NA ----> NA

Intron 1 GTATGGGGTT ... TCAAATTTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	80.3	26	115	97
A2	80	18	77	67
A3	80.95	22	88	99
A4	74.31	28	69	93
A5	79.59	10	38	40
A6	60	3	6	3
A7	63.64	4	8	6
A8	100	0	18	12
A9	68.42	3	5	8
A10	100	0	6	5

>TRINITY_DN110002_c5_g2_i12 from sample A4 / Example spliced isoform

GGTGAACTTAAGATTAGGGCGGATGTCCCATTGGAGCTTATGCAAATTCCACAAATATAGTGAGAAAAGGTTCAATGGGTGGGGTAATTAAGGAAGGTATTAACAGCCCATATTGTGAGTTTAGGAATGATGTAGATTGCACATTGCAATGGGTGAAGGGGAAGGCCAAGGAAGAGGACGTATACATGGTTCATGTGCAA
AGGTTGAGGTCGAGGGTGAATTCTACATTTGTCAATAACCCATTTTGTGGAGGCAATGTGTGCAAGTAAAGGAAGGTGACTTTTGATGAAAATGTTGAAATGTTTAATATGGGTTACTCAGTAAACATGGGCCATCAGGTATGCATGGTTTCAATTGTGTTTGTTTAAATT

>TRINITY_DN110002_c5_g2_i16 from sample A4 / Example unspliced isoform:

GGTGAACTTAAGATTAGGGCGGATGTCCCATTGGAGCTTATGCAAATTCCACAAATATAGTGAGAAAAGGTTCAATGGGTGGGGTAATTAAGGAAGGTATTAACAGCCCATATTGTGAGTTTAGGAATGATGTAGATTGCACATTGCAATGGGTGAAGGGGAAGGCCAAGGAAGAGGACGTATACATGGTTCATGTGCAA
AGGTTGAGGTCGAGGGTGAATTCTACATTTGTCAATAACCCATTTTGTGGgtatggggttgatgcatatttattgatgcaatgggcaatgagaaggctaaggagtatgagatatgcattgtttatgctaatttaacataagtcattttttgatacatcattatatcatgtgtttgttcaaatttagAGGCAATGTGTGCA
AGTAAAGGAAGGTGACTTTTGATGAAAATGTTGAAATGTTTAATATGGGTTACTCAGTAAACATGGGCCATCAGGTATGCATGGTTTCAATTGTGTTTGTTTAAATT

Intron 2 GTATGCATGG ... CATATTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	82.35	27	149	103
A2	76.19	25	70	90
A3	68.37	34	77	70
A4	79	23	95	78
A5	60.44	18	32	23
A6	69.23	2	5	4
A7	54.84	7	7	10
A8	77.78	4	16	12
A9	57.14	3	3	5
A10	100	0	1	6

>TRINITY_DN42851_c4_g2_i3 from sample A9 / Example spliced isoform

AAAAGGTTCAATGGGTGGGGTAATTAAGGAAGGTATTAACAACCCATATTGTGAGTTTAGGAATGATGTAGATTGCACATTGCAATGGGTGAAGGGGAAGGCCAAGGAAGAGGAGGTTCAAAGGTTGAGATCGAGGGTGAATTCTACATTTGTCGATAACCCATTTTGTGGAGGCAATGTAGTGCAAGTAAAGGAAGGTG
GATGATTGTTGATGAAAATGTTGAAATGTTTAATATGGGTTACTCAGTAAACATGGGCCATCAGGTTTAGGGATGTTGCATCTTTACTGGTACAATGGGTGAGGAGAAGGCTAAGGAGTAGGAGGTTAAAGGTGGATGATTGTTTATAAACCATGAAAAGGTCGAAGAGAGAGATACATGCTAGCTGGTTGTCCTAGGCT
CGCCATGGAAGCTTTTAGAGGTTGT

>TRINITY_DN42851_c4_g2_i1 from sample A9 / Example unspliced isoform:

AAAAGGTTCAATGGGTGGGGTAATTAAGGAAGGTATTAACAACCCATATTGTGAGTTTAGGAATGATGTAGATTGCACATTGCAATGGGTGAAGGGGAAGGCCAAGGAAGAGGAGGTTCAAAGGTTGAGATCGAGGGTGAATTCTACATTTGTCGATAACCCATTTTGTGGAGGCAATGTAGTGCAAGTAAAGGAAGGTG
GATGATTGTTGATGAAAATGTTGAAATGTTTAATATGGGTTACTCAGTAAACATGGGCCATCAGgtatgcatggtttcaattgtgtttgtttaaattagtcattatattatttgtcatttctttatgtaatgagtgtaaaggggtaaatgaattttgaggatctttaatggcactgcagaaatatccttgtgtgcatttg
ctaaggtagaggcaaatagcgagttatacatttgttgatatcaactcatattgcagGTTTAGGGATGTTGCATCTTTACTGGTACAATGGGTGAGGAGAAGGCTAAGGAGTAGGAGGTATGCATTGTTCTGTGCTGGTTGAACTTAACTCATTTTTTTTTACATCATTATATCATGTGTTTGCTTAAATTTAGAGGCACT
GTGAAGGTAAAGGAAGGTGGATGGTTGCTGATGAAACAACTGAAATGTCTTTGTGAGAGAGATATGGG