sp|Q8LGI3|ARC2A_ARATH ----> Actin-related protein 2/3 complex subunit 2A
Intron 1 GTACACTGTT ... AACTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.08 | 45 | 8.2 | 15.1 |
| A2 | 33.51 | 47 | 10.1 | 23.7 |
| A3 | 27.85 | 36 | 11.4 | 13.9 |
| A4 | 29.05 | 24 | 6.3 | 9.8 |
| A5 | 17.65 | 14 | 2.6 | 3 |
| A6 | 22.03 | 109 | 16.4 | 30.8 |
| A7 | 20 | 160 | 21.4 | 40 |
| A8 | 23.34 | 187.7 | 40 | 57.1 |
| A9 | 19.07 | 211 | 23.2 | 49.7 |
| A10 | 22.63 | 122.3 | 29.5 | 35.8 |
>TRINITY_DN116802_c2_g1_i11 from sample A1 / Example spliced isoformCACCAGCATTACAAGGTGGCGCCGAACACTCATTCTTGCGTGTGATCTAAGGGAAGCCAGGAAAAGAGCAGGGGTCTTGTGGATCAACGATTCCTCCGAGTAGTTGTGTTGGCAGTAGGCAACGCCAGTATGAGGAAGAAGAAGCAGCAGAGTCTTTTCCAGACGCCTTCGCGGATTCTTGTTGAAATTCTTATGGATCG
AATGCACAATATAGACAAGGCTGTGGAAGTGGATTACCATTTAGTGGAGTTTGATGATGTCAGGTATCATATTCAGTCTTCAATTTCAGATCCGCAGTACATGGAGATTTCAATTGCAGTTCCATCTCTTTCTCGAGAAACTGTTTTTCCTACTGGGCTTCCGCTTGGTGCAATAGAAGCTGTCAAAGGAGCATATGGTT
ATGTCATGCAGATCATTGATCCTCCGGAAGAAGGCTTTCACCTCACACTAAACCTAGACTTGTCAAAATTTCCATCAAATGAAGATACTCGAATACTGTTGATCACAAAGATTGCATCTTTACGAGCAGTGGTTTTAGGTGCACCTATGAGGGATATTTTGAAGAACCTTACTTCCAAAGAATTTGTTACTAGTGGAAAT
CAAGTTATTTCACTTACACAACACCCAAAGGAGAATTTGTTTCTTATTCCCTTGCCAGACAAGGTGATCGTCGTGGTTCCAGTGCACTTTAAGGATAGCACTGATGCAGTAATTGCAACTTCCTTTTTACAGCAATTCATGGAGGCGAGGCGCAGTTCAGGATTCAATAAAGCACCACCTTGTGTTTGGTCTGCAACACC
ACCTTTAGAGATGAAAGAAGCACCATTCTATACATTGGGTGCTAATGCAGGATTTGTATCTTTTGTGATATTTCCTCATCATGTTGAAGGCAGTAAACTGGACAAGATTGTTTGGACTTTATTGAGCTTTCATGCATATATAAATCACCATATAAAGTGTTCAAAAGTTTTCATGCATACTGTAATGCGGAGGGGTGTAG
AGAAATTGATTCAGGCATTGAATCAAACAAAACTACATGCGGGGGAAGAAAAAAAGACAACACAAGGACTTGGATGTGTACGAAAATTATGGAGGCATCCAAATCCTCAATCTCCCAAGAAAGTTGGTGGCTATCACATGAGACAAGTAACTAAGCACCGAGTTTGAAATATACAAAGACCAAATAATTTGAGGAAGTAG
AATGAACGCTGATCAAATTCAATGGAACTATTTGAAATTCAAGAATTGAGTGCAAGTATGGAAACTGATAGTAGAATTGATCGGTGGGAGTCGAGGTCGAGTATGGCGATAACCAAAGGTGCTTGGTCATATATCAACTCTTTAGGAATTTGAGGCTGAGTTGGTGATAGTGGTCAAGCATTGACAATTAATTGACTTGA
TGTTCCTACATATAAGAGCATTTGGGCTCTAATCTTTAATTTTTTCAATCAGTGTTGAAGAGCTTTCCCTAAGAGTTGTATGTGTGATGTATTACAATATATTAATACATTTGTT
>TRINITY_DN116802_c2_g1_i2 from sample A1 / Example unspliced isoform:CACCAGCATTACAAGGTGGCGCCGAACACTCATTCTTGCGTGTGATCTAAGGGAAGCCAGGAAAAGAGCAGGGGTCTTGTGGATCAACGATTCCTCCGAGTAGTTGTGTTGGCAGTAGGCAACGCCAGTATGAGGAAGAAGAAGCAGCAGAGTCTTTTCCAGACGCCTTCGCGGATTCTTGTTGAAATTCTTATGGATCG
AATGCACAATCTTCAATTTCAGATCCGCAGTACATGGAGATTTCAATTGCAGTTCCATCTCTTTCTCGAGAAACTGTTTTTCCTACTGGGCTTCCGCTTGGTGCAATAGAAGCTGTCAAAGGAGCATATGGTTATGTCATGCAGATCATTGATCCTCCGGAAGAAGGCTTTCACCTCACACTAAACCTAGACTTGTCAAA
ATTTCCATCAAATGAAGATACTCGAATACTGTTGATCACAAAGATTGCATCTTTACGAGCAGTGGTTTTAGGTGCACCTATGAGGGATATTTTGAAGAACCTTACTTCCAAAGAATTTGTTACTAGTGGAAATCAAGTTATTTCACTTACACAACACCCAAAGGAGAATTTGTTTCTTATTCCCTTGCCAGACAAGGTGA
TCGTCGTGGTTCCAGTGCACTTTAAGGATAGCACTGATGCAGTAATTGCAACTTCCTTTTTACAGgtacactgttattcttgggatatcttggtttttccaaagcatatggtaacttcatgctaataaactgtgcagCAATTCATGGAGGCGAGGCGCAGTTCAGGATTCAATAAAGCACCACCTTGTGTTTGGTCTGCA
ACACCACCTTTAGAGATGAAAGAAGCACCATTCTATACATTGGGTGCTAATGCAGGATTTGTATCTTTTGTGATATTTCCTCATCATGTTGAAGGCAGTAAACTGGACAAGATTGTTTGGACTTTATTGAGCTTTCATGCATATATAAATCACCATATAAAGTGTTCAAAAGTTTTCATGCATACTGTAATGCGGAGGGG
TGTAGAGAAATTGATTCAGGCATTGAATCAAACAAAACTACATGCGGGGGAAGAAAAAAAGACAACACAAGGACTTGGATGTGTACGAAAATTATGGAGGCATCCAAATCCTCAATCTCCCAAGAAAGTTGGTGGCTATCACATGAGACAAGTAACTAAGCACCGAGTTTGAAATATACAAAGACCAAATAATTTGAGGA
AGTAGAATGAACGCTGATCAAATTCAATGGAACTATTTGAAATTCAAGAATTGAGTGCAAGTATGGAAACTGATAGTAGAATTGATCGGTGGGAGTCGAGGTCGAGTATGGCGATAACCAAAGGTGCTTGGTCATATATCAACTCTTTAGGAATTTGAGGCTGAGTTGGTGATAGTGGTCAAGCATTGACAATTAATTGA
CTTGATGTTCCTACATATAAGAGCATTTGGGCTCTAATCTTTAATTTTTTCAATCAGTGTTGAAGAGCTTTCCCTAAGAGTTGTATGTGTGATGTATTACAATATATTAATACATTTGTT
Intron 2 GTATTTTCCA ... CCATATAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 72.22 | 15 | 10 | 39 |
| A2 | 77.14 | 8 | 9 | 27 |
| A3 | 73.53 | 9 | 5 | 25 |
| A4 | 61.54 | 10 | 6 | 16 |
| A5 | 75 | 2 | 3 | 6 |
| A6 | 67.36 | 63 | 36 | 130 |
| A7 | 67.63 | 78 | 43 | 163 |
| A8 | 71.29 | 89 | 53 | 221 |
| A9 | 68.66 | 84 | 54 | 184 |
| A10 | 71.14 | 58 | 33 | 143 |
>TRINITY_DN45667_c0_g1_i1 from sample A10 / Example spliced isoformCTTTCTTTAACGTTGAAGAAAGAGTACGCAAACAAGAGTGGTTTTCTTTATATTATTATATATTAATTTTACCGTACCTCAACATCGAAATAACACCAGCATTACAAGGTGGCGCCGAACACTCATTCTTGCGTGTGATCTAAGGGAAGCCAGGAAAAGAGCAGGGGTCTTGTGGATCAACGATTCCTCCGAGTAGTTGT
GTTGGCAGTAGGCAACGCCAGTATGAGGAAGAAGAAGCAGCAGAGTCTTTTCCAGACGCCTTCGCGGATTCTTGTTGAAATTCTTATGGATCGAATGCACAATATAGACAAGGCTGTGGAAGTGGATTACCATTTAGTGGAGTTTGATGATGTCAGGTATCATATTCAGTCTTCAATTTCAGATCCGCAGTACATGGAGA
TTTCAATTGCAGTTCCATCTCTTTCTCGAGAAACTGTTTTTCCTACTGGGCTTCCGCTTGGTGCAATAGAAGCTGTCAAAGGAGCATATGGTTATGTCATGCAGATCATTGATCCTCCGGAAGAAGGCTTTCACCTCACACTAAACCTAGACTTGTCAAAATTTCCATCAAATGAAGATACTCGAATACTGTTGATCACA
AAGATTGCATCTTTACGAGCAGTGGTTTTAGGTGCACCTATGAGGGATATTTTGAAGAACCTTACTTCCAAAGAATTTGTTACTAGTGGAAATCAAGTTATTTCACTTACACAACACCCAAAGGAGAATTTGTTTCTTATTCCCTTGCCAGACAAGGTGATCGTCGTGGTTCCAGTGCACTTTAAGGATAGCACTGATGC
AGTAATTGCAACTTCCTTTTTACAGCAATTCATGGAGGCGAGGCGCAGTTCAGGATTCAATAAAGCACCACCTTGTGTTTGGTCTGCAACACCACCTTTAGAGATGAAAGAAGCACCATTCTATACATTGGGTGCTAATGCAGGATTTGTATCTTTTGTGTTCAAAAGTTTTCATGCATACTGTAATGCGGAGGGGTGTA
GAGAAATTGATTCAGGCATTGAATCAAACAAAACTACATGCGGGGGAAGAAAAAAAGACAACACAAGGACTTGGATGTGTACGAAAATTATGGAGGCATCCAAATCCTCAATCTCCCAAGAAAGTTGGTGGCTATCACATGAGACAAGTAACTAAGGTTAGTGTACCGATTCAATTACAAAGAACTAAACAATATCGAAA
ACGACGGGTACCATGGCGTTGCTTGAAGGTTCCTAAGATATATTCTTTGAGCAAATATGCAAGATGACTTTGTGAGATTCAATTAAATATATTTGTAATTTGAGTTGTAAATGTTATATTTAAGACTTATTTTAAGGGTTCCACCCTGAACCATTGGTATGTGTCTAGGCATTATGATAGTTAAAATTGAATATAAAAAT
ATACGATTCTAATTAATTTTCTTCAAATAAGAGATTAAAAGCTAGATTACAATTAAAATCAACAAATGAATGTGTAATGGCACCATTATATAGCAT
>TRINITY_DN45667_c0_g1_i4 from sample A10 / Example unspliced isoform:CTTTCTTTAACGTTGAAGAAAGAGTACGCAAACAAGAGTGGTTTTCTTTATATTATTATATATTAATTTTACCGTACCTCAACATCGAAATAACACCAGCATTACAAGGTGGCGCCGAACACTCATTCTTGCGTGTGATCTAAGGGAAGCCAGGAAAAGAGCAGGGGTCTTGTGGATCAACGATTCCTCCGAGTAGTTGT
GTTGGCAGTAGGCAACGCCAGTATGAGGAAGAAGAAGCAGCAGAGTCTTTTCCAGACGCCTTCGCGGATTCTTGTTGAAATTCTTATGGATCGAATGCACAATATAGACAAGGCTGTGGAAGTGGATTACCATTTAGTGGAGTTTGATGATGTCAGGTATCATATTCAGTCTTCAATTTCAGATCCGCAGTACATGGAGA
TTTCAATTGCAGTTCCATCTCTTTCTCGAGAAACTGTTTTTCCTACTGGGCTTCCGCTTGGTGCAATAGAAGCTGTCAAAGGAGCATATGGTTATGTCATGCAGATCATTGATCCTCCGGAAGAAGGCTTTCACCTCACACTAAACCTAGACTTGTCAAAATTTCCATCAAATGAAGATACTCGAATACTGTTGATCACA
AAGATTGCATCTTTACGAGCAGTGGTTTTAGGTGCACCTATGAGGGATATTTTGAAGAACCTTACTTCCAAAGAATTTGTTACTAGTGGAAATCAAGTTATTTCACTTACACAACACCCAAAGGAGAATTTGTTTCTTATTCCCTTGCCAGACAAGGTGATCGTCGTGGTTCCAGTGCACTTTAAGGATAGCACTGATGC
AGTAATTGCAACTTCCTTTTTACAGGTACACTGTTATTCTTGGGATATCTTGGTTTTTCCAAAGCATATGGTAACTTCATGCTAATAAACTGTGCAGCAATTCATGGAGGCGAGGCGCAGTTCAGGATTCAATAAAGCACCACCTTGTGTTTGGTCTGCAACACCACCTTTAGAGATGAAAGAAGCACCATTCTATACAT
TGGGTGCTAATGCAGGATTTGTATCTTTTGgtattttccaagcattctcctcattgtttcttttgcacagcatttcagtcgatgcaaatcctaagatgactccttatatgtttgaagattgtttcttgatcaatatgctatgttgtaggaggcatcattatgaacaagttatgtaggcaatgcaataagtttggcaattt
gaaattaagtaatacccgatctcaaaattaatgcagcttaacacatctgtcatttgttaaatttttgtagtgatatttcctcatcatgttgaaggcagtaaactggacaagattgtttggactttattgagctttcatgcatatataaatcaccatataaagTGTTCAAAAGTTTTCATGCATACTGTAATGCGGAGGGG
TGTAGAGAAATTGATTCAGGCATTGAATCAAACAAAACTACATGCGGGGGAAGAAAAAAAGACAACACAAGGACTTGGATGTGTACGAAAATTATGGAGGCATCCAAATCCTCAATCTCCCAAGAAAGTTGGTGGCTATCACATGAGACAAGTAACTAAGGTTAGTGTACCGATTCAATTACAAAGAACTAAACAATATC
GAAAACGACGGGTACCATGGCGTTGCTTGAAGGTTCCTAAGATATATTCTTTGAGCAAATATGCAAGATGACTTTGTGAGATTCAATTAAATATATTTGTAATTTGAGTTGTAAATGTTATATTTAAGACTTATTTTAAGGGTTCCACCCTGAACCATTGGTATGTGTCTAGGCATTATGATAGTTAAAATTGAATATAA
AAATATACGATTCTAATTAATTTTCTTCAAATAAGAGATTAAAAGCTAGATTACAATTAAAATCAACAAATGAATGTGTAATGGCACCATTATATAGCAT
Intron 3 GTAATTGCAA ... AACTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.22 | 42.2 | 10.1 | 15 |
| A2 | 34.67 | 45.2 | 14 | 24 |
| A3 | 28.45 | 35.2 | 11 | 14 |
| A4 | 29.94 | 23.4 | 9.4 | 10 |
| A5 | 20 | 12 | 6.4 | 3 |
| A6 | 20.64 | 119.2 | 39.3 | 31 |
| A7 | 20.41 | 156 | 32.1 | 40 |
| A8 | 23.27 | 188 | 46.2 | 57 |
| A9 | 19.37 | 208.1 | 39.1 | 50 |
| A10 | 24.51 | 110.9 | 39.4 | 36 |
>TRINITY_DN109633_c1_g1_i5 from sample A3 / Example spliced isoformATCTATTTATGGCAGTTTTCCTTGACATATTTTCTCTTGCATTTACACAGATACTCGAATACTGTTGATCACAAAGATTGCATCTTTACGAGCAGTGGTTTTAGGTGCACCTATGAGGGATATTTTGAAGAACCTTACTTCCAAAGCATTTGTTACTAGTGGAAATCAAGTTATTTCACTTACACAACACCCAAAGGAGA
ATTTGTTTCTTATTCCCTTGCCAGACAAGGTGATCATCGTGGTTCCAGTGCACTTTAAGGATAGCACTGATGCACAATTCATGGAGGCGAGGCGCAGTTCAGGATTCAATAAAGCACCACCTTGTGTTTGGTCTGCAACACCACCTTTAGAGATGAAAGAAGCACCATTCTATACATTGGGTGCTAATGCAGGATTTGTA
TCTTTTGTGATATTTCCTCATCATGTTGAAGGCAGTAAACTGGACAAGATTGTTTGGACTTTATTGAGCTTTCATGCATATATAAATCACCATATAAAGTGTTCAAAAGTTTTCATGCATACTGTAATGCGGAGGGGTGTAGAGAAATTGATTCAGGCATTGAATCAAACAAAACTACATGCGGGGGAAGAAAAAAAGAC
AACACAAGGACTTGGATGTGTACGAAAATTATGGAGGCATCCAAATCCTCAATCTCCCAAGAAAGTTGGTGGCTATCACATGAGACAAGTAACTAAGCACCGAGTTTGAAATATACAAAGACCAAATAATTTGAGGAAGTAGAATGAACGCTGATCAAATTCAATGGAACTATTTGAAATTCAAGAATTGAGTGCAAGTA
TGGAAACTGATAGTAGAATTGATCAGTGGGAGTCGAGGTCGAGTATGGCGATAACCAAAGGTGCTTGGTCATATATCAACTCTTTAGGAATTTGAGGCTGAGTTGGTGATAGTGGTCAAGCATTGACAATTAATTGACTTGATGTTCCTACATATAAGAGCATTTGGGCTCTAATCTTTAATTTTTTCAATCAGTGTTGA
AGAGCTTTCCCTAAGAGTTGTATGTGTGATGTATTACAATATATTAATACATTTGTTGCGATATTCTATCTAGCTATTTGTATTCGTC
>TRINITY_DN109633_c1_g1_i7 from sample A3 / Example unspliced isoform:GCATTACAAGGTGGCGCCGAACACTCATTCTTGCGTGTGATCTAAGGGAAGCCAGGAGAAGAGCAGGGGTCTTGTGGATCGACGATTCCTCCGAGTAGTTGTGTTGGCAGTAGGCAACGCCAGTATGAGGAAGAAGAAGCAGCAGAGTCTTTTCCAGACGCCTTCGCGGATTCTTGTTGAAATTCTTATGGATCGAATGC
ACAATATAGACAAGGCTGTGGAAGTGGATTACCATTTAGTGGAGTTTGATGATGTCAGGTATCATATTCAGTCTTCAATTTCAGATCCGCAGTACATGGAGATTTCAATTGCAGTTCCATCTCTTTCTCGAGAAACTGTTTTTCCTACTGGGCTTCCGCTTGGTGCAATAGAAGCTGTCAAAGGAGCATATGGTTATGTC
ATGCAGATCATTGATCCTCCGGAAGAAGGCTTTCACCTCACACTAAACCTAGACTTGTCAAAATTTCCATCAAATGAAGATACTCGAATACTGTTGATCACAAAGATTGCATCTTTACGAGCAGTGGTTTTAGGTGCACCTATGAGGGATATTTTGAAGAACCTTACTTCCAAAGCATTTGTTACTAGTGGAAATCAAGT
TATTTCACTTACACAACACCCAAAGGAGAATTTGTTTCTTATTCCCTTGCCAGACAAGGTGATCATCGTGGTTCCAGTGCACTTTAAGGATAGCACTGATGCAgtaattgcaacttcctttttacaggtacactgttattcttgggatatcttggtttttccaaagcatatggtaacttcatgctaataaactgtgcagC
AATTCATGGAGGCGAGGCGCAGTTCAGGATTCAATAAAGCACCACCTTGTGTTTGGTCTGCAACACCACCTTTAGAGATGAAAGAAGCACCATTCTATACATTGGGTGCTAATGCAGGATTTGTATCTTTTGTGATATTTCCTCATCATGTTGAAGGCAGTAAACTGGACAAGATTGTTTGGACTTTATTGAGCTTTCAT
GCATATATAAATCACCATATAAAGTGTTCAAAAGTTTTCATGCATACTGTAATGCGGAGGGGTGTAGAGAAATTGATTCAGGCATTGAATCAAACAAAACTACATGCGGGGGAAGAAAAAAAGACAACACAAGGACTTGGATGTGTACGAAAATTATGGAGGCATCCAAATCCTCAATCTCCCAAGAAAGTTGGTGGCTA
TCACATGAGACAAGTAACTAAGGTTAGTGTACCGATTCAATTACAAAGAACTAAACAATATCGAAAACGACGGGTACCATGGCGTTGCTTGAAGGTTCCTAAGATATATTCTTTGAGCAAATATGCAAGATGACTTTGTGAGATTCAATTAAATATATTTGTAATTTGAGTTGTAAATGTTATATTTAAGACTTATTTTA
AGGGTTCCACCCTGAACCATTGGTATGTGTCTAGGCATTATGATAGTTAAAATTGAATATAAAAATATACGATTCTAATTAATTTTCTTCAAATAAGAGATTAAAAGCTAGATTACAATTAAAATCAACAAATGAATGTGTAATGGCACCATTATATAGCATGT
Intron 4 GTAATTGCAA ... CTTTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 53.92 | 37 | 34 | 45 |
| A2 | 53.63 | 39.7 | 37 | 47 |
| A3 | 56.54 | 30.6 | 36 | 36 |
| A4 | 55.06 | 21.4 | 25 | 24 |
| A5 | 57.82 | 10.9 | 15 | 14 |
| A6 | 53.34 | 105.9 | 119 | 109 |
| A7 | 55.64 | 135.3 | 151 | 160 |
| A8 | 53.72 | 165.7 | 172.5 | 187.5 |
| A9 | 55.95 | 180.3 | 207.6 | 211 |
| A10 | 57.01 | 97.2 | 119 | 122.5 |
>TRINITY_DN111772_c0_g1_i2 from sample A2 / Example spliced isoformTTACAAGGTGGCGCCGAACACTCATTCTTGCGTGTGATCTAAGGGAAGCCAGGAGAAGAGCAGGGGTCTTGTGGATCGACGATTCCTCCGAGTAGTTGTGTTGGCAGTAGGCAACGCCAGTATGAGGAAGAAGAAGCAGCAGAGTCTTTTCCAGACGCCTTCGCGGATTCTTGTTGAAATTCTTATGGATCGAATGCACA
ATATAGACAAGGCTGTGGAAGTGGATTACCATTTAGTGGAGTTTGATGATGTCAGGTATCATATTCAGTCTTCAATTTCAGATCCGCAGTACATGGAGATTTCAATTGCAGTTCCATCTCTTTCTCGAGAAACTGTTTTTCCTACTGGGCTTCCGCTTGGTGCAATAGAAGCTGTCAAAGGAGCATATGGTTATGTCATG
CAGATCATTGATCCTCCGGAAGAAGGCTTTCACCTCACACTAAACCTAGACTTGTCAAAATTTCCATCAAATGAAGATACTCGAATACTGTTGATCACAAAGATTGCATCTTTACGAGCAGTGGTTTTAGGTGCACCTATGAGGGATATTTTGAAGAACCTTACTTCCAAAGAATTTGTTACTAGTGGAAATCAAGTTAT
TTCACTTACACAACACCCAAAGGAGAATTTGTTTCTTATTCCCTTGCCAGACAAGGTGATCATCGTGGTTCCAGTGCACTTTAAGGATAGCACTGATGCACAATTCATGGAGGCGAGGCGCAG
>TRINITY_DN111772_c0_g1_i5 from sample A2 / Example unspliced isoform:TTACAAGGTGGCGCCGAACACTCATTCTTGCGTGTGATCTAAGGGAAGCCAGGAGAAGAGCAGGGGTCTTGTGGATCGACGATTCCTCCGAGTAGTTGTGTTGGCAGTAGGCAACGCCAGTATGAGGAAGAAGAAGCAGCAGAGTCTTTTCCAGACGCCTTCGCGGATTCTTGTTGAAATTCTTATGGATCGAATGCACA
ATATAGACAAGGCTGTGGAAGTGGATTACCATTTAGTGGAGTTTGATGATGTCAGGTATCATATTCAGTCTTCAATTTCAGATCCGCAGTACATGGAGATTTCAATTGCAGTTCCATCTCTTTCTCGAGAAACTGTTTTTCCTACTGGGCTTCCGCTTGGTGCAATAGAAGCTGTCAAAGGAGCATATGGTTATGTCATG
CAGATCATTGATCCTCCGGAAGAAGGCTTTCACCTCACACTAAACCTAGACTTGTCAAAATTTCCATCAAATGAAGATACTCGAATACTGTTGATCACAAAGATTGCATCTTTACGAGCAGTGGTTTTAGGTGCACCTATGAGGGATATTTTGAAGAACCTTACTTCCAAAGAATTTGTTACTAGTGGAAATCAAGTTAT
TTCACTTACACAACACCCAAAGGAGAATTTGTTTCTTATTCCCTTGCCAGACAAGGTGATCATCGTGGTTCCAGTGCACTTTAAGGATAGCACTGATGCAgtaattgcaacttcctttttacagCAATTCATGGAGGCGAGGCGCAGTTCAGGATTCAATAAAGCACCACCTTGTGTTTGGTCTGCAACACCACCTTTAG
AGATGAAAGAAGCACCATTCTATACATTGGGTGCTAATGCAGGATTTGTATCTTTTGTGATATTTCCTCATCATGTTGAAGGCAGTAAACTGGACAAGATTGTTTGGACTTTATTGAGCTTTCATGCATATATAAATCACCATATAAAGTGTTCAAAAGTTTTCATGCATACTGTAATGCGGAGGGGTGTAGAGAAATTG
ATTCAGGCATTGAATCAAACAAAACTACATGCGGGGGAAGAAAAAAAGACAACACAAGGACTTGGATGTGTACGAAAATTATGGAGGCATCCAAATCCTCAATCTCCCAAGAAAGTTGGTGGCTATCACATGAGACAAGTAACTAAGGTTAGTGTACCGATTCAATTACAAAGAACTAAACAATATCGAAAACGACGGGT
ACCATGGCGTTGCTTGAAGGTTCCTAAGATATATTCTTTGAGCAAATATGCAAGATGACTTTGTGAGATTCAATTAAATATATTTGTAATTTGAGTTGTAAATGTTATATTTAAGACTTATTTTAAGGGTTCCACCCTGAACCATTGGTATGTGTCTAGGCATTATGATAGTTAAAATTGAATATAAAAATATATGATTC
TAATTAATTTTCTTCAAATAAGAGATTAAAAGCTAGATTACAATTAAAATCAACAAATGAATGTGTAA
Intron 5 GTAACTATGT ... TATTTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.43 | 48 | 15 | 12 |
| A2 | 12.84 | 29.4 | 5 | 3 |
| A3 | 7.74 | 25.6 | 1 | 3 |
| A4 | 36.42 | 14.2 | 8 | 8 |
| A5 | 0 | 14.4 | 0 | 0 |
| A6 | 0 | 187 | 0 | 0 |
| A7 | 0 | 299.8 | 0 | 0 |
| A8 | 0 | 379 | 0 | 0 |
| A9 | 0.8 | 284 | 1 | 3 |
| A10 | 0 | 227.2 | 0 | 0 |
>TRINITY_DN99585_c0_g2_i5 from sample A4 / Example spliced isoformTAACACCAGCATTACAAGGTGGCGCCGAACACTCATTCTTGCGTGTGATCTAAGGGAAGCCAGGAGAAGAGCAGGGGTCTTGTGGATCGACGATTCCTCCGAGTAGTTGTGTTGGCAGTAGGCAACGCCAGTATGAGGAAGAAGAAGCAGCAGAGTCTTTTCCAGACGCCTTCGCGGATTCTTGTTGAAATTCTTATGGA
TCGAATGCACAATATAGACAAGGCTGTGGAAGTGGATTACCATTTAGTGGAGTTTGATGATGTCAGGTATCATATTCAGTCTTCAATTTCAGATCCGCAGTACATGGAGATTTCAATTGCAGTTCCATCTCTTTCTCGAGAAACTGTTTTTCCTACTGGGCTTCCGCTTGGTGCAATAGAAGCTGTCAAAGGAGCATATG
GTTATGTCATGCAGATCATTGATCCTCCGGAAGAAGGCTTTCACCTCACACTAAACCTAGACTTGTCAAAATTTCCATCAAATGAAGATACTCGAATACTGTTGATCACAAAGATTGCATCTTTACGAGCAGTGGTTTTAGGTGCACCTATGAGGGATATTTTGAAGAACCTTACTTCCAAAGCATTTGTTACTAGTGGA
AATCAAGTTATTTCACTTACACAACACCCAAAGGAGAATTTGTTTCTTATTCCCTTGCCAGACAAGGTGATCATCGTGGTTCCAGTGCACTTTAAGGATAGCACTGATGCAGTAATTGCAACTTCCTTTTTACAGCAATTCATGGAGGCGAGGCGCAGTTCAGGATTCAATAAAGCACCACCTTGTGTTTGGTCTGCAAC
ACCACCTTTAGAGATGAAAGAAGCACCATTCTATACATTGGGTGCTAATGCAGGATTTGTATCTTTTGTGATATTTCCTCATCATGTTGAAGGCAGTAAACTGGACAAGATTGTTTGGACTTTATTGAGCTTTCATGCATATATAAATCACCATATAAAGTGTTCAAAAGTTTTCATGCATACTGTAATGCGGAGGGGTG
TAGAGAAATTGATTCAGGCATTGAATCAAACAAAACTACATGCGGGGGAAGAAAAAAAGACAACACAAGGACTTGGATGTGTACGAAAATTATGGAGGCATCCAAATCCTCAATCTCCCAAGAAAGTTGGTGGCTATCACATGAGACAAGTAACTAAGGTTAGTGTACCGATTCAATTACAAAGAACTAAACAATATCGA
AAACGAC
>TRINITY_DN99585_c0_g2_i4 from sample A4 / Example unspliced isoform:ATTATGTTTAATTTATAGGATAAAGTTTAAAAGGGTCACAAATTCAGCAAGCATTTAGAATAGAACAAATATTTGCATAATAAGTTTTCTCTGCCTCTTCCATTGTTAAACAATTATTTTCCTCAAGTTTACCTTCAAAAGCGACTAGTGGATGATGATGTCAAGGAAGTCATGCAATAAACTGCAACATTCGACTTTAA
AAACCGTTGTGCCTATGTAACACATACAGTAGTCTTCAGGTAGATTTCCTACTAAATGGTGACAAGCATTTCAGTCTTAGAGTAACTCTATGCTCATGACTATTGCAATAGCAAGAATTCATTATATGACAGAGGGATTTCACTTGTTTGCAGTGTTCAAAAGTTTTCATGCATACTGTAATGCGGAGGGGTGTAGAGAA
ATTGATTCAGgtaactatgtcttcttgatatcttgcaaatatatattaaatgtcccgcagattgaaaataatttgtgtatttgacagGCATTGAATCAAACAAAACTACATGCGGGGGAAGAAAAAAAGACAACACAAGGTTTTTCCTACATGCAATCCTTATCATTTCTAGGAGGCCCATAAAATATATTCATTGCTGT
TGATTTTTCTTTGCAATTTGAATGATGGAAAGTAAATTGGTATACTTCTCCGATATTTGAGAATGTCTAGTTGTTGCATGGTAAGAAATAGAGACAGGAAAAATAAAAGTGTGAAGGACATATTGTTGAGTGTTGATAGATTTGCTGACCTGTCCAAGTATTCCAAGGCTTGGAGTCCCCTTGTTAGATAACAAACATTC
ATTTTATTCACAACCTAGTTAGATATATGCACGCATAAACACATGAAATACACAAACAGAGATCTATCCTTATGGCACCTTTTCCCTTTTATCTATAAGAGATTCCAAAATTCAAGGAATGTTCTGATGAGGATCCTATTACTCATGCGATTCTTTGCCTCCGCTTGTGCTAAATATATCACTTACAACATCTTTAAACT
ATTCCCTTT
Intron 6 GTGATCGTCG ... CTTTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 56.52 | 30 | 33 | 45 |
| A2 | 66.07 | 19 | 27 | 47 |
| A3 | 63.36 | 24 | 47 | 36 |
| A4 | 68.42 | 15 | 41 | 24 |
| A5 | 69.23 | 8 | 22 | 14 |
| A6 | 69.94 | 49 | 119 | 109 |
| A7 | 70.79 | 65 | 155 | 160 |
| A8 | 69.69 | 82 | 189 | 188 |
| A9 | 73.67 | 72 | 192 | 211 |
| A10 | 69.58 | 54 | 125 | 122 |
>TRINITY_DN39240_c0_g1_i4 from sample A9 / Example spliced isoformCAGCATTACAAGGTGGCGCCGAACACTCATTCTTGCGTGTGATCTAAGGGAAGCCAGGAAAAGAGCAGGGGTCTTGTGGATCAACGATTCCTCCGAGTAGTTGTGTTGGCAGTAGGCAACGCCAGTATGAGGAAGAAGAAGCAGCAGAGTCTTTTCCAGACGCCTTCGCGGATTCTTGTTGAAATTCTTATGGATCGAAT
GCACAATATAGACAAGGCTGTGGAAGTGGATTACCATTTAGTGGAGTTTGATGATGTCAGGTATCATATTCAGTCTTCAATTTCAGATCCGCAGTACATGGAGATTTCAATTGCAGTTCCATCTCTTTCTCGAGAAACTGTTTTTCCTACTGGGCTTCCGCTTGGTGCAATAGAAGCTGTCAAAGGAGCATATGGTTATG
TCATGCAGATCATTGATCCTCCGGAAGAAGGCTTTCACCTCACACTAAACCTAGACTTGTCAAAATTTCCATCAAATGAAGATACTCGAATACTGTTGATCACAAAGATTGCATCTTTACGAGCAGTGGTTTTAGGTGCACCTATGAGGGATATTTTGAAGAACCTTACTTCCAAAGAATTTGTTACTAGTGGAAATCAA
GTTATTTCACTTACACAACACCCAAAGGAGAATTTGTTTCTTATTCCCTTGCCAGACAAGCAATTCATGGAGGCGAGGCGCAGTTCAGGATTCAATAAAGCACCACCTTGTGTTTGGTCTGCAACACCACCTTTAGAGATGAAAGAAGCACCATTCTATACATTGGGTGCTAATGCAGGATTTGTATCTTTTGTGATATT
TCCTCATCATGTTGAAGGCAGTAAACTGGACAAGATTGTTTGGACTTTATTGAGCTTTCATGCATATATAAATCACCATATAAAGTGTTCAAAAGTTTTCACGCATACTGTAATGCGGAGGGGTGTAGAGAAATTGATTCAGGCATTGAATCAAACAAAACTACATGCGGGGGAAGAAAAAAAGACAACACAAGGACTTG
GATGTGTACGAAAATTATGGAGGCATCCAAATCCTCAATCTCCCAAGAAAGTTGGTGGCTATCACATGAGACAAGTAACTAAGGTTAGTGTACCGATTCAATTACAAAGAACTAAACAATATCGAAAACGACGGGTACCATGGCGTTGCTTGAAGGTTCCTAAGATATATTCTTTGAGCAAATATGCAAGATGACTTTGT
GAGATTCAATTAAATATATTTGTAATTTGAGTTGTAAATGTTATATTTAAGACTTATTTTAAGGGTTCCACCCTGAACCATTGGTATGTGTCTAGGCATTATGATAGTTAAAATTGAATATAAAAATATACGATTCTAATTAATTTTCTTCAAATAAGAGATTAAAAGCTAGATTACAATTAAAATCAACAAATGAATGT
GTAATGGCACCATTATATAGCATGTTTATAAAAATTAAAGTTTTTAATTCAACTCAATAAATCAAATAGTTAATATCCTTGTATTTTGCAAAAAAACATGTAATGTGAAATGTGTGATATACATGCATCTTTCTTGTAAATTGATAAAACTACTTAAATCACG
>TRINITY_DN39240_c0_g1_i8 from sample A9 / Example unspliced isoform:CAGCATTACAAGGTGGCGCCGAACACTCATTCTTGCGTGTGATCTAAGGGAAGCCAGGAAAAGAGCAGGGGTCTTGTGGATCAACGATTCCTCCGAGTAGTTGTGTTGGCAGTAGGCAACGCCAGTATGAGGAAGAAGAAGCAGCAGAGTCTTTTCCAGACGCCTTCGCGGATTCTTGTTGAAATTCTTATGGATCGAAT
GCACAATATAGACAAGGCTGTGGAAGTGGATTACCATTTAGTGGAGTTTGATGATGTCAGGTATCATATTCAGTCTTCAATTTCAGATCCGCAGTACATGGAGATTTCAATTGCAGTTCCATCTCTTTCTCGAGAAACTGTTTTTCCTACTGGGCTTCCGCTTGGTGCAATAGAAGCTGTCAAAGGAGCATATGGTTATG
TCATGCAGATCATTGATCCTCCGGAAGAAGGCTTTCACCTCACACTAAACCTAGACTTGTCAAAATTTCCATCAAATGAAGATACTCGAATACTGTTGATCACAAAGATTGCATCTTTACGAGCAGTGGTTTTAGGTGCACCTATGAGGGATATTTTGAAGAACCTTACTTCCAAAGAATTTGTTACTAGTGGAAATCAA
GTTATTTCACTTACACAACACCCAAAGGAGAATTTGTTTCTTATTCCCTTGCCAGACAAGgtgatcgtcgtggttccagtgcactttaaggatagcactgatgcagtaattgcaacttcctttttacagCAATTCATGGAGGCGAGGCGCAGTTCAGGATTCAATAAAGCACCACCTTGTGTTTGGTCTGCAACACCACC
TTTAGAGATGAAAGAAGCACCATTCTATACATTGGGTGCTAATGCAGGATTTGTATCTTTTGTGATATTTCCTCATCATGTTGAAGGCAGTAAACTGGACAAGATTGTTTGGACTTTATTGAGCTTTCATGCATATATAAATCACCATATAAAGTGTTCAAAAGTTTTCACGCATACTGTAATGCGGAGGGGTGTAGAGA
AATTGATTCAGGCATTGAATCAAACAAAACTACATGCGGGGGAAGAAAAAAAGACAACACAAGGACTTGGATGTGTACGAAAATTATGGAGGCATCCAAATCCTCAATCTCCCAAGAAAGTTGGTGGCTATCACATGAGACAAGTAACTAAGCACCGAGTTTGAAATGTACAAAGACCAAATAATTTGAGGAAGTAGAAT
GAACGCTGGTCAAATTCAATGGAACTATTTGAAATTCAAGAATTGAGTGCAAGTATGGAAACTGATAGTAGAATTGATCGGTGGGAGTCGAGGTCGAGTATGGCGATAACCAAAGGTGCTTGGTCATATATCAACTCTTTAGGAATTTGAGGCTGAGTTGGTGATAGTGGTCAAGCATTGACAATTAATTGACTTGATGT
TCCTACATATAAGAGCATTTGGGCTCTAATCTTTAATTTTTTCAATCAGTGTTGAAGAGCTTTCCCTAAGAGTTGTATGTGTGATGTATTACAATATATTAATACATTTGTTGCGATATTCTATCTAGCTATTTGTATTCGTGC
Intron 7 GTTGAACAAG ... CTTACCTAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.13 | 46 | 39 | 43 |
| A2 | 40.32 | 37 | 31 | 19 |
| A3 | 42.71 | 57 | 42 | 43 |
| A4 | 45.21 | 60 | 49 | 50 |
| A5 | 45.71 | 19 | 18 | 14 |
| A6 | 45.56 | 98 | 76 | 88 |
| A7 | 44.53 | 152 | 110 | 134 |
| A8 | 44.92 | 168 | 135 | 139 |
| A9 | 45.1 | 171 | 143 | 138 |
| A10 | 43.32 | 159 | 118 | 125 |
>TRINITY_DN103445_c0_g2_i8 from sample A5 / Example spliced isoformGTGGCGCCGAACACTCATTCTTGCGTGTGATCTAAGGGAAGCCAGGAGAAGAGCAGGGGTCTTGTGGATCGACGATTCCTCCGAGTAGTTGTGTTGGCAGTAGGCAACGCCAGTATGAGGAAGAAGAAGCAGCAGAGTCTTTTCCAGACGCCTTCGCGGATTCTTGTTGAAATTCTTATGGATCGAATGCACAATATAGA
CAAGGCTGTGGAAGTGGATTACCATTTAGTGGAGTTTGATGATGTCAGGTATCATATTCAGTCTTCAATTTCAGATCCGCAGTACATGGAGATTTCAATTGCAGTTCCATCTCTTTCTCGAGAAACTGTTTTTCCTACTGGGCTTCCGCTTGGTGCAATAGAAGCTGTCAAAGGAGCATATGGTTATGTCATGCAGATCA
TTGATCCTCCGGAAGAAGGCTTTCACCTCACACTAAACCTAGACTTGTCAAAATTTCCATCAAATGAAGATACTCGAATACTGTTGATCACAAAGATTGCATCTTTACGAGCAGTGGTTTTAGGTGCACCTATGAGGGATATTTTGAAGAACCTTACTTCCAAAGCATTTGTTACTAGTGGAAATCAAGTTATTTCACTT
ACACAACACCCAAAGGAGAATTTGTTTCTTATTCCCTTGGTAAGTTTGCAATATTTGAACTAGAATATTTTTGTTTAACATGTTTCTTTTCTTTTTTGTTCTTTTTATTTGGCC
>TRINITY_DN103445_c0_g2_i9 from sample A5 / Example unspliced isoform:GTGGCGCCGAACACTCATTCTTGCGTGTGATCTAAGGGAAGCCAGGAGAAGAGCAGGGGTCTTGTGGATCGACGATTCCTCCGAGTAGTTGTGTTGGCAGTAGGCAACGCCAGTATGAGGAAGAAGAAGCAGCAGAGTCTTTTCCAGACGCCTTCGCGGATTCTTGTTGAAATTCTTATGGATCGAATGCACAATATAGA
CAAGGCTGTGGAAGTGGATTACCATTTAGTGGAGTTTGATGATGTCAGGTATCATATTCAGTCTTCAATTTCAGATCCGCAGTACATGGAGATTTCAATTGCAGTTCCATCTCTTTCTCGAGAAACTGTTTTTCCTACTGGGCTTCCGCTTGGTGCAATAGAAGCTGTCAAAGGAGCATATGGTTATGTCATGCAGATCA
TTGATCCTCCGGAAGAAGGCTTTCACCTCACACTAAACCTAGACTTGTCAAAATTTCCATCAAATGAAGgttgaacaagtctcttacctaagATACTCGAATACTGTTGATCACAAAGATTGCATCTTTACGAGCAGTGGTTTTAGGTGCACCTATGAGGGATATTTTGAAGAACCTTACTTCCAAAGCATTTGTTACTA
GTGGAAATCAAGTTATTTCACTTACACAACACCCAAAGGAGAATTTGTTTCTTATTCCCTTGCCAGACAAGGTGATCGTCGTGGTTCCAGTGCACTTTAAGGATAGCACTGATGCAGTAATTGCAACTTCCTTTTTACAGCAATTCATGGAGGCGAGGCGCAGTTCAGGATTCAATAAAGCACCACCTTGTGTTTGGTCT
GCAACACCACCTTTAGAGATGAAAGAAGCACCATTCTATACATTGGGTGCTAATGCAGGATTTGTATCTTTTGTGATATTTCCTCATCATGTTGAAGGCAGTAAACTGGACAAGATTGTTTGGACTTTATTGAGCTTTCATGCATATATAAATCACCATATAAAGTGTTCAAAAGTTTTCATGCATACTGTAATGCGGAG
GGGTGTAGAGAAATTGATTCAGGCATTGAATCAAACAAAACTACATGCGGGGGAAGAAAAAAAGACAACACAAGGACTTGGATGTGTACGAAAATTATGGAGGCATCCAAATCCTCAATCTCCCAAGAAAGTTGGTGGCTATCACATGAGACAAGTAACTAAGGTTAGTGTACCGATTCAATTACAAAGAACTAAACAAT
ATCGAAA
Intron 8 GTATTTTCCA ... ATTTTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.24 | 42 | 7.7 | 15.7 |
| A2 | 25 | 36 | 7.6 | 12 |
| A3 | 28.57 | 25 | 3.9 | 10 |
| A4 | 30.56 | 25 | 4.6 | 11 |
| A5 | 28.57 | 10 | 2.3 | 4 |
| A6 | 22.47 | 143 | 27.8 | 41.5 |
| A7 | 20.34 | 141 | 33.7 | 36 |
| A8 | 23.02 | 207.3 | 41.9 | 62 |
| A9 | 19.82 | 174 | 43.1 | 43 |
| A10 | 31.4 | 138 | 26.9 | 63.2 |
>TRINITY_DN41790_c0_g1_i1 from sample A7 / Example spliced isoformTAACACCAGCATTACAAGGTGGCGCCGAACACTCATTCTTGCGTGTGATCTAAGGGAAGCCAGGAAAAGAGCAGGGGTCTTGTGGATCAACGATTCCTCCGAGTAGTTGTGTTGGCAGTAGGCAACGCCAGTATGAGGAAGAAGAAGCAGCAGAGTCTTTTCCAGACGCCTTCGCGGATTCTTGTTGAAATTCTTATGGA
TCGAATGCACAATATAGACAAGGCTGTGGAAGTGGATTACCATTTAGTGGAGTTTGATGATGTCAGGTATCATATTCAGTCTTCAATTTCAGATCCGCAGTACATGGAGATTTCAATTGCAGTTCCATCTCTTTCTCGAGAAACTGTTTTTCCTACTGGGCTTCCGCTTGGTGCAATAGAAGCTGTCAAAGGAGCATATG
GTTATGTCATGCAGATCATTGATCCTCCGGAAGAAGGCTTTCACCTCACACTAAACCTAGACTTGTCAAAATTTCCATCAAATGAAGATACTCGAATACTGTTGATCACAAAGATTGCATCTTTACGAGCAGTGGTTTTAGGTGCACCTATGAGGGATATTTTGAAGAACCTTACTTCCAAAGCATTTGTTACTAGTGGA
AATCAAGTTATTTCACTTACACAACACCCAAAGGAGAATTTGTTTCTTATTCCCTTGCCAGACAAGGTGATCATCGTGGTTCCAGTGCACTTTAAGGATAGCACTGATGCACAATTCATGGAGGCGAGGCGCAGTTCAGGATTCAATAAAGCACCACCTTGTGTTTGGTCTGCAACACCACCTTTAGAGATGAAAGAAGC
ACCATTCTATACATTGGGTGCTAATGCAGGATTTGTATCTTTTGTGATATTTCCTCATCATGTTGAAGGCAGTAAACTGGACAAGATTGTTTGGACTTTATTGAGCTTTCATGCATATATAAATCACCATATAAAGTGTTCAAAAGTTTTCATGCATACTGTAATGCGGAGGGGTGTAGAGAAATTGATTCAGGCATTGA
ATCAAACAAAACTACATGCGGGGGAAGAAAAAAAGACAACACAAGGACTTGGATGTGTACGAAAATTATGGAGGCATCCAAATCCTCAATCTCCCAAGAAAGTTGGTGGCTATCACATGAGACAAGTAACTAAGGTTAGTGTACCGATTCAATTACAAAGAACTAAACAATATCGAAAACGACGGGTACCATGGCGTTGC
TTGAAGGTTCCTAAGATATATTCTTTGAGCAAATATGCAAGATGACTTTGTGAGATTCAATTAAATATATTTGTAATTTGAGTTGTAAATGTTATATTTAAGACTTATTTTAAGGGTTCCACCCTGAACCATTGGTATGTGTCTAGGCATTATGATAGTTAAAATTGAATATAAAAATATATGATTCTAATTAATTTTCT
TCAAATAAGAGATTAAAAGCTAGATTACAATTAAAATCAACAAATGAATGTGTAATGGCACCATTATATAGCATG
>TRINITY_DN41790_c0_g1_i6 from sample A7 / Example unspliced isoform:TAACACCAGCATTACAAGGTGGCGCCGAACACTCATTCTTGCGTGTGATCTAAGGGAAGCCAGGAAAAGAGCAGGGGTCTTGTGGATCAACGATTCCTCCGAGTAGTTGTGTTGGCAGTAGGCAACGCCAGTATGAGGAAGAAGAAGCAGCAGAGTCTTTTCCAGACGCCTTCGCGGATTCTTGTTGAAATTCTTATGGA
TCGAATGCACAATATAGACAAGGCTGTGGAAGTGGATTACCATTTAGTGGAGTTTGATGATGTCAGGTATCATATTCAGTCTTCAATTTCAGATCCGCAGTACATGGAGATTTCAATTGCAGTTCCATCTCTTTCTCGAGAAACTGTTTTTCCTACTGGGCTTCCGCTTGGTGCAATAGAAGCTGTCAAAGGAGCATATG
GTTATGTCATGCAGATCATTGATCCTCCGGAAGAAGGCTTTCACCTCACACTAAACCTAGACTTGTCAAAATTTCCATCAAATGAAGATACTCGAATACTGTTGATCACAAAGATTGCATCTTTACGAGCAGTGGTTTTAGGTGCACCTATGAGGGATATTTTGAAGAACCTTACTTCCAAAGCATTTGTTACTAGTGGA
AATCAAGTTATTTCACTTACACAACACCCAAAGGAGAATTTGTTTCTTATTCCCTTGCCAGACAAGGTGATCATCGTGGTTCCAGTGCACTTTAAGGATAGCACTGATGCAGTAATTGCAACTTCCTTTTTACAGCAATTCATGGAGGCGAGGCGCAGTTCAGGATTCAATAAAGCACCACCTTGTGTTTGGTCTGCAAC
ACCACCTTTAGAGATGAAAGAAGCACCATTCTATACATTGGGTGCTAATGCAGGATTTGTATCTTTTGgtattttccaagcattctcctcattgtttcttttgcacagcatttcagtcgatgcaaatcctaagatgactccttatatgtttgaagattgtttcttgatcaatatgctatgttgtaggaggcatcattatg
aacaagttatgtaggcaatgcaataagtttggcaatttgaaattaagtaatacccgatctcaaaattaatgcagcttaacacatctgtcatttgttaaatttttgtagTGATATTTCCTCATCATGTTGAAGGCAGTAAACTGGACAAGATTGTTTGGACTTTATTGAGCTTTCATGCATATATAAATCACCATATAAAG
TGTTCAAAAGTTTTCATGCATACTGTAATGCGGAGGGGTGTAGAGAAATTGATTCAGGCATTGAATCAAACAAAACTACATGCGGGGGAAGAAAAAAAGACAACACAAGGACTTGGATGTGTACGAAAATTATGGAGGCATCCAAATCCTCAATCTCCCAAGAAAGTTGGTGGCTATCACATGAGACAAGTAACTAAGGT
TAGTGTACCGATTCAATTACAAAGAACTAAACAATATCGAAAACGACGGGTACCATGGCGTTGCTTGAAGGTTCCTAAGATATATTCTTTGAGCAAATATGCAAGATGACTTTGTGAGATTCAATTAAATATATTTGTAATTTGAGTTGTAAATGTTATATTTAAGACTTATTTTAAGGGTTCCACCCTGAACCATTGGT
ATGTGTCTAGGCATTATGATAGTTAAAATTGAATATAAAAATATATGATTCTAATTAATTTTCTTCAAATAAGAGATTAAAAGCTAGATTACAATTAAAATCAACAAATGAATGTGTAATGGCACCATTATATAGCATG
Intron 9 GTGATCGTCG ... AACTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40.59 | 30 | 26 | 15 |
| A2 | 49.33 | 19 | 13 | 24 |
| A3 | 47.25 | 24 | 29 | 14 |
| A4 | 53.12 | 15 | 24 | 10 |
| A5 | 55.56 | 8 | 17 | 3 |
| A6 | 53.77 | 49 | 83 | 31 |
| A7 | 49.22 | 65 | 86 | 40 |
| A8 | 52.46 | 82 | 124 | 57 |
| A9 | 49.83 | 72 | 93 | 50 |
| A10 | 51.57 | 54 | 79 | 36 |
>TRINITY_DN39240_c0_g1_i4 from sample A9 / Example spliced isoformCAGCATTACAAGGTGGCGCCGAACACTCATTCTTGCGTGTGATCTAAGGGAAGCCAGGAAAAGAGCAGGGGTCTTGTGGATCAACGATTCCTCCGAGTAGTTGTGTTGGCAGTAGGCAACGCCAGTATGAGGAAGAAGAAGCAGCAGAGTCTTTTCCAGACGCCTTCGCGGATTCTTGTTGAAATTCTTATGGATCGAAT
GCACAATATAGACAAGGCTGTGGAAGTGGATTACCATTTAGTGGAGTTTGATGATGTCAGGTATCATATTCAGTCTTCAATTTCAGATCCGCAGTACATGGAGATTTCAATTGCAGTTCCATCTCTTTCTCGAGAAACTGTTTTTCCTACTGGGCTTCCGCTTGGTGCAATAGAAGCTGTCAAAGGAGCATATGGTTATG
TCATGCAGATCATTGATCCTCCGGAAGAAGGCTTTCACCTCACACTAAACCTAGACTTGTCAAAATTTCCATCAAATGAAGATACTCGAATACTGTTGATCACAAAGATTGCATCTTTACGAGCAGTGGTTTTAGGTGCACCTATGAGGGATATTTTGAAGAACCTTACTTCCAAAGAATTTGTTACTAGTGGAAATCAA
GTTATTTCACTTACACAACACCCAAAGGAGAATTTGTTTCTTATTCCCTTGCCAGACAAGCAATTCATGGAGGCGAGGCGCAGTTCAGGATTCAATAAAGCACCACCTTGTGTTTGGTCTGCAACACCACCTTTAGAGATGAAAGAAGCACCATTCTATACATTGGGTGCTAATGCAGGATTTGTATCTTTTGTGATATT
TCCTCATCATGTTGAAGGCAGTAAACTGGACAAGATTGTTTGGACTTTATTGAGCTTTCATGCATATATAAATCACCATATAAAGTGTTCAAAAGTTTTCACGCATACTGTAATGCGGAGGGGTGTAGAGAAATTGATTCAGGCATTGAATCAAACAAAACTACATGCGGGGGAAGAAAAAAAGACAACACAAGGACTTG
GATGTGTACGAAAATTATGGAGGCATCCAAATCCTCAATCTCCCAAGAAAGTTGGTGGCTATCACATGAGACAAGTAACTAAGGTTAGTGTACCGATTCAATTACAAAGAACTAAACAATATCGAAAACGACGGGTACCATGGCGTTGCTTGAAGGTTCCTAAGATATATTCTTTGAGCAAATATGCAAGATGACTTTGT
GAGATTCAATTAAATATATTTGTAATTTGAGTTGTAAATGTTATATTTAAGACTTATTTTAAGGGTTCCACCCTGAACCATTGGTATGTGTCTAGGCATTATGATAGTTAAAATTGAATATAAAAATATACGATTCTAATTAATTTTCTTCAAATAAGAGATTAAAAGCTAGATTACAATTAAAATCAACAAATGAATGT
GTAATGGCACCATTATATAGCATGTTTATAAAAATTAAAGTTTTTAATTCAACTCAATAAATCAAATAGTTAATATCCTTGTATTTTGCAAAAAAACATGTAATGTGAAATGTGTGATATACATGCATCTTTCTTGTAAATTGATAAAACTACTTAAATCACG
>TRINITY_DN39240_c0_g1_i5 from sample A9 / Example unspliced isoform:CAGCATTACAAGGTGGCGCCGAACACTCATTCTTGCGTGTGATCTAAGGGAAGCCAGGAAAAGAGCAGGGGTCTTGTGGATCAACGATTCCTCCGAGTAGTTGTGTTGGCAGTAGGCAACGCCAGTATGAGGAAGAAGAAGCAGCAGAGTCTTTTCCAGACGCCTTCGCGGATTCTTGTTGAAATTCTTATGGATCGAAT
GCACAATATAGACAAGGCTGTGGAAGTGGATTACCATTTAGTGGAGTTTGATGATGTCAGGTATCATATTCAGTCTTCAATTTCAGATCCGCAGTACATGGAGATTTCAATTGCAGTTCCATCTCTTTCTCGAGAAACTGTTTTTCCTACTGGGCTTCCGCTTGGTGCAATAGAAGCTGTCAAAGGAGCATATGGTTATG
TCATGCAGATCATTGATCCTCCGGAAGAAGGCTTTCACCTCACACTAAACCTAGACTTGTCAAAATTTCCATCAAATGAAGATACTCGAATACTGTTGATCACAAAGATTGCATCTTTACGAGCAGTGGTTTTAGGTGCACCTATGAGGGATATTTTGAAGAACCTTACTTCCAAAGAATTTGTTACTAGTGGAAATCAA
GTTATTTCACTTACACAACACCCAAAGGAGAATTTGTTTCTTATTCCCTTGCCAGACAAGgtgatcgtcgtggttccagtgcactttaaggatagcactgatgcagtaattgcaacttcctttttacaggtacactgttattcttgggatatcttggtttttccaaagcatatggtaacttcatgctaataaactgtgca
gCAATTCATGGAGGCGAGGCGCAGTTCAGGATTCAATAAAGCACCACCTTGTGTTTGGTCTGCAACACCACCTTTAGAGATGAAAGAAGCACCATTCTATACATTGGGTGCTAATGCAGGATTTGTATCTTTTGGTATTTTCCAAGCATTCTCCTCATTGTTTCTTTTGCACAGCATTTCAGTCGATGCAAATCCTAAGA
TGACTCCTTATATGTTTGAAGATTGTTTCTTGATCAATATGCTATGTTGTAGGAGGCATCATTATGAACAAGTTATGTAGGCAATGCAATAAGTTTGGCAATTTGAAATTAAGTAATACCCGATCTCAAAATTAATGCAGCTTAACACATCTGTCATTTGTTAAATTTTTGTAGTGATATTTCCTCATCATGTTGAAGGC
AGTAAACTGGACAAGATTGTTTGGACTTTATTGAGCTTTCATGCATATATAAATCACCATATAAAGTGTTCAAAAGTTTTCACGCATACTGTAATGCGGAGGGGTGTAGAGAAATTGATTCAGGCATTGAATCAAACAAAACTACATGCGGGGGAAGAAAAAAAGACAACACAAGCACCGAGTTTGAAATGTACAAAGAC
CAAATAATTTGAGGAAGTAGAATGAACGCTGGTCAAATTCAATGGAACTATTTGAAATTCAAGAATTGAGTGCAAGTATGGAAACTGATAGTAGAATTGATCGGTGGGAGTCGAGGTCGAGTATGGCGATAACCAAAGGTGCTTGGTCATATATCAACTCTTTAGGAATTTGAGGCTGAGTTGGTGATAGTGGTCAAGCA
TTGACAATTAATTGACTTGATGTTCCTACATATAAGAGCATTTGGGCTCTAATCTTTAATTTTTTCAATCAGTGTTGAAGAGCTTTCCCTAAGAGTTGTATGTGTGATGTATTACAATATATTAATACATTTGTTGCGATATTCTATCTAGCTATTTGTATTCGTGC