NA ----> NA
Intron 1 GTCTTGCAGG ... GTTTGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 4 | 8 | 0 |
| A2 | 100 | 0 | 0 | 1 |
| A3 | 71.43 | 2 | 7 | 3 |
| A4 | 45.45 | 3 | 3 | 2 |
| A5 | 33.33 | 3 | 2 | 1 |
| A6 | 78.57 | 9 | 36 | 30 |
| A7 | 71.43 | 9 | 22 | 23 |
| A8 | 77.05 | 7 | 26 | 21 |
| A9 | 71.13 | 14 | 35 | 34 |
| A10 | 85.37 | 3 | 20 | 15 |
>TRINITY_DN111411_c1_g1_i3 from sample A4 / Example spliced isoformTAATTATAATGATATCTATACAATGTAAGATTGTTATTTGAAGGTGTCAGTTTCAATCAAAGTATACCCCTTCTGTGTATATTCGTATAACTCAGTGGAGGAGATGAACTCAGGCCTCCTCTAAAAACAGAACAAATATTTGTACCGTTTTCCTGAGAGAAAAAGAAGAGATAAGGCATGAACACGGCGATGACGAGCTT
TAGCAATGCCATTCTTGCAATATCATGCCCTCGGAGAATACAGGTTCCCATGAACCCAAGTGCAAGGGAAACATGTTGCAATAAAGTGACTTCAAGGTCGATTCCCAGATTGTATTACAACCATCAAAGCACTAGAATTAAAGGAGTTTATGGGAAAAAGGGGCTAGCTCTTGGAAAGCGTGCGGTGGCAGAAGCTTTGC
TTGGTAGGAAGACCACAAAGAGAGAAACAGTGATACCTGATCCCGATTATCGAATACCAGTCATTCTATCAGACTACAAGAGTAAGATTCGTCTTCGATGACGAGACCCTGGAGGTAAGGGTGGGAGATGAGCTTGAAGAGTCTGGTCAAAATGCATTTGTTGGGGGCAAAAACAGATGGAAGTTCTCTACCTTTGTAAA
TTGGGAGTTTTGGTGGCCAAACTTCCCAATTTTGGTGTATTTCAAGGAGACCCAGACAAAGCCAGAAGGCCAAGTGCACTTTTTCCCAGTTATTTTTAATGGAAAGCAGCTCTATGATATAATGGTTGAACGGGCTGGACCATCTCAAAATAGTGGACCAAAATAGTCCCCCAC
>TRINITY_DN111411_c1_g1_i2 from sample A4 / Example unspliced isoform:TAATTATAATGATATCTATACAATGTAAGATTGTTATTTGAAGGTGTCAGTTTCAATCAAAGTATACCCCTTCTGTGTATATTCGTATAACTCAGTGGAGGAGATGAACTCAGGCCTCCTCTAAAAACAGAACAAATATTTGTACCGTTTTCCTGAGAGAAAAAGAAGAGATAAGGCATGAACACGGCGATGACGAGCTT
TAGCAATGCCATTCTTGCAATATCATGCCCTCGGAGAATACAGGTTCCCATGAACCCAAGTGCAAGGGAAACATGTTGCAATAAAGTGACTTCAAGGTCGATTCCCAGATTGTATTACAACCATCAAAGCACTAGAATTAAAGGAGTTTATGGGAAAAAGGGGCTAGCTCTTGGAAAGCGTGCGGTGGCAGAAGCTTTGC
TTGGTAGGAAGACCACAAAGAGAGAAACAGTGATACCTGATCCCGATTATCGAATACCAGTCATTCTATCAGgtcttgcaggtgcattaatctacaaagataatctattacttgctgcaccaattggtcttcttggtttgcttttgtttgttcagACTACAAGAGTAAGATTCGTCTTCGATGACGAGACCCTGGAGGTA
AGGGTGGGAGATGAGCTTGAAGAGTCTGGTCAAAATGCATTTGTTGGGGGCAAAAACAGATGGAAGTTCTCTACCTTTGTAAATTGGGAGTTTTGGTGGCCAAACTTCCCAATTTTGGTGTATTTCAAGGAGACCCAGACAAAGCCAGAAGGCCAAGTGCACTTTTTCCCAGTTATTTTTAATGGAAAGCAGCTCTATGA
TATAATGGTTGAACGGGCTGGACCATCTCAAAATAGTGGACCAAAATAGTCCCCCAC
Intron 2 GTACTTTATA ... TGGATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 1.7 | 3 |
| A2 | 89.56 | 1 | 8.7 | 0 |
| A3 | 100 | 0 | 1 | 2 |
| A4 | 100 | 0 | 3.3 | 0 |
| A5 | 100 | 0 | 2.3 | 2 |
| A6 | 93.18 | 3 | 42 | 4 |
| A7 | 100 | 0 | 15 | 0 |
| A8 | 100 | 0 | 18 | 2 |
| A9 | 94.44 | 1 | 19 | 0 |
| A10 | 100 | 0 | 13.7 | 0 |
>TRINITY_DN40955_c0_g1_i2 from sample A6 / Example spliced isoformTGTTATTTGAAGGTGTCAGTTTCAATCAAAGTATACCCCTTCTGTGTATATTCGTATAACTCAGTGGAGGAGATGAACTCAGGCCTCCTCTAAAAACAGAACAAATATTTGTACCGTTTTCCTGAGAGAAAAAGAAGAGATAAGGCATGAACACGGCGATGACGAGCTTTAGCAATGCCATTCTTGCAATATCATGCCCT
CGGAGAATACAGGTTCCCATGAACCCAAGTGCAAGGGAAACATGTTGCAATAAAGTGACTTCAAGGTCGATTCCCAGATTGTATTACAACCATCAAAGCACTAGAATTAAAGGAGTTTATGGGAAAAAGGGGCTAGCTCTTGGAAAGCGTGCGGTGGCAGAAGCTTTGCTTGGTAGGAAGACCACAAAGAGAGAAACAGT
GATACCTGATCCCGATTATCGAATACCAGTCATTCTATCAGGTCTTGCAGGTGCATTAATCTACAAAGATAATCTATTACTTGCTGCACCAATTGGTCTTCTTGGTTTGCTTTTGTTTGTTCAGACTACAAGAGTAAGATTCGTCTTCGATGACGAGACCCTGGAGGTAAGGGTGGGAGATGAGCTTGAAGAGTCTGGTC
AAAATGCATTTGTTGGGGGTAAAAACAGATGGAAGTTCTCTACCTTTGTAAATTGGGAGTTTTGGTGGCCAAACTTCCCAATTTTGGTGTATTTCAAGGAGACCCAGACAAAGCCAGAAGGCCAAGTGCACTTTTTCCCAGTTATTTTTGTCTTTGCATGCAGACAGATGGATTGTTGATATCTGGAGCTTGGAAAGGAC
ACAAGGTTTCAAGCTTATTTTCTATGCAGTATCTTTGGATCTGAATAGAAATTTCAAACTACAACACTCACAAGCTCTTCATTTTGAATAGGCTTATGATGAGTAAAATAAGTCTTTTCTTTTGTTTCGTATCATAATAAATGAAACCAAGAGAAACTTCTATGATGTGCTACAAAACTGTTTTCTGCCGGG
>TRINITY_DN40955_c0_g1_i7 from sample A6 / Example unspliced isoform:TGTTATTTGAAGGTGTCAGTTTCAATCAAAGTATACCCCTTCTGTGTATATTCGTATAACTCAGTGGAGGAGATGAACTCAGGCCTCCTCTAAAAACAGAACAAATATTTGTACCGTTTTCCTGAGAGAAAAAGAAGAGATAAGGCATGAACACGGCGATGACGAGCTTTAGCAATGCCATTCTTGCAATATCATGCCCT
CGGAGAATACAGGTTCCCATGAACCCAAGTGCAAGGGAAACATGTTGCAATAAAGTGACTTCAAGGTCGATTCCCAGATTGTATTACAACCATCAAAGCACTAGAATTAAAGGAGTTTATGGGAAAAAGGGGCTAGCTCTTGGAAAGCGTGCGGTGGCAGAAGCTTTGCTTGGTAGGAAGACCACAAAGAGAGAAACAGT
GATACCTGATCCCGATTATCGAATACCAGTCATTCTATCAGGTCTTGCAGGTGCATTAATCTACAAAGATAATCTATTACTTGCTGCACCAATTGGTCTTCTTGGTTTGCTTTTGTTTGTTCAGACTACAAGAGTAAGATTCGTCTTCGATGACGAGACCCTGGAGGTAAGGGTGGGAGATGAGCTTGAAGAGTCTGGTC
AAAATGCATTTGTTGGGGGTAAAAACAGATGGAAGTTCTCTACCTTTGTAAATTGGGAGTTTTGGTGGCCAAACTTCCCAATTTTGGTGTATTTCAAGGAGACCCAGACAAAGCCAGAAGGCCAAGTGCACTTTTTCCCAGTTATTTTTAATGGAAAGCAGCTCTATGATATAATGGTTGAACGGGCTGGACCATCTCAA
AATAGTGGACCAAAATAGTCCCCCTTATAGATGTTCTTGGAACTTGTCAAGGAGGATTTTAGATTCCTATCAGGGAACTTACAAGTAGCAGGAAGTCACAAGGTCTTGATACAAACAGGTATATGGGCTAAATTCCACGTTTACAAATTATGCAGGTCTTTGCATGCAGACAGATGGATTGTTGATATCTGGAGCTTGGA
AAGGACACAAGGTTTCAAGgtactttataataatgttctgtgaagatagaacaatggtagaattgccctagaatatagaatagcttacctctggctctagctattgcagacaaaagaattgttgatacctggaaattggaaaggaacagaaggtttcaaagtacttcagaattatgttaacaatgaagattaaacaatgg
tagaattgccctagaatatagagtgagctttaagctcatatctggctctagctatctcgttctgcatattgcaaactaatacctaaagagaatacggtagtatattatttaagatggtaggttattacttattagttttcatggtgattattttatttgtactgatgaatattttatttgtttgtcatattctgaacgtg
ttctattgctttcgaccaaaatggattgcagCTTATTTTCTATGCAGTATCTTTGGATCTGAATAGAAATTTCAAACTACAACACTCACAAGCTCTTCATTTTGAATAGGCTTATGATGAGTAAAATAAGTCTTTTCTTTTGTTTCGTATCATAATAAATGAAACCAAGAGAAACTTCTATGATGTGCTACAAAACTGTT
TTCTGCCGGG
Intron 3 GTGAGCTTTA ... TTTTGAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.43 | 2 | 5 | 1 |
| A2 | 57.14 | 6 | 8 | 0 |
| A3 | 90.91 | 1 | 10 | 0 |
| A4 | 40 | 3 | 2 | 0 |
| A5 | 57.14 | 3 | 4 | 0 |
| A6 | 62.04 | 41 | 67 | 0 |
| A7 | 67.86 | 18 | 38 | 0 |
| A8 | 62.92 | 33 | 56 | 1 |
| A9 | 62.9 | 23 | 39 | 0 |
| A10 | 44.83 | 16 | 13 | 0 |
>TRINITY_DN45514_c5_g1_i4 from sample A8 / Example spliced isoformAGGAGATGAACTCAGGCCTCCTCTAAAAACAGAACAAATATTTGTACCGTTTTCCTGAGAGAAAAAGAAGAGATAAGGCATGAACACGGCGATGACGAGCTTTAGCAATGCCATTCTTGCAATATCATGCCCTCGGAGAATACAGGTTCCCATGAACCCAAGTGCAAGGGAAACATGTTGCAATAAAGTGACTTCAAGGT
CGATTCCCAGATTGTATTACAACCATCAAAGCACTAGAATTAAAGGAGTTTATGGGAAAAAGGGGCTAGCTCTTGGAAAGCGTGCGGTGGCAGAAGCTTTGCTTGGTAGGAAGACCACAAAGAGAGAAACAGTGATACCTGATCCCGATTATCGAATACCAGTCATTCTATCAGGTCTTGCAGGTGCATTAATCTACAAA
GATAATCTATTACTTGCTGCACCAATTGGTCTTCTTGGTTTGCTTTTGTTTGTTCAGACTACAAGAGTAAGATTCGTCTTCGATGACGAGACCCTGGAGGTAAGGGTGGGAGATGAGCTTGAAGAGTCTGGTCAAAATGCATTTGTTGGGGGCAAAAACAGATGGAAGTTCTCTACCTTTGTAAATTGGGAGTTTTGGTG
GCCAAACTTCCCAATTTTGGTGTATTTCAAGGAGACCCAGACAAAGCCAGAAGGCCAAGTGCACTTTTTCCCAGTTATTTTTAATGGAAAGCAGCTCTATGATATAATGGTTGAACGGGCTGGACCATCTCAAAATAGTGGACCAAAATAGTCCCCCTTATAGATGTTCTTGGAACTTGTCAAGGAGGATTTTAGATTCC
TATCAGGGAACTTACAAGTAGCAGGAAGTCACAAGGTCTTGATACAAACAGGTATATGGGCTAAATTCCACGTTTACAAATTATGCAGGTCTTTGCATGCAGACAGATGGATTGTTGATATCTGGAGCTTGGAAAGGACACAAGGTTTCAAGGTACTTTATAATAATGTTCTGTGAAGATAGAACAATGGTAGAATTGCC
CTAGAATATAGAATAGCTTACCTCTGGCTCTAGCTATTGCAGACAAAAGAATTGTTGATACCTGGAAATTGGAAAGGAACAGAAGGTTTCAAAGTACTTCAGAATTATGTTAACAATGAAGATTAAACAATGGTAGAATTGCCCTAGAATATAGAATAGCTTACCTCTGGCTCTAGCTATTGCAGACAAAAGAATTGTTG
ATACCT
>TRINITY_DN45514_c5_g1_i3 from sample A8 / Example unspliced isoform:AGGAGATGAACTCAGGCCTCCTCTAAAAACAGAACAAATATTTGTACCGTTTTCCTGAGAGAAAAAGAAGAGATAAGGCATGAACACGGCGATGACGAGCTTTAGCAATGCCATTCTTGCAATATCATGCCCTCGGAGAATACAGGTTCCCATGAACCCAAGTGCAAGGGAAACATGTTGCAATAAAGTGACTTCAAGGT
CGATTCCCAGATTGTATTACAACCATCAAAGCACTAGAATTAAAGGAGTTTATGGGAAAAAGGGGCTAGCTCTTGGAAAGCGTGCGGTGGCAGAAGCTTTGCTTGGTAGGAAGACCACAAAGAGAGAAACAGTGATACCTGATCCCGATTATCGAATACCAGTCATTCTATCAGGTCTTGCAGGTGCATTAATCTACAAA
GATAATCTATTACTTGCTGCACCAATTGGTCTTCTTGGTTTGCTTTTGTTTGTTCAGACTACAAGAGTAAGATTCGTCTTCGATGACGAGACCCTGGAGGTAAGGGTGGGAGATGAGCTTGAAGAGTCTGGTCAAAATGCATTTGTTGGGGGCAAAAACAGATGGAAGTTCTCTACCTTTGTAAATTGGGAGTTTTGGTG
GCCAAACTTCCCAATTTTGGTGTATTTCAAGGAGACCCAGACAAAGCCAGAAGGCCAAGTGCACTTTTTCCCAGTTATTTTTAATGGAAAGCAGCTCTATGATATAATGGTTGAACGGGCTGGACCATCTCAAAATAGTGGACCAAAATAGTCCCCCTTATAGATGTTCTTGTCTTTGCATGCAGACAGATGGATTGTTG
ATATCTGGAGCTTGGAAAGGACACAAGGTTTCAAGGTACTTTATAATAATGTTCTGTGAAGATAGAACAATGGTAGAATTGCCCTAGAATATAGAATAGCTTACCTCTGGCTCTAGCTATTGCAGACAAAAGAATTGTTGATACCTGGAAATTGGAAAGGAACAGAAGGTTTCAAAGTACTTCAGAATTATGTTAACAAT
GAAGATTAAACAATGGTAGAATTGCCCTAGAATATAGAgtgagctttaagctcatatctggctctagctatctcgttctgcatattgcaaactaatacctaaagagaatacggtagtatattatttaagatggtaggttattacttattagttttcatggtgattattttatttgtactgatgaatattttatttgtttg
tcatattctgaacgtgttctattgctttcgaccaaaatggattgcagcttattttctatgcagtatctttggatctgaatagaaatttcaaactacaacactcacaagctcttcattttgaatagATAGCTTACCTCTGGCTCTAGCTATTGCAGACAAAAGAATTGTTGATACCT
Intron 4 GTACTTTATA ... GCTATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 1 | 2 |
| A2 | 100 | 0 | 10 | 2 |
| A3 | 100 | 0 | 1 | 1 |
| A4 | 63.64 | 2 | 4 | 3 |
| A5 | 100 | 0 | 3 | 3 |
| A6 | 89.8 | 5 | 52 | 36 |
| A7 | 86.05 | 3 | 17 | 20 |
| A8 | 70.37 | 12 | 22 | 35 |
| A9 | 67.06 | 14 | 29 | 28 |
| A10 | 84.21 | 3 | 15 | 17 |
>TRINITY_DN45514_c5_g1_i1 from sample A8 / Example spliced isoformAGGAGATGAACTCAGGCCTCCTCTAAAAACAGAACAAATATTTGTACCGTTTTCCTGAGAGAAAAAGAAGAGATAAGGCATGAACACGGCGATGACGAGCTTTAGCAATGCCATTCTTGCAATATCATGCCCTCGGAGAATACAGGTTCCCATGAACCCAAGTGCAAGGGAAACATGTTGCAATAAAGTGACTTCAAGGT
CGATTCCCAGATTGTATTACAACCATCAAAGCACTAGAATTAAAGGAGTTTATGGGAAAAAGGGGCTAGCTCTTGGAAAGCGTGCGGTGGCAGAAGCTTTGCTTGGTAGGAAGACCACAAAGAGAGAAACAGTGATACCTGATCCCGATTATCGAATACCAGTCATTCTATCAGGTCTTGCAGGTGCATTAATCTACAAA
GATAATCTATTACTTGCTGCACCAATTGGTCTTCTTGGTTTGCTTTTGTTTGTTCAGACTACAAGAGTAAGATTCGTCTTCGATGACGAGACCCTGGAGGTAAGGGTGGGAGATGAGCTTGAAGAGTCTGGTCAAAATGCATTTGTTGGGGGCAAAAACAGATGGAAGTTCTCTACCTTTGTAAATTGGGAGTTTTGGTG
GCCAAACTTCCCAATTTTGGTGTATTTCAAGGAGACCCAGACAAAGCCAGAAGGCCAAGTGCACTTTTTCCCAGTTATTTTTGTCTTTGCATGCAGACAGATGGATTGTTGATATCTGGAGCTTGGAAAGGACACAAGGTTTCAAGACAAAAGAATTGTTGATACCTGGAAATTGGAAAGGAACAGAAGGTTTCAAAGTA
CTTCAGAATTATGTTAACAATGAAGATTAAACAATGGTAGAATTGCCCTAGAATATAGAGTGAGCTTTAAGCTCATATCTGGCTCTAGCTATCTCGTTCTGCATATTGCAAACTAATACCTAAAGAGAATACGGTAGTATATTATTTAAGATGGTAGGTTATTACTTATTAGTTTTCATGGTGATTATTTTATTTGTACT
GATGAATATTTTATTTGTTTGTCATATTCTGAACGTGTTCTATTGCTTTCGACCAAAATGGATTGCAGCTTATTTTCTATGCAGTATCTTTGGATCTGAATAGAAATTTCAAACTACAACACTCACAAGCTCTTCATTTTGAATAG
>TRINITY_DN45514_c5_g1_i3 from sample A8 / Example unspliced isoform:AGGAGATGAACTCAGGCCTCCTCTAAAAACAGAACAAATATTTGTACCGTTTTCCTGAGAGAAAAAGAAGAGATAAGGCATGAACACGGCGATGACGAGCTTTAGCAATGCCATTCTTGCAATATCATGCCCTCGGAGAATACAGGTTCCCATGAACCCAAGTGCAAGGGAAACATGTTGCAATAAAGTGACTTCAAGGT
CGATTCCCAGATTGTATTACAACCATCAAAGCACTAGAATTAAAGGAGTTTATGGGAAAAAGGGGCTAGCTCTTGGAAAGCGTGCGGTGGCAGAAGCTTTGCTTGGTAGGAAGACCACAAAGAGAGAAACAGTGATACCTGATCCCGATTATCGAATACCAGTCATTCTATCAGGTCTTGCAGGTGCATTAATCTACAAA
GATAATCTATTACTTGCTGCACCAATTGGTCTTCTTGGTTTGCTTTTGTTTGTTCAGACTACAAGAGTAAGATTCGTCTTCGATGACGAGACCCTGGAGGTAAGGGTGGGAGATGAGCTTGAAGAGTCTGGTCAAAATGCATTTGTTGGGGGCAAAAACAGATGGAAGTTCTCTACCTTTGTAAATTGGGAGTTTTGGTG
GCCAAACTTCCCAATTTTGGTGTATTTCAAGGAGACCCAGACAAAGCCAGAAGGCCAAGTGCACTTTTTCCCAGTTATTTTTAATGGAAAGCAGCTCTATGATATAATGGTTGAACGGGCTGGACCATCTCAAAATAGTGGACCAAAATAGTCCCCCTTATAGATGTTCTTGTCTTTGCATGCAGACAGATGGATTGTTG
ATATCTGGAGCTTGGAAAGGACACAAGGTTTCAAGgtactttataataatgttctgtgaagatagaacaatggtagaattgccctagaatatagaatagcttacctctggctctagctattgcagACAAAAGAATTGTTGATACCTGGAAATTGGAAAGGAACAGAAGGTTTCAAAGTACTTCAGAATTATGTTAACAAT
GAAGATTAAACAATGGTAGAATTGCCCTAGAATATAGAGTGAGCTTTAAGCTCATATCTGGCTCTAGCTATCTCGTTCTGCATATTGCAAACTAATACCTAAAGAGAATACGGTAGTATATTATTTAAGATGGTAGGTTATTACTTATTAGTTTTCATGGTGATTATTTTATTTGTACTGATGAATATTTTATTTGTTTG
TCATATTCTGAACGTGTTCTATTGCTTTCGACCAAAATGGATTGCAGCTTATTTTCTATGCAGTATCTTTGGATCTGAATAGAAATTTCAAACTACAACACTCACAAGCTCTTCATTTTGAATAGATAGCTTACCTCTGGCTCTAGCTATTGCAGACAAAAGAATTGTTGATACCT