NA ----> NA
Intron 1 GTAATCATAC ... TTTGTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.32 | 7 | 2 | 3 |
| A2 | 15.38 | 11 | 1 | 3 |
| A3 | 20 | 12 | 4 | 2 |
| A4 | 26.53 | 18 | 7 | 6 |
| A5 | 22.22 | 7 | 4 | 0 |
| A6 | 17.39 | 76 | 21 | 11 |
| A7 | 17.02 | 78 | 18 | 14 |
| A8 | 18.03 | 75 | 12 | 21 |
| A9 | 20.51 | 62 | 17 | 15 |
| A10 | 13.73 | 66 | 8 | 13 |
>TRINITY_DN42267_c0_g1_i1 from sample A10 / Example spliced isoformGGATATTCCATTTCTGTTGCTAGTTATGTACATTTGTTTCCAACCGTCCACATTTCGGCGAGCACATGTCACGAGGTTTATGGAGTCGGTGAGTTCGTCACGTAATTATTGAATTGACAATACTGATTCCTTGCAGACAATCTTGAACGCTCAGGTTACTGGGAGCGCCGTTACTGGGTCATCTTTGTCTATATCTATAA
ATAACTGGAGGGGATGGAGGAGTGGTAGTTCGATGCAAGAGATCCAGGAATCGCCACAAGCTGCGTAATCAAGGCCACTCCTGACAGTAGCTCCCAACCCGCCCCCCCCATCTTGTGGGAAGAAGGAATCTCGGTGATGGTTTCTCTTCCTCGTTCTGCTTTTGGGGGAGTGGATATGTATAGGGGAAATGATTTGGATG
CGATTTCAATGTGCATGCCCCTTGCAAATCCATGGATCCAGAGATGGTTCAAAGAGTGTATTTACACCCCATGGGAAATGGCGGGGTTCTTCATTGGCCTATCTTCGGTTATGTTCTGGATTGTGGCCCAGGTGCCTCAGTTTATGAGCAATATCTCGAGGCAGAGTGCCGATGCTCTGTCGCCCTGGTTCCTTGTTCAA
TGGCTTGCGGGGGATTCGTGTAATTTTATTGGCTGTCTTCTGACTGGCGATCAACTTATTACAGAAACCGTGACAGCAGCCTATTTTATTTGTTCAGATTTTGTTATCTTGTTTCAGTACCTGTATTATGGTTACAAGGGGCGCAGCAAGCAATTTGGAGCATATGCGTCAGATTCAGATGAATCATTGCACAAGCCACC
TAATGGATATTATGAAGCCCTTCAAAATGGCACAGCCTCACAGCTAGATAAAATATTAGAGGATTTAACTGCTGGAACAGTTATTGAAACCAAAAGGGATGCATGTGATTTTTGCCGGCTTGGAACAAATTCAGATAGGCAGGGATCCCCTACTCAAATATGTGTAAAGGGGCCTAAAATTTTTACAACCATAGATTCCC
AAAAAGTGAGTTCTGGTATGTACCAGGCAACAGGAATGAATACAGATCACTCAATTCCTGAAGACAGGAGCAGCTCTAGACATTGTTCCTGTGCCATAAGCAGGGTGGATCATTTGCGGGGGAACGCAGCATGTTCTTCACAGTCCATTGGTTTGCAGAAGCATGGACAGAATTGCTGTTTTCCAAACAAGAAAGGGGAT
GATTTGCAAAGAGTTGTTATGCAATATGGCCTAGAGTACAATATCCCTTCTGCAGTGAAATCCTCCAAAAGGCATATGCTGAGTTCAGGGAAAAATAGTGGGAATGCAGCTTCACAAGGAAGGAAGTCCCGTGCAAAAGTTGCCTTTTGCTTTACTGGTCTGTTGATCTTGGGGACCTGGAGTTGTCATTCTTTGTTGGG
TGACGCTAGCTTTGAAAGAAGCAGTGTGCCAAATGGGAACACCATTATTTCTTTAGGGAGAAGAAGCTTGAAGGAGGTGCATCAAGAAGATCAATCATTTCCACAGAGGTTACTGGGACATAGTGGGTCTGCACCATTGTGGACAAGAGATATTGGACGACTGGTTGGGTAGGATCTTTTTCTTTAAATCTCTCAAAAAT
TTGTTGATTTAGCATTGTAAATTCTTTAGTGACTATACAATAAGTAATTCCTAGAAGAGACATTCTACTCGCTTACATGCAGAACTGGGTTGAGAATAAGGGGGAATCTTTTTTGAAAGTGCTCATTGGCCTGAGGCAATAGTTTGCAGAAAGAATTTTGTTAAACTTAGTAGAATTTTGTGTACTCTTGGCAGATGGAT
CTCTTCAGCTTTGTATTTGAGTTCGCGTGTGTCACAACTACTGAAAAACAGATCAAGAAAATCAGCCGAGGGCTTATCATTGGGAATGGTAGGCTGTGCAATGATGGCAAATCTCACATATGGATTGGCAATCTTGATGCTTACAAAATCATGGGGAGATTTAGTTGGAAAGGCACCTTGGTTGGTTGGGAGTTTAGGGA
CAGTTTCTCTAGACTTCACCATGTTTATACAGGCCTATTATTTCAGATACCGCTATGGCAAGGTTACAACAGATGAGTGTAATCCACTTTTGGCATAAGTTCCCAATGGAACTATGATATCATCCATGTTCATGTTATAGAATTGAGCAATGGGTTCAATCAAACATCGATCTCATGTTATAGAATTGAGCAATGGGTTC
AATCATACATCGATCTTATAGAGGAATTTCATAACTCGTGAAATTCCTAGTTTAGGAGGGCAATTGTATATACAGTAGCTGTAAATATTATTGTGATCTCGAAAATGGAATTGGTTTAGCATTGGCATTGAATAGAATATGAATATTTTATCGTTCAACTTAAATAGACTGCTTACGTTTATACCAGAAAAAA
>TRINITY_DN42267_c0_g1_i3 from sample A10 / Example unspliced isoform:GGATATTCCATTTCTGTTGCTAGTTATGTACATTTGTTTCCAACCGTCCACATTTCGGCGAGCACATGTCACGAGGTTTATGGAGTCGGTGAGTTCGTCACGTAATTATTGAATTGACAATACTGATTCCTTGCAGACAATCTTGAACGCTCAGGTTACTGGGAGCGCCGTTACTGGGTCATCTTTGTCTATATCTATAA
ATAACTGGAGGGGATGGAGGAGTGGTAGTTCGATGCAAGAGATCCAGGAATCGCCACAAGCTGCGTAATCAAGGCCACTCCTGACAGTAGCTCCCAACCCGCCCCCCCCATCTTGTGGGAAGAAGGAATCTCGGTGATGGTTTCTCTTCCTCGTTCTGCTTTTGGGGGAGTGGATATGTATAGGGGAAATGATTTGGATG
CGATTTCAATGTGCATGCCCCTTGCAAATCCATGGATCCAGAGATGGTTCAAAGAGTGTATTTACACCCCATGGGAAATGGCGGGGTTCTTCATTGGCCTATCTTCGGTTATGTTCTGGATTGTGGCCCAGGTGCCTCAGTTTATGAGCAATATCTCGAGGCAGAGTGCCGATGCTCTGTCGCCCTGGTTCCTTGTTCAA
TGGCTTGCGGGGGATTCGTGTAATTTTATTGGCTGTCTTCTGACTGGCGATCAACTTATTACAGAAACCGTGACAGCAGCCTATTTTATTTGTTCAGATTTTGTTATCTTGTTTCAGTACCTGTATTATGGTTACAAGGGGCGCAGCAAGCAATTTGGAGCATATGCGTCAGATTCAGATGAATCATTGCACAAGCCACC
TAATGGATATTATGAAGCCCTTCAAAATGGCACAGCCTCACAGCTAGATAAAATATTAGAGGATTTAACTGCTGGAACAGTTATTGAAACCAAAAGGGATGCATGTGATTTTTGCCGGCTTGGAACAAATTCAGATAGGCAGGGATCCCCTACTCAAATATGTGTAAAGGGGCCTAAAATTTTTACAACCATAGATTCCC
AAAAAGTGAGTTCTGGTATGTACCAGGCAACAGGAATGAATACAGATCACTCAATTCCTGAAGACAGGAGCAGCTCTAGACATTGTTCCTGTGCCATAAGCAGGGTGGATCATTTGCGGGGGAACGCAGCATGTTCTTCACAGTCCATTGGTTTGCAGAAGCATGGACAGAATTGCTGTTTTCCAAACAAGAAAGGGGAT
GATTTGCAAAGAGTTGTTATGCAATATGGCCTAGAGTACAATATCCCTTCTGCAGTGAAATCCTCCAAAAGGCATATGCTGAGTTCAGGGAAAAATAGTGGGAATGCAGCTTCACAAGGAAGGAAGTCCCGTGCAAAAGTTGCCTTTTGCTTTACTGGTCTGTTGATCTTGGGGACCTGGAGTTGTCATTCTTTGTTGGG
TGACGCTAGCTTTGAAAGAAGCAGTGTGCCAAATGGGAACACCATTATTTCTTTAGGGAGAAGAAGCTTGAAGGAGGTGCATCAAGAAGATCAATCATTTCCACAGAGGTTACTGGGACATAGTGGGTCTGCACCATTGTGGACAAGAGATATTGGACGACTGGTTGGATGGATCTCTTCAGCTTTGTATTTGAGTTCGC
GTGTGTCACAACTACTGAAAAACAGATCAAGAAAATCAGCCGAGGGCTTATCATTGGGAATGGTAGGCTGTGCAATGATGGCAAATCTCACATATGGATTGGCAATCTTGATGCTTACAAAATCATGgtaatcatacaacttgtggcttatttacaaaaaacggttaagctatcagtggatactgtgtctccttttttat
tattctatgtgtagtccatacaaaggatcatgctttcaagaggttctatgaagttaatatggtcatacagcttccataatcagtattctgtttcctggttttgtttcagGGGAGATTTAGTTGGAAAGGCACCTTGGTTGGTTGGGAGTTTAGGGACAGTTTCTCTAGACTTCACCATGTTTATACAGGCCTATTATTTC
AGATACCGCTATGGCAAGGTTACAACAGATGAGTGTAATCCACTTTTGGCATAAGTTCCCAATGGAACTATGATATCATCCATGTTCATGTTATAGAATTGAGCAATGGGTTCAATCAAACATCGATCTCATGTTATAGAATTGAGCAATGGGTTCAATCATACATCGATCTTATAGAGGAATTTCATAACTCGTGAAAT
TCCTAGTTTAGGAGGGCAATTGTATATACAGTAGCTGTAAATATTATTGTGATCTCGAAAATGGAATTGGTTTAGCATTGGCATTGAATAGAATATGAATATTTTATCGTTCAACTTAAATAGACTGCTTACGTTTATACCAGAAAAAA
Intron 2 GTCAGTCATA ... TTTGATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 45 | 11 | 1.7 | 9 |
| A2 | 0 | 12 | 2.3 | 0 |
| A3 | 16.67 | 10 | 1.1 | 2 |
| A4 | 30 | 14 | 1.1 | 6 |
| A5 | 50 | 8 | 1.1 | 8 |
| A6 | 24.35 | 87 | 16.6 | 28 |
| A7 | 20.12 | 75.4 | 12.9 | 19 |
| A8 | 25.45 | 123 | 15.9 | 42 |
| A9 | 23.93 | 89 | 13.7 | 28 |
| A10 | 6.49 | 72 | 20.6 | 5 |
>TRINITY_DN37912_c0_g2_i1 from sample A7 / Example spliced isoformCCCGCCCCCCCCATCTTGTGGGAAGAAGGAATCTTGGTGATGGTTTCTCTTCCTCGTTCTGCTTTTGGGGGAGTGGATATGTATAGGGGAAATGATTTGGATGCGATTTCAATGTGCATGCCCCTTGCAAATCCATGGATCCAGAGATGGTTCAAAGAGTGTATTTACACCCCATGGGAAATGGCGGGGTTCTTCATTGG
CCTATCTTCGGTTATGTTCTGGATTGTGGCCCAGGTGCCTCAGTTTATGAGCAATATCTCGAGGCAGAGTGCCGATGCTCTGTCGCCCTGGTTCCTTGTTCAATGGCTTGCGGGGGATTCGTGTAATTTTATTGGCTGTCTTCTGACTGGCGATCAACTTATTACAGAAACCGTGACAGCAGCCTATTTTATTTGTTCAG
ATTTTGTTATCTTGTTTCAGTACCTGTATTATGGTTACAAGGGGCGCAGCAAGCAATTTGGAGCATATGCGTCAGATTCAGATGAATCATTGCACAAGCCACCTAATGGATATTATGAAGCCCTTCAAAATGGCACAGCCTCACAGCTAGATAAAATATTAGAGGATTTAACTGCTGGAACAGTTATTGAAACCAAAAGG
GATGCATGTGATTTTTGCCGGCTTGGAACAAATTCAGATAGGCAGGGATCCCCTACTCAAATATGTGTAAAGGGGCCTAAAATTTTTACAACCATAGATTCCCAAAAAGTGAGTTCTGGTATGTACCAGGCAACAGGAATGAATACAGATCACTCAATTCCTGAAGACAGGAGCAGCTCTAGACATTGTTCCTGTGCCAT
AAGCAGGGTGGATCATTTGCGGGGGAACGCAGCATGTTCTTCACAGTCCATTGGTTTGCAGAAGCATGGACAGAATTGCTGTTTTCCAAACAAGAAAGGGGATGATTTGCAAAGAGTTGTTATGCAATATGGCCTAGAGTACAATATCCCTTCTGCAGTGAAATCCTCCAAAAGGCATATGCTGAGTTCAGGGAAAAATA
GTGGGAATGCAGCTTCACAAGGAAGGAAGTCCCGTGCAAAAGTTGCCTTTTGCTTTACTGGTCTGTTGATCTTGGGGACCTGGAGTTGTCATTCTTTGTTGGGTGACGCTAGCTTTGAAAGAAGCAGTGTGCCAAATGGGAACACCATTATTTCTTTAGGGAGAAGAAGCTTGAAGGAGGTGCATCAAGAAGATCAATCA
TTTCCACAGAGGTTACTGGGACATAGTGGGTCTGCACCATTGTGGACAAGAGATATTGGACGACTGGTTGGGTAGGATCTTTTTCTTTAAATCTCTCAAAAATTTGTTGATTTAGCATTGTAAATTCTTTAGTGACTATACAATAAGTAATTCCTAGAAGAGACATTCTACTCGCTTACATGCAGAACTGGGTTGAGAAT
AAGGGGGAATCTTTTTTGAAAGTGCTCATTGGCCTGAGGCAATAGTTTGCAGAAAGAATTTTGTTAAACTTAGTAGAATTTTGTGTACTCTTGGCAGATGGATCTCTTCAGCTTTGTATTTGAGTTCGCGTGTGTCACAACTACTGAAAAACAGATCAAGAAAATCAGCCGAGGGCTTATCATTGGGAATGGTAGGCTGT
GCAATGATGGCAAATCTCACATATGGATTGGCAATCTTGATGCTTACAAAATCATGGGGAGATTTAGTTGGAAAGGCACCTTGGTTGGTTGGGAGTTTAGGGACAGTTTCTCTAGACTTCACCATGTTTATACAGGCCTATTATTTCAGATACCGCTATGGCAAGGTTACAACAGATGAGTGTAATCCACTTTTGGCATA
AGTTCCCAATGGAACTATGATATCATCCATGTTCATGTTATAGAATTGAGCAATGGGTTCAATCAAACATCGATCTCATGTTATAGAATTGAGCAATGGGTTCAATCATACATCGATCTTATAGAGGAATTTCATAACTCGTGAAATTCCTAGTTTAGGAGGGCAATTGTATATACAGTAGCTGTAAATATTATTGTGAT
CTCGAAAATGGAATTGGTTTAGCATTGGCATTGAATAGAATATGAATATTTTATCGTTCAACTTAAATAGACTGCTTACGTTTATACCAGAAGATCGTCTAGCTTCTCAACCATGGGATTATAACTTTTTCATACAAACACATTTTTTTGTAAATTATTATTTTATCCAAATTGGAAATTGATAACCTACTTTTCATTCC
AAGTACATTTATGGATAACTAC
>TRINITY_DN37912_c0_g2_i4 from sample A7 / Example unspliced isoform:CCCGCCCCCCCCATCTTGTGGGAAGAAGGAATCTTGGTGATGGTTTCTCTTCCTCGTTCTGCTTTTGGGGGAGTGGATATGTATAGGGGAAATGATTTGGATGCGATTTCAATGTGCATGCCCCTTGCAAATCCATGGATCCAGAGATGGTTCAAAGAGTGTATTTACACCCCATGGGAAATGGCGGGGTTCTTCATTGG
CCTATCTTCGGTTATGTTCTGGATTGTGGCCCAGGTGCCTCAGTTTATGAGCAATATCTCGAGGCAGAGTGCCGATGCTCTGTCGCCCTGGTTCCTTGTTCAATGGCTTGCGGGGGATTCGTGTAATTTTATTGGCTGTCTTCTGACTGGCGATCAACTTATTACAGAAACCGTGACAGCAGCCTATTTTATTTGTTCAG
ATTTTGTTATCTTGTTTCAGTACCTGTATTATGGTTACAAGGGGCGCAGCAAGCAATTTGGAGCATATGCGTCAGATTCAGATGAATCATTGCACAAGCCACCTAATGGATATTATGAAGCCCTTCAAAATGGCACAGCCTCACAGCTAGATAAAATATTAGAGGATTTAACTGCTGGAACAGTTATTGAAACCAAAAGG
GATGCATGTGATTTTTGCCGGCTTGGAACAAATTCAGATAGGCAGGGATCCCCTACTCAAATATGTGTAAAGGGGCCTAAAATTTTTACAACCATAGATTCCCAAAAAGTGAGTTCTGGTATGTACCAGGCAACAGGAATGAATACAGATCACTCAATTCCTGAAGACAGGAGCAGCTCTAGACATTGTTCCTGTGCCAT
AAGCAGGGTGGATCATTTGCGGGGGAACGCAGCATGTTCTTCACAGTCCATTGGTTTGCAGAAGCATGGACAGAATTGCTGTTTTCCAAACAAGAAAGGGGATGATTTGCAAAGAGTTGTTATGCAATATGGCCTAGAGTACAATATCCCTTCTGCAGTGAAATCCTCCAAAAGGCATATGCTGAGTTCAGGGAAAAATA
GTGGGAATGCAGCTTCACAAGGAAGGAAGTCCCGTGCAAAAGTTGCCTTTTGCTTTACTGGTCTGTTGATCTTGGGGACCTGGAGTTGTCATTCTTTGTTGGGTGACGCTAGCTTTGAAAGAAGCAGTGTGCCAAATGGGAACACCATTATTTCTTTAGGGAGAAGAAGCTTGAAGGAGGTGCATCAAGAAGATCAATCA
TTTCCACAGAGGTTACTGGGACATAGTGGGTCTGCACCATTGTGGACAAGAGATATTGGACGACTGGTTGGGTAGGATCTTTTTCTTTAAATCTCTCAAAAATTTGTTGATTTAGCATTGTAAATTCTTTAGTGACTATACAATAAGTAATTCCTAGAAGAGACATTCTACTCGCTTACATGCAGAACTGGGTTGAGAAT
AAGGGGGAATCTTTTTTGAAAGTGCTCATTGGCCTGAGGCAATAGTTTGCAGAAAGAATTTTGTTAAACTTAGTAGAATTTTGTGTACTCTTGGCAGATGGATCTCTTCAGCTTTGTATTTGAGTTCGCGTGTGTCACAACTACTGAAAAACAGATCAAGAAAATCAGCCGAGGGCTTATCATTGGGAATGGTAGGCTGT
GCAATGATGGCAAATCTCACATATGGATTGGCAATCTTGATGCTTACAAAATCATGGGGAGATTTAGTTGGAAAGGCACCTTGGTTGGTTGGGAGTTTAGGGACAGTTTCTCTAGACTTCACCATGTTTATACAGgtcagtcataattctccatatgtcacttcagcctcagattttgaagtttacaagtggtctatcgt
gttgccagccattttatctgcatatctttgtttttgtaaatttggtatgggagaaatgagaaaatatcttcatattactgcaatcattttgcatgtgcacctttggttttgtaaatttgggctggcatgatataatctctgatttattatgttcttctttgtgtttgattcagGCCTATTATTTCAGATACCGCTATGGC
AAGGTTACAACAGATGAGTGTAATCCACTTTTGGCATAAGTTCCCAATGGAACTATGATATCATCCATGTTCATGTTATAGAATTGAGCAATGGGTTCAATCAAACATCGATCTCATGTTATAGAATTGAGCAATGGGTTCAATCATACATCGATCTTATAGAGGAATTTCATAACTCGTGAAATTCCTAGTTTAGGAGG
GCAATTGTATATACAGTAGCTGTAAATATTATTGTGATCTCGAAAATGGAATTGGTTTAGCATTGGCATTGAATAGAATATGAATATTTTATCGTTCAACTTAAATAGACTGCTTACGTTTATACCAGAAGATCGTCTAGCTTCTCAACCATGGGATTATAACTTTTTCATACAAACACATTTTTTTGTAAATTATTATT
TTATCCAAATTGGAAATTGATAACCTACTTTTCATTCCAAGTACATTTATGGATAACTAC
Intron 3 GTGTGCTATC ... TTTTATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.95 | 16 | 6 | 1 |
| A2 | 29.41 | 6 | 3 | 2 |
| A3 | 16.13 | 13 | 2 | 3 |
| A4 | 29.41 | 6 | 3 | 2 |
| A5 | 33.33 | 11 | 7 | 4 |
| A6 | 29.41 | 18 | 11 | 4 |
| A7 | 20.83 | 38 | 16 | 4 |
| A8 | 21.43 | 11 | 4 | 2 |
| A9 | 21.31 | 24 | 8 | 5 |
| A10 | 19.38 | 52 | 18 | 7 |
>TRINITY_DN42050_c0_g1_i3 from sample A8 / Example spliced isoformGTTTCTCTTCCTCGTTCTGCTTTTGGGGGAGTGGATATGTATAGGGGAAATGATTTGGATGCGATTTCAATGTGCATGCCCCTTGCAAATCCATGGATCCAGAGATGGTTCAAAGAGTGTATTTACACCCCATGGGAAATGGCGGGGTTCTTCATTGGCCTATCTTCGGTTATGTTCTGGATTGTGGCCCAGGTGCCTCA
GTTTATGAGCAATATCTCGAGGCAGAGTGCCGATGCTCTGTCGCCCTGGTTCCTTGTTCAATGGCTTGCGGGGGATTCGTGTAATTTTATTGGCTGTCTTCTGACTGGCGATCAACTTATTACAGAAACCGTGACAGCAGCCTATTTTATTTGTTCAGATTTTGTTATCTTGTTTCAGTACCTGTATTATGGTTACAAGG
GGCGCAGCAAGCAATTTGGAGCATATGCGTCAGATTCAGATGAATCATTGCACAAGCCACCTAATGGATATTATGAAGCCCTTCAAAATGGCACAGCCTCACAGCTAGATAAAATATTAGAGGATTTAACTGCTGGAACAGTTATTGAAACCAAAAGGGATGCATGTGATTTTTGCCGGCTTGGAACAAATTCAGATAGG
CAGGGATCCCCTACTCAAATATGTGTAAAGGGGCCTAAAATTTTTACAACCATAGATTCCCAAAAAGTGAGTTCTGGTATGTACCAGGCAACAGGAATGAATACAGATCACTCAATTCCTGAAGACAGGAGCAGCTCTAGACATTGTTCCTGTGCCATAAGCAGGGTGGATCATTTGCGGGGGAACGCAGCATGTTCTTC
ACAGTCCATTGGTTTGCAGAAGCATGGACAGAATTGCTGTTTTCCAAACAAGAAAGGGGATGATTTGCAAAGAGTTGTTATGCAATATGGCCTAGAGTACAATATCCCTTCTGCAGTGAAATCCTCCAAAAGGCATATGCTGAGTTCAGGGAAAAATAGTGGGAATGCAGCTTCACAAGGAAGGAAGTCCCGTGCAAAAG
TTGCCTTTTGCTTTACTGGTCTGTTGATCTTGGGGACCTGGAGTTGTCATTCTTTGTTGGGTGACGCTAGCTTTGAAAGAAGCAGTGTGCCAAATGGGAACACCATTATTTCTTTAGGGAGAAGAAGCTTGAAGGAGGTGCATCAAGAAGATCAATCATTTCCACAGAGGTTACTGGGACATAGTGGGTCTGCACCATTG
TGGACAAGAGATATTGGACGACTGGTTGGATGGATCTCTTCAGCTTTGTATTTGAGTTCGCGTGTGTCACAACTACTGAAAAACAGATCAAGAAAATCAGCCGAGGGCTTATCATTGGGAATGGTAGGCTGTGCAATGATGGCAAATCTCACATATGGATTGGCAATCTTGATGCTTACAAAATCATGGGGAGATTTAGT
TGGAAAGGCACCTTGGTTGGTTGGGAGTTTAGGGACAGTTTCTCTAGACTTCACCATGTTTATACAGGCCTATTATTTCAGATACCGCTATGGCAAGGTTACAACAGATGAGTGTAATCCACTTTTGGCATAAGTTCCCAATGGAACTATGATATCATCCATGTTCATGTTATAGAATTGAGCAATGGGTTCAATCAAAC
ATCGATCTCATGTTATAGAATTGAGCAATGGGTTCAATCATACATCGATCTTATAGAGGAATTTCATAACTCGTGAAATTCCTAGTTTAGGAGGGCAATTGTATATACAGTAGCTGTAAATATTATTGTGATCTCGAAAATGGAATTGGTTTAGCATTGGCATTGAATAGAATATGAATATTTTATCGTTCAACTTAAAT
AGACTGCTTACGTTTATACCAGAAGATCGTCTAGCTTCTCAACCATGGGATTATAACTTTTTCATACAAACACATTTTTTTGTAAATTATTATTTTATCCAAATTGGAAATTGATAACCTACTTTTCATTCCAAGTACATTTATGGATAACTACATACTTTTCGTT
>TRINITY_DN42050_c0_g1_i2 from sample A8 / Example unspliced isoform:GTTTCTCTTCCTCGTTCTGCTTTTGGGGGAGTGGATATGTATAGGGGAAATGATTTGGATGCGATTTCAATGTGCATGCCCCTTGCAAATCCATGGATCCAGAGATGGTTCAAAGAGTGTATTTACACCCCATGGGAAATGGCGGGGTTCTTCATTGGCCTATCTTCGGTTATGTTCTGGATTGTGGCCCAGGTGCCTCA
GTTTATGAGCAATATCTCGAGGCAGAGTGCCGATGCTCTGTCGCCCTGGTTCCTTGTTCAATGGCTTGCGGGGGATTCGTGTAATTTTATTGGCTGTCTTCTGACTGGCGATCAACTTATTACAGAAACCGTGACAGCAGCCTATTTTATTTGTTCAGATTTTGTTATCTTGTTTCAGTACCTGTATTATGGTTACAAGG
GGCGCAGCAAGCAATTTGGAGCATATGCGTCAGATTCAGATGAATCATTGCACAAGCCACCTAATGGATATTATGAAGCCCTTCAAAATGGCACAGCCTCACAGCTAGATAAAATATTAGAGGATTTAACTGCTGGAACAGgtgtgctatctttttataaaaccaaagcttgttctaccaaatttgcaatgagaaaacaa
ataaaaaatctgggtcttttaacatagaatagtgtgcaaaaatatgattttccgacatcattgctaattgcatcatgttttattcagTTATTGAAACCAAAAGGGATGCATGTGATTTTTGCCGGCTTGGAACAAATTCAGATAGGCAGGGATCCCCTACTCAAATATGTGTAAAGGGGCCTAAAATTTTTACAACCATA
GATTCCCAAAAAGTGAGTTCTGGTATGTACCAGGCAACAGGAATGAATACAGATCACTCAATTCCTGAAGACAGGAGCAGCTCTAGACATTGTTCCTGTGCCATAAGCAGGGTGGATCATTTGCGGGGGAACGCAGCATGTTCTTCACAGTCCATTGGTTTGCAGAAGCATGGACAGAATTGCTGTTTTCCAAACAAGAA
AGGGGATGATTTGCAAAGAGTTGTTATGCAATATGGCCTAGAGTACAATATCCCTTCTGCAGTGAAATCCTCCAAAAGGCATATGCTGAGTTCAGGGAAAAATAGTGGGAATGCAGCTTCACAAGGAAGGAAGTCCCGTGCAAAAGTTGCCTTTTGCTTTACTGGTCTGTTGATCTTGGGGACCTGGAGTTGTCATTCTT
TGTTGGGTGACGCTAGCTTTGAAAGAAGCAGTGTGCCAAATGGGAACACCATTATTTCTTTAGGGAGAAGAAGCTTGAAGGAGGTGCATCAAGAAGATCAATCATTTCCACAGAGGTTACTGGGACATAGTGGGTCTGCACCATTGTGGACAAGAGATATTGGACGACTGGTTGGATGGATCTCTTCAGCTTTGTATTTG
AGTTCGCGTGTGTCACAACTACTGAAAAACAGATCAAGAAAATCAGCCGAGGGCTTATCATTGGGAATGGTAGGCTGTGCAATGATGGCAAATCTCACATATGGATTGGCAATCTTGATGCTTACAAAATCATGGGGAGATTTAGTTGGAAAGGCACCTTGGTTGGTTGGGAGTTTAGGGACAGTTTCTCTAGACTTCAC
CATGTTTATACAGGCCTATTATTTCAGATACCGCTATGGCAAGGTTACAACAGATGAGTGTAATCCACTTTTGGCATAAGTTCCCAATGGAACTATGATATCATCCATGTTCATGTTATAGAATTGAGCAATGGGTTCAATCAAACATCGATCTCATGTTATAGAATTGAGCAATGGGTTCAATCATACATCGATCTTAT
AGAGGAATTTCATAACTCGTGAAATTCCTAGTTTAGGAGGGCAATTGTATATACAGTAGCTGTAAATATTATTGTGATCTCGAAAATGGAATTGGTTTAGCATTGGCATTGAATAGAATATGAATATTTTATCGTTCAACTTAAATAGACTGCTTACGTTTATACCAGAAGATCGTCTAGCTTCTCAACCATGGGATTAT
AACTTTTTCATACAAACACATTTTTTTGTAAATTATTATTTTATCCAAATTGGAAATTGATAACCTACTTTTCATTCCAAGTACATTTATGGATAACTACATACTTTTCGTT
Intron 4 GTAGGATCTT ... CTCTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.27 | 4 | 2 | 1 |
| A2 | 22.45 | 19 | 3 | 8 |
| A3 | 24.59 | 23 | 4 | 11 |
| A4 | 23.08 | 25 | 7 | 8 |
| A5 | 28.57 | 5 | 0 | 4 |
| A6 | 21.31 | 48 | 7 | 19 |
| A7 | 20.73 | 65 | 10 | 24 |
| A8 | 20.78 | 61 | 10 | 22 |
| A9 | 19.51 | 33 | 5 | 11 |
| A10 | 20 | 40 | 7 | 13 |
>TRINITY_DN37912_c0_g2_i2 from sample A7 / Example spliced isoformCCCGCCCCCCCCATCTTGTGGGAAGAAGGAATCTTGGTGATGGTTTCTCTTCCTCGTTCTGCTTTTGGGGGAGTGGATATGTATAGGGGAAATGATTTGGATGCGATTTCAATGTGCATGCCCCTTGCAAATCCATGGATCCAGAGATGGTTCAAAGAGTGTATTTACACCCCATGGGAAATGGCGGGGTTCTTCATTGG
CCTATCTTCGGTTATGTTCTGGATTGTGGCCCAGGTGCCTCAGTTTATGAGCAATATCTCGAGGCAGAGTGCCGATGCTCTGTCGCCCTGGTTCCTTGTTCAATGGCTTGCGGGGGATTCGTGTAATTTTATTGGCTGTCTTCTGACTGGCGATCAACTTATTACAGAAACCGTGACAGCAGCCTATTTTATTTGTTCAG
ATTTTGTTATCTTGTTTCAGTACCTGTATTATGGTTACAAGGGGCGCAGCAAGCAATTTGGAGCATATGCGTCAGATTCAGATGAATCATTGCACAAGCCACCTAATGGATATTATGAAGCCCTTCAAAATGGCACAGCCTCACAGCTAGATAAAATATTAGAGGATTTAACTGCTGGAACAGTTATTGAAACCAAAAGG
GATGCATGTGATTTTTGCCGGCTTGGAACAAATTCAGATAGGCAGGGATCCCCTACTCAAATATGTGTAAAGGGGCCTAAAATTTTTACAACCATAGATTCCCAAAAAGTGAGTTCTGGTATGTACCAGGCAACAGGAATGAATACAGATCACTCAATTCCTGAAGACAGGAGCAGCTCTAGACATTGTTCCTGTGCCAT
AAGCAGGGTGGATCATTTGCGGGGGAACGCAGCATGTTCTTCACAGTCCATTGGTTTGCAGAAGCATGGACAGAATTGCTGTTTTCCAAACAAGAAAGGGGATGATTTGCAAAGAGTTGTTATGCAATATGGCCTAGAGTACAATATCCCTTCTGCAGTGAAATCCTCCAAAAGGCATATGCTGAGTTCAGGGAAAAATA
GTGGGAATGCAGCTTCACAAGGAAGGAAGTCCCGTGCAAAAGTTGCCTTTTGCTTTACTGGTCTGTTGATCTTGGGGACCTGGAGTTGTCATTCTTTGTTGGGTGACGCTAGCTTTGAAAGAAGCAGTGTGCCAAATGGGAACACCATTATTTCTTTAGGGAGAAGAAGCTTGAAGGAGGTGCATCAAGAAGATCAATCA
TTTCCACAGAGGTTACTGGGACATAGTGGGTCTGCACCATTGTGGACAAGAGATATTGGACGACTGGTTGGATGGATCTCTTCAGCTTTGTATTTGAGTTCGCGTGTGTCACAACTACTGAAAAACAGATCAAGAAAATCAGCCGAGGGCTTATCATTGGGAATGGTAGGCTGTGCAATGATGGCAAATCTCACATATGG
ATTGGCAATCTTGATGCTTACAAAATCATGGGGAGATTTAGTTGGAAAGGCACCTTGGTTGGTTGGGAGTTTAGGGACAGTTTCTCTAGACTTCACCATGTTTATACAGGTCAGTCATAATTCTCCATATGTCACTTCAGCCTCAGATTTTGAAGTTTACAAGTGGTCTATCGTGTTGCCAGCCATTTTATCTGCATATC
TTTGTTTTTGTAAATTTGGTATGGGAGAAATGAGAAAATATCTTCATATTACTGCAATCATTTTGCATGTGCACCTTTGGTTTTGTAAATTTGGGCTGGCATGATATAATCTCTGATTTATTATGTTCTTCTTTGTGTTTGATTCAGGCCTATTATTTCAGATACCGCTATGGCAAGGTTACAACAGATGAGTGTAATCC
ACTTTTGGCATAAGTTCCCAATGGAACTATGATATCATCCATGTTCATGTTATAGAATTGAGCAATGGGTTCAATCAAACATCGATCTCATGTTATAGAATTGAGCAATGGGTTCAATCATACATCGATCTTATAGAGGAATTTCATAACTCGTGAAATTCCTAGTTTAGGAGGGCAATTGTATATACAGTAGCTGTAAA
TATTATTGTGATCTCGAAAATGGAATTGGTTTAGCATTGGCATTGAATAGAATATGAATATTTTATCGTTCAACTTAAATAGACTGCTTACGTTTATACCAGAAGATCGTCTAGCTTCTCAACCATGGGATTATAACTTTTTCATACAAACACATTTTTTTGTAAATTATTATTTTATCCAAATTGGAAATTGATAACCT
ACTTTTCATTCCAAGTACATTTATGGATAACTAC
>TRINITY_DN37912_c0_g2_i4 from sample A7 / Example unspliced isoform:CCCGCCCCCCCCATCTTGTGGGAAGAAGGAATCTTGGTGATGGTTTCTCTTCCTCGTTCTGCTTTTGGGGGAGTGGATATGTATAGGGGAAATGATTTGGATGCGATTTCAATGTGCATGCCCCTTGCAAATCCATGGATCCAGAGATGGTTCAAAGAGTGTATTTACACCCCATGGGAAATGGCGGGGTTCTTCATTGG
CCTATCTTCGGTTATGTTCTGGATTGTGGCCCAGGTGCCTCAGTTTATGAGCAATATCTCGAGGCAGAGTGCCGATGCTCTGTCGCCCTGGTTCCTTGTTCAATGGCTTGCGGGGGATTCGTGTAATTTTATTGGCTGTCTTCTGACTGGCGATCAACTTATTACAGAAACCGTGACAGCAGCCTATTTTATTTGTTCAG
ATTTTGTTATCTTGTTTCAGTACCTGTATTATGGTTACAAGGGGCGCAGCAAGCAATTTGGAGCATATGCGTCAGATTCAGATGAATCATTGCACAAGCCACCTAATGGATATTATGAAGCCCTTCAAAATGGCACAGCCTCACAGCTAGATAAAATATTAGAGGATTTAACTGCTGGAACAGTTATTGAAACCAAAAGG
GATGCATGTGATTTTTGCCGGCTTGGAACAAATTCAGATAGGCAGGGATCCCCTACTCAAATATGTGTAAAGGGGCCTAAAATTTTTACAACCATAGATTCCCAAAAAGTGAGTTCTGGTATGTACCAGGCAACAGGAATGAATACAGATCACTCAATTCCTGAAGACAGGAGCAGCTCTAGACATTGTTCCTGTGCCAT
AAGCAGGGTGGATCATTTGCGGGGGAACGCAGCATGTTCTTCACAGTCCATTGGTTTGCAGAAGCATGGACAGAATTGCTGTTTTCCAAACAAGAAAGGGGATGATTTGCAAAGAGTTGTTATGCAATATGGCCTAGAGTACAATATCCCTTCTGCAGTGAAATCCTCCAAAAGGCATATGCTGAGTTCAGGGAAAAATA
GTGGGAATGCAGCTTCACAAGGAAGGAAGTCCCGTGCAAAAGTTGCCTTTTGCTTTACTGGTCTGTTGATCTTGGGGACCTGGAGTTGTCATTCTTTGTTGGGTGACGCTAGCTTTGAAAGAAGCAGTGTGCCAAATGGGAACACCATTATTTCTTTAGGGAGAAGAAGCTTGAAGGAGGTGCATCAAGAAGATCAATCA
TTTCCACAGAGGTTACTGGGACATAGTGGGTCTGCACCATTGTGGACAAGAGATATTGGACGACTGGTTGGgtaggatctttttctttaaatctctcaaaaatttgttgatttagcattgtaaattctttagtgactatacaataagtaattcctagaagagacattctactcgcttacatgcagaactgggttgagaat
aagggggaatcttttttgaaagtgctcattggcctgaggcaatagtttgcagaaagaattttgttaaacttagtagaattttgtgtactcttggcagATGGATCTCTTCAGCTTTGTATTTGAGTTCGCGTGTGTCACAACTACTGAAAAACAGATCAAGAAAATCAGCCGAGGGCTTATCATTGGGAATGGTAGGCTGT
GCAATGATGGCAAATCTCACATATGGATTGGCAATCTTGATGCTTACAAAATCATGGGGAGATTTAGTTGGAAAGGCACCTTGGTTGGTTGGGAGTTTAGGGACAGTTTCTCTAGACTTCACCATGTTTATACAGGTCAGTCATAATTCTCCATATGTCACTTCAGCCTCAGATTTTGAAGTTTACAAGTGGTCTATCGT
GTTGCCAGCCATTTTATCTGCATATCTTTGTTTTTGTAAATTTGGTATGGGAGAAATGAGAAAATATCTTCATATTACTGCAATCATTTTGCATGTGCACCTTTGGTTTTGTAAATTTGGGCTGGCATGATATAATCTCTGATTTATTATGTTCTTCTTTGTGTTTGATTCAGGCCTATTATTTCAGATACCGCTATGGC
AAGGTTACAACAGATGAGTGTAATCCACTTTTGGCATAAGTTCCCAATGGAACTATGATATCATCCATGTTCATGTTATAGAATTGAGCAATGGGTTCAATCAAACATCGATCTCATGTTATAGAATTGAGCAATGGGTTCAATCATACATCGATCTTATAGAGGAATTTCATAACTCGTGAAATTCCTAGTTTAGGAGG
GCAATTGTATATACAGTAGCTGTAAATATTATTGTGATCTCGAAAATGGAATTGGTTTAGCATTGGCATTGAATAGAATATGAATATTTTATCGTTCAACTTAAATAGACTGCTTACGTTTATACCAGAAGATCGTCTAGCTTCTCAACCATGGGATTATAACTTTTTCATACAAACACATTTTTTTGTAAATTATTATT
TTATCCAAATTGGAAATTGATAACCTACTTTTCATTCCAAGTACATTTATGGATAACTAC