sp|P35131|UBC8_ARATH ----> Ubiquitin-conjugating enzyme E2 8
Intron 1 GTAAGGCGCT ... GATTCCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.06 | 742.1 | 62.3 | 561.3 |
| A2 | 42.97 | 917.1 | 81.3 | 727.6 |
| A3 | 41.58 | 1051.2 | 74.3 | 790.9 |
| A4 | 43.2 | 681.6 | 54.6 | 545.4 |
| A5 | 43.06 | 570.6 | 46.3 | 454.4 |
| A6 | 40.55 | 8406.3 | 566.9 | 6111.2 |
| A7 | 40.66 | 6951.4 | 370.6 | 5099.5 |
| A8 | 40.01 | 5030.5 | 235 | 3614.6 |
| A9 | 39.37 | 7300.1 | 400.9 | 5059.4 |
| A10 | 41.13 | 6122.5 | 262.4 | 4600.9 |
>TRINITY_DN124966_c4_g2_i6 from sample A1 / Example spliced isoformCCTATCTTTGCTATGTTGAGGACGGCAGAATAATCTTTTGTGTTGGGGTTTTGCTTTCCTTAAGAACCGAGTCGGGGACTTCTTGATATTCAAGGCGCGCCTGACCTGTAGAGATCCGCGATTGCTCGAATGGCTTCTAAGCGCATACTGAAGGAATTGAAGGACCTGCAGAGAGACCCGCCTACGTCGTGCAGCGCAGG
TCCTGTGGCTGACGATATGTTTCATTGGCAAGCGACAATTATGGGTCCTGGTGATAGTCCGTACGCAGGAGGTGTGTTTTTAGTTACCATTCATTTTCCACCTGACTACCCATTCAAGCCTCCAAAGGTTGCCTTCAGGACAAAAGTATTTCATCCAAATATCAATAGCAATGGGAATATTTGTCTGGACATTCTCAAAG
AGCAGTGGAGTCCTGCATTAACTATTTCAAAGGTATTGCTGTCAATATGCTCATTGCTCACTGACCCGAATCCGGATGATCCTTTGGTTCCTGAAATTGCACATATGTACAAGAATGACAAGGGGAAGTATGAGGCTACTGCACGCAATTGGACCCAAAAGTATGCAATGGCCTAATTTAATATCAATGTAATCCAGTTA
TCTCCATCATATTTGAATATATGGTTTTTATTTGTGGAGACTCTTCTGACTTTAAATAAAACATTATATTTTTTTCCTTTTAACGTTAGTTTATCATATCACACAAAAATGTAGCATGGTTGCAGTGGCTATCTTATATCGGATAAAATGTAGGATGGTTGCAGTGAATATTTACCAGTGGATAAAAATGTATGGTTGTA
GTAAATATCTTCAAAAAATAGTGTAGCATTACTTCCGACATATTTATGTTGTTGAAAGTCTGCTGTTGAAAACTTACAATTTTTTTGAATTTATAGATAGGATTGTTCTTTGGAAACTTTACTGAATTTTTTGAAAGGTGAAAAAGACACTTATACTTGCAGAAATGAGACAGCCTCGAG
>TRINITY_DN124966_c4_g2_i1 from sample A1 / Example unspliced isoform:CCTATCTTTGCTATGTTGAGGACGGCAGAATAATCTTTTGTGTTGGGGTTTTGCTTTCCTTAAGAACCGAGTCGGGGACTTCTTGATATTCAAGGCGCGCCTGACCTGTgtaaggcgcttgtgtattggttctctcttcaaattcttaggagttttttgttctgaatattgtatccgatcaggtctgttttgggggttga
ttccgcagAGAGATCCGCGATTGCTCGAATGGCTTCTAAGCGCATACTGAAGGAATTGAAGGACCTGCAGAGAGACCCGCCTACGTCGTGCAGCGCAGGTCCTGTGGCTGACGATATGTTTCATTGGCAAGCGACAATTATGGGTCCTGGTGATAGTCCGTACGCAGGAGGTGTGTTTTTAGTTACCATTCATTTTCCAC
CTGACTACCCATTCAAGCCTCCAAAGGTTGCCTTCAGGACAAAAGTATTTCATCCAAATATCAATAGCAATGGGAATATTTGTCTGGACATTCTCAAAGAGCAGTGGAGTCCTGCATTAACTATTTCAAAGGTATTGCTGTCAATATGCTCATTGCTCACTGACCCGAATCCGGATGATCCTTTGGTTCCTGAAATTGCA
CATATGTACAAGAATGACAAGGGGAAGTATGAGGCTACTGCACGCAATTGGACCCAAAAGTATGCAATGGCCTAATTTAATATCAATGTAATCCAGTTATCTCCATCATATTTGAATATATGGTTTTTATTTGTGGAGACTCTTCTGACTTTAAATAAAACATTATATTTTTTTCCTTTTAACGTTAGTTTATCATATCA
CACAAAAATGTAGCATGGTTGCAGTGGCTATCTTATATCGGATAAAATGTAGGATGGTTGCAGTGAATATTTACCAGTGGATAAAAATGTATGGTTGTAGTAAATATCTTCAAAAAATAGTGTAGCATTACTTCCGACATATTTATGTTGTTGAAAGTCTGCTGTTGAAAACTTACAATTTTTTTGAATTTATAGATAGG
ATTGTTCTTTGGAAACTTTACTGAATTTTTTGAAAGGTGAAAAAGACACTTATACTTGCAGAAATGAGACAGCCTCGAG
Intron 2 GTGGGCATTT ... ATCCGATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 64.39 | 151 | 2 | 273 |
| A2 | 69.26 | 142 | 9 | 320 |
| A3 | 67.35 | 144 | 1 | 297 |
| A4 | 66.13 | 126 | 6 | 246 |
| A5 | 66.78 | 98 | 5 | 197 |
| A6 | 65.06 | 1196 | 35 | 2227 |
| A7 | 62.8 | 1020 | 27 | 1722 |
| A8 | 63.26 | 650 | 15 | 1119 |
| A9 | 63.84 | 995 | 26 | 1757 |
| A10 | 61.1 | 941 | 33 | 1478 |
>TRINITY_DN38559_c0_g1_i3 from sample A7 / Example spliced isoformCACGAATCTACCTTTTAACAGCATCGGAACCAACCTCACTCCATCCTTTCGAATCTTGATTACCCCTCCATCCCTGGAATATTGACCAAATCAGAATCCCACAGCCCTTAATTTTGTCCCATCAACGTACAACCGACGAATGAACGTTTATGGATTGGATAGAAATCCGAATTCAACGGCATCTGGGCACCGTGGATTTC
AATTTTCTGCCACCGCTGAGGGATAGAATTCCGATAAATTCCCATATCAGACATAAGGAATCGGAATAGGATAAGATTCACAAGCTTTAACTTTTGTTTCCTTGCAGGAATATTATAAAAAAGGAAAGAAGGGGGATATTGCTTTGCAGCCGCAGGTCGAGGCCCGAGGGGTCGAATCTGTTATTGGAGTCCAACCCGAC
TACGACGACGTCAGATTCTATCGTTATCCGATACGATACGCTTGTAGTATTGCCGCGTGATAAAGCGACAGGTCTGTTTTGGGGGTTGATTCCGCAGAGAGATCCGCGATTGCTCGAATGGCTTCTAAGCGCATACTGAAGGAATTGAAGGACCTGCAGAGAGACCCGCCTACGTCGTGCAGCGCAGGTCCTGTGGCTGA
CGATATGTTTCATTGGCAAGCGACAATTATGGGTCCTGGTGATAGTCCGTACGCAGGAGGTGTGTTTTTAGTTACCATTCATTTTCCACCTGACTACCCATTCAAGCCTCCAAAGGTTGCCTTCAGGACAAAAGTATTTCATCCAAATATCAATAGCAATGGGAATATTTGTCTGGACATTCTCAAAGAGCAGTGGAGTC
CTGCATTAACTATTTCAAAGGTATTGCTGTCAATATGCTCATTGCTCACTGACCCGAATCCGGATGATCCTTTGGTTCCTGAAATTGCACATATGTACAAGAATGACAAGGGGAAGTATGAGGCTACTGCACGCAATTGGACCCAAAAGTATGCAATGGCCTAATTTAATATCAAT
>TRINITY_DN38559_c0_g1_i1 from sample A7 / Example unspliced isoform:CACGAATCTACCTTTTAACAGCATCGGAACCAACCTCACTCCATCCTTTCGAATCTTGATTACCCCTCCATCCCTGGAATATTGACCAAATCAGAATCCCACAGCCCTTAATTTTGTCCCATCAACGTACAACCGACGAATGAACGTTTATGGATTGGATAGAAATCCGAATTCAACGGCATCTGGGCACCGTGGATTTC
AATTTTCTGCCACCGCTGAGGGATAGAATTCCGATAAATTCCCATATCAGACATAAGGAATCGGAATAGGATAAGATTCACAAGCTTTAACTTTTGTTTCCTTGCAGGAATATTATAAAAAAGGAAAGAAGGGGGATATTGCTTTGCAGCCGCAGGTCGAGGCCCGAGGGGTCGAATCTGTTATTGGAGTCCAACCCGAC
TACGACGACGTCAGATTCTATCGTTATCCGATACGATACGCTTGTAGTATTGCCGCGTGATAAAGCGACAGgtgggcatttgtaattttctcaccgtcctatctttgctatgttgaggacggcagaataatcttttgtgttggggttttgctttccttaagaaccgagtcggggacttcttgatattcaaggcgcgcctg
acctgtgtaaggcgcttgtgtattggttctctcttcaaattcttaggagttttttgttctgaatattgtatccgatcagGTCTGTTTTGGGGGTTGATTCCGCAGAGAGATCCGCGATTGCTCGAATGGCTTCTAAGCGCATACTGAAGGAATTGAAGGACCTGCAGAGAGACCCGCCTACGTCGTGCAGCGCAGGTCCT
GTGGCTGACGATATGTTTCATTGGCAAGCGACAATTATGGGTCCTGGTGATAGTCCGTACGCAGGAGGTGTGTTTTTAGTTACCATTCATTTTCCACCTGACTACCCATTCAAGCCTCCAAAGGTTGCCTTCAGGACAAAAGTATTTCATCCAAATATCAATAGCAATGGGAATATTTGTCTGGACATTCTCAAAGAGCA
GTGGAGTCCTGCATTAACTATTTCAAAGGTATTGCTGTCAATATGCTCATTGCTCACTGACCCGAATCCGGATGATCCTTTGGTTCCTGAAATTGCACATATGTACAAGAATGACAAGGGGAAGTATGAGGCTACTGCACGCAATTGGACCCAAAAGTATGCAATGGCCTAATTTAATATCAAT
Intron 3 GTATGAGTAC ... CTATGTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.23 | 648.8 | 107 | 222 |
| A2 | 18.39 | 650.3 | 95 | 198 |
| A3 | 18.07 | 682.3 | 110 | 191 |
| A4 | 17.84 | 472 | 101 | 104 |
| A5 | 17.46 | 338 | 58 | 85 |
| A6 | 18.64 | 7742.8 | 1065 | 2484 |
| A7 | 18.13 | 5288.5 | 706 | 1636 |
| A8 | 20.18 | 5614.8 | 783 | 2056 |
| A9 | 18.12 | 6147.3 | 827 | 1894 |
| A10 | 18.09 | 4216.8 | 594 | 1269 |
>TRINITY_DN36433_c0_g1_i7 from sample A9 / Example spliced isoformAAAACAGACCTGTCGCTTTATCACGCGGCAATACTACAAGCGTATCGTATCGGATATTGCTTTGCAGCCGCAGGTCGAGGCCCGAGGGGTCGAATCTGTTATTGGAGTCCAACCCGACTACGACGACGTCAGATTCTATCGTTATCCGATACGATACGCTTGTAGTATTGCCGCGTGATAAAGCGACAGGTGGGCATTTG
TAATTTTCTCACCGTCCTATCTTTGCTATGTTGAGGACGGCAGAATAATCTTTTGTGTTGGGGTTTTGCTTTCCTTAAGAACCGAGTCGGGGACTTCTTGATATTCAAGGCGCGCCTGACCTGTGTAAGGCGCTTGTGTATTGGTTCTCTCTTCAAATTCTTAGGAGTTTTTTGTTCTGAATATTGTATCCGATCAGGTC
TGTTTTGGGGGTTGATTCCGCAGAGAGATCCGCGATTGCTCGAATGGCTTCTAAGCGCATACTGAAGGAATTGAAGGACCTGCAGAGAGACCCGCCTACGTCGTGCAGCGCAGGTCCTGTGGCTGACGATATGTTTCATTGGCAAGCGACAATTATGGGTCCTGGTGATAGTCCGTACGCAGGAGGTGTGTTTTTAGTTA
CCATTCATTTTCCACCTGACTACCCATTCAAGCCTCCAAAGGTTGCCTTCAGGACAAAAGTATTTCATCCAAATATCAATAGCAATGGGAATATTTGTCTGGACATTCTCAAAGAGCAGTGGAGTCCTGCATTAACTATTTCAAAGGTATTGCTGTCAATATGCTCATTGCTCACTGACCCGAATCCGGATGATCCTTTG
GTTCCTGAAATTGCACATATGTACAAGAATGACAAGGGGAAGTATGAGGCTACTGCACGCAATTGGACCCAAAAGTATGCAATGGCCTAATTTAATATCAATGTAATCCAGTTATCTCCATCATATTTGAATATATGGTTTTTATTTGTGGAGACTCTTCTGACTTTAAATAAAACATTATATTTTTTTCCTTTTAACGT
TAGTTTATCATATCACACAAAAATGTAGCATGGTTGCAGTGGCTATCTTATATCGGATAAAATGTAGGATGGTTGCAGTGAATATTTACCAGTGGATAAAAATGTATGGTTGTAGTAAATATCTTCAAAAAATAGTGTAGCATTACTTCCGACATATTTATGTTGTTGAAAGTCTGCTGTTGAAAACTTACAATTTTTTT
GAATTTATAGATAGGATTGTTCTTTGGAAACTTTACTGAATTTTTTGAAAGGTGAAAAAGACACTTATACTTGCAGAAATGAGACAGCCTCGATAGGATTTTAAATATTTCTCTTTCTGAAGTTTGTTAAATTTTTTTTTTGAAGCTGTCGAGTTATAATCCCATAACTTCTGTTCTCTGATTTACTAAACAAATTAGTT
AGTACTATTATAAATGCAAGTGACATTGAGGCCACAAGTTCGCAAATGTTTTGCAATGTGCAACTATGTCAAATATTAAAGCTGGCGTTTCATTTGTCAGTTTTAGTTACCAGTTATCTTCATGTTTGTACTATTATTGAACACAAATTTGGTTTTAACGAGACATTTCTTTTCAATGATCGGATGTGATAAAACTCAAA
AGTTTGGCACTTTTGAGTCTTAATATGATTCTAAATATGATCAATAAACTAGAAAGT
>TRINITY_DN36433_c0_g1_i1 from sample A9 / Example unspliced isoform:TTAACAGCATCGGAACCAACCTCACTCCATCCTTTCGAATCTTGATTACCCCTCCATCCCTGGAATATTGACCAAATCAGAATCCCACAGCCCTTAATTTTGTCCCATCAACGTACAACCGACGAATGAACGTTTATGGATTGGATAGAAATCCGAATTCAACGGCATCTGGGCACCGTGGATTTCAATTTTCTGCCACC
GCTGAGGGATAGAATTCCGATAAATTCCCATATCAGACATAAGGAATCGGAATAGGATAAGATTCACAAGCTTTAACTTTTGTTTCCTTGCAGGAATATTATAAAAAAGGAAAGAAGGGGGATATTGCTTTGCAGCCGCAGGTCGAGGCCCGAGGGGTCGAATCTGTTATTGGAGTCCAACCCGACTACGACGACGTCAG
ATTCTATCGTTATCCGATACGATACGCTTGTAGTATTGCCGCGTGATAAAGCGACAGGTCTGTTTTGGGGGTTGATTCCGCAGAGAGATCCGCGATTGCTCGAATGGCTTCTAAGCGCATACTGAAGGAATTGAAGGACCTGCAGAGAGACCCGCCTACGTCGTGCAGCGCAGGTCCTGTGGCTGACGATATGTTTCATT
GGCAAGCGACAATTATGGGTCCTGGTGATAGTCCGTACGCAGGAGGTGTGTTTTTAGTTACCATTCATTTTCCACCTGACTACCCATTCAAGCCTCCAAAGGTTGCCTTCAGGACAAAAGTATTTCATCCAAATATCAATAGCAATGGGAATATTTGTCTGGACATTCTCAAAGAGCAGTGGAGTCCTGCATTAACTATT
TCAAAGgtatgagtacggttctgtatatcttcattgcttctttctttgtaggatgttaggtcattggtttctcacatgtctctcattaatttgttgattctatgtccagGTATTGCTGTCAATATGCTCATTGCTCACTGACCCGAATCCGGATGATCCTTTGGTTCCTGAAATTGCACATATGTACAAGAATGACAAGG
GGAAGTATGAGGCTACTGCACGCAATTGGACCCAAAAGTATGCAATGGCCTAATTTAATATCAATGTAATCCAGTTATCTCCATCATATTTGAATATATGGTTTTTATTTGTGGAGACTCTTCTGACTTTAAATAAAACATTATATTTTTTTCCTTTTAACGTTAGTTTATCATATCACACAAAAATGTAGCATGGTTGC
AGTGGCTATCTTATATCGGATAAAATGTAGGATGGTTGCAGTGAATATTTACCAGTGGATAAAAATGTATGGTTGTAGTAAATATCTTCAAAAAATAGTGTAGCATTACTTCCGACATATTTATGTTGTTGAAAGTCTGCTGTTGAAAACTTACAATTTTTTTGAATTTATAGATAGGATTGTTCTTTGGAAACTTTACT
GAATTTTTTGAAAGGTGAAAAAGACACTTATACTTGCAGAAATGAGACAGCCTCGATAGGATTTTAAATATTTCTCTTTCTGAAGTTTGTTAAATTTTTTTTTTGAAGCTGTCGAGTTATAATCCCATAACTTCTGTTCTCTGATTTACTAAACAAATTAGTTAGTACTATTATAAATGCAAGTGACATTGAGGCCACAA
GTTCGCAAATGTTTTGCAATGTGCAACTATGTCAAATATTAAAGCTGGCGTTTCATTTGTCAGTTTTAGTTACCAGTTATCTTCATGTTTGTACTATTATTGAACACAAATTTGGTTTTAACGAGACATTTCTTTTCAATGATCGGATGTGATAAAACTCAAAAGTTTGGCACTTTTGAGTCTTAATATGATTCTAAATA
TGATCAATAAACTAGAAAGT
Intron 4 GTGGGCATTT ... TTTCCTTAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 44.48 | 135 | 2 | 149 |
| A2 | 46.26 | 122 | 9 | 144.7 |
| A3 | 47.45 | 105 | 1 | 159.7 |
| A4 | 50.6 | 71 | 6 | 105.7 |
| A5 | 52.76 | 51 | 5 | 80 |
| A6 | 47.52 | 1063 | 35 | 1343 |
| A7 | 47.19 | 757 | 27 | 1012.7 |
| A8 | 48.23 | 502 | 15 | 710.7 |
| A9 | 47.37 | 881 | 26 | 1207 |
| A10 | 48.08 | 529 | 33 | 726.7 |
>TRINITY_DN39428_c1_g1_i5 from sample A6 / Example spliced isoformACCTTTTAACAGCATCGGAACCAACCTCACTCCATCCTTTCGAATCTTGATTACCCCTCCATCCCTGGAATATTGACCAAATCAGAATCCCACAGCCCTTAATTTTGTCCCATCAACGTACAACCGACGAATGAACGTTTATGGATTGGATAGAAATCCGAATTCAACGGCATCTGGGCACCGTGGATTTCAATTTTCTG
CCACCGCTGAGGGATAGAATTCCGATAAATTCCCATATCAGACATAAGGAATCGGAATAGGATAAGATTCACAAGCTTTAACTTTTGTTTCCTTGCAGGAATATTATAAAAAAGGAAAGAAGGGGGATATTGCTTTGCAGCCGCAGGTCGAGGCCCGAGGGGTCGAATCTGTTATTGGAGTCCAACCCGACTACGACGAC
GTCAGATTCTATCGTTATCCGATACGATACGCTTGTAGTATTGCCGCGTGATAAAGCGACAGAACCGAGTCGGGGACTTCTTGATATTCAAGGCGCGCCTGACCTGTAGAGATCCGCGATTGCTCGAATGGCTTCTAAGCGCATACTGAAGGAATTGAAGGACCTGCAGAGAGACCCGCCTACGTCGTGCAGCGCAGGTC
CTGTGGCTGACGATATGTTTCATTGGCAAGCGACAATTATGGGTCCTGGTGATAGTCCGTACGCAGGAGGTGTGTTTTTAGTTACCATTCATTTTCCACCTGACTACCCATTCAAGCCTCCAAAGGTTGCCTTCAGGACAAAAGTATTTCATCCAAATATCAATAGCAATGGGAATATTTGTCTGGACATTCTCAAAGAG
CAGTGGAGTCCTGCATTAACTATTTCAAAGGTATTGCTGTCAATATGCTCATTGCTCACTGACCCGAATCCGGATGATCCTTTGGTTCCTGAAATTGCACATATGTACAAGAATGACAAGGGGAAGTATGAGGCTACTGCACGCAATTGGACCCAAAAGTATGCAATGGCCTAATTTAATATCAATGTAATCCAGTTATC
TCCATCATATTTGAATATATGGTTTTTATTTGTGGAGACTCTTCTGACTTTAAATAAAACATTATATTTTTTTCCTTTTAACGTTAGTTTATCATATCACACAAAAATGTAGCATGGTTGCAGTGGCTATCTTATATCGGATAAAATGTAGGATGGTTGCAGTGAATATTTACCAGTGGATAAAAATGTATGGTTGTAGT
AAATATCTTCAAAAAATAGTGTAGCATTACTTCCGACATATTTATGTTGTTGAAAGTCTGCTGTTGAAAACTTACAATTTTTTTGAATTTATAGATAGGATTGTTCTTTGGAAACTTTACTGAATTTTTTGAAAGGTGAAAAAGACACTTATACTTGCAGAAATGAGACAGCCTCGATAGGATTTTAAATATTTCTCTTT
CTGAAGTTTGTTAAATTTTTTTTTTGAAGCTGTCGAGTTATAATCCCATAACTTCTGTTCTCTGATTTACTAAACAAATTAGTTAGTACTATTATAAATGCAAGTGACATTGAGGCC
>TRINITY_DN39428_c1_g1_i6 from sample A6 / Example unspliced isoform:ACCTTTTAACAGCATCGGAACCAACCTCACTCCATCCTTTCGAATCTTGATTACCCCTCCATCCCTGGAATATTGACCAAATCAGAATCCCACAGCCCTTAATTTTGTCCCATCAACGTACAACCGACGAATGAACGTTTATGGATTGGATAGAAATCCGAATTCAACGGCATCTGGGCACCGTGGATTTCAATTTTCTG
CCACCGCTGAGGGATAGAATTCCGATAAATTCCCATATCAGACATAAGGAATCGGAATAGGATAAGATTCACAAGCTTTAACTTTTGTTTCCTTGCAGGAATATTATAAAAAAGGAAAGAAGGGGGATATTGCTTTGCAGCCGCAGGTCGAGGCCCGAGGGGTCGAATCTGTTATTGGAGTCCAACCCGACTACGACGAC
GTCAGATTCTATCGTTATCCGATACGATACGCTTGTAGTATTGCCGCGTGATAAAGCGACAGgtgggcatttgtaattttctcaccgtcctatctttgctatgttgaggacggcagaataatcttttgtgttggggttttgctttccttaagAACCGAGTCGGGGACTTCTTGATATTCAAGGCGCGCCTGACCTGTGTA
AGGCGCTTGTGTATTGGTTCTCTCTTCAAATTCTTAGGAGTTTTTTGTTCTGAATATTGTATCCGATCAGGTCTGTTTTGGGGGTTGATTCCGCAGAGAGATCCGCGATTGCTCGAATGGCTTCTAAGCGCATACTGAAGGAATTGAAGGACCTGCAGAGAGACCCGCCTACGTCGTGCAGCGCAGGTCCTGTGGCTGAC
GATATGTTTCATTGGCAAGCGACAATTATGGGTCCTGGTGATAGTCCGTACGCAGGAGGTGTGTTTTTAGTTACCATTCATTTTCCACCTGACTACCCATTCAAGCCTCCAAAGGTTGCCTTCAGGACAAAAGTATTTCATCCAAATATCAATAGCAATGGGAATATTTGTCTGGACATTCTCAAAGAGCAGTGGAGTCC
TGCATTAACTATTTCAAAGGTATTGCTGTCAATATGCTCATTGCTCACTGACCCGAATCCGGATGATCCTTTGGTTCCTGAAATTGCACATATGTACAAGAATGACAAGGGGAAGTATGAGGCTACTGCACGCAATTGGACCCAAAAGTATGCAATGGCCTAATTTAATATCAATGTAATCCAGTTATCTCCATCATATT
TGAATATATGGTTTTTATTTGTGGAGACTCTTCTGACTTTAAATAAAACATTATATTTTTTTCCTTTTAACGTTAGTTTATCATATCACACAAAAATGTAGCATGGTTGCAGTGGCTATCTTATATCGGATAAAATGTAGGATGGTTGCAGTGAATATTTACCAGTGGATAAAAATGTATGGTTGTAGTAAATATCTTCA
AAAAATAGTGTAGCATTACTTCCGACATATTTATGTTGTTGAAAGTCTGCTGTTGAAAACTTACAATTTTTTTGAATTTATAGATAGGATTGTTCTTTGGAAACTTTACTGAATTTTTTGAAAGGTGAAAAAGACACTTATACTTGCAGAAATGAGACAGCCTCGATAGGATTTTAAATATTTCTCTTTCTGAAGTTTGT
TAAATTTTTTTTTTGAAGCTGTCGAGTTATAATCCCATAACTTCTGTTCTCTGATTTACTAAACAAATTAGTTAGTACTATTATAAATGCAAGTGACATTGAGGCC
Intron 5 GTCTGTTTTG ... GATTCCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 44.35 | 741.2 | 405.2 | 775.3 |
| A2 | 42.83 | 916.3 | 420.4 | 951.8 |
| A3 | 43.29 | 1049.6 | 488.8 | 1112.3 |
| A4 | 44.06 | 680.8 | 339.3 | 732.5 |
| A5 | 42.41 | 569.8 | 258.1 | 580.6 |
| A6 | 42.72 | 8396 | 3748.7 | 8768.6 |
| A7 | 42.38 | 6942.3 | 2950.9 | 7255.8 |
| A8 | 42.33 | 5023.9 | 2096.3 | 5275.4 |
| A9 | 42.93 | 7289 | 3377.8 | 7578.9 |
| A10 | 41.45 | 6116.3 | 2337.1 | 6319.3 |
>TRINITY_DN124966_c4_g2_i6 from sample A1 / Example spliced isoformCCTATCTTTGCTATGTTGAGGACGGCAGAATAATCTTTTGTGTTGGGGTTTTGCTTTCCTTAAGAACCGAGTCGGGGACTTCTTGATATTCAAGGCGCGCCTGACCTGTAGAGATCCGCGATTGCTCGAATGGCTTCTAAGCGCATACTGAAGGAATTGAAGGACCTGCAGAGAGACCCGCCTACGTCGTGCAGCGCAGG
TCCTGTGGCTGACGATATGTTTCATTGGCAAGCGACAATTATGGGTCCTGGTGATAGTCCGTACGCAGGAGGTGTGTTTTTAGTTACCATTCATTTTCCACCTGACTACCCATTCAAGCCTCCAAAGGTTGCCTTCAGGACAAAAGTATTTCATCCAAATATCAATAGCAATGGGAATATTTGTCTGGACATTCTCAAAG
AGCAGTGGAGTCCTGCATTAACTATTTCAAAGGTATTGCTGTCAATATGCTCATTGCTCACTGACCCGAATCCGGATGATCCTTTGGTTCCTGAAATTGCACATATGTACAAGAATGACAAGGGGAAGTATGAGGCTACTGCACGCAATTGGACCCAAAAGTATGCAATGGCCTAATTTAATATCAATGTAATCCAGTTA
TCTCCATCATATTTGAATATATGGTTTTTATTTGTGGAGACTCTTCTGACTTTAAATAAAACATTATATTTTTTTCCTTTTAACGTTAGTTTATCATATCACACAAAAATGTAGCATGGTTGCAGTGGCTATCTTATATCGGATAAAATGTAGGATGGTTGCAGTGAATATTTACCAGTGGATAAAAATGTATGGTTGTA
GTAAATATCTTCAAAAAATAGTGTAGCATTACTTCCGACATATTTATGTTGTTGAAAGTCTGCTGTTGAAAACTTACAATTTTTTTGAATTTATAGATAGGATTGTTCTTTGGAAACTTTACTGAATTTTTTGAAAGGTGAAAAAGACACTTATACTTGCAGAAATGAGACAGCCTCGAG
>TRINITY_DN124966_c4_g2_i3 from sample A1 / Example unspliced isoform:CCTATCTTTGCTATGTTGAGGACGGCAGAATAATCTTTTGTGTTGGGGTTTTGCTTTCCTTAAGAACCGAGTCGGGGACTTCTTGATATTCAAGGCGCGCCTGACCTGTgtctgttttgggggttgattccgcagAGAGATCCGCGATTGCTCGAATGGCTTCTAAGCGCATACTGAAGGAATTGAAGGACCTGCAGAGA
GACCCGCCTACGTCGTGCAGCGCAGGTCCTGTGGCTGACGATATGTTTCATTGGCAAGCGACAATTATGGGTCCTGGTGATAGTCCGTACGCAGGAGGTGTGTTTTTAGTTACCATTCATTTTCCACCTGACTACCCATTCAAGCCTCCAAAGGTTGCCTTCAGGACAAAAGTATTTCATCCAAATATCAATAGCAATGG
GAATATTTGTCTGGACATTCTCAAAGAGCAGTGGAGTCCTGCATTAACTATTTCAAAGGTATTGCTGTCAATATGCTCATTGCTCACTGACCCGAATCCGGATGATCCTTTGGTTCCTGAAATTGCACATATGTACAAGAATGACAAGGGGAAGTATGAGGCTACTGCACGCAATTGGACCCAAAAGTATGCAATGGCCT
AATTTAATATCAATGTAATCCAGTTATCTCCATCATATTTGAATATATGGTTTTTATTTGTGGAGACTCTTCTGACTTTAAATAAAACATTATATTTTTTTCCTTTTAACGTTAGTTTATCATATCACACAAAAATGTAGCATGGTTGCAGTGGCTATCTTATATCGGATAAAATGTAGGATGGTTGCAGTGAATATTTA
CCAGTGGATAAAAATGTATGGTTGTAGTAAATATCTTCAAAAAATAGTGTAGCATTACTTCCGACATATTTATGTTGTTGAAAGTCTGCTGTTGAAAACTTACAATTTTTTTGAATTTATAGATAGGATTGTTCTTTGGAAACTTTACTGAATTTTTTGAAAGGTGAAAAAGACACTTATACTTGCAGAAATGAGACAGC
CTCGAG
Intron 6 GTAAGGCGCT ... ATCCGATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 39.71 | 405.1 | 62.5 | 267 |
| A2 | 42.84 | 420.4 | 81.5 | 315.3 |
| A3 | 37.48 | 488.7 | 74.5 | 293 |
| A4 | 41.41 | 339.2 | 54.7 | 240 |
| A5 | 42.85 | 258 | 46.5 | 193.5 |
| A6 | 36.81 | 3748.1 | 567.8 | 2184.3 |
| A7 | 36.28 | 2950.5 | 371.4 | 1681.8 |
| A8 | 34.21 | 2096.2 | 235.1 | 1091.2 |
| A9 | 33.64 | 3377.2 | 401.3 | 1713.4 |
| A10 | 38.16 | 2336.6 | 263.5 | 1443.3 |
>TRINITY_DN124966_c4_g2_i3 from sample A1 / Example spliced isoformCCTATCTTTGCTATGTTGAGGACGGCAGAATAATCTTTTGTGTTGGGGTTTTGCTTTCCTTAAGAACCGAGTCGGGGACTTCTTGATATTCAAGGCGCGCCTGACCTGTGTCTGTTTTGGGGGTTGATTCCGCAGAGAGATCCGCGATTGCTCGAATGGCTTCTAAGCGCATACTGAAGGAATTGAAGGACCTGCAGAGA
GACCCGCCTACGTCGTGCAGCGCAGGTCCTGTGGCTGACGATATGTTTCATTGGCAAGCGACAATTATGGGTCCTGGTGATAGTCCGTACGCAGGAGGTGTGTTTTTAGTTACCATTCATTTTCCACCTGACTACCCATTCAAGCCTCCAAAGGTTGCCTTCAGGACAAAAGTATTTCATCCAAATATCAATAGCAATGG
GAATATTTGTCTGGACATTCTCAAAGAGCAGTGGAGTCCTGCATTAACTATTTCAAAGGTATTGCTGTCAATATGCTCATTGCTCACTGACCCGAATCCGGATGATCCTTTGGTTCCTGAAATTGCACATATGTACAAGAATGACAAGGGGAAGTATGAGGCTACTGCACGCAATTGGACCCAAAAGTATGCAATGGCCT
AATTTAATATCAATGTAATCCAGTTATCTCCATCATATTTGAATATATGGTTTTTATTTGTGGAGACTCTTCTGACTTTAAATAAAACATTATATTTTTTTCCTTTTAACGTTAGTTTATCATATCACACAAAAATGTAGCATGGTTGCAGTGGCTATCTTATATCGGATAAAATGTAGGATGGTTGCAGTGAATATTTA
CCAGTGGATAAAAATGTATGGTTGTAGTAAATATCTTCAAAAAATAGTGTAGCATTACTTCCGACATATTTATGTTGTTGAAAGTCTGCTGTTGAAAACTTACAATTTTTTTGAATTTATAGATAGGATTGTTCTTTGGAAACTTTACTGAATTTTTTGAAAGGTGAAAAAGACACTTATACTTGCAGAAATGAGACAGC
CTCGAG
>TRINITY_DN124966_c4_g2_i1 from sample A1 / Example unspliced isoform:CCTATCTTTGCTATGTTGAGGACGGCAGAATAATCTTTTGTGTTGGGGTTTTGCTTTCCTTAAGAACCGAGTCGGGGACTTCTTGATATTCAAGGCGCGCCTGACCTGTgtaaggcgcttgtgtattggttctctcttcaaattcttaggagttttttgttctgaatattgtatccgatcagGTCTGTTTTGGGGGTTGA
TTCCGCAGAGAGATCCGCGATTGCTCGAATGGCTTCTAAGCGCATACTGAAGGAATTGAAGGACCTGCAGAGAGACCCGCCTACGTCGTGCAGCGCAGGTCCTGTGGCTGACGATATGTTTCATTGGCAAGCGACAATTATGGGTCCTGGTGATAGTCCGTACGCAGGAGGTGTGTTTTTAGTTACCATTCATTTTCCAC
CTGACTACCCATTCAAGCCTCCAAAGGTTGCCTTCAGGACAAAAGTATTTCATCCAAATATCAATAGCAATGGGAATATTTGTCTGGACATTCTCAAAGAGCAGTGGAGTCCTGCATTAACTATTTCAAAGGTATTGCTGTCAATATGCTCATTGCTCACTGACCCGAATCCGGATGATCCTTTGGTTCCTGAAATTGCA
CATATGTACAAGAATGACAAGGGGAAGTATGAGGCTACTGCACGCAATTGGACCCAAAAGTATGCAATGGCCTAATTTAATATCAATGTAATCCAGTTATCTCCATCATATTTGAATATATGGTTTTTATTTGTGGAGACTCTTCTGACTTTAAATAAAACATTATATTTTTTTCCTTTTAACGTTAGTTTATCATATCA
CACAAAAATGTAGCATGGTTGCAGTGGCTATCTTATATCGGATAAAATGTAGGATGGTTGCAGTGAATATTTACCAGTGGATAAAAATGTATGGTTGTAGTAAATATCTTCAAAAAATAGTGTAGCATTACTTCCGACATATTTATGTTGTTGAAAGTCTGCTGTTGAAAACTTACAATTTTTTTGAATTTATAGATAGG
ATTGTTCTTTGGAAACTTTACTGAATTTTTTGAAAGGTGAAAAAGACACTTATACTTGCAGAAATGAGACAGCCTCGAG