sp|Q1PFH8|CDPKJ_ARATH ----> Calcium-dependent protein kinase 19

Intron 1 GTATTTTTTG ... TCGTTTCAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	80.31	44	172	187
A2	91.96	15	163	180
A3	86.09	32	201	195
A4	89.75	25	216	222
A5	84.28	18	83	110
A6	88.3	83	551	702
A7	89.9	157	1294	1502
A8	88.71	99	702	854
A9	86.42	260	1516	1792
A10	89.92	182	1499	1748

>TRINITY_DN113220_c2_g2_i7 from sample A5 / Example spliced isoform

TCCGAGTTTGTCCTTTATTTCAATTGCAATCGTTGCTTCTTCCAAAACAAGAAAGTAGCTACATATATCATACATTTTTCCTGCCTGCCTGCCTGCACTTCTTGTACTCTGCAAAAGCACTTTGCATCAGGAGAGGAGGGCAAGCAGTAAATATTCATCGTGCAATCTCAGAAGTGATCAACTTCACGAATTTGAAACCA
TGTTGCGCGCGATACAATTTCTGTGCCCTTGTTGCAGCATATGTGAGGACGATCCCAACCTTTTGGTGGACAAGGATTGTGAGATTGGGGAGCTTTTG

>TRINITY_DN113220_c2_g2_i4 from sample A5 / Example unspliced isoform:

TCCGAGTTTGTCCTTTATTTCAATTGCAATCGTTGCTTCTTCCAAAACAAGAAAGTAGCTACATATATCATACATTTTTCCTGCCTGCCTGCCTGCACTTCTTGTACTCTGCAAAAGCACTTTGCATCAGGAGAGGAGGGCAAGCAGTAAATATTCATCGTGCAATCTCAGAAGTGATCAACTTCACgtattttttgaga
ggatcatatttgttctttatctattctttggttcctaattaactgttaaagagcttctctgttctgttctttattcttgactgttaaatttgtattgtccatcgtttcaagGAATTTGAAACCATGTTGCGCGCGATACAATTTCTGTGCCCTTGTTGCAGCATATGTGAGGACGATCCCAACCTTTTGGTGGACAAGGA
TTGTGAGATTGGGGAGCTTTTGGTGGAGAAGAGATATAAGATTGAGGAGGTGATTGGGCAAGGACGGTTGGGAGTAGTGCACAAGTGCATTCACAGGAGAAACAGACAAGAATTCGCCTGTAAAATGATGCCTACTACCAAGAGTGCATATAATGAGATCACTATACTTGAAAACCACTTATACAACGGACCCCAAGGAA
TCTTGCGTATCAGAGACCACTGCTGGCTGGAGCAGGATAGATTGTCAAAGAATGTCTACATGATTTCAGAGCTCTGTGATTGTCAAAGAATGTCTACATGATTTCA

Intron 2 GTATGTTTAG ... ATTTGGAAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	87.27	49.5	321.5	335
A2	83.43	53	240.5	279.5
A3	85.5	59	331	340
A4	85.09	44.5	232	258.5
A5	86.58	21	131	126.5
A6	82.83	323.5	1479.5	1536
A7	84.36	501	2546	2723
A8	84.45	422	2104.5	2373
A9	84.32	601.5	2992.5	3298
A10	84.56	507.5	2594.5	2762

>TRINITY_DN48845_c0_g5_i3 from sample A7 / Example spliced isoform

AAGAGATATGAGATTGGGGAGGTGATTGGCCAAGGACGGTTGGGAGTAGTGCACAAGTGCATTCACAGGACAAACAGACAAGAATTCGCCTGTAAAAAGATGCCTATTACCAAGAGTGCATATAACGAGATAACTGTACTCGAAAAGCATTTATACAACGGAACCCCCGGAATCTTGAGGATCAGAGCCCACTACTGGCC
GGAGCGAGATAGATTGTCAAAGAATGCCTACATGATTTCAGAGCTCTGTGATGGAGGAGATCTTCAGCATTTACTCAACGAGCGTGGCCCCGCTATTCTTCGTCCGAGACACACGGCCGCAATAATACAATCTCTTGTCCAATCGCTTAAATTCTGCCAATCGCGGAAAGTCATTCACAGAGACGTAAAACCATCGAGCA
ATATAAATGTTGTGAGCGATAACGTGGGGACGTTGGGATTTTCTGCTCCAGAGATGCTGCGCGGAAATGGGTACTCGTACGAGGTTGATATATGGAGCGCGGGAGTCGTGTTGTATGTTCTTCTCTGTGGTAATAAACCTTTTGTCGATGCCGAGGATGACATGATGATGTATGAACAAATACAGAATACAGAACTAGAT
CTCAGCAGGGGTGTATGGAGCTCCATATCTGATTCTGCAAAGGAACTCGTTCTTGGAATGTTGGAGAAA

>TRINITY_DN48845_c0_g5_i6 from sample A7 / Example unspliced isoform:

AAGAGATATGAGATTGGGGAGGTGATTGGCCAAGGACGGTTGGGAGTAGTGCACAAGTGCATTCACAGGACAAACAGACAAGAATTCGCCTGTAAAAAGATGCCTATTACCAAGAGTGCATATAACGAGATAACTGTACTCGAAAAGCATTTATACAACGGAACCCCCGGAATCTTGAGGATCAGAGCCCACTACTGGCC
GGAGCGAGATAGATTGTCAAAGAATGCCTACATGATTTCAGAGCTCTGTGATGGAGGAGATCTTCAGCATTTACTCAACGAGCGTGGCCCCGCTATTCTTCGTCCGAGACACACGGCCGCAATAATACAATCTCTTGTCCAATCGCTTAAATTCTGCCAATCGCGGAAAGTCATTCACAGAGACGTAAAACCATCGAgta
tgtttagagcaaacagtgtatatacttcttcatgggcttttaaacttgggaattttgatttggcgatttggaaagGCAATATAAATGTTGTGAGCGATAACGTGGGGACGTTGGGATTTTCTGCTCCAGAGATGCTGCGCGGAAATGGGTACTCGTACGAGGTTGATATATGGAGCGCGGGAGTCGTGTTGTATGTTCTT
CTCTGTGGTAATAAACCTTTTGTCGATGCCGAGGATGACATGATGATGTATGAACAAATACAGAATACAGAACTAGATCTCAGCAGGGGTGTATGGAGCTCCATATCTGATTCTGCAAAGGAACTCGTTCTTGGAATGTTGGAGAAA

Intron 3 GTATTTTTAG ... ATTTGGAAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	91.98	30	334	354.3
A2	87.48	37	243	274
A3	90.61	36	348.7	346.3
A4	90.59	27	254	265.7
A5	92.13	11	129.3	128.3
A6	88.38	204	1541.7	1562
A7	88.95	340	2733.7	2741.7
A8	89.05	288	2267.7	2416
A9	89.04	395	3119	3300.7
A10	89.88	310	2718.7	2786.3

>TRINITY_DN43007_c1_g1_i10 from sample A9 / Example spliced isoform

CACAGAGACGTAAAACCATCGAGCAATATAAATGTTGTGAGCGATAACGTGGGGACGTTGGGATTTTCTGCTCCGGAGATGCTGCGTGGAAATGGGTACTCGTACGAGGTTGATATATGGAGCGCGGGAGTCGTGTTGTATGTTCTTCTCTGTGGTAATAAACCTTTTGTCGATGCCGAGGATGACATGATGATGTATGA
ACAAATACAGAATACAGAACTAGATCTCAGCAGGGGTGTATGGAGCTCCATATCTGATTCTGCAAAGGAACTCGTTCTTGGAATGTTGGAGAAAGACTGCACGCAGCGACTTTCTTGCGATGAAATTCTGT

>TRINITY_DN43007_c1_g1_i7 from sample A9 / Example unspliced isoform:

GAGCCCACTACTGGCCGGAGCGATCAGATAGATTGTCAAAGAATGTCTACATGATTTCAGAGCTCTGTGATTGTCAAAGAATGTCTACATGATTTACTCAACGAACGTGGCCAGCTTACTCTTCCTGCGAGACACACCGCCACAATAATCCAATCTCCTGTGCAATCCCTTGAATTCTGCCAATGCCGGAAAGTCATTCA
CAGAGACGTAAAACCATCGAgtatttttagagcaaagagtgtaaattcttcttcatgggcttttaaacttggaaattttgatttggcgatttggaaagGCAATATAAATGTTGTCACCGATAACGTGGGGACGTTGGGATTTTCTGCTCCGGAGATGCTGCGTGGAAATGGGTACTCGTACGAGGTTGATATATGGAGCG
CGGGAGTCGTGTTGTATGTTCTTCTCTGTGGTAATAAACCTTTTGTCGATGCCGAGGATGACATGATGATGTATGAACAAATACAGAATACAGAACTAGATCTCAGCAGGGGTGTATGGAGCTCCATATCTGATTCTGCAAAGGAACTCGTTCTTGGAATGTTGGAGAAAGACTGCACGCAGCGACTTTCTTGCGATGAA
ATTCTGT