTGAAGATTG ... TGCAATTCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A170.52139.5267356
A271.8102.5184290
A365.41133177295
A470.97122244326
A567.0643.57796
A676.5311.52235
A765.877690125
A868.8356.5113126
A967.4852.58198
A1064.7649.55897



>TRINITY_DN48608_c2_g2_i4 from sample A10 / Example spliced isoform
GTACTTAATTTTGCGTAAGTGTTATGGGCTTTGCTGAATATTTTTCTTAATATATATCATGTATTTGTTTAATAATAATTACGAGATTTTTTGCTTTGTATTTAACATTTTATGGTTTGGTTGTTGTTGGGTTCAGTGGTTGGGGAATTTAAGGCTTCTCCAGACATCTCATATCATGGATATAGACAAGTGCAGTGGGT
GAAG
GTAAAGAAATGTGGTGGTTCAT


>TRINITY_DN48608_c2_g2_i21 from sample A10 / Example unspliced isoform:
AGATATTTGGTCTCTGATCGGTCTCTCTTTCATATTTCTCATAAGATATTTGGTGTGTATTTAATATGTTATAATTTTAGGGTTCCATGTTTTGATTTAACTCATTTGCAGCTTCTTAATTTTATCATGTATGTTTGTTTAAATTTAGAGGCAATGCGAGTAAAGGAAGGTATTTGGAATCTCAAAACATCAACAAGACT
TGCCTGTAGTTGAGTAGAGTTTCAAATATGCAACTTTTGGCCTTTGCTGGTTGGGGAATTTAAGGCTTCTCCAGACATCTCATATCATGGATATAGACAAGTGCAGTGGGTGAAGgtgaagattgaggttccatgcttgtttgataaattatagacatcttatattatttatcatttatttaattaatgagtccaatgca
attcag
GTAAAGAAATGTGGTGGTTCATTGATAAAAAAACTATTGAAATATCTATGTGAGAGATATTTTAGTATACTGTGTAGAAGCAAAGGCGTTGGGTGTTCTTGGTTGGCCTTGGATGCTTTTTGGTGTTACAG




Intron 5 GTAAGTTCAT ... TGTGTTTCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A14018912
A239.3920113
A336.36724
A442.3115111
A537.5503
A644.56107486
A740.76109975
A840.716930116
A937.9917324106
A1041.0766646



>TRINITY_DN44866_c8_g1_i21 from sample A9 / Example spliced isoform
GCACAGCTCAGCCGACCAAATATTTCATTCTTCTAACAGTAACACTGGTAAAAATAAATCCAGGTTACGACGAAATGACATCTGGTGTTGGAGTTGCTTGAAGAAAATCTTTAAGCCGAGGTCAATTCCATTGGCATCAGTTAAGAGAGCGGAAAAGTAGCGGAATGAATCTTCTGCTTGAAATTTTTAGCCGAGAGAGA
TAAATCTTTATATGGCGACACGTTAAAGACTCAAGAACGGCGACCAAGGAGGTGCCGGCCGAGGAATCGAACACGGGACCCGCTGCTTTAGGTCCTACGTGCTTTAAGAATGGCGAGAAGGAAGATTTCAGAAAGAATAGAACACGGGACACGAATCTTTAGGGCGTATATGCTATTTTGAAGGTGCCTGTCTTATATTT
TTCGAAATGTTACCTGCTACTTGCCTACGTTTGGACTCTTGTGGAAGAAGAGGATTCCAATACCCCGCTCTTTCGTCTTTATACTTGAAAGATTATGTATTGCCTTTGAGAATGAATACATTTTTTCGAAGAAAGCGTTGTTTTGTTCTGTGTATACGCCGTTCAAATCTTGGGGCGTTGAAATCCAACCGGTGCCGCTC
GGGGAACCGTTATCCACGATGCAATTGCTATCATGACGATGCCGATGACTTTGAGGATGACGAAGACTACGGTACTATTGACAGTGATGTGCTTCTACCTGGGGAACACACTTATGTGGATGCTGATAATGCCAAGTCTGCAGAAACAACCTTTTCTTCCACGTCACTGGGTGCATTCTCAGGACAATCCTTCCATGAAC
AAGAACTGAAGCAAGGAAAAACAAAAGCAAATGTTCTTCAAAAGACTGGAAAGAGGTTGGCTAGGAATGGTACGGTGAGGGTTAATTCATTGGGCCTGCACCCTTCCCCTTTGAGGCTACCTCGAAATGAGTGGGAGAAGAGAGCCTTTGAGATCATACGGCAGCAGAAATTAAGAAATATTGAACTAGAAAGGAAGCGA
AGCGAGCAGAAAATATTGCTTGAATCTCCTAAATCTGAAAACATTGACCAGATTATAGAAAGTTCCCAGAGATTAGGCTCCACGAATGCAAACTTGAATTATGAGGTTACAGCTGGAAACATTGAGGATGTTGAATATCAATTGATGGCAAAGCGATTAGGTTTTGAAGCAAAATGGAAACCCTTGATTCAGTATTTGAG
TAGCCTTGGCTTAAATGAGTGTCACTTTGCCCGAATTTATAATAGGCACAAACCTACCCTAAGAACAAAAGTATCATCAGCCCAGGAAAGATTGGATTTCTTACAAAGTGTGGGTGTCAAAACTGAGGATTTGGTGAAAATCATTCTAAAACAACCTCAAATCTTAGGGTATACAATTGAGAATAACATAAAACCACATA
TTGACTTTTTGAGAGGCTTGGGGGTGCCTGATTCCCGGTTAGGACAAATAATAACAGCAAATCCATCTTTCTTTTCTTATAGCTTGGAGTTGTCTCTGAAGCCAAAGGTAAGATTTTTAACCGAGGAAGTTGGCATTAAAAGAACAGACTTGGGGAAAGTTGTGATTCTAGGCCCTGAGATACTGAGACAACCTGCTGAA
GCCTTGAAATCTCGGTTAGAATTTCTTTCAAAGGAGCTTGGAGCATCAAAGGGAAATCTAGTGAAAATGGTCACAAAGCATCCACAGCTTCTCCACTACAGCATTACCGATGGTATACAGCCACGAATCAATTTTTTGAGGAGCATTGGCATGAATGAGGCTGACATTGTGAAAGTTTTAACAAGATTACCCCAGGTGAT
TTTTCATTTCTCCAGCTGATTTATTTGAGGTTTTCAATGCGTAAGGTATACTTCCATATTCCTAAGCATATATCAATTATTTCCCATATTCCTAAGCATATGAAATGTATGCTTTTGTTTCTCTGTACACCGAGGTTGACAATATTATTCATTCTAAGCAGATTTTGTCTCTGTCAGTGGAGAAGAATCTGCGCCCCAAA
TATTTGTATTTAGTCAAAGAACTCGAAAATGGAGTTGAGTCATTATCAGCACACCCCTTATATTTCAGCATATCGCTTAAACAACGCATTTGGCCTCGTCACAGATTCTTGACTTCCCTGAAAAAGGTTACAAACAGACCTTTCCCTATAAAAGCCTTACTTGTTAATGATGACTGTTTCTGTAAGCGGTGGGCTGATAC
AACTCTTCAAGATTACCAGGCATTTCGACAATTGTTACTGGGTGAGTTGGCAGGGGAGGTTTCACAGAAGCAGGGCGTTGACATGTGATTAAATATGGAGCATACAAAATAGCATTACATTTGCAGGTGCTGACATCAAACTGTGTACTGATGGTAGTCTACAGAAACCATTGCGAGATGAACCTTCTGAGATAGAAGCG
TTGTTGGAAACAGAAAGCCTATTGCATTCTGAATAAGCCTCCCAGAATCTCAAAATTCTAAGTAATGATATTGAATCATAACCATGGTGATACCCTTCTGAAAGTATCCTTACATTCGCGACCGTTTTATCCAAAGTTGGAAGTTGTAACATTGATGCTAATTGGCTGTCAGCTAGACTGCAGTGTTTACTGCTTGTTAG
TGATTTTTTGCCCTATTATGCTGTTCAGTTTCGAACCAGGACTTCAGATATCTATTTAAAGAAGGAACTTCATGGAGTCATTGCAAAGCAACACAATATGGAATTAGATGTAAACCATACCTCATGGGATAGGTGAAATTGATTATGTAATATTGACCCGAAAATGGAAAAGGAAGCACTCAGGATCAATTTTTCAAAGC
TGTCTTTTGTCAGCGTTATATTTTCAAATCAGGAAGATAATCCTCAAAACAGTGTATTCTCCGTCCATAACCCCAGTTCGATTTTTTAGTTTGCTGTTAAAATATTGATTTCTCGCAATGTTGAAAAAGTCGGCATCGGCAAAAAGTCGGCAAGGGTCCCGAATACAACTTCTCGGCAACATCGGCGAAAAAATCGGAAA
AAATCGGAAAAAGTCGGCAAACATTAAAAAATACAAAATACATTCATTTTTTTCAGATTTTTAAACATATAACGCAACAATAACATCAGATAAACACCTTGGAACATAAATATGGAGAAAGCGCTGATATATAGATGTAGTGGATGCAAATAACTCGGAGCGGTT


>TRINITY_DN44866_c8_g1_i11 from sample A9 / Example unspliced isoform:
GCACAGCTCAGCCGACCAAATATTTCATTCTTCTAACAGTAACACTGGTAAAAATAAATCCAGGTTACGACGAAATGACATCTGGTGTTGGAGTTGCTTGAAGAAAATCTTTAAGCCGAGGTCAATTCCATTGGCATCAGTTAAGAGAGCGGAAAAGTAGCGGAATGAATCTTCTGCGCCGAGAGAGATAAATCTTTATA
TGGCGACACGTTAAAGACTCAAGAACGGCGACCAAGGAGGTGCCGGCCGAGGAATCGAACACGGGACCCGCTGCTTTAGGTCCTACGTGCTTTAAGAATGGCGAGAAGGAAGATTTCAGAAAGAATAGAACACGGGACACGAATCTTTAGGGCGTATATGCTATTTTGAAGGTGCCTGTCTTATATTTTTCGAAATGTTA
CCTGCTACTTGCCTACGTTTGGACTCTTGTGGAAGAAGAGGATTCCAATACCCCGCTCTTTCGTCTTTATACTTGAAAGATTATGTATTGCCTTTGAGAATGAATACATTTTTTCGAAGAAAGCGTTGTTTTGTTCTGTGTATACGCCGTTCAAATCTTGGGGCGTTGAAATCCAACCGGTGCCGCTCGGGGAACCGTTA
TCCACGATGCAATTGCTATCATGACGATGCCGATGACTTTGAGGATGACGAAGACTACGGTACTATTGACAGTGATGTGCTTCTACCTGGGGAACACACTTATGTGGATGCTGATAATGCCAAGTCTGCAGAAACAACCTTTTCTTCCACGTCACTGGGTGCATTCTCAGGACAATCCTTCCATGAACAAGAACTGAAGC
AAGGAAAAACAAAAGCAAATGTTCTTCAAAAGACTGGAAAGAGGTTGGCTAGGAATGGTACGGTGAGGGTTAATTCATTGGGCCTGCACCCTTCCCCTTTGAGGCTACCTCGAAATGAGTGGGAGAAGAGAGCCTTTGAGATCATACGGCAGCAGAAATTAAGAAATATTGAACTAGAAAGGAAGCGAAGCGAGCAGAAA
ATATTGCTTGAATCTCCTAAATCTGAAAACATTGACCAGATTATAGAAAGTTCCCAGAGATTAGGCTCCACGAATGCAAACTTGAATTATGAGGTTACAGCTGGAAACATTGAGGATGTTGAATATCAATTGATGGCAAAGCGATTAGGTTTTGAAGCAAAATGGAAACCCTTGATTCAGTATTTGAGTAGCCTTGGCTT
AAATGAGTGTCACTTTGCCCGAATTTATAATAGGCACAAACCTACCCTAAGAACAAAAGTATCATCAGCCCAGGAAAGATTGGATTTCTTACAAAGTGTGGGTGTCAAAACTGAGGATTTGGTGAAAATCATTCTAAAACAACCTCAAATCTTAGGGTATACAATTGAGAATAACATAAAACCACATATTGACTTTTTGA
GAGGCTTGGGGGTGCCTGATTCCCGGTTAGGACAAATAATAACAGCAAATCCATCTTTCTTTTCTTATAGCTTGGAGTTGTCTCTGAAGCCAAAGGTAAGATTTTTAACCGAGGAAGTTGGCATTAAAAGAACAGACTTGGGGAAAGTTGTGATTCTAGGCCCTGAGATACTGAGACAACCTGCTGAAGCCTTGAAATCT
CGGTTAGAATTTCTTTCAAAGGAGCTTGGAGCATCAAAGGGAAATCTAGTGAAAATGGTCACAAAGCATCCACAGCTTCTCCACTACAGCATTACCGATGGTATACAGCCACGAATCAATTTTTTGAGGAGCATTGGCATGAATGAGGCTGACATTGTGAAAGTTTTAACAAGATTACCCCAGGTGATTTTTCATTTCTC
CAGCTGATTTATTTGAGGTTTTCAATGCGTAAGGTATACTTCCATATTCCTAAGCATATATCAATTATTTCCCATATTCCTAAGCATATGAAATGTATGCTTTTGTTTCTCTGTACACCGAGGTTGACAATATTATTCATTCTAAGCAGATTTTGTCTCTGTCAGTGGAGAAGAATCTGCGCCCCAAATATTTGTATTTA
GTCAAAGAACTCGAAAATGGAGTTGAGTCATTATCAGCACACCCCTTATATTTCAGCATATCGCTTAAACAACGCATTTGGCCTCGTCACAGATTCTTGACTTCCCTGAAAAAGGTTACAAACAGACCTTTCCCTATAAAAGCCTTACTTGTTAATGATGACTGTTTCTGTAAGCGGTGGGCTGATACAACTCTTCAAGA
TTACCAGGCATTTCGACAATTGTTACTGGGTGAGTTGGCAGGGGAGGTTTCACAGAAGCAGGGCGTTGACATGTGATTAAATATGGAGCATACAAAATAGCATTACATTTGCAGGTGCTGACATCAAACTGTGTACTGATGGTAGTCTACAGAAACCATTGCGAGATGAACCTTCTGAGATAGAAGCGTTGTTGGAAACA
GAAAGCCTATTGCATTCTGAATAAGCCTCCCAGAATCTCAAAATTCTAAGTAATGATATTGAATCATAACCATGGTGATACCCTTCTGAAAGTATCCTTACATTCGCGACCGTTTTATCCAAAGTTGGAAGTTGTAACATTGATGCTAATTGgtaagttcattgcaagtcttactaaacaatttctatatttctgtgaca
tcaaacagtggaaaatcttgacattatatcttaaatttgtgacaccaaaaggtattttattctacatgctgactggtgtttggttctgtgtttcag
GCTGTCAGCTAGACTGCAGTGTTTACTGCTTGTTAGTGATTTTTTGCCCTATTATGCTGTTCAGTTTCGAACCAGGACTTCAGATATCTATTTAAAGAAGGAAC
TTCATGGAGTCATTGCAAAGCAACACAATATGGAATTAGATGTAAACCATACCTCATGGGATAGGTGAAATTGATTATGTAATATTGACCCGAAAATGGAAAAGGAAGCACTCAGGATCAATTTTTCAAAGCTGTCTTTTGTCAGCGTTATATTTTCAAATCAGGAAGATAATCCTCAAAACAGTGTATTCTCCGTCCAT
AACCCCAGTTCGATTTTTTAGTTTGCTGTTAAAATATTGATTTCTCGCAATGTTGAAAAAGTCGGCATCGGCAAAAAGTCGGCAAGGGTCCCGAATACAACTTCTCGGCAACATCGGCGAAAAAATCGGAAAAAATCGGAAAAAGTCGGCAAACATTAAAAAATACAAAATACATTCATTTTTTTCAGATTTTTAAACAT
ATAACGCAACAATAACATCAGATAAACACCTTGGAACATAAATATGGAGAAAGCGCTGATATATAGATGTAGTGGATGCAAATAACTCGGAGCGGTT




Intron 6 GTATAGTTGA ... TTCTTTTCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A127.41492116
A231.3423156
A327.08351313
A423.532697
A521.431142
A624.321436
A733.76522627
A831.34462022
A928.74622921
A1027.37652821



>TRINITY_DN44866_c8_g1_i21 from sample A9 / Example spliced isoform
GCACAGCTCAGCCGACCAAATATTTCATTCTTCTAACAGTAACACTGGTAAAAATAAATCCAGGTTACGACGAAATGACATCTGGTGTTGGAGTTGCTTGAAGAAAATCTTTAAGCCGAGGTCAATTCCATTGGCATCAGTTAAGAGAGCGGAAAAGTAGCGGAATGAATCTTCTGCTTGAAATTTTTAGCCGAGAGAGA
TAAATCTTTATATGGCGACACGTTAAAGACTCAAGAACGGCGACCAAGGAGGTGCCGGCCGAGGAATCGAACACGGGACCCGCTGCTTTAGGTCCTACGTGCTTTAAGAATGGCGAGAAGGAAGATTTCAGAAAGAATAGAACACGGGACACGAATCTTTAGGGCGTATATGCTATTTTGAAGGTGCCTGTCTTATATTT
TTCGAAATGTTACCTGCTACTTGCCTACGTTTGGACTCTTGTGGAAGAAGAGGATTCCAATACCCCGCTCTTTCGTCTTTATACTTGAAAGATTATGTATTGCCTTTGAGAATGAATACATTTTTTCGAAGAAAGCGTTGTTTTGTTCTGTGTATACGCCGTTCAAATCTTGGGGCGTTGAAATCCAACCGGTGCCGCTC
GGGGAACCGTTATCCACGATGCAATTGCTATCATGACGATGCCGATGACTTTGAGGATGACGAAGACTACGGTACTATTGACAGTGATGTGCTTCTACCTGGGGAACACACTTATGTGGATGCTGATAATGCCAAGTCTGCAGAAACAACCTTTTCTTCCACGTCACTGGGTGCATTCTCAGGACAATCCTTCCATGAAC
AAGAACTGAAGCAAGGAAAAACAAAAGCAAATGTTCTTCAAAAGACTGGAAAGAGGTTGGCTAGGAATGGTACGGTGAGGGTTAATTCATTGGGCCTGCACCCTTCCCCTTTGAGGCTACCTCGAAATGAGTGGGAGAAGAGAGCCTTTGAGATCATACGGCAGCAGAAATTAAGAAATATTGAACTAGAAAGGAAGCGA
AGCGAGCAGAAAATATTGCTTGAATCTCCTAAATCTGAAAACATTGACCAGATTATAGAAAGTTCCCAGAGATTAGGCTCCACGAATGCAAACTTGAATTATGAGGTTACAGCTGGAAACATTGAGGATGTTGAATATCAATTGATGGCAAAGCGATTAGGTTTTGAAGCAAAATGGAAACCCTTGATTCAGTATTTGAG
TAGCCTTGGCTTAAATGAGTGTCACTTTGCCCGAATTTATAATAGGCACAAACCTACCCTAAGAACAAAAGTATCATCAGCCCAGGAAAGATTGGATTTCTTACAAAGTGTGGGTGTCAAAACTGAGGATTTGGTGAAAATCATTCTAAAACAACCTCAAATCTTAGGGTATACAATTGAGAATAACATAAAACCACATA
TTGACTTTTTGAGAGGCTTGGGGGTGCCTGATTCCCGGTTAGGACAAATAATAACAGCAAATCCATCTTTCTTTTCTTATAGCTTGGAGTTGTCTCTGAAGCCAAAGGTAAGATTTTTAACCGAGGAAGTTGGCATTAAAAGAACAGACTTGGGGAAAGTTGTGATTCTAGGCCCTGAGATACTGAGACAACCTGCTGAA
GCCTTGAAATCTCGGTTAGAATTTCTTTCAAAGGAGCTTGGAGCATCAAAGGGAAATCTAGTGAAAATGGTCACAAAGCATCCACAGCTTCTCCACTACAGCATTACCGATGGTATACAGCCACGAATCAATTTTTTGAGGAGCATTGGCATGAATGAGGCTGACATTGTGAAAGTTTTAACAAGATTACCCCAGGTGAT
TTTTCATTTCTCCAGCTGATTTATTTGAGGTTTTCAATGCGTAAGGTATACTTCCATATTCCTAAGCATATATCAATTATTTCCCATATTCCTAAGCATATGAAATGTATGCTTTTGTTTCTCTGTACACCGAGGTTGACAATATTATTCATTCTAAGCAGATTTTGTCTCTGTCAGTGGAGAAGAATCTGCGCCCCAAA
TATTTGTATTTAGTCAAAGAACTCGAAAATGGAGTTGAGTCATTATCAGCACACCCCTTATATTTCAGCATATCGCTTAAACAACGCATTTGGCCTCGTCACAGATTCTTGACTTCCCTGAAAAAGGTTACAAACAGACCTTTCCCTATAAAAGCCTTACTTGTTAATGATGACTGTTTCTGTAAGCGGTGGGCTGATAC
AACTCTTCAAGATTACCAGGCATTTCGACAATTGTTACTGGGTGAGTTGGCAGGGGAGGTTTCACAGAAGCAGGGCGTTGACATGTGATTAAATATGGAGCATACAAAATAGCATTACATTTGCAGGTGCTGACATCAAACTGTGTACTGATGGTAGTCTACAGAAACCATTGCGAGATGAACCTTCTGAGATAGAAGCG
TTGTTGGAAACAGAAAGCCTATTGCATTCTGAATAAGCCTCCCAGAATCTCAAAATTCTAAGTAATGATATTGAATCATAACCATGGTGATACCCTTCTGAAAGTATCCTTACATTCGCGACCGTTTTATCCAAAGTTGGAAGTTGTAACATTGATGCTAATTGGCTGTCAGCTAGACTGCAGTGTTTACTGCTTGTTAG
TGATTTTTTGCCCTATTATGCTGTTCAGTTTCGAACCAGGACTTCAGATATCTATTTAAAGAAGGAACTTCATGGAGTCATTGCAAAGCAACACAATATGGAATTAGATGTAAACCATACCTCATGGGATAGGTGAAATTGATTATGTAATATTGACCCGAAAATGGAAAAGGAAGCACTCAGGATCAATTTTTCAAAGC
TGTCTTTTGTCAGCGTTATATTTTCAAATCAGGAAGATAATCCTCAAAACAGTGTATTCTCCGTCCATAACCCCAGTTCGATTTTTTAGTTTGCTGTTAAAATATTGATTTCTCGCAATGTTGAAAAAGTCGGCATCGGCAAAAAGTCGGCAAGGGTCCCGAATACAACTTCTCGGCAACATCGGCGAAAAAATCGGAAA
AAATCGGAAAAAGTCGGCAAACATTAAAAAATACAAAATACATTCATTTTTTTCAGATTTTTAAACATATAACGCAACAATAACATCAGATAAACACCTTGGAACATAAATATGGAGAAAGCGCTGATATATAGATGTAGTGGATGCAAATAACTCGGAGCGGTT


>TRINITY_DN44866_c8_g1_i9 from sample A9 / Example unspliced isoform:
GCACAGCTCAGCCGACCAAATATTTCATTCTTCTAACAGTAACACTGGTAAAAATAAATCCAGGTTACGACGAAATGACATCTGGTGTTGGAGTTGCTTGAAGAAAATCTTTAAGCCGAGGTCAATTCCATTGGCATCAGTTAAGAGAGCGGAAAAGTAGCGGAATGAATCTTCTGCGCCGAGAGAGATAAATCTTTATA
TGGCGACACGTTAAAGACTCAAGAACGGCGACCAAGGAGGTGCCGGCCGAGGAATCGAACACGGGACCCGCTGCTTTAGGTCCTACGTGCTTTAAGAATGGCGAGAAGGAAGATTTCAGAAAGAATAGAACACGGGACACGAATCTTTAGGGCGTATATGCTATTTTGAAGGTGCCTGTCTTATATTTTTCGAAATGTTA
CCTGCTACTTGCCTACGTTTGGACTCTTGTGGAAGAAGAGGATTCCAATACCCCGCTCTTTCGTCTTTATACTTGAAAGATTATGTATTGCCTTTGAGAATGAATACATTTTTTCGAAGAAAGCGTTGTTTTGTTCTGTGTATACGCCGTTCAAATCTTGGGGCGTTGAAATCCAACCGGTGCCGCTCGGGGAACCGTTA
TCCACGATGCAATTGCTATCATGACGATGCCGATGACTTTGAGGATGACGAAGACTACGGTACTATTGACAGTGATGTGCTTCTACCTGGGGAACACACTTATGTGGATGCTGATAATGCCAAGTCTGCAGAAACAACCTTTTCTTCCACGTCACTGGGTGCATTCTCAGGACAATCCTTCCATGAACAAGAACTGAAGC
AAGGAAAAACAAAAGCAAATGTTCTTCAAAAGACTGGAAAGAGGTTGGCTAGGAATGGTACGGTGAGGGTTAATTCATTGGGCCTGCACCCTTCCCCTTTGAGGCTACCTCGAAATGAGTGGGAGAAGAGAGCCTTTGAGATCATACGGCAGCAGAAATTAAGAAATATTGAACTAGAAAGGAAGCGAAGCGAGCAGAAA
ATATTGCTTGAATCTCCTAAATCTGAAAACATTGACCAGATTATAGAAAGTTCCCAGAGATTAGGCTCCACGAATGCAAACTTGAATTATGAGgtatagttgaaatttcgcaaattgctaaatgcgacagacttttcatcctccaattattttctatccatgtgggtcttatgcaattacatgttcaatgtttttccctg
ttggaaggttgaagactggtttgccttttttaatttcttttcag
GTTACAGCTGGAAACATTGAGGATGTTGAATATCAATTGATGGCAAAGCGATTAGGTTTTGAAGCAAAATGGAAACCCTTGATTCAGTATTTGAGTAGCCTTGGCTTAAATGAGTGTCACTTTGCCCGAATTTATAATAGGCACAAACCTACCCTA
AGAACAAAAGTATCATCAGCCCAGGAAAGATTGGATTTCTTACAAAGTGTGGGTGTCAAAACTGAGGATTTGGTGAAAATCATTCTAAAACAACCTCAAATCTTAGGGTATACAATTGAGAATAACATAAAACCACATATTGACTTTTTGAGAGGCTTGGGGGTGCCTGATTCCCGGTTAGGACAAATAATAACAGCAAA
TCCATCTTTCTTTTCTTATAGCTTGGAGTTGTCTCTGAAGCCAAAGGTAAGATTTTTAACCGAGGAAGTTGGCATTAAAAGAACAGACTTGGGGAAAGTTGTGATTCTAGGCCCTGAGATACTGAGACAACCTGCTGAAGCCTTGAAATCTCGGTTAGAATTTCTTTCAAAGGAGCTTGGAGCATCAAAGGGAAATCTAG
TGAAAATGGTCACAAAGCATCCACAGCTTCTCCACTACAGCATTACCGATGGTATACAGCCACGAATCAATTTTTTGAGGAGCATTGGCATGAATGAGGCTGACATTGTGAAAGTTTTAACAAGATTACCCCAG




Intron 7 GTGATTTTTC ... TTCTAAGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A138.2421197
A229.0322711
A316.132673
A444.44535
A535.481056
A636854
A728.9343278
A841.56454618
A923.36411510
A1030.56501628



>TRINITY_DN44866_c8_g1_i20 from sample A9 / Example spliced isoform
GCACAGCTCAGCCGACCAAATATTTCATTCTTCTAACAGTAACACTGGTAAAAATAAATCCAGGTTACGACGAAATGACATCTGGTGTTGGAGTTGCTTGAAGAAAATCTTTAAGCCGAGGTCAATTCCATTGGCATCAGTTAAGAGAGCGGAAAAGTAGCGGAATGAATCTTCTGCTTGAAATTTTTAGCCGGTAAAAC
TTGTTTTTATCTAAATTTTTAGTTTCTGAACGGTGGTGAATCGATTTTCCATTAATTAAAATTCACAGCACTCTGAAAAACTTCTTAAACCCTGACTCTGGTTGCGGGCGGGAAAATCTTTATTCCGCCTTTGAGATTGTTGAAGCTGTAAATTTCTAATTTGCTCGGGGATTTTGTCAAAATAATGCCCGGAATCATCT
GTTTCTAGAGAGAGAGATAAATCTTTATATGGCGACACGTTAAAGACTCAAGAACGGCGACCAAGGAGGTGCCGGCCGAGGAATCGAACACGGGACCCGCTGCTTTAGGTCCTACGTGCTTTAAGAATGGCGAGAAGGAAGATTTCAGAAAGAATAGAACACGGGACACGAATCTTTAGGGCGTATATGCTATTTTGAAG
GTGCCTGTCTTATATTTTTCGAAATGTTACCTGCTACTTGCCTACGTTTGGACTCTTGTGGAAGAAGAGGATTCCAATACCCCGCTCTTTCGTCTTTATACTTGAAAGATTATGTATTGCCTTTGAGAATGAATACATTTTTTCGAAGAAAGCGTTGTTTTGTTCTGTGTATACGCCGTTCAAATCTTGGGGCGTTGAAA
TCCAACCGGTGCCGCTCGGGGAACCGTTATCCACGATGCAATTGCTATCATGACGATGCCGATGACTTTGAGGATGACGAAGACTACGGTACTATTGACAGTGATGTGCTTCTACCTGGGGAACACACTTATGTGGATGCTGATAATGCCAAGTCTGCAGAAACAACCTTTTCTTCCACGTCACTGGGTGCATTCTCAGG
ACAATCCTTCCATGAACAAGAACTGAAGCAAGGAAAAACAAAAGCAAATGTTCTTCAAAAGACTGGAAAGAGGTTGGCTAGGAATGGTACGGTGAGGGTTAATTCATTGGGCCTGCACCCTTCCCCTTTGAGGCTACCTCGAAATGAGTGGGAGAAGAGAGCCTTTGAGATCATACGGCAGCAGAAATTAAGAAATATTG
AACTAGAAAGGAAGCGAAGCGAGCAGAAAATATTGCTTGAATCTCCTAAATCTGAAAACATTGACCAGATTATAGAAAGTTCCCAGAGATTAGGCTCCACGAATGCAAACTTGAATTATGAGGTTACAGCTGGAAACATTGAGGATGTTGAATATCAATTGATGGCAAAGCGATTAGGTTTTGAAGCAAAATGGAAACCC
TTGATTCAGTATTTGAGTAGCCTTGGCTTAAATGAGTGTCACTTTGCCCGAATTTATAATAGGCACAAACCTACCCTAAGAACAAAAGTATCATCAGCCCAGGAAAGATTGGATTTCTTACAAAGTGTGGGTGTCAAAACTGAGGATTTGGTGAAAATCATTCTAAAACAACCTCAAATCTTAGGGTATACAATTGAGAA
TAACATAAAACCACATATTGACTTTTTGAGAGGCTTGGGGGTGCCTGATTCCCGGTTAGGACAAATAATAACAGCAAATCCATCTTTCTTTTCTTATAGCTTGGAGTTGTCTCTGAAGCCAAAGGTAAGATTTTTAACCGAGGAAGTTGGCATTAAAAGAACAGACTTGGGGAAAGTTGTGATTCTAGGCCCTGAGATAC
TGAGACAACCTGCTGAAGCCTTGAAATCTCGGTTAGAATTTCTTTCAAAGGAGCTTGGAGCATCAAAGGGAAATCTAGTGAAAATGGTCACAAAGCATCCACAGCTTCTCCACTACAGCATTACCGATGGTATACAGCCACGAATCAATTTTTTGAGGAGCATTGGCATGAATGAGGCTGACATTGTGAAAGTTTTAACA
AGATTACCCCAGATTTTGTCTCTGTCAGTGGAGAAGAATCTGCGCCCCAAATATTTGTATTTAGTCAAAGAACTCGAAAATGGAGTTGAGTCATTATCAGCACACCCCTTATATTTCAGCATATCGCTTAAACAACGCATTTGGCCTCGTCACAGATTCTTGACTTCCCTGAAAAAGGTTACAAACAGACCTTTCCCTAT
AAAAGCCTTACTTGTTAATGATGACTGTTTCTGTAAGCGGTGGGCTGATACAACTCTTCAAGATTACCAGGCATTTCGACAATTGTTACTGGGTGAGTTGGCAGGGGAGGTTTCACAGAAGCAGGGCGTTGACATGTGATTAAATATGGAGCATACAAAATAGCATTACATTTGCAGGTGCTGACATCAAACTGTGTACT
GATGGTAGTCTACAGAAACCATTGCGAGATGAACCTTCTGAGATAGAAGCGTTGTTGGAAACAGAAAGCCTATTGCATTCTGAATAAGCCTCCCAGAATCTCAAAATTCTAAGTAATGATATTGAATCATAACCATGGTGATACCCTTCTGAAAGTATCCTTACATTCGCGACCGTTTTATCCAAAGTTGGAAGTTGTAA
CATTGATGCTAATTGGCTGTCAGCTAGACTGCAGTGTTTACTGCTTGTTAGTGATTTTTTGCCCTATTATGCTGTTCAGTTTCGAACCAGGACTTCAGATATCTATTTAAAGAAGGAACTTCATGGAGTCATTGCAAAGCAACACAATATGGAATTAGATGTAAACCATACCTCATGGGATAGGTGAAATTGATTATGTA
ATATTGACCCGAAAATGGAAAAGGAAGCACTCAGGATCAATTTTTCAAAGCTGTCTTTTGTCAGCGTTATATTTTCAAATCAGGAAGATAATCCTCAAAACAGTGTATTCTCCGTCCATAACCCCAGTTCGATTTTTTAGTTTGCTGTTAAAATATTGATTTCTCGCAATGTTGAAAAAGTCGGCATCGGCAAAAAGTCG
GCAAGGGTCCCGAATACAACTTCTCGGCAACATCGGCGAAAAAATCGGAAAAAATCGGAAAAAGTCGGCAAACATTAAAAAATACAAAATACATTCATTTTTTTCAGATTTTTAAACATATAACGCAACAATAACATCAGATAAACACCTTGGAACATAAATATGGAGAAAGCGCTGATATATAGATGTAGTGGATGCAA
ATAACTCGGAGCGGTT


>TRINITY_DN44866_c8_g1_i22 from sample A9 / Example unspliced isoform:
GCACAGCTCAGCCGACCAAATATTTCATTCTTCTAACAGTAACACTGGTAAAAATAAATCCAGGTTACGACGAAATGACATCTGGTGTTGGAGTTGCTTGAAGAAAATCTTTAAGCCGAGGTCAATTCCATTGGCATCAGTTAAGAGAGCGGAAAAGTAGCGGAATGAATCTTCTGCTTGAAATTTTTAGCCGGTAAAAC
TTGTTTTTATCTAAATTTTTAGTTTCTGAACGGTGGTGAATCGATTTTCCATTAATTAAAATTCACAGCACTCTGAAAAACTTCTTAAACCCTGACTCTGGTTGCGGGCGGGAAAATCTTTATTCCGCCTTTGAGATTGTTGAAGCTGTAAATTTCTAATTTGCTCGGGGATTTTGTCAAAATAATGCCCGGAATCATCT
GTTTCTAGAGAGAGAGATAAATCTTTATATGGCGACACGTTAAAGACTCAAGAACGGCGACCAAGGAGGTGCCGGCCGAGGAATCGAACACGGGACCCGCTGCTTTAGGTCCTACGTGCTTTAAGAATGGCGAGAAGGAAGATTTCAGAAAGAATAGAACACGGGACACGAATCTTTAGGGCGTATATGCTATTTTGAAG
GTGCCTGTCTTATATTTTTCGAAATGTTACCTGCTACTTGCCTACGTTTGGACTCTTGTGGAAGAAGAGGATTCCAATACCCCGCTCTTTCGTCTTTATACTTGAAAGATTATGTATTGCCTTTGAGAATGAATACATTTTTTCGAAGAAAGCGTTGTTTTGTTCTGTGTATACGCCGTTCAAATCTTGGGGCGTTGAAA
TCCAACCGGTGCCGCTCGGGGAACCGTTATCCACGATGCAATTGCTATCATGACGATGCCGATGACTTTGAGGATGACGAAGACTACGGTACTATTGACAGTGATGTGCTTCTACCTGGGGAACACACTTATGTGGATGCTGATAATGCCAAGTCTGCAGAAACAACCTTTTCTTCCACGTCACTGGGTGCATTCTCAGG
ACAATCCTTCCATGAACAAGAACTGAAGCAAGGAAAAACAAAAGCAAATGTTCTTCAAAAGACTGGAAAGAGGTTGGCTAGGAATGGTACGGTGAGGGTTAATTCATTGGGCCTGCACCCTTCCCCTTTGAGGCTACCTCGAAATGAGTGGGAGAAGAGAGCCTTTGAGATCATACGGCAGCAGAAATTAAGAAATATTG
AACTAGAAAGGAAGCGAAGCGAGCAGAAAATATTGCTTGAATCTCCTAAATCTGAAAACATTGACCAGATTATAGAAAGTTCCCAGAGATTAGGCTCCACGAATGCAAACTTGAATTATGAGGTTACAGCTGGAAACATTGAGGATGTTGAATATCAATTGATGGCAAAGCGATTAGGTTTTGAAGCAAAATGGAAACCC
TTGATTCAGTATTTGAGTAGCCTTGGCTTAAATGAGTGTCACTTTGCCCGAATTTATAATAGGCACAAACCTACCCTAAGAACAAAAGTATCATCAGCCCAGGAAAGATTGGATTTCTTACAAAGTGTGGGTGTCAAAACTGAGGATTTGGTGAAAATCATTCTAAAACAACCTCAAATCTTAGGGTATACAATTGAGAA
TAACATAAAACCACATATTGACTTTTTGAGAGGCTTGGGGGTGCCTGATTCCCGGTTAGGACAAATAATAACAGCAAATCCATCTTTCTTTTCTTATAGCTTGGAGTTGTCTCTGAAGCCAAAGGTAAGATTTTTAACCGAGGAAGTTGGCATTAAAAGAACAGACTTGGGGAAAGTTGTGATTCTAGGCCCTGAGATAC
TGAGACAACCTGCTGAAGCCTTGAAATCTCGGTTAGAATTTCTTTCAAAGGAGCTTGGAGCATCAAAGGGAAATCTAGTGAAAATGGTCACAAAGCATCCACAGCTTCTCCACTACAGCATTACCGATGGTATACAGCCACGAATCAATTTTTTGAGGAGCATTGGCATGAATGAGGCTGACATTGTGAAAGTTTTAACA
AGATTACCCCAGgtgatttttcatttctccagctgatttatttgaggttttcaatgcgtaaggtatacttccatattcctaagcatatatcaattatttcccatattcctaagcatatgaaatgtatgcttttgtttctctgtacaccgaggttgacaatattattcattctaagcagATTTTGTCTCTGTCAGTGGAGA
AGAATCTGCGCCCCAAATATTTGTATTTAGTCAAAGAACTCGAAAATGGAGTTGAGTCATTATCAGCACACCCCTTATATTTCAGCATATCGCTTAAACAACGCATTTGGCCTCGTCACAGATTCTTGACTTCCCTGAAAAAGGTTACAAACAGACCTTTCCCTATAAAAGCCTTACTTGTTAATGATGACTGTTTCTGT
AAGCGGTGGGCTGATACAACTCTTCAAGATTACCAGGCATTTCGACAATTGTTACTGGGTGAGTTGGCAGGGGAGGTTTCACAGAAGCAGGGCGTTGACATGTGATTAAATATGGAGCATACAAAATAGCATTACATTTGCAGGTGCTGACATCAAACTGTGTACTGATGGTAGTCTACAGAAACCATTGCGAGATGAAC
CTTCTGAGATAGAAGCGTTGTTGGAAACAGAAAGCCTATTGCATTCTGAATAAGCCTCCCAGAATCTCAAAATTCTAAGTAATGATATTGAATCATAACCATGGTGATACCCTTCTGAAAGTATCCTTACATTCGCGACCGTTTTATCCAAAGTTGGAAGTTGTAACATTGATGCTAATTGGCTGTCAGCTAGACTGCAG
TGTTTACTGCTTGTTAGTGATTTTTTGCCCTATTATGCTGTTCAGTTTCGAACCAGGACTTCAGATATCTATTTAAAGAAGGAACTTCATGGAGTCATTGCAAAGCAACACAATATGGAATTAGATGTAAACCATACCTCATGGGATAGGTGAAATTGATTATGTAATATTGACCCGAAAATGGAAAAGGAAGCACTCAG
GATCAATTTTTCAAAGCTGTCTTTTGTCAGCGTTATATTTTCAAATCAGGAAGATAATCCTCAAAACAGTGTATTCTCCGTCCATAACCCCAGTTCGATTTTTTAGTTTGCTGTTAAAATATTGATTTCTCGCAATGTTGAAAAAGTCGGCATCGGCAAAAAGTCGGCAAGGGTCCCGAATACAACTTCTCGGCAACATC
GGCGAAAAAATCGGAAAAAATCGGAAAAAGTCGGCAAACATTAAAAAATACAAAATACATTCATTTTTTTCAGATTTTTAAACATATAACGCAACAATAACATCAGATAAACACCTTGGAACATAAATATGGAGAAAGCGCTGATATATAGATGTAGTGGATGCAAATAACTCGGAGCGGTT




Intron 8 GTGATTTTTC ... TCTCTGTCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A136.8424199
A229.5825714
A3202877
A441.18534
A544756
A636854
A730.88472715
A844.1454625
A925.19491518
A1030.56501628



>TRINITY_DN44866_c8_g1_i10 from sample A9 / Example spliced isoform
TACAGCTGGAAACATTGAGGATGTTGAATATCAATTGATGGCAAAGCGATTAGGTTTTGAAGCAAAATGGAAACCCTTGATTCAGTATTTGAGTAGCCTTGGCTTAAATGAGTGTCACTTTGCCCGAATTTATAATAGGCACAAACCTACCCTAAGAACAAAAGTATCATCAGCCCAGGAAAGATTGGATTTCTTACAAA
GTGTGGGTGTCAAAACTGAGGATTTGGTGAAAATCATTCTAAAACAACCTCAAATCTTAGGGTATACAATTGAGAATAACATAAAACCACATATTGACTTTTTGAGAGGCTTGGGGGTGCCTGATTCCCGGTTAGGACAAATAATAACAGCAAATCCATCTTTCTTTTCTTATAGCTTGGAGTTGTCTCTGAAGCCAAAG
GTAAGATTTTTAACCGAGGAAGTTGGCATTAAAAGAACAGACTTGGGGAAAGTTGTGATTCTAGGCCCTGAGATACTGAGACAACCTGCTGAAGCCTTGAAATCTCGGTTAGAATTTCTTTCAAAGGAGCTTGGAGCATCAAAGGGAAATCTAGTGAAAATGGTCACAAAGCATCCACAGCTTCTCCACTACAGCATTAC
CGATGGTATACAGCCACGAATCAATTTTTTGAGGAGCATTGGCATGAATGAGGCTGACATTGTGAAAGTTTTAACAAGATTACCCCAGTGGAGAAGAATCTGCGCCCCAAATATTTGTATTTAGTCAAAGAACTCGAAAATGGAGTTGAGTCATTATCAGCACACCCCTTATATTTCAGCATATCGCTTAAACAACGCAT
TTGGCCTCGTCACAGATTCTTGACTTCCCTGAAAAAGGTTACAAACAGACCTTTCCCTATAAAAGCCTTACTTGTTAATGATGACTGTTTCTGTAAGCGGTGGGCTGATACAACTCTTCAAGATTACCAGGCATTTCGACAATTGTTACTGGGTGAGTTGGCAGGGGAGGTTTCACAGAAGCAGGGCGTTGACATGTGAT
TAAATATGGAGCATACAAAATAGCATTACATTTGCAGGTGCTGACATCAAACTGTGTACTGATGGTAGTCTACAGAAACCATTGCGAGATGAACCTTCTGAGATAGAAGCGTTGTTGGAAACAGAAAGCCTATTGCATTCTGAATAAGCCTCCCAGAATCTCAAAATTCTAAGTAATGATATTGAATCATAACCATGGTG
ATACCCTTCTGAAAGTATCCTTACATTCGCGACCGTTTTATCCAAAGTTGGAAGTTGTAACATTGATGCTAATTGGCTGTCAGCTAGACTGCAGTGTTTACTGCTTGTTAGTGATTTTTTGCCCTATTATGCTGTTCAGTTTCGAACCAGGACTTCAGATATCTATTTAAAGAAGGAACTTCATGGAGTCATTGCAAAGC
AACACAATATGGAATTAGATGTAAACCATACCTCATGGGATAGGTGAAATTGATTATGTAATATTGACCCGAAAATGGAAAAGGAAGCACTCAGGATCAATTTTTCAAAGCTGTCTTTTGTCAGCGTTATATTTTCAAATCAGGAAGATAATCCTCAAAACAGTGTATTCTCCGTCCATAACCCCAGTTCGATTTTTTAG
TTTGCTGTTAAAATATTGATTTCTCGCAATGTTGAAAAAGTCGGCATCGGCAAAAAGTCGGCAAGGGTCCCGAATACAACTTCTCGGCAACATCGGCGAAAAAATCGGAAAAAATCGGAAAAAGTCGGCAAACATTAAAAAATACAAAATACATTCATTTTTTTCAGATTTTTAAACATATAACGCAACAATAACATCAG
ATAAACACCTTGGAACATAAATATGGAGAAAGCGCTGATATATAGATGTAGTGGATGCAAATAACTCGGAGCGGTT


>TRINITY_DN44866_c8_g1_i22 from sample A9 / Example unspliced isoform:
GCACAGCTCAGCCGACCAAATATTTCATTCTTCTAACAGTAACACTGGTAAAAATAAATCCAGGTTACGACGAAATGACATCTGGTGTTGGAGTTGCTTGAAGAAAATCTTTAAGCCGAGGTCAATTCCATTGGCATCAGTTAAGAGAGCGGAAAAGTAGCGGAATGAATCTTCTGCTTGAAATTTTTAGCCGGTAAAAC
TTGTTTTTATCTAAATTTTTAGTTTCTGAACGGTGGTGAATCGATTTTCCATTAATTAAAATTCACAGCACTCTGAAAAACTTCTTAAACCCTGACTCTGGTTGCGGGCGGGAAAATCTTTATTCCGCCTTTGAGATTGTTGAAGCTGTAAATTTCTAATTTGCTCGGGGATTTTGTCAAAATAATGCCCGGAATCATCT
GTTTCTAGAGAGAGAGATAAATCTTTATATGGCGACACGTTAAAGACTCAAGAACGGCGACCAAGGAGGTGCCGGCCGAGGAATCGAACACGGGACCCGCTGCTTTAGGTCCTACGTGCTTTAAGAATGGCGAGAAGGAAGATTTCAGAAAGAATAGAACACGGGACACGAATCTTTAGGGCGTATATGCTATTTTGAAG
GTGCCTGTCTTATATTTTTCGAAATGTTACCTGCTACTTGCCTACGTTTGGACTCTTGTGGAAGAAGAGGATTCCAATACCCCGCTCTTTCGTCTTTATACTTGAAAGATTATGTATTGCCTTTGAGAATGAATACATTTTTTCGAAGAAAGCGTTGTTTTGTTCTGTGTATACGCCGTTCAAATCTTGGGGCGTTGAAA
TCCAACCGGTGCCGCTCGGGGAACCGTTATCCACGATGCAATTGCTATCATGACGATGCCGATGACTTTGAGGATGACGAAGACTACGGTACTATTGACAGTGATGTGCTTCTACCTGGGGAACACACTTATGTGGATGCTGATAATGCCAAGTCTGCAGAAACAACCTTTTCTTCCACGTCACTGGGTGCATTCTCAGG
ACAATCCTTCCATGAACAAGAACTGAAGCAAGGAAAAACAAAAGCAAATGTTCTTCAAAAGACTGGAAAGAGGTTGGCTAGGAATGGTACGGTGAGGGTTAATTCATTGGGCCTGCACCCTTCCCCTTTGAGGCTACCTCGAAATGAGTGGGAGAAGAGAGCCTTTGAGATCATACGGCAGCAGAAATTAAGAAATATTG
AACTAGAAAGGAAGCGAAGCGAGCAGAAAATATTGCTTGAATCTCCTAAATCTGAAAACATTGACCAGATTATAGAAAGTTCCCAGAGATTAGGCTCCACGAATGCAAACTTGAATTATGAGGTTACAGCTGGAAACATTGAGGATGTTGAATATCAATTGATGGCAAAGCGATTAGGTTTTGAAGCAAAATGGAAACCC
TTGATTCAGTATTTGAGTAGCCTTGGCTTAAATGAGTGTCACTTTGCCCGAATTTATAATAGGCACAAACCTACCCTAAGAACAAAAGTATCATCAGCCCAGGAAAGATTGGATTTCTTACAAAGTGTGGGTGTCAAAACTGAGGATTTGGTGAAAATCATTCTAAAACAACCTCAAATCTTAGGGTATACAATTGAGAA
TAACATAAAACCACATATTGACTTTTTGAGAGGCTTGGGGGTGCCTGATTCCCGGTTAGGACAAATAATAACAGCAAATCCATCTTTCTTTTCTTATAGCTTGGAGTTGTCTCTGAAGCCAAAGGTAAGATTTTTAACCGAGGAAGTTGGCATTAAAAGAACAGACTTGGGGAAAGTTGTGATTCTAGGCCCTGAGATAC
TGAGACAACCTGCTGAAGCCTTGAAATCTCGGTTAGAATTTCTTTCAAAGGAGCTTGGAGCATCAAAGGGAAATCTAGTGAAAATGGTCACAAAGCATCCACAGCTTCTCCACTACAGCATTACCGATGGTATACAGCCACGAATCAATTTTTTGAGGAGCATTGGCATGAATGAGGCTGACATTGTGAAAGTTTTAACA
AGATTACCCCAGgtgatttttcatttctccagctgatttatttgaggttttcaatgcgtaaggtatacttccatattcctaagcatatatcaattatttcccatattcctaagcatatgaaatgtatgcttttgtttctctgtacaccgaggttgacaatattattcattctaagcagattttgtctctgtcagTGGAGA

AGAATCTGCGCCCCAAATATTTGTATTTAGTCAAAGAACTCGAAAATGGAGTTGAGTCATTATCAGCACACCCCTTATATTTCAGCATATCGCTTAAACAACGCATTTGGCCTCGTCACAGATTCTTGACTTCCCTGAAAAAGGTTACAAACAGACCTTTCCCTATAAAAGCCTTACTTGTTAATGATGACTGTTTCTGT
AAGCGGTGGGCTGATACAACTCTTCAAGATTACCAGGCATTTCGACAATTGTTACTGGGTGAGTTGGCAGGGGAGGTTTCACAGAAGCAGGGCGTTGACATGTGATTAAATATGGAGCATACAAAATAGCATTACATTTGCAGGTGCTGACATCAAACTGTGTACTGATGGTAGTCTACAGAAACCATTGCGAGATGAAC
CTTCTGAGATAGAAGCGTTGTTGGAAACAGAAAGCCTATTGCATTCTGAATAAGCCTCCCAGAATCTCAAAATTCTAAGTAATGATATTGAATCATAACCATGGTGATACCCTTCTGAAAGTATCCTTACATTCGCGACCGTTTTATCCAAAGTTGGAAGTTGTAACATTGATGCTAATTGGCTGTCAGCTAGACTGCAG
TGTTTACTGCTTGTTAGTGATTTTTTGCCCTATTATGCTGTTCAGTTTCGAACCAGGACTTCAGATATCTATTTAAAGAAGGAACTTCATGGAGTCATTGCAAAGCAACACAATATGGAATTAGATGTAAACCATACCTCATGGGATAGGTGAAATTGATTATGTAATATTGACCCGAAAATGGAAAAGGAAGCACTCAG
GATCAATTTTTCAAAGCTGTCTTTTGTCAGCGTTATATTTTCAAATCAGGAAGATAATCCTCAAAACAGTGTATTCTCCGTCCATAACCCCAGTTCGATTTTTTAGTTTGCTGTTAAAATATTGATTTCTCGCAATGTTGAAAAAGTCGGCATCGGCAAAAAGTCGGCAAGGGTCCCGAATACAACTTCTCGGCAACATC
GGCGAAAAAATCGGAAAAAATCGGAAAAAGTCGGCAAACATTAAAAAATACAAAATACATTCATTTTTTTCAGATTTTTAAACATATAACGCAACAATAACATCAGATAAACACCTTGGAACATAAATATGGAGAAAGCGCTGATATATAGATGTAGTGGATGCAAATAACTCGGAGCGGTT