sp|Q3ED65|MENG_ARATH ----> 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic
Intron 1 GTAATGCATC ... TGTATAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25 | 6 | 4.5 | 2 |
| A2 | 50 | 2 | 0 | 2 |
| A3 | 16.67 | 5 | 0.5 | 1 |
| A4 | 33.33 | 6 | 0.3 | 3 |
| A5 | 0 | 1 | 0 | 0 |
| A6 | 16.67 | 10 | 0.5 | 2 |
| A7 | 35.71 | 9 | 0 | 5 |
| A8 | 37.5 | 5 | 3 | 3 |
| A9 | 21.74 | 18 | 0.8 | 5 |
| A10 | 47.62 | 11 | 2 | 10 |
>TRINITY_DN38585_c0_g1_i5 from sample A8 / Example spliced isoformCATAAAGAAAACCAGCAGCGCAAAACTCGTTCATTGGCAAAATTGGACATGGCCTTCTTGACAACCCAATTCATCATCCGTGGTGATAATGGCCTGTGCCAGTTCCCAAGAACTCCCACAACTCCTTGCAACGATGGTTTCCTGCAACATCTGCCACTCCAAAGGAGAAGGAGAAAAGAAAGGGCCATGGCAAGGGCAGT
ATCGAGCAGTACCCATAACAATAATGAGGCTATTTCTACTCAAGTTCCTTTCACTGAAGGTGAACTGGATCGACCACGCTGGACTGGGGATACGCCAATCTCACGTCTTGTAGCAGGCCTGATTGCGATCAAACCTATCTATAATCTTATGAAGTTGGGTGCCAGACAAGTTCTTATCAGGACAGCGGAGAAAAATGGAA
TTGCGTGGAGAGATATGGCAAGGGAGATTCTCGAATCAGAAGTTTACAAGGAGAAGGAACTCATCGAGAACCCTTCTATTGTCTACCCAGATTATTATTTGAAGCCATTCCATGCTTACGAGCAAGGAAACTTATCTTGGGAGGCAGCAGCAGAAGTAGAAGCAGCGACCATGTCCATGACGAGGCGTGCGATTCCATCT
GCTGCATCTCTGGAGGATGCAACTCGGGTAGTGAGAGAGAACTGGCTTCAGGAAATTGAAGACCATCACACCAAAAACTCAGGTGGCCTTGGTATAGCTGACATTCTTGATGTGGGTTGCTCTGTTGGAGTCAGCACAAGATTTCTAGCTGATAAATTTCCTCTTGCTAATGTTATTGGGTTGGATCTTTCTCCCTACTT
CCTCGCAGTAGCTCAATATAAAGAGAAAAGAAGACCTTTAAGAGAGAAACCCATCAAGTGGATTCATGCAAATGGGGAAGCAACTGGTCTTCCTTCTGCATCATTAGACATTGTTTCTTTTTCTTTTGTGACACACGAATGCCCTCAAACTGCAATCAGGAATTTGCTTAAGGAAGCTTTCCGAGTCCTTAGGCCCGGAG
GCACTGTGGCTTTGACAGATAACTCACCTAAATCTAAGATCTTACAGAATCTACCACCGGTGTTATTTACTTTGATGAAAAGTACAGAACCGCATTTGGATGAATATTACTTAATGGACTTGGAGAACACAATGGTGGAAATTGGTTTTATTCATGTCCGGTCTGTCCTTACTGACCCAAGACACAGAACAGTAACTGGT
TCTGTACCGAAGCTATAACTATCCATCTTTGTTTCTTTATATGGACTTTCCAATTAATGAAAAATATAGTATGTGGGTTAAAGGTACCGATTGTACCTACAATATTGACACTGTTTTCTTATAATCTAGATGACAAATTCATAGCAGTGCAGTTCTTCCTTGCTGTGAGAAGGATGGTTTACAATGTGCAAGAATGGGCA
TATTTGAACCAACAGAAGTTGCTCTTAGACAGACCAGTCTCCCAAGGAGAAAAAGGCTGGCCCTTAGACTAGTTCCCCTACTGATGGATGATAGAAATTATTCTGTAAAAATAATTATTTTTTGTTATTTGAAGAAGAGAACTCGATTCAAGGATTTTCCAAATGATAGCTATTTGCAAGCCGCTCCTTTCTTGGTCACT
TAAAAAAGATAGTCTTCTGAAAAACCTGTCTAATTGGATTCCACACTATATTTTTCAAGGGTTAATCAAGGAAGAATCAGTGTTAGAAAACTTTATTCTCAACTTGAGGTCATCCTGGTTGTTGACATGTATTTATTCTAGGTTCTGATTAATAGATTGAAATATGGAATGGG
>TRINITY_DN38585_c0_g1_i6 from sample A8 / Example unspliced isoform:TTTTCTGAACACTGCTGTCTTTTAGATTATTTGAAGCCATTCCATGCTTACGAGCAAGGAAACTTATCTTGGGAGgtaatgcatcacaatgcttaacgtttctgtcctttaaataattagaactctaagaaatctgaactagaacctgatcaaatccctgatcaatgtaaaccctaaaccctatagcattatgaaatctg
aaatatattatgttctaaacaagaaaattgtcaacagtgacaatctaatcacgctatgcaggcatgatgtatagcagGCAGCAGCAGAAGTAGAAGCAGCGACCATGTCCATGACGAGGCGTGCGATTCCATCTGCTGCATCTCTGGAGGATGCAACTCGGGTAGTGAGAGAGAACTGGCTTCAGGAAATTGAAGACCAT
CACACCAAAAACTCAGGTGGCCTTGGTATAGCTGACATTCTTGATGTGGGTTGCTCTGTTGGAGTCAGCACAAGATTTCTAGCTGATAAATTTCCTCTTGCTAATGTTATTGTGAGTACTACATCTGCTTTTGATTTCTAGTCCGCAATCTTTTGGGAGGCTTGAATTTGTTTGCTGTCGCCACAAATAACTCTGTTGTG
ACAGGGGTTGGATCTTTCTCCCTACTTCCTCGCAGTAGCTCAATATAAAGAGAAAAGAAGACCTTTAAGAGAGAAACCCATCAAGTGGATTCATGCAAATGGGGAAGCAACTGGTCTTCCTTCTGCATCATTAGACATTGTTTCTTTTTCTTTTGTGACACACGAATGCCCTCAAACTGCAATCAGGAATTTGCTTAAGG
AAGCTTTCCGAGTCCTTAGGCCCGGAGGCACTGTGGCTTTGACAGATAACTCACCTAAATCTAAGATCTTACAGAATCTACCACCGGTGTTATTTACTTTGATGAAAAGTACAGAACCGCATTTGGATGAATATTACTTAATGGACTTGGAGAACACAATGGTGGAAATTGGTTTTATTCATGTCCGGTCTGTCCTTACT
GACCCAAGACACAGAACAGTAACTGGTTCTGTACCGAAGCTATAACTATCCATCTTTGTTTCTTTATATGGACTTTCCAATTAATGAAAAATATAGTATGTGGGTTAAAGGTACCGATTGTACCTACAATATTGACACTGTTTTCTTATAATCTAGATGACAAATTCATAGCAGTGCAGTTCTTCCTTGCTGTGAGAAGG
ATGGTTTACAATGTGCAAGAATGGGCATATTTGAACCAACAGAAGTTGCTCTTAGACAGACCAGTCTCCCAAGGAGAAAAAGGCTGGCCCTTAGACTAGTTCCCCTACTGATGGATGATAGAAATTATTCTGTAAAAATAATTATTTTTTGTTATTTGAAGAAGAGAACTCGATTCAAGGATTTTCCAAATGATAGCTAT
TTGCAAGCCGCTCCTTTCTTGGTCACTTAAAAAAGATAGTCTTCTGAAAAACCTGTCTAATTGGATTCCACACTATATTTTTCAAGGGTTAATCAAGGAAGAATCAGTGTTAGAAAACTTTATTCTCAACTTGAGGTCATCCTGGTTGTTGACATGTATTTATTCTAGGTTCTGATTAATAGATTGAAATATGGAATGGG
Intron 2 GTAAGATGGA ... TGTCTTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.18 | 5 | 5 | 2 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | 30.43 | 8 | 2 | 5 |
| A4 | 20 | 4 | 1 | 1 |
| A5 | 33.33 | 5 | 5 | 0 |
| A6 | 20 | 10 | 2 | 3 |
| A7 | 37.5 | 5 | 1 | 5 |
| A8 | 30 | 7 | 5 | 1 |
| A9 | 21.95 | 16 | 4 | 5 |
| A10 | 25.93 | 10 | 2 | 5 |
>TRINITY_DN35370_c0_g1_i2 from sample A7 / Example spliced isoformCAGCAGCGCAAAACTCGTTCATTGGCAAAATTGGACATGGCCTTCTTGACAACCCAATTCATCATCCGTGGTGATAATGGCCTGTGCCAGTTCCCAAGAACTCCCACAACTCCTTGCAACGATGGTTTCCTGCAACATCTGCCACTCCAAAGGAGAAGGAGAAAAGAAAGGGCCATGGCAAGGGCAGTATCGAGCAGTAC
CCATAACAATAATGAGGCTATTTCTACTCAAGTTCCTTTCACTGAAGGTGAACTGGATCGACCACGCTGGACTGGGGATACGCCAATCTCACGTCTTGTAGCAGGCCTGATTGCGATCAAACCTATCTATAATCTTATGAAGTTGGGTGCCAGACAAGTTCTTATCAGGACAGCGGAGAAAAATGGAATTGCGTGGAGAG
ATATGGCAAGGGAGATTCTCGAATCAGAAGTTTACAAGGAGAAGGAACTCATCGAGAACCCTTCTATTGTCTACCCAGATTATTATTTGAAGCCATTCCATGCTTACGAGCAAGGAAACTTATCTTGGGAGGCAGCAGCAGAAGTAGAAGCAGCGACCATGTCCATGACGAGGCGTGCGATTCCATCTGCTGCATCTCTG
GAGGATGCAACTCGGGTAGTGAGAGAGAACTGGCTTCAGGAAATTGAAGACCATCACACCAAAAACTCAGGTGGCCTTGGTATAGCTGACATTCTTGATGTGGGTTGCTCTGTTGGAGTCAGCACAAGATTTCTAGCTGATAAATTTCCTCTTGCTAATGTTATTGGGTTGGATCTTTCTCCCTACTTCCTCGCAGTAGC
TCAATATAAAGAGAAAAGAAGACCTTTAAGAGAGAAACCCATCAAGTGGATTCATGCAAATGGGGAAGCAACTGGTCTTCCTTCTGCATCATTAGACATTGTTTCTTTTTCTTTTGTGACACACGAATGCCCTCAAACTGCAATCAGGAATTTGCTTAAGGAAGCTTTCCGAGTCCTTAGGCCCGGAGGCACTGTGGCTT
TGACAGATAACTCACCTAAATCTAAGATCTTACAGAATCTACCACCGGTGTTATTTACTTTGATGAAAAGTACAGAACCGCATTTGGATGAATATTACTTAATGGACTTGGAGAACACAATGGTGGAAATTGGTTTTATTCATGTCCGGTCTGTCCTTACTGACCCAAGACACAGAACAGTAACTGGTTCTGTACCGAAG
CTATAACTATCCATCTTTGTTTCTTTATATGGACTTTCCAATTAATGAAAAATATAGTATGTGGGTTAAAGGTACCGATTGTACCTACAATATTGACACTGTTTTCTTATAATCTAGATGACAAATTCATAGCAGTGCAGTTCTTCCTTGCTGTGAGAAGGATGGTTTACAATGTGCAAGAATGGGCATATTTGAACCAA
CAGAAGTTGCTCTTAGACAGACCAGTCTCCCAAGGAGAAAAAGGCTGGCCCTTAGACTAGTTCCCCTACTGATGGATGATAGAAATTATTCTGTAAAAATAATTATTTTTTGTTATTTGAAGAAGAGAACTCGATTCAAGGATTTTCCAAATGATAGCTATTTGCAAGCCGCTCCTTTCTTGGTCACTTAAAAAAGATAG
TCTTCTGAAAAACCTGTCTAATTGGATTCCACACTATATTTTTCAAGGGTTAATCAAGGAAGAATCAGTGTTAGAAAACTTTATTCTCAACTTGAGGTCATCCTGGTTGTTGACATGTATTTATTCTAGGTTCTGATTAATAGATTGAAA
>TRINITY_DN35370_c0_g1_i4 from sample A7 / Example unspliced isoform:CAGCAGCGCAAAACTCGTTCATTGGCAAAATTGGACATGGCCTTCTTGACAACCCAATTCATCATCCGTGGTGATAATGGCCTGTGCCAGTTCCCAAGAACTCCCACAACTCCTTGCAACGATGGTTTCCTGCAACATCTGCCACTCCAAAGGAGAAGGAGAAAAGAAAGGGCCATGGCAAGGGCAGTATCGAGCAGTAC
CCATAACAATAATGAGGCTATTTCTACTCAAGTTCCTTTCACTGAAGGTGAACTGGATCGACCACGCTGGACTGGGGATACGCCAATCTCACGTCTTGTAGCAGGCCTGATTGCGATCAAACCTATCTATAATCTTATGAAGTTGGGTGCCAGACAAGTTCTTATCAGGACAGCGGAGAAAAATGGAATTGCGTGGAGAG
ATATGGCAAGGGAGATTCTCGAATCAGAAGTTTACAAGGAGAAGGAACTCATCGAGAACCCTTCTATTGTCTACCCAGATTgtaagatggagaccatggcattcacctgtgtggatcagttttgattatgtgtatctgcttcttgattcactgcttcaggactttgccttttaaaaaatattttttgcaccagttcagtt
tttcagcattttactcaaattgatcatctgatcttgctttttttttctttttctgaacactgctgtcttttagATTATTTGAAGCCATTCCATGCTTACGAGCAAGGAAACTTATCTTGGGAGGCAGCAGCAGAAGTAGAAGCAGCGACCATGTCCATGACGAGGCGTGCGATTCCATCTGCTGCATCTCTGGAGGATGC
AACTCGGGTAGTGAGAGAGAACTGGCTTCAGGAAATTGAAGACCATCACACCAAAAACTCAGGTGGCCTTGGTATAGCTGACATTCTTGATGTGGGTTGCTCTGTTGGAGTCAGCACAAGATTTCTAGCTGATAAATTTCCTCTTGCTAATGTTATTGGGTTGGATCTTTCTCCCTACTTCCTCGCAGTAGCTCAATATA
AAGAGAAAAGAAGACCTTTAAGAGAGAAACCCATCAAGTGGATTCATGCAAATGGGGAAGCAACTGGTCTTCCTTCTGCATCATTAGACATTGTTTCTTTTTCTTTTGTGACACACGAATGCCCTCAAACTGCAATCAGGAATTTGCTTAAGGAAGCTTTCCGAGTCCTTAGGCCCGGAGGCACTGTGGCTTTGACAGAT
AACTCACCTAAATCTAAGATCT
Intron 3 GTAATGCATC ... CGCTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 38.46 | 4 | 4 | 1 |
| A2 | 33.33 | 2 | 0 | 2 |
| A3 | 0 | 4 | 0 | 0 |
| A4 | 9.09 | 5 | 0 | 1 |
| A5 | 0 | 1 | 0 | 0 |
| A6 | 0 | 8 | 0 | 0 |
| A7 | 14.29 | 6 | 0 | 2 |
| A8 | 37.5 | 5 | 3 | 3 |
| A9 | 9.68 | 14 | 0 | 3 |
| A10 | 41.18 | 10 | 2 | 12 |
>TRINITY_DN38585_c0_g1_i2 from sample A8 / Example spliced isoformCATAAAGAAAACCAGCAGCGCAAAACTCGTTCATTGGCAAAATTGGACATGGCCTTCTTGACAACCCAATTCATCATCCGTGGTGATAATGGCCTGTGCCAGTTCCCAAGAACTCCCACAACTCCTTGCAACGATGGTTTCCTGCAACATCTGCCACTCCAAAGGAGAAGGAGAAAAGAAAGGGCCATGGCAAGGGCAGT
ATCGAGCAGTACCCATAACAATAATGAGGCTATTTCTACTCAAGTTCCTTTCACTGAAGGTGAACTGGATCGACCACGCTGGACTGGGGATACGCCAATCTCACGTCTTGTAGCAGGCCTGATTGCGATCAAACCTATCTATAATCTTATGAAGTTGGGTGCCAGACAAGTTCTTATCAGGACAGCGGAGAAAAATGGAA
TTGCGTGGAGAGATATGGCAAGGGAGATTCTCGAATCAGAAGTTTACAAGGAGAAGGAACTCATCGAGAACCCTTCTATTGTCTACCCAGATTATTATTTGAAGCCATTCCATGCTTACGAGCAAGGAAACTTATCTTGGGAGGCATGATGTATAGCAGGCAGCAGCAGAAGTAGAAGCAGCGACCATGTCCATGACGAG
GCGTGCGATTCCATCTGCTGCATCTCTGGAGGATGCAACTCGGGTAGTGAGAGAGAACTGGCTTCAGGAAATTGAAGACCATCACACCAAAAACTCAGGTGGCCTTGGTATAGCTGACATTCTTGATGTGGGTTGCTCTGTTGGAGTCAGCACAAGATTTCTAGCTGATAAATTTCCTCTTGCTAATGTTATTGGGTTGG
ATCTTTCTCCCTACTTCCTCGCAGTAGCTCAATATAAAGAGAAAAGAAGACCTTTAAGAGAGAAACCCATCAAGTGGATTCATGCAAATGGGGAAGCAACTGGTCTTCCTTCTGCATCATTAGACATTGTTTCTTTTTCTTTTGTGACACACGAATGCCCTCAAACTGCAATCAGGAATTTGCTTAAGGAAGCTTTCCGA
GTCCTTAGGCCCGGAGGCACTGTGGCTTTGACAGATAACTCACCTAAATCTAAGATCTTACAGAATCTACCACCGGTGTTATTTACTTTGATGAAAAGTACAGAACCGCATTTGGATGAATATTACTTAATGGACTTGGAGAACACAATGGTGGAAATTGGTTTTATTCATGTCCGGTCTGTCCTTACTGACCCAAGACA
CAGAACAGTAACTGGTTCTGTACCGAAGCTATAACTATCCATCTTTGTTTCTTTATATGGACTTTCCAATTAATGAAAAATATAGTATGTGGGTTAAAGGTACCGATTGTACCTACAATATTGACACTGTTTTCTTATAATCTAGATGACAAATTCATAGCAGTGCAGTTCTTCCTTGCTGTGAGAAGGATGGTTTACAA
TGTGCAAGAATGGGCATATTTGAACCAACAGAAGTTGCTCTTAGACAGACCAGTCTCCCAAGGAGAAAAAGGCTGGCCCTTAGACTAGTTCCCCTACTGATGGATGATAGAAATTATTCTGTAAAAATAATTATTTTTTGTTATTTGAAGAAGAGAACTCGATTCAAGGATTTTCCAAATGATAGCTATTTGCAAGCCGC
TCCTTTCTTGGTCACTTAAAAAAGATAGTCTTCTGAAAAACCTGTCTAATTGGATTCCACACTATATTTTTCAAGGGTTAATCAAGGAAGAATCAGTGTTAGAAAACTTTATTCTCAACTTGAGGTCATCCTGGTTGTTGACATGTATTTATTCTAGGTTCTGATTAATAGATTGAAATATGGAATGGG
>TRINITY_DN38585_c0_g1_i7 from sample A8 / Example unspliced isoform:TTTTCTGAACACTGCTGTCTTTTAGATTATTTGAAGCCATTCCATGCTTACGAGCAAGGAAACTTATCTTGGGAGgtaatgcatcacaatgcttaacgtttctgtcctttaaataattagaactctaagaaatctgaactagaacctgatcaaatccctgatcaatgtaaaccctaaaccctatagcattatgaaatctg
aaatatattatgttctaaacaagaaaattgtcaacagtgacaatctaatcacgctatgcagGCATGATGTATAGCAGGCAGCAGCAGAAGTAGAAGCAGCGACCATGTCCATGACGAGGCGTGCGATTCCATCTGCTGCATCTCTGGAGGATGCAACTCGGGTAGTGAGAGAGAACTGGCTTCAGGAAATTGAAGACCAT
CACACCAAAAACTCAGGTGGCCTTGGTATAGCTGACATTCTTGATGTGGGTTGCTCTGTTGGAGTCAGCACAAGATTTCTAGCTGATAAATTTCCTCTTGCTAATGTTATTGGGTTGGATCTTTCTCCCTACTTCCTCGCAGTAGCTCAATATAAAGAGAAAAGAAGACCTTTAAGAGAGAAACCCATCAAGTGGATTCA
TGCAAATGGGGAAGCAACTGGTCTTCCTTCTGCATCATTAGACATTGTTTCTTTTTCTTTTGTGTGATGTTGATATTGCAGACACACGAATGCCCTCAAACTGCAATCAGGAATTTGCTTAAGGAAGCTTTCCGAGTCCTTAGGCCCGGAGGCACTGTGGCTTTGACAGATAACTCACCTAAATCTAAGATCTTACAGAA
TCTACCACCGGTGTTATTTACTTTGATGAAAAGTACAGAACCGCATTTGGATGAATATTACTTAATGGACTTGGAGAACACAATGGTGGAAATTGGTTTTATTCATGTCCGGTCTGTCCTTACTGACCCAAGACACAGAACAGTAACTGGTTCTGTACCGAAGCTATAACTATCCATCTTTGTTTCTTTATATGGACTTT
CCAATTAATGAAAAATATAGTATGTGGGTTAAAGGTACCGATTGTACCTACAATATTGACACTGTTTTCTTATAATCTAGATGACAAATTCATAGCAGTGCAGTTCTTCCTTGCTGTGAGAAGGATGGTTTACAATGTGCAAGAATGGGCATATTTGAACCAACAGAAGTTGCTCTTAGACAGACCAGTCTCCCAAGGAG
AAAAAGGCTGGCCCTTAGACTAGTTCCCCTACTGATGGATGATAGAAATTATTCTGTAAAAATAATTATTTTTTGTTATTTGAAGAAGAGAACTCGATTCAAGGATTTTCCAAATGATAGCTATTTGCAAGCCGCTCCTTTCTTGGTCACTTAAAAAAGATAGTCTTCTGAAAAACCTGTCTAATTGGATTCCACACTAT
ATTTTTCAAGGGTTAATCAAGGAAGAATCAGTGTTAGAAAACTTTATTCTCAACTTGAGGTCATCCTGGTTGTTGACATGTATTTATTCTAGGTTCTGATTAATAGATTGAAATATGGAATGGG
Intron 4 GTGAGTACTA ... GTTGTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.41 | 6 | 3 | 2 |
| A2 | 33.33 | 4 | 2 | 2 |
| A3 | 100 | 0 | 0 | 1 |
| A4 | 0 | 3 | 0 | 0 |
| A5 | 20 | 2 | 1 | 0 |
| A6 | 22.22 | 7 | 2 | 2 |
| A7 | 25 | 3 | 2 | 0 |
| A8 | 15.79 | 8 | 1 | 2 |
| A9 | 14.29 | 15 | 2 | 3 |
| A10 | 20 | 4 | 0 | 2 |
>TRINITY_DN38585_c0_g1_i2 from sample A8 / Example spliced isoformCATAAAGAAAACCAGCAGCGCAAAACTCGTTCATTGGCAAAATTGGACATGGCCTTCTTGACAACCCAATTCATCATCCGTGGTGATAATGGCCTGTGCCAGTTCCCAAGAACTCCCACAACTCCTTGCAACGATGGTTTCCTGCAACATCTGCCACTCCAAAGGAGAAGGAGAAAAGAAAGGGCCATGGCAAGGGCAGT
ATCGAGCAGTACCCATAACAATAATGAGGCTATTTCTACTCAAGTTCCTTTCACTGAAGGTGAACTGGATCGACCACGCTGGACTGGGGATACGCCAATCTCACGTCTTGTAGCAGGCCTGATTGCGATCAAACCTATCTATAATCTTATGAAGTTGGGTGCCAGACAAGTTCTTATCAGGACAGCGGAGAAAAATGGAA
TTGCGTGGAGAGATATGGCAAGGGAGATTCTCGAATCAGAAGTTTACAAGGAGAAGGAACTCATCGAGAACCCTTCTATTGTCTACCCAGATTATTATTTGAAGCCATTCCATGCTTACGAGCAAGGAAACTTATCTTGGGAGGCATGATGTATAGCAGGCAGCAGCAGAAGTAGAAGCAGCGACCATGTCCATGACGAG
GCGTGCGATTCCATCTGCTGCATCTCTGGAGGATGCAACTCGGGTAGTGAGAGAGAACTGGCTTCAGGAAATTGAAGACCATCACACCAAAAACTCAGGTGGCCTTGGTATAGCTGACATTCTTGATGTGGGTTGCTCTGTTGGAGTCAGCACAAGATTTCTAGCTGATAAATTTCCTCTTGCTAATGTTATTGGGTTGG
ATCTTTCTCCCTACTTCCTCGCAGTAGCTCAATATAAAGAGAAAAGAAGACCTTTAAGAGAGAAACCCATCAAGTGGATTCATGCAAATGGGGAAGCAACTGGTCTTCCTTCTGCATCATTAGACATTGTTTCTTTTTCTTTTGTGACACACGAATGCCCTCAAACTGCAATCAGGAATTTGCTTAAGGAAGCTTTCCGA
GTCCTTAGGCCCGGAGGCACTGTGGCTTTGACAGATAACTCACCTAAATCTAAGATCTTACAGAATCTACCACCGGTGTTATTTACTTTGATGAAAAGTACAGAACCGCATTTGGATGAATATTACTTAATGGACTTGGAGAACACAATGGTGGAAATTGGTTTTATTCATGTCCGGTCTGTCCTTACTGACCCAAGACA
CAGAACAGTAACTGGTTCTGTACCGAAGCTATAACTATCCATCTTTGTTTCTTTATATGGACTTTCCAATTAATGAAAAATATAGTATGTGGGTTAAAGGTACCGATTGTACCTACAATATTGACACTGTTTTCTTATAATCTAGATGACAAATTCATAGCAGTGCAGTTCTTCCTTGCTGTGAGAAGGATGGTTTACAA
TGTGCAAGAATGGGCATATTTGAACCAACAGAAGTTGCTCTTAGACAGACCAGTCTCCCAAGGAGAAAAAGGCTGGCCCTTAGACTAGTTCCCCTACTGATGGATGATAGAAATTATTCTGTAAAAATAATTATTTTTTGTTATTTGAAGAAGAGAACTCGATTCAAGGATTTTCCAAATGATAGCTATTTGCAAGCCGC
TCCTTTCTTGGTCACTTAAAAAAGATAGTCTTCTGAAAAACCTGTCTAATTGGATTCCACACTATATTTTTCAAGGGTTAATCAAGGAAGAATCAGTGTTAGAAAACTTTATTCTCAACTTGAGGTCATCCTGGTTGTTGACATGTATTTATTCTAGGTTCTGATTAATAGATTGAAATATGGAATGGG
>TRINITY_DN38585_c0_g1_i6 from sample A8 / Example unspliced isoform:TTTTCTGAACACTGCTGTCTTTTAGATTATTTGAAGCCATTCCATGCTTACGAGCAAGGAAACTTATCTTGGGAGGTAATGCATCACAATGCTTAACGTTTCTGTCCTTTAAATAATTAGAACTCTAAGAAATCTGAACTAGAACCTGATCAAATCCCTGATCAATGTAAACCCTAAACCCTATAGCATTATGAAATCTG
AAATATATTATGTTCTAAACAAGAAAATTGTCAACAGTGACAATCTAATCACGCTATGCAGGCATGATGTATAGCAGGCAGCAGCAGAAGTAGAAGCAGCGACCATGTCCATGACGAGGCGTGCGATTCCATCTGCTGCATCTCTGGAGGATGCAACTCGGGTAGTGAGAGAGAACTGGCTTCAGGAAATTGAAGACCAT
CACACCAAAAACTCAGGTGGCCTTGGTATAGCTGACATTCTTGATGTGGGTTGCTCTGTTGGAGTCAGCACAAGATTTCTAGCTGATAAATTTCCTCTTGCTAATGTTATTgtgagtactacatctgcttttgatttctagtccgcaatcttttgggaggcttgaatttgtttgctgtcgccacaaataactctgttgtg
acagGGGTTGGATCTTTCTCCCTACTTCCTCGCAGTAGCTCAATATAAAGAGAAAAGAAGACCTTTAAGAGAGAAACCCATCAAGTGGATTCATGCAAATGGGGAAGCAACTGGTCTTCCTTCTGCATCATTAGACATTGTTTCTTTTTCTTTTGTGACACACGAATGCCCTCAAACTGCAATCAGGAATTTGCTTAAGG
AAGCTTTCCGAGTCCTTAGGCCCGGAGGCACTGTGGCTTTGACAGATAACTCACCTAAATCTAAGATCTTACAGAATCTACCACCGGTGTTATTTACTTTGATGAAAAGTACAGAACCGCATTTGGATGAATATTACTTAATGGACTTGGAGAACACAATGGTGGAAATTGGTTTTATTCATGTCCGGTCTGTCCTTACT
GACCCAAGACACAGAACAGTAACTGGTTCTGTACCGAAGCTATAACTATCCATCTTTGTTTCTTTATATGGACTTTCCAATTAATGAAAAATATAGTATGTGGGTTAAAGGTACCGATTGTACCTACAATATTGACACTGTTTTCTTATAATCTAGATGACAAATTCATAGCAGTGCAGTTCTTCCTTGCTGTGAGAAGG
ATGGTTTACAATGTGCAAGAATGGGCATATTTGAACCAACAGAAGTTGCTCTTAGACAGACCAGTCTCCCAAGGAGAAAAAGGCTGGCCCTTAGACTAGTTCCCCTACTGATGGATGATAGAAATTATTCTGTAAAAATAATTATTTTTTGTTATTTGAAGAAGAGAACTCGATTCAAGGATTTTCCAAATGATAGCTAT
TTGCAAGCCGCTCCTTTCTTGGTCACTTAAAAAAGATAGTCTTCTGAAAAACCTGTCTAATTGGATTCCACACTATATTTTTCAAGGGTTAATCAAGGAAGAATCAGTGTTAGAAAACTTTATTCTCAACTTGAGGTCATCCTGGTTGTTGACATGTATTTATTCTAGGTTCTGATTAATAGATTGAAATATGGAATGGG
Intron 5 GTAAGAGCCT ... TATTCTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 3 | 4 | 3 |
| A2 | 0 | 4 | 0 | 0 |
| A3 | 0 | 2 | 0 | 0 |
| A4 | 100 | 0 | 1 | 2 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 7.14 | 13 | 0 | 1 |
| A7 | 35.71 | 18 | 0 | 10 |
| A8 | 29.63 | 19 | 0 | 8 |
| A9 | 18.18 | 9 | 0 | 2 |
| A10 | 20 | 12 | 0 | 3 |
>TRINITY_DN97571_c0_g1_i3 from sample A1 / Example spliced isoformCCACGCTATAAAGTAAGGGTTGATGATTAAGTTTCAGTTGAGATGTATTTAGCTGCAAAAAATTCACATCCATAGATTCATGCCTATGCATTTTGTTCAGGACAGCGGAGAAAAATGGAATTGCGTGGAGAGATATGGCAAGGGAGATTCTCGAATCAGAAGTTTACAAGGAGAAGGAACTCATCGAGAACCCTTCTATT
GTCTACCCAGATTATTATTTGAAGCCATTCCATGCTTACGAGCAAGGAAACTTATCTTGGGAGGCAGCAGCAGAAGTAGAAGCAGCGACCATGTCCATGACGAGGCGTGCGATTCCATCTGCTGCATCTCTGGAGGATGCAACTCGGGTAGTGAGAGAGAACTGGCTTCAGGAAATTGAAGACCATCACACCAAAAACTC
AGGTGGCCTTGGTATAGCTGACATTCTTGATGTGGGTTGCTCTGTTGGAGTCAGCACAAGATTTCTAGCTGATAAATTTCCTCTTGCTAATGTTATTGGGTTGGATCTTTCTCCCTACTTCCTCGCAGTAGCTCAATATAAAGAGAAAAGAAGACCTTTAAGAGAGAAACCCATCAAGTGGATTCATGCAAATGGGGAAG
CAACTGGTCTTCCTTCTGCATCATTAGACATTGTTTCTTTTTCTTTTGTGACACACGAATGCCCTCAAACTGCAATCAGGAATTTGCTTAAGGAAGCTTTCCGAGTCCTTAGGCCCGGAGGCACTGTGGCTTTGACAGATAACTCACCTAAATCTAAGATCTTACAGAATCTACCACCGGTGTTATTTACTTTGATGAAA
AGTACAGAACCGCATTTGGATGAATATTACTTAATGGACTTGGAGAACACAATGGTGGAAATTGGTTTTATTCATGTCCGGTCTGTCCTTACTGACCCAAGACACAGAACAGTAACTGGTTCTGTACCGAAGCTATAACTATCCATCTTTGTTTCTTTATATGGACTTTCCAATTAATGAAAAATATAGTATGTGGGTTA
AAGGTACCGATTGTACCTACAATATTGACACTGTTTTCTTATAATCTAGATGACAAATTCATAGCAGTGCAGTTCTTCCTTGCTGTGAGAAGGATGGTTTACAATGTGCAAGAATGGGCATATTTGAACCAACAGAAGTTGCTCTTAGACAGACCAGTCTCCCAAGGAGAAAAAGGCTGGCCCTTAGACTAGTTCCCCTA
CTG
>TRINITY_DN97571_c0_g1_i2 from sample A1 / Example unspliced isoform:CAAGGCATACCTGATCATTTGTTCATGTTATATGAAGACAAGCCTGATAGATTCTGATTGTATACATTTTGTTTTTTGTTTTGTGATTTGTTGTGCAGCCTAAATCTAAGATCTTACAGgtaagagcctgtctttcttgacaaaaacagagtaaatttccacgcacatcaatattttgtcttaaaaataaaataggtttc
agttattgtaaacaaggaaattttcttacctcctgctttctattctacagAATCTACCACCGGTGTTATTTACTTTGATGAAAAGTACAGAACCGCATTTGGATGAATATTACTTAATGGACTTGGAGAACACAATGGTGGAAATTGGTTTTATTCATGTCCGGTCTGTCCTTACTGACCCAAGACACAGAACAGTAACT
GGTTCTGTACCGAAGCTATAACTATCCATCTTTGTTTCTTTATATGGACTTTCCAATTAATGAAAAATATAGTATGTGGGTTAAAGGTACCGATTGTACCTACAATATTGACACTGTTTTCTTATAATCTAGATGACAAATTCATAGCAGTGCAGTTCTTCCTTGCTGTGAGAAGGATGGTTTACAATGTGCAAGAATGG
GCATATTTGAACCAACAGAAGTTGCTCTTAGACAGACCAGTCTCCCAAGGAGAAAAAGGCTGGCCCTTAGACTAGTTCCCCTACTG
Intron 6 GTGAGTGATT ... TGTTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 2 | 0 | 2 |
| A2 | 11.11 | 4 | 1 | 0 |
| A3 | 0 | 2 | 0 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 0 | 15 | 0 | 0 |
| A7 | 0 | 16 | 0 | 0 |
| A8 | 2.7 | 18 | 1 | 0 |
| A9 | 10 | 9 | 1 | 1 |
| A10 | 0 | 12 | 0 | 0 |
>TRINITY_DN38585_c0_g1_i2 from sample A8 / Example spliced isoformCATAAAGAAAACCAGCAGCGCAAAACTCGTTCATTGGCAAAATTGGACATGGCCTTCTTGACAACCCAATTCATCATCCGTGGTGATAATGGCCTGTGCCAGTTCCCAAGAACTCCCACAACTCCTTGCAACGATGGTTTCCTGCAACATCTGCCACTCCAAAGGAGAAGGAGAAAAGAAAGGGCCATGGCAAGGGCAGT
ATCGAGCAGTACCCATAACAATAATGAGGCTATTTCTACTCAAGTTCCTTTCACTGAAGGTGAACTGGATCGACCACGCTGGACTGGGGATACGCCAATCTCACGTCTTGTAGCAGGCCTGATTGCGATCAAACCTATCTATAATCTTATGAAGTTGGGTGCCAGACAAGTTCTTATCAGGACAGCGGAGAAAAATGGAA
TTGCGTGGAGAGATATGGCAAGGGAGATTCTCGAATCAGAAGTTTACAAGGAGAAGGAACTCATCGAGAACCCTTCTATTGTCTACCCAGATTATTATTTGAAGCCATTCCATGCTTACGAGCAAGGAAACTTATCTTGGGAGGCATGATGTATAGCAGGCAGCAGCAGAAGTAGAAGCAGCGACCATGTCCATGACGAG
GCGTGCGATTCCATCTGCTGCATCTCTGGAGGATGCAACTCGGGTAGTGAGAGAGAACTGGCTTCAGGAAATTGAAGACCATCACACCAAAAACTCAGGTGGCCTTGGTATAGCTGACATTCTTGATGTGGGTTGCTCTGTTGGAGTCAGCACAAGATTTCTAGCTGATAAATTTCCTCTTGCTAATGTTATTGGGTTGG
ATCTTTCTCCCTACTTCCTCGCAGTAGCTCAATATAAAGAGAAAAGAAGACCTTTAAGAGAGAAACCCATCAAGTGGATTCATGCAAATGGGGAAGCAACTGGTCTTCCTTCTGCATCATTAGACATTGTTTCTTTTTCTTTTGTGACACACGAATGCCCTCAAACTGCAATCAGGAATTTGCTTAAGGAAGCTTTCCGA
GTCCTTAGGCCCGGAGGCACTGTGGCTTTGACAGATAACTCACCTAAATCTAAGATCTTACAGAATCTACCACCGGTGTTATTTACTTTGATGAAAAGTACAGAACCGCATTTGGATGAATATTACTTAATGGACTTGGAGAACACAATGGTGGAAATTGGTTTTATTCATGTCCGGTCTGTCCTTACTGACCCAAGACA
CAGAACAGTAACTGGTTCTGTACCGAAGCTATAACTATCCATCTTTGTTTCTTTATATGGACTTTCCAATTAATGAAAAATATAGTATGTGGGTTAAAGGTACCGATTGTACCTACAATATTGACACTGTTTTCTTATAATCTAGATGACAAATTCATAGCAGTGCAGTTCTTCCTTGCTGTGAGAAGGATGGTTTACAA
TGTGCAAGAATGGGCATATTTGAACCAACAGAAGTTGCTCTTAGACAGACCAGTCTCCCAAGGAGAAAAAGGCTGGCCCTTAGACTAGTTCCCCTACTGATGGATGATAGAAATTATTCTGTAAAAATAATTATTTTTTGTTATTTGAAGAAGAGAACTCGATTCAAGGATTTTCCAAATGATAGCTATTTGCAAGCCGC
TCCTTTCTTGGTCACTTAAAAAAGATAGTCTTCTGAAAAACCTGTCTAATTGGATTCCACACTATATTTTTCAAGGGTTAATCAAGGAAGAATCAGTGTTAGAAAACTTTATTCTCAACTTGAGGTCATCCTGGTTGTTGACATGTATTTATTCTAGGTTCTGATTAATAGATTGAAATATGGAATGGG
>TRINITY_DN38585_c0_g1_i3 from sample A8 / Example unspliced isoform:TGATGTTGATATTGCAGACACACGAATGCCCTCAAACTGCAATCAGGAATTTGCTTAAGGAAGCTTTCCGAGTCCTTAGGCCCGGAGGCACTGTGGCTTTGACAGATAACTCAgtgagtgattctgttacacttccctaaggcatacctgatcatttgttcatgttatatgaagacaagcctgatagattctgattgtat
acattttgttttttgttttgtgatttgttgtgcagCCTAAATCTAAGATCTTACAGGTAAGAGCCTGTCTTTCTTGACAAAAACAGAGTAAATTTCCAC