sp|Q8VZ20|ASR3_ARATH ----> Trihelix transcription factor ASR3

Intron 1 GTAATTTTCT ... AAGGATACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	37.75	7	5	3.5
A2	53.19	11	17	8
A3	48.57	9	13	4
A4	52.73	13	20	9
A5	39.94	9	7	5
A6	46.53	65.5	70	44
A7	40.8	59.5	52	30
A8	47.84	57.5	75.5	30
A9	40.4	45	42	19
A10	48.03	33	40.5	20.5

>TRINITY_DN39452_c0_g1_i3 from sample A6 / Example spliced isoform

AAAAAATAAAATAAAAGATTAGTTAGCAAAACAACCTAACCTTCTTTTTTATCACCAATTTCTCTCTGAAACATTCTCTGAGCCTGCTTGCATTGTAAAGAGTGTCAAAGGGACAGAGCCCTCCCAATCGAAGGACAGGGCCTTGCTTTGGGACGCCCGTCGCGCCGTCCGGCCGTCCCCTCGCGAATCCTCCTGCAAAT
TTTCCTGTCACGATGCCCTGCCCTGTCTGAGTCTGGGAGCTTCGATTCTCCCAGGAATTCTCCGTTCTTATGACAGAATTCCTTCCCCGTCACAATTACGCCGCGATGGCCGTGGAATCAAACGGCTTCGCATTCAAGAGCCCGTCCGACCTGTTACTCTCCTCTCCTCGTAACCCCACCGGTAAGGCCGGCGCCACTGA
AGGAAAAATTCCGACCGGAATCCCCAAACCCCACTCAATCGGCAAGGAGGAGGCCACCGGCAATGGTAGTAACAATCCGTCGAGTGCCGATCACGCCGGCGGCGACGGCAGCGACGGCCAGGACAAGACGCCCCGCCTCCCTCGCTGGACGAGGCAGGAAATTCTGGTCTTGATCGAAGGCAAAAGAGTAGTCGAGAGCC
GCGGCAAAAAATCCAGGGTAACCGTTGATGGGCAGAACGGCCAGGTAAATACCGAATCCAAATGGTCTTCAATTTCATCTTATTGCAAGCGGCACGGGGTAAGTAGGGAGCCCGTCCAGTGTAGAAAACGGTGGAGTAATTTATCTGGGGATTATAAGAAGATCAGGGATTGGGAAAACAGTCATGTTGAACAGCAGTCC
TTCTGGGCCATGAGGAACGACATCAGACGGGAAAATAAGCTCCCGGGGTTTTTTGACAGAGAAGTCTACAGCATATTAGATAGGTTCATTGGGAAACAGGATGGGGGTAAAGAGACGATCAGGGTGATGCAAGAACCCATCTTCGACAGCGGGCGGCCTTGTGGTGGTGGCGAAGATAATCTGTTTTCTGATTTTGAGCA
TTCTGCCGAGGAGGAAGTTGCAGGCAGCCCCGACAAGGATGCAGCGGCGATGCTCGACAGCCCCACTACCACGGCTGCGACGCCACCCCAGCTCTATCGGCACGGTGCTAGGACTGAAAAGGTGCCAACTCCAGTTGCTGAGAAAGGAACGGCCTCTTTTGCCTCTGGGCAAAAGAGGAAGCGAACTTCTTCTGAAGGAG
AAAGTGACGGTGACCTGAAAGATCAGTTGATTGCTGTTTTGGAAAGAAACAGCCGGGTGTTGAGTGCACATGTGGATGCACATAATCTGAATTGCCAATTGGACAGAAATCAGAGAAGGGACCATGCAGATAGTTTGGTAGGAGTTTTGGGAAAGCTTGCAGATGCTTTGGGACGAATAGCTGACAAGTTGTAGATGCGA
ATGCAGACTAGTTACGTATACTCCACCATTAAGTTTTTGGAGGCTGCTTTTGGCAGTTTTATTGGCATGATCATTTTTCCAAATGCTTTTAGATGTTTTTTTATATCCCCATTGAAATTTGAAGCAAAGACCTTTTCAAGCAGTTTTCATTACTACTCTCTGTTCACTGCCATTTTTTCTTTCTACTTGTTATCATTCTT
CTCATGACCAGTCTTTAACCTAGGTGGAACCTCACCTGAAAACTTTTATCTTAAATGGAATGAAGATAACATTGTTGCCAAATAATTGCATGAAGTCATACAAGTAGGAAAGCCTTAGAATGTGCGTTTCTCAATATTTGATGCGGAGGAGAAGCTCTGACAAGAATTAGCCAGGCTAGGAGTTCCGAGGAAAAGTATCT
ACAGAACTTATTGGAAGACAATACTGGGGTGCCTAGCAAAACTATTTCCAAGTATATCAAAATGGTAGCCTAAAGCCGTGAGAATATGCATTGAAGAAAGTGTTCGTAGTGGGTCTGGAATATATAAGCAAAGAATGATAATAATGCCGGACTCGTCTTGCTACTGACAAAATTCTTTTGATTTCTTTTTCCATGCTATT
AACTCATTTTCAGAATTTTTGGTTGTTATTGCCCCAATCATAATATACTTTTTACCACGAACTTCACAGCAGTGGCATCAAGCTTGCAACTCTTTTTGCTGGAACATTTTTCTTGGATGGCCTGTGTTTTGCTGCTTTGCATGTGAACCTCACACACGGATTTTGGAAAAAATAGCATATTCTTGCGAGCAAACTGCAGA
AGAAAACCATGGTTGGAACATTGCTTCGTGCTTTCTTTAAATTTCCAATTGTTCAAATTGAATATACTTCTGGATGGGAAATTTTCATTGAGGTGCAGATTATGTTTTCCTTGAAATAATCGCCATATATTTTTACACACACATATATATATCACAAAA

>TRINITY_DN39452_c0_g1_i1 from sample A6 / Example unspliced isoform:

AAAAAATAAAATAAAAGATTAGTTAGCAAAACAACCTAACCTTCTTTTTTATCACCAATTTCTCTCTGAAACATTCTCTGAGCCTGCTTGCATTGTAAAGAGTGTCAAAGGGACAGAGCCCTCCCAATCGAAGGACAGGGCCTTGCTTTGGGACGCCCGTCGCGCCGTCCGGCCGTCCCCTCGCGAATCCTCCTGCAAAT
TTTCCTGTCACGATGCCCTGCCCTGTCTGAGTCTGGGAGCTTCGATTCTCCCAGGAATTCTCCGTTCTTATGACAGAATTCCTTCCCCGTCACAATTACGCCGCGATGGCCGTGGAATCAAACGGCTTCGCATTCAAGAGCCCGTCCGACCTGTTACTCTCCTCTCCTCGTAACCCCACCGGTAAGGCCGGCGCCACTGA
AGGAAAAATTCCGACCGGAATCCCCAAACCCCACTCAATCGGCAAGGAGGAGGCCACCGGCAATGGTAGTAACAATCCGTCGAGTGCCGATCACGCCGGCGGCGACGGCAGCGACGGCCAGGACAAGACGCCCCGCCTCCCTCGCTGGACGAGGCAGGAAATTCTGGTCTTGATCGAAGGCAAAAGAGTAGTCGAGAGCC
GCGGCAAAAAATCCAGGGTAACCGTTGATGGGCAGAACGGCCAGGTAAATACCGAATCCAAATGGTCTTCAATTTCATCTTATTGCAAGCGGCACGGGGTAAGTAGGGAGCCCGTCCAGTGTAGAAAACGGTGGAGTAATTTATCTGGGGATTATAAGAAGATCAGGGATTGGGAAAACAGTCATGTTGAACAGCAGTCC
TTCTGGGCCATGAGGAACGACATCAGACGGGAAAATAAGCTCCCGGGGTTTTTTGACAGAGAAGTCTACAGCATATTAGATAGGTTCATTGGGAAACAGGATGGGGGTAAAGAGACGATCAGGGTGATGCAAGAACCCATCTTCGACAGCGGGCGGCCTTGTGGTGGTGGCGAAGATAATCTGTTTTCTGATTTTGAGCA
TTCTGCCGAGGAGGAAGTTGCAGGCAGCCCCGACAAGGATGCAGCGGCGATGCTCGACAGCCCCACTACCACGGCTGCGACGCCACCCCAGCTCTATCGGCACGGTGCTAGGACTGAAAAGGTGCCAACTCCAGTTGCTGAGAAAGGAACGGCCTCTTTTGCCTCTGGGCAAAAGAGGAAGCGAACTTCTTCTGAAGGAG
AAAGTGACGGTGACCTGAAAGATCAGTTGATTGCTGTTTTGGAAAGAAACAGCCGGGTGTTGAGTGCACATGTGGATGCACATAATCTGAATTGCCAATTGGACAGAAATCAGAGAAGGGACCATGCAGATAGTTTGGTAGGAGTTTTGGGAAAGCTTGCAGATGCTTTGGGACGAATAGCTGACAAGTTGTAgtaattt
tctcaatcccttcaaaggatacagGATGCGAATGCAGACTAGTTACGTATACTCCACCATTAAGTTTTTGGAGGCTGCTTTTGGCAGTTTTATTGGCATGATCATTTTTCCAAATGCTTTTAGATGTTTTTTTATATCCCCATTGAAATTTGAAGCAAAGACCTTTTCAAGCAGTTTTCATTACTACTCTCTGTTCACTG
CCATTTTTTCTTTCTACTTGTTATCATTCTTCTCATGACCAGTCTTTAACCTAGGTGGAACCTCACCTGAAAACTTTTATCTTAAATGGAATGAAGATAACATTGTTGCCAAATAATTGCATGAAGTCATACAAGTAGGAAAGCCTTAGAATGTGCGTTTCTCAATATTTGATGCGGAGGAGAAGCTCTGACAAGAATTA
GCCAGGCTAGGAGTTCCGAGGAAAAGTATCTACAGAACTTATTGGAAGACAATACTGGGGTGCCTAGCAAAACTATTTCCAAGTATATCAAAATGGTAGCCTAAAGCCGTGAGAATATGCATTGAAGAAAGTGTTCGTAGTGGGTCTGGAATATATAAGCAAAGAATGATAATAATGCCGGACTCGTCTTGCTACTGACA
AAATTCTTTTGATTTCTTTTTCCATGCTATTAACTCATTTTCAGAATTTTTGGTTGTTATTGCCCCAATCATAATATACTTTTTACCACGAACTTCACAGCAGTGGCATCAAGCTTGCAACTCTTTTTGCTGGAACATTTTTCTTGGATGGCCTGTGTTTTGCTGCTTTGCATGTGAACCTCACACACGGATTTTGGAAA
AAATAGCATATTCTTGCGAGCAAACTGCAGAAGAAAACCATGGTTGGAACATTGCTTCGTGCTTTCTTTAAATTTCCAATTGTTCAAATTGAATATACTTCTGGATGGGAAATTTTCATTGAGGTGCAGATTATGTTTTCCTTGAAATAATCGCCATATATTTTTACACACACATATATATATCACAAAA

Intron 2 GTGCTAGGAC ... AATGATACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	55.56	33.6	42	3.4
A2	59.94	27.4	41	8
A3	64.25	25.6	46	4
A4	55.56	20	25	9
A5	63.73	18.8	33	5
A6	61.54	131.2	210	44.6
A7	58.48	120	169	29.6
A8	62.94	117.8	200	29.8
A9	63.66	118.2	207	18.8
A10	60.48	122.2	187	20.4

>TRINITY_DN39452_c0_g1_i2 from sample A6 / Example spliced isoform

AAAAAATAAAATAAAAGATTAGTTAGCAAAACAACCTAACCTTCTTTTTTATCACCAATTTCTCTCTGAAACATTCTCTGAGCCTGCTTGCATTGTAAAGAGTGTCAAAGGGACAGAGCCCTCCCAATCGAAGGACAGGGCCTTGCTTTGGGACGCCCGTCGCGCCGTCCGGCCGTCCCCTCGCGAATCCTCCTGCAAAT
TTTCCTGTCACGATGCCCTGCCCTGTCTGAGTCTGGGAGCTTCGATTCTCCCAGGAATTCTCCGTTCTTATGACAGAATTCCTTCCCCGTCACAATTACGCCGCGATGGCCGTGGAATCAAACGGCTTCGCATTCAAGAGCCCGTCCGACCTGTTACTCTCCTCTCCTCGTAACCCCACCGGTAAGGCCGGCGCCACTGA
AGGAAAAATTCCGACCGGAATCCCCAAACCCCACTCAATCGGCAAGGAGGAGGCCACCGGCAATGGTAGTAACAATCCGTCGAGTGCCGATCACGCCGGCGGCGACGGCAGCGACGGCCAGGACAAGACGCCCCGCCTCCCTCGCTGGACGAGGCAGGAAATTCTGGTCTTGATCGAAGGCAAAAGAGTAGTCGAGAGCC
GCGGCAAAAAATCCAGGGTAACCGTTGATGGGCAGAACGGCCAGGTAAATACCGAATCCAAATGGTCTTCAATTTCATCTTATTGCAAGCGGCACGGGGTAAGTAGGGAGCCCGTCCAGTGTAGAAAACGGTGGAGTAATTTATCTGGGGATTATAAGAAGATCAGGGATTGGGAAAACAGTCATGTTGAACAGCAGTCC
TTCTGGGCCATGAGGAACGACATCAGACGGGAAAATAAGCTCCCGGGGTTTTTTGACAGAGAAGTCTACAGCATATTAGATAGGTTCATTGGGAAACAGGATGGGGGTAAAGAGACGATCAGGGTGATGCAAGAACCCATCTTCGACAGCGGGCGGCCTTGTGGTGGTGGCGAAGATAATCTGTTTTCTGATTTTGAGCA
TTCTGCCGAGGAGGAAGTTGCAGGCAGCCCCGACAAGGATGCAGCGGCGATGCTCGACAGCCCCACTACCACGGCTGCGACGCCACCCCAGCTCTATCGGCACGGATGCGAATGCAGACTAGTTACGTATACTCCACCATTAAGTTTTTGGAGGCTGCTTTTGGCAGTTTTATTGGCATGATCATTTTTCCAAATGCTTT
TAGATGTTTTTTTATATCCCCATTGAAATTTGAAGCAAAGACCTTTTCAAGCAGTTTTCATTACTACTCTCTGTTCACTGCCATTTTTTCTTTCTACTTGTTATCATTCTTCTCATGACCAGTCTTTAACCTAGGTGGAACCTCACCTGAAAACTTTTATCTTAAATGGAATGAAGATAACATTGTTGCCAAATAATTGC
ATGAAGTCATACAAGTAGGAAAGCCTTAGAATGTGCGTTTCTCAATATTTGATGCGGAGGAGAAGCTCTGACAAGAATTAGCCAGGCTAGGAGTTCCGAGGAAAAGTATCTACAGAACTTATTGGAAGACAATACTGGGGTGCCTAGCAAAACTATTTCCAAGTATATCAAAATGGTAGCCTAAAGCCGTGAGAATATGC
ATTGAAGAAAGTGTTCGTAGTGGGTCTGGAATATATAAGCAAAGAATGATAATAATGCCGGACTCGTCTTGCTACTGACAAAATTCTTTTGATTTCTTTTTCCATGCTATTAACTCATTTTCAGAATTTTTGGTTGTTATTGCCCCAATCATAATATACTTTTTACCACGAACTTCACAGCAGTGGCATCAAGCTTGCAA
CTCTTTTTGCTGGAACATTTTTCTTGGATGGCCTGTGTTTTGCTGCTTTGCATGTGAACCTCACACACGGATTTTGGAAAAAATAGCATATTCTTGCGAGCAAACTGCAGAAGAAAACCATGGTTGGAACATTGCTTCGTGCTTTCTTTAAATTTCCAATTGTTCAAATTGAATATACTTCTGGATGGGAAATTTTCATT
GAGGTGCAGATTATGTTTTCCTTGAAATAATCGCCATATATTTTTACACACACATATATATATCACAAAA

>TRINITY_DN39452_c0_g1_i1 from sample A6 / Example unspliced isoform:

AAAAAATAAAATAAAAGATTAGTTAGCAAAACAACCTAACCTTCTTTTTTATCACCAATTTCTCTCTGAAACATTCTCTGAGCCTGCTTGCATTGTAAAGAGTGTCAAAGGGACAGAGCCCTCCCAATCGAAGGACAGGGCCTTGCTTTGGGACGCCCGTCGCGCCGTCCGGCCGTCCCCTCGCGAATCCTCCTGCAAAT
TTTCCTGTCACGATGCCCTGCCCTGTCTGAGTCTGGGAGCTTCGATTCTCCCAGGAATTCTCCGTTCTTATGACAGAATTCCTTCCCCGTCACAATTACGCCGCGATGGCCGTGGAATCAAACGGCTTCGCATTCAAGAGCCCGTCCGACCTGTTACTCTCCTCTCCTCGTAACCCCACCGGTAAGGCCGGCGCCACTGA
AGGAAAAATTCCGACCGGAATCCCCAAACCCCACTCAATCGGCAAGGAGGAGGCCACCGGCAATGGTAGTAACAATCCGTCGAGTGCCGATCACGCCGGCGGCGACGGCAGCGACGGCCAGGACAAGACGCCCCGCCTCCCTCGCTGGACGAGGCAGGAAATTCTGGTCTTGATCGAAGGCAAAAGAGTAGTCGAGAGCC
GCGGCAAAAAATCCAGGGTAACCGTTGATGGGCAGAACGGCCAGGTAAATACCGAATCCAAATGGTCTTCAATTTCATCTTATTGCAAGCGGCACGGGGTAAGTAGGGAGCCCGTCCAGTGTAGAAAACGGTGGAGTAATTTATCTGGGGATTATAAGAAGATCAGGGATTGGGAAAACAGTCATGTTGAACAGCAGTCC
TTCTGGGCCATGAGGAACGACATCAGACGGGAAAATAAGCTCCCGGGGTTTTTTGACAGAGAAGTCTACAGCATATTAGATAGGTTCATTGGGAAACAGGATGGGGGTAAAGAGACGATCAGGGTGATGCAAGAACCCATCTTCGACAGCGGGCGGCCTTGTGGTGGTGGCGAAGATAATCTGTTTTCTGATTTTGAGCA
TTCTGCCGAGGAGGAAGTTGCAGGCAGCCCCGACAAGGATGCAGCGGCGATGCTCGACAGCCCCACTACCACGGCTGCGACGCCACCCCAGCTCTATCGGCACGgtgctaggactgaaaaggtgccaactccagttgctgagaaaggaacggcctcttttgcctctgggcaaaagaggaagcgaacttcttctgaaggag
aaagtgacggtgacctgaaagatcagttgattgctgttttggaaagaaacagccgggtgttgagtgcacatgtggatgcacataatctgaattgccaattggacagaaatcagagaagggaccatgcagatagtttggtaggagttttgggaaagcttgcagatgctttgggacgaatagctgacaagttgtagtaattt
tctcaatcccttcaaaggatacagGATGCGAATGCAGACTAGTTACGTATACTCCACCATTAAGTTTTTGGAGGCTGCTTTTGGCAGTTTTATTGGCATGATCATTTTTCCAAATGCTTTTAGATGTTTTTTTATATCCCCATTGAAATTTGAAGCAAAGACCTTTTCAAGCAGTTTTCATTACTACTCTCTGTTCACTG
CCATTTTTTCTTTCTACTTGTTATCATTCTTCTCATGACCAGTCTTTAACCTAGGTGGAACCTCACCTGAAAACTTTTATCTTAAATGGAATGAAGATAACATTGTTGCCAAATAATTGCATGAAGTCATACAAGTAGGAAAGCCTTAGAATGTGCGTTTCTCAATATTTGATGCGGAGGAGAAGCTCTGACAAGAATTA
GCCAGGCTAGGAGTTCCGAGGAAAAGTATCTACAGAACTTATTGGAAGACAATACTGGGGTGCCTAGCAAAACTATTTCCAAGTATATCAAAATGGTAGCCTAAAGCCGTGAGAATATGCATTGAAGAAAGTGTTCGTAGTGGGTCTGGAATATATAAGCAAAGAATGATAATAATGCCGGACTCGTCTTGCTACTGACA
AAATTCTTTTGATTTCTTTTTCCATGCTATTAACTCATTTTCAGAATTTTTGGTTGTTATTGCCCCAATCATAATATACTTTTTACCACGAACTTCACAGCAGTGGCATCAAGCTTGCAACTCTTTTTGCTGGAACATTTTTCTTGGATGGCCTGTGTTTTGCTGCTTTGCATGTGAACCTCACACACGGATTTTGGAAA
AAATAGCATATTCTTGCGAGCAAACTGCAGAAGAAAACCATGGTTGGAACATTGCTTCGTGCTTTCTTTAAATTTCCAATTGTTCAAATTGAATATACTTCTGGATGGGAAATTTTCATTGAGGTGCAGATTATGTTTTCCTTGAAATAATCGCCATATATTTTTACACACACATATATATATCACAAAA