sp|Q8RY25|NU98A_ARATH ----> Nuclear pore complex protein NUP98A
Intron 1 GTATGTATTG ... TTATGGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.64 | 96 | 0 | 22 |
| A2 | 21.21 | 78 | 4 | 21 |
| A3 | 20.81 | 137 | 8 | 36 |
| A4 | 16.46 | 66 | 3 | 13 |
| A5 | 13.98 | 80 | 0 | 13 |
| A6 | 9.2 | 79 | 0 | 8 |
| A7 | 10.62 | 101 | 0 | 12 |
| A8 | 7.41 | 25 | 0 | 2 |
| A9 | 12.5 | 84 | 0 | 12 |
| A10 | 12.15 | 94 | 0 | 13 |
>TRINITY_DN103650_c0_g1_i5 from sample A3 / Example spliced isoformGTTTATAACTCGCGTTCAAACCACAAGTTAACTGACCCTCAGAAGCCGGGGGTGGGTTTGCGTTTTCTGTATTCCTCTGCCCTTCCTTTTCCTTCTTCTTATGCTGTATAGTTTTCATTGTTTAGAGGCGTTCTCTGCGAATTCCTTGAAGAATCCGACTGCTATCTTTGCGTCCAACGCGCCCATTCTACGTCTCAAAT
CGCAGCAAAGCTTAAATCCCGAGAAAAAGTTGTTGAGATCGGGGTTTTCTAAGGCGTCTTCTGGAGAATTTAAGGATCGAATAATATCGGATTTCACCATGTTTGGATCGAGTAACCCATTTGGGCAACCGAGTTCCAATCCATTTGGAGCACAGCCAGCATTTGGGCAGACCAACACTGCAAATTCTAATCCATTTAGC
CCGAGGCCTTTTGGCAGCACAAGTCTGTTTGGTGCGCAGACTGGCAGTTCAATGTTCGGAGGCACAGCAACGGGCGTTTTTGGAGCCACACAGACTCCCTCGCCATTGGCTTCTTCCACCTCAGCATTTGGCACCTCTTCTCCAGCGTTTGGCGCCTCCTCGACACCAGCTTTTGGTGCAACTTCAACACCTGCATTCGG
TGCTGCGCCATCTACTCCATTTGGTGGAGCATCTACATTTGGACAAAAACCTGCATTTGGAGGATTTGGAACACCAAGTCCTGCTCAATCAAGTCCATTTGGAAGTACTTTTGGTCAGACGCAACCAGCTTTTGGTAGTCAACTTTTTGGTGCAGCCAGTCAGCCTGCTTTCGGTGCAACTACCACACCTGCATTTGGAT
CTACTTCAACACCTGCATTTGGTACCACAACACCTGCATTTGGGTCAACAAGTGCACCTGCCTTTGGAGCTTCCAGTACTCCAGCTTTTGGGGCTTCTAGTACTCCAGCATTTGGGGCTTCAAGCAGTCCTTCCTTTGGTTTTGGAAGCACTAACAATTTTGGTCAATCAGCTCCAGCCTTTGGTGCAGCATCTACTCCA
GCATTTGGGAGCAACCCAACATTTGGAAGCACTCCATCCCCATTTGGTCAGAGCTCAGCTTTTGGAGCTCAGTCAACGACTCCAACATTTGGCAGCCCGGGATTTGGACAGACATCCTTTGGTGGACAACGTGGAGGTAGTAGAGCAGCACCGTACACAACTACAAATGAGTCAGATACCGTAGGTGGTCAGGCACCTGG
GAAACTTATTTCCATATCTGCTATGCCACAATACAAGGACAAAAGTCATGAGGAATTAAGATGGGAGGATTATCAATTGGGAGACAAAGGTGGCCCAAATACTGCAAGTCAACAACCTGCTGCAGGGGGAAGTATATTTTCTCAGCCAGGACAGTCGAATCCCTTTGGTCAAACAACACCTGCCTTTGGTCAAACAACAC
CTGCCTTTGGTCAGACAAATGCCTTTGGTCAAGCATCTGCTCCAAATCCTTTTTCAGCGTCGTCGTCTTCCAGTCCTTTTGGTAATAAACCAGCAGGATTTGGTGGTAGCACATTTGCATCATCATCAGGTTCTGCATTTAATTCACCATTTGGGGCAACCTCCTCATCCTCCCCTTTTGGCACTGCTTCTTCAGCTCCA
TCTCTTTTTGGATCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAACTCCTTTTGGAGCATCAAGCACACCTGCATTTGGTTCATCACCTTTTGGTCAACCATCTCAACCTGCATCTCTTTTTGGTTCAACCCCATCGTTAGGGTCGGCTCCTGCATTTGGATCAAGCACACCTTTTGGAAGTACCCAGTCATC
TGGATTGTTTCAATCTTCCACGTCGGCTTTTGGGCAATCCACACCGGCATTTGGCCAAACCACACCGACGTTTGGCCAATCCACACCAGCGTTTGGCCAATCCACACCAGCGTTTGGACAGTCAACTCCAGCTTTTGGCCAATCCACGCCAGCGTTTGGACAGTCAACACCAGCTTTTGGCCAAAGCACTCCTGCTTTTG
GGAGCAACCTGTTTTCTAGCAGCACATCATCATTGATGTCGCAGAGCAAACCAGCAGGCCTTGTACAAGCAACGGTATGTTCACATTCTCTAATATTTGCCATTGTATGAGCGATACTGAATTGGAGTTTGAAATCTCATTCCTCTAATGAGATGGATGCTCAGGGCATTTTTTTCAGTTTATAGGCACC
>TRINITY_DN103650_c0_g1_i2 from sample A3 / Example unspliced isoform:GCCATCGGATAAACATTCCAGTTTTATTGACAAGCACTGGGTTTTGTGTATCAGGATCGAATAATATCGGATTTCACCATGTTTGGATCGAGTAACCgtatgtattgcatcgcttttaatctgttcaagggcttatttgttgagttagggttattttaggtttaattttgatgatagatttagaagagtagtggggtttg
atatcagtagatttagggcaaacgggcagggttttttattggttttttagtgagggggaatctgttctgtctttctattattgaaaattcatggattggggaattttttatttgggattcaatttaatgcatgtttttcattatttttatgatttgcaattggcgtttttcattgctttgatgatttgcaatcatttctg
cgttggtgtgattgattttaatcgttatgggcagCATTTGGGCAACCGAGTTCCAATCCATTTGGAGCACAGCCAGCATTTGGGCAGACCAACACTGCAAATTCTAATCCATTTAGCCCGAGGCCTTTTGGCAGCACAAGTCTGTTTGGTGCGCAGACTGGCAGTTCAATGTTCGGAGGCACAGCAACGGGCGTTTTTGG
AGCCACACAGACTCCCTCGCCATTGGCTTCTTCCACCTCAGCATTTGGCACCTCTTCTCCAGCGTTTGGCGCCTCCTCGACACCAGCTTTTGGTGCAACTTCAACACCTGCATTCGGTGCTGCGCCATCTACTCCATTTGGTGGAGCATCTACATTTGGACAAAAACCTGCATTTGGAGGATTTGGAACACCAAGTCCTG
CTCAATCAAGTCCATTTGGAAGTACTTTTGGTCAGACGCAACCAGCTTTTGGTAGTCAACTTTTTGGTGCAGCCAGTCAGCCTGCTTTCGGTGCAACTACCACACCTGCATTTGGATCTACTTCAACACCTGCATTTGGTACCACAACACCTGCATTTGGGTCAACAAGTGCACCTGCCTTTGGAGCTTCCAGTACTCCA
GCTTTTGGGGCTTCTAGTACTCCAGCATTTGGGGCTTCAAGCAGTCCTTCCTTTGGTTTTGGAAGCACTAACAATTTTGGTCAATCAGCTCCAGCCTTTGGTGCAGCATCTACTCCAGCATTTGGGAGCAACCCAACATTTGGAAGCACTCCATCCCCATTTGGTCAGAGCTCAGCTTTTGGAGCTCAGTCAACGACTCC
AACATTTGGCAGCCCGGGATTTGGACAGACATCCTTTGGTGGACAACGTGGAGGTAGTAGAGCAGCACCGTACACAACTACAAATGAGTCAGATACCGTAGGTGGTCAGGCACCTGGGAAACTTATTTCCATATCTGCTATGCCACAATACAAGGACAAAAGTCATGAGGAATTAAGATGGGAGGATTATCAATTGGGAG
ACAAAGGTGGCCCAAATACTGCAAGTCAACAACCTGCTGCAGGGGGAAGTATATTTTCTCAGCCAGGACAGTCGAATCCCTTTGGTCAAACAACACCTGCCTTTGGTCAAACAACACCTGCCTTTGGTCAGACAAATGCCTTTGGTCAAGCATCTGCTCCAAATCCTTTTTCAGCGTCGTCGTCTTCCAGTCCTTTTGGT
AATAAACCAGCAGGATTTGGTGGTAGCACATTTGCATCATCATCAGGTTCTGCATTTAATTCACCATTTGGGGCAACCTCCTCATCCTCCCCTTTTGGCACTGCTTCTTCAGCTCCATCTCTTTTTGGATCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAACTCCTTTTGGAGCATCAAGCACACCTGCATT
TGGTTCATCACCTTTTGGTCAACCATCTCAACCTGCATCTCTTTTTGGTTCAACCCCATCGTTAGGGTCGGCTCCTGCATTTGGATCAAGCACACCTTTTGGAAGTACCCAGTCATCTGGATTGTTTCAATCTTCCACGTCGGCTTTTGGGCAATCCACACCGGCATTTGGCCAAACCACACCGACGTTTGGCCAATCCA
CACCAGCGTTTGGCCAATCCACACCAGCGTTTGGACAGTCAACTCCAGCTTTTGGCCAATCCACGCCAGCGTTTGGACAGTCAACACCAGCTTTTGGCCAAAGCACTCCTGCTTTTGGGAGCAACCTGTTTTCTAGCAGCACATCATCATTGATGTCGCAGAGCAAACCAGCAGGCCTTGTACAAGCAACGCCTTCCTTG
TTCAATGGCTTTCAAACATCCAACCCTGCCCAGACACAGGGTGCATTTTCTTTTGGTAATTTTGGCCAGTCGCAGCCAGCTGCTTCTGGTGGTTTTGGTGGCGTATCAACTCCAGCTTTTGGGCAGAGCACCTTTGGGCAACCCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGTAACAAATCCATTTGGAAC
TCTTCCAGCAATGCCTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCTAGTTTGCCTGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACAATCCTAGGAAGGATAGTCCCAAGG
TATCATTTTTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGAAAACCCAAGGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGCTGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAATGGAACAAAGGCAGATGATAAAAAT
GGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTGAGGATACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAATGGTTATATCTCAATTTC
TGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTTCGGCATTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAGGTTATGGTTCTGTGAAGT
TTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGTGTACATGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCATATGGAAGGTGCAGAGGTG
GAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCAAAGGAGAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGGATTAGATGAGATATGATG
TGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAATGGCTTCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCGAATGGTCGTTAGTTGATC
CGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGATATGAAATAATATTTTATTGTGGGTTGTTAACTAGTTATGAGTTGTAAATTCAAATTGTTTTTTGTTCTTTGATAAGGA
Intron 2 GTATGTTAAT ... TTTGTATTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 8 | 8 | 4 |
| A2 | 62.5 | 9 | 15 | 7 |
| A3 | 53.85 | 6 | 7 | 1 |
| A4 | 50 | 8 | 8 | 2 |
| A5 | 66.67 | 5 | 10 | 7 |
| A6 | 48.78 | 21 | 20 | 1 |
| A7 | 51.61 | 15 | 16 | 3 |
| A8 | 54.17 | 11 | 13 | 2 |
| A9 | 51.16 | 21 | 22 | 1 |
| A10 | 54.17 | 11 | 13 | 4 |
>TRINITY_DN44423_c1_g2_i3 from sample A9 / Example spliced isoformGTTTATAACTCGCGTTCAAACCACAAGTTAACTGACCCTCAGAAGCCGGGGGTGGGTTTGCGTTTTCTGTATTCCTCTGCCCTTCCTTTTCCTTCTTCTTATGCTGTATAGTTTTCATTGTTTAGAGGCGTTCTCTGCGAATTCCTTGAAGAATCCGACTGCTATCTTTGCGTCCAACGCGCCCATTCTACGTCTCAAAT
CGCAGCAAAGCTTAAATCCCGAGAAAAAGTTGTTGAGATCGGGGTTTTCTAAGGCGTCTTCTGGAGAATTTAAGGATCGAATAATATCGGATTTCACCATGTTTGGATCGAGTAACCCATTTGGGCAACCGAGTTCCAATCCATTTGGAGCACAGCCAGCATTTGGGCAGACCAACACTGCAAATTCTAATCCATTTAGC
CCGAGGCCTTTTGGCAGCACAAGTCTGTTTGGTGCGCAGACTGGCAGTTCAATGTTCGGAGGCACAGCAACGGGCGTTTTTGGAGCCACACAGACTCCCTCGCCATTGGCTTCTTCCACCTCAGCATTTGGCACCTCTTCTCCAGCGTTTGGCGCCTCCTCGACACCAGCTTTTGGTGCAACTTCAACACCTGCATTCGG
TGCTGCGCCATCTACTCCATTTGGTGGAGCATCTACATTTGGACAAAAACCTGCATTTGGAGGATTTGGAACACCAAGTCCTGCTCAATCAAGTCCATTTGGAAGTACTTTTGGTCAGACGCAACCAGCTTTTGGTAGTCAACTTTTTGGTGCAGCCAGTCAGCCTGCTTTCGGTGCAACTACCACACCTGCATTTGGAT
CTACTTCAACACCTGCATTTGGTACCACAACACCTGCATTTGGGTCAACAAGTGCACCTGCCTTTGGAGCTTCCAGTACTCCAGCTTTTGGGGCTTCTAGTACTCCAGCATTTGGGGCTTCAAGCAGTCCTTCCTTTGGTTTTGGAAGCACTAACAATTTTGGTCAATCAGCTCCAGCCTTTGGTGCAGCATCTACTCCA
GCATTTGGGAGCAACCCAACATTTGGAAGCACTCCATCCCCATTTGGTCAGAGCTCAGCTTTTGGAGCTCAGTCAACGACTCCAACATTTGGCAGCCCGGGATTTGGACAGACATCCTTTGGTGGACAACGTGGAGGTAGTAGAGCAGCACCGTACACAACTACAAATGAGTCAGATACCGTAGGTGGTCAGGCACCTGG
GAAACTTATTTCCATATCTGCTATGCCACAATACAAGGACAAAAGTCATGAGGAATTAAGATGGGAGGATTATCAATTGGGAGACAAAGGTGGCCCAAATACTGCAAGTCAACAACCTGCTGCAGGGGGAAGTATATTTTCTCAGCCAGGACAGTCGAATCCCTTTGGTCAAACAACACCTGCCTTTGGTCAAACAACAC
CTGCCTTTGGTCAGACAAATGCCTTTGGTCAAGCATCTGCTCCAAATCCTTTTTCAGCGTCGTCGTCTTCCAGTCCTTTTGGTAATAAACCAGCAGGATTTGGTGGTAGCACATTTGCATCATCATCAGGTTCTGCATTTAATTCACCATTTGGGGCAACCTCCTCATCCTCCCCTTTTGGCACTGCTTCTTCAGCTCCA
TCTCTTTTTGGATCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAACTCCTTTTGGAGCATCAAGCACACCTGCATTTGGTTCATCACCTTTTGGTCAACCATCTCAACCTGCATCTCTTTTTGGTTCAACCCCATCGTTAGGGTCGGCTCCTGCATTTGGATCAAGCACACCTTTTGGAAGTACCCAGTCATC
TGGATTGTTTCAATCTTCCACGTCGGCTTTTGGGCAATCCACACCGGCATTTGGCCAAACCACACCGACGTTTGGCCAATCCACACCAGCGTTTGGCCAATCCACACCAGCGTTTGGACAGTCAACTCCAGCTTTTGGCCAATCCACGCCAGCGTTTGGACAGTCAACACCAGCTTTTGGCCAAAGCACTCCTGCTTTTG
GGAGCAACCTGTTTTCTAGCAGCACATCATCATTGATGTCGCAGAGCAAACCAGCAGGCCTTGTACAAGCAACGCCTTCCTTGTTCAATGGCTTTCAAACATCCAACCCTGCCCAGACACAGGGTGCATTTTCTTTTGGTAATTTTGGCCAGTCGCAGCCAGGTTACAAGATTTGACATGGGATGTGTATCTTTTCTGCA
CTTCATTAGCTGCTTCTGGTGGTTTTGGTGGCGTATCAACTCCAGCTTTTGGGCAGAGCACCTTTGGGCAACCCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGTAACAAATCCATTTGGAACTCTTCCAGCAATGCCTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCT
AGTTTGCCTGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACAATCCTAGGAAGGATAGTCCCAAGGTATCATTTTTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGA
AAACCCAAGGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGCTGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAATGGAACAAAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTG
GTGAGGATACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAATGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAA
CTTCGGCATTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAGGTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCT
AGTGTACATGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCATATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTG
CCAAAGGAGAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGGATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAG
GAATGGCTTCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCGAATGGTCGTTAGTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGA
TATGAAATAATATTTTATTGTGGGTTG
>TRINITY_DN44423_c1_g2_i2 from sample A9 / Example unspliced isoform:GTTTATAACTCGCGTTCAAACCACAAGTTAACTGACCCTCAGAAGCCGGGGGTGGGTTTGCGTTTTCTGTATTCCTCTGCCCTTCCTTTTCCTTCTTCTTATGCTGTATAGTTTTCATTGTTTAGAGGCGTTCTCTGCGAATTCCTTGAAGAATCCGACTGCTATCTTTGCGTCCAACGCGCCCATTCTACGTCTCAAAT
CGCAGCAAAGCTTAAATCCCGAGAAAAAGTTGTTGAGATCGGGGTTTTCTAAGGCGTCTTCTGGAGAATTTAAGGATCGAATAATATCGGATTTCACCATGTTTGGATCGAGTAACCCATTTGGGCAACCGAGTTCCAATCCATTTGGAGCACAGCCAGCATTTGGGCAGACCAACACTGCAAATTCTAATCCATTTAGC
CCGAGGCCTTTTGGCAGCACAAGTCTGTTTGGTGCGCAGACTGGCAGTTCAATGTTCGGAGGCACAGCAACGGGCGTTTTTGGAGCCACACAGACTCCCTCGCCATTGGCTTCTTCCACCTCAGCATTTGGCACCTCTTCTCCAGCGTTTGGCGCCTCCTCGACACCAGCTTTTGGTGCAACTTCAACACCTGCATTCGG
TGCTGCGCCATCTACTCCATTTGGTGGAGCATCTACATTTGGACAAAAACCTGCATTTGGAGGATTTGGAACACCAAGTCCTGCTCAATCAAGTCCATTTGGAAGTACTTTTGGTCAGACGCAACCAGCTTTTGGTAGTCAACTTTTTGGTGCAGCCAGTCAGCCTGCTTTCGGTGCAACTACCACACCTGCATTTGGAT
CTACTTCAACACCTGCATTTGGTACCACAACACCTGCATTTGGGTCAACAAGTGCACCTGCCTTTGGAGCTTCCAGTACTCCAGCTTTTGGGGCTTCTAGTACTCCAGCATTTGGGGCTTCAAGCAGTCCTTCCTTTGGTTTTGGAAGCACTAACAATTTTGGTCAATCAGCTCCAGCCTTTGGTGCAGCATCTACTCCA
GCATTTGGGAGCAACCCAACATTTGGAAGCACTCCATCCCCATTTGGTCAGAGCTCAGCTTTTGGAGCTCAGTCAACGACTCCAACATTTGGCAGCCCGGGATTTGGACAGACATCCTTTGGTGGACAACGTGGAGGTAGTAGAGCAGCACCGTACACAACTACAAATGAGTCAGATACCGTAGGTGGTCAGGCACCTGG
GAAACTTATTTCCATATCTGCTATGCCACAATACAAGGACAAAAGTCATGAGGAATTAAGATGGGAGGATTATCAATTGGGAGACAAAGGTGGCCCAAATACTGCAAGTCAACAACCTGCTGCAGGGGGAAGTATATTTTCTCAGCCAGGACAGTCGAATCCCTTTGGTCAAACAACACCTGCCTTTGGTCAAACAACAC
CTGCCTTTGGTCAGACAAATGCCTTTGGTCAAGCATCTGCTCCAAATCCTTTTTCAGCGTCGTCGTCTTCCAGTCCTTTTGGTAATAAACCAGCAGGATTTGGTGGTAGCACATTTGCATCATCATCAGGTTCTGCATTTAATTCACCATTTGGGGCAACCTCCTCATCCTCCCCTTTTGGCACTGCTTCTTCAGCTCCA
TCTCTTTTTGGATCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAACTCCTTTTGGAGCATCAAGCACACCTGCATTTGGTTCATCACCTTTTGGTCAACCATCTCAACCTGCATCTCTTTTTGGTTCAACCCCATCGTTAGGGTCGGCTCCTGCATTTGGATCAAGCACACCTTTTGGAAGTACCCAGTCATC
TGGATTGTTTCAATCTTCCACGTCGGCTTTTGGGCAATCCACACCGGCATTTGGCCAAACCACACCGACGTTTGGCCAATCCACACCAGCGTTTGGCCAATCCACACCAGCGTTTGGACAGTCAACTCCAGCTTTTGGCCAATCCACGCCAGCGTTTGGACAGTCAACACCAGCTTTTGGCCAAAGCACTCCTGCTTTTG
GGAGCAACCTGTTTTCTAGCAGCACATCATCATTGATGTCGCAGAGCAAACCAGCAGGCCTTGTACAAGCAACGCCTTCCTTGTTCAATGGCTTTCAAACATCCAACCCTGCCCAGACACAGGGTGCATTTTCTTTTGGTAATTTTGGCCAGTCGCAGCCAGgtatgttaatgatcattattactaactatagatattcc
aattctattagttggatttatctttcactatcaatggaatttgtattagGTTACAAGATTTGACATGGGATGTGTATCTTTTCTGCACTTCATTAGCTGCTTCTGGTGGTTTTGGTGGCGTATCAACTCCAGCTTTTGGGCAGAGCACCTTTGGGCAACCCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGTA
ACAAATCCATTTGGAACTCTTCCAGCAATGCCTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCTAGTTTGCCTGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACAATCCTAG
GAAGGATAGTCCCAAGGTATCATTTTTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGAAAACCCAAGGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGCTGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAATGGAACAA
AGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTGAGGATACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAAT
GGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTTCGGCATTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAGG
TTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGTGTACATGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCATA
TGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCAAAGGAGAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGGA
TTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAATGGCTTCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCGA
ATGGTCGTTAGTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGATATGAAATAATATTTTATTGTGGGTTG
Intron 3 GTTACAAGAT ... TCAACTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 48.39 | 32 | 8 | 30 |
| A2 | 56.25 | 21 | 9 | 27 |
| A3 | 57.78 | 19 | 6 | 26 |
| A4 | 55.32 | 21 | 8 | 26 |
| A5 | 63.16 | 7 | 5 | 12 |
| A6 | 52.34 | 61 | 21 | 67 |
| A7 | 56.19 | 46 | 15 | 59 |
| A8 | 52 | 36 | 11 | 39 |
| A9 | 47.11 | 64 | 21 | 57 |
| A10 | 54.31 | 53 | 11 | 63 |
>TRINITY_DN44423_c1_g2_i1 from sample A9 / Example spliced isoformGTTTATAACTCGCGTTCAAACCACAAGTTAACTGACCCTCAGAAGCCGGGGGTGGGTTTGCGTTTTCTGTATTCCTCTGCCCTTCCTTTTCCTTCTTCTTATGCTGTATAGTTTTCATTGTTTAGAGGCGTTCTCTGCGAATTCCTTGAAGAATCCGACTGCTATCTTTGCGTCCAACGCGCCCATTCTACGTCTCAAAT
CGCAGCAAAGCTTAAATCCCGAGAAAAAGTTGTTGAGATCGGGGTTTTCTAAGGCGTCTTCTGGAGAATTTAAGGATCGAATAATATCGGATTTCACCATGTTTGGATCGAGTAACCCATTTGGGCAACCGAGTTCCAATCCATTTGGAGCACAGCCAGCATTTGGGCAGACCAACACTGCAAATTCTAATCCATTTAGC
CCGAGGCCTTTTGGCAGCACAAGTCTGTTTGGTGCGCAGACTGGCAGTTCAATGTTCGGAGGCACAGCAACGGGCGTTTTTGGAGCCACACAGACTCCCTCGCCATTGGCTTCTTCCACCTCAGCATTTGGCACCTCTTCTCCAGCGTTTGGCGCCTCCTCGACACCAGCTTTTGGTGCAACTTCAACACCTGCATTCGG
TGCTGCGCCATCTACTCCATTTGGTGGAGCATCTACATTTGGACAAAAACCTGCATTTGGAGGATTTGGAACACCAAGTCCTGCTCAATCAAGTCCATTTGGAAGTACTTTTGGTCAGACGCAACCAGCTTTTGGTAGTCAACTTTTTGGTGCAGCCAGTCAGCCTGCTTTCGGTGCAACTACCACACCTGCATTTGGAT
CTACTTCAACACCTGCATTTGGTACCACAACACCTGCATTTGGGTCAACAAGTGCACCTGCCTTTGGAGCTTCCAGTACTCCAGCTTTTGGGGCTTCTAGTACTCCAGCATTTGGGGCTTCAAGCAGTCCTTCCTTTGGTTTTGGAAGCACTAACAATTTTGGTCAATCAGCTCCAGCCTTTGGTGCAGCATCTACTCCA
GCATTTGGGAGCAACCCAACATTTGGAAGCACTCCATCCCCATTTGGTCAGAGCTCAGCTTTTGGAGCTCAGTCAACGACTCCAACATTTGGCAGCCCGGGATTTGGACAGACATCCTTTGGTGGACAACGTGGAGGTAGTAGAGCAGCACCGTACACAACTACAAATGAGTCAGATACCGTAGGTGGTCAGGCACCTGG
GAAACTTATTTCCATATCTGCTATGCCACAATACAAGGACAAAAGTCATGAGGAATTAAGATGGGAGGATTATCAATTGGGAGACAAAGGTGGCCCAAATACTGCAAGTCAACAACCTGCTGCAGGGGGAAGTATATTTTCTCAGCCAGGACAGTCGAATCCCTTTGGTCAAACAACACCTGCCTTTGGTCAAACAACAC
CTGCCTTTGGTCAGACAAATGCCTTTGGTCAAGCATCTGCTCCAAATCCTTTTTCAGCGTCGTCGTCTTCCAGTCCTTTTGGTAATAAACCAGCAGGATTTGGTGGTAGCACATTTGCATCATCATCAGGTTCTGCATTTAATTCACCATTTGGGGCAACCTCCTCATCCTCCCCTTTTGGCACTGCTTCTTCAGCTCCA
TCTCTTTTTGGATCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAACTCCTTTTGGAGCATCAAGCACACCTGCATTTGGTTCATCACCTTTTGGTCAACCATCTCAACCTGCATCTCTTTTTGGTTCAACCCCATCGTTAGGGTCGGCTCCTGCATTTGGATCAAGCACACCTTTTGGAAGTACCCAGTCATC
TGGATTGTTTCAATCTTCCACGTCGGCTTTTGGGCAATCCACACCGGCATTTGGCCAAACCACACCGACGTTTGGCCAATCCACACCAGCGTTTGGCCAATCCACACCAGCGTTTGGACAGTCAACTCCAGCTTTTGGCCAATCCACGCCAGCGTTTGGACAGTCAACACCAGCTTTTGGCCAAAGCACTCCTGCTTTTG
GGAGCAACCTGTTTTCTAGCAGCACATCATCATTGATGTCGCAGAGCAAACCAGCAGGCCTTGTACAAGCAACGCCTTCCTTGTTCAATGGCTTTCAAACATCCAACCCTGCCCAGACACAGGGTGCATTTTCTTTTGGTAATTTTGGCCAGTCGCAGCCAGCTTTTGGGCAGAGCACCTTTGGGCAACCCACTCAGCAG
AATATAATGGTTACAACACCTCAACCTGTAACAAATCCATTTGGAACTCTTCCAGCAATGCCTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCTAGTTTGCCTGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTCACTCAAAGGTCAAGGAT
CCGCATGCATTCACGTAGATACAATCCTAGGAAGGATAGTCCCAAGGTATCATTTTTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGAAAACCCAAGGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGCTGCATGCAAACCAACAGCAAACATGAAGGAAA
TGGCCATACCTATTAATGATAATGGAACAAAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTGAGGATACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGT
CTTCATGAGGAGCATAATCACAGAGGAAATGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTTCGGCATTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCG
GGTTAAAGACTTTGTGGTTGGTAGGAGAGGTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGTGTACATGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAAT
GTGTTGACAAGAAGACAGGTCAACACCATATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCAAAGGAGAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTA
CGTATTCACAATCTTCTCATATCTGAAGGATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAATGGCTTCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGT
GCTGTTTACGCTGCTCGTTTGTTTGATCGAATGGTCGTTAGTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGATATGAAATAATATTTTATTGTGGGTTG
>TRINITY_DN44423_c1_g2_i3 from sample A9 / Example unspliced isoform:GTTTATAACTCGCGTTCAAACCACAAGTTAACTGACCCTCAGAAGCCGGGGGTGGGTTTGCGTTTTCTGTATTCCTCTGCCCTTCCTTTTCCTTCTTCTTATGCTGTATAGTTTTCATTGTTTAGAGGCGTTCTCTGCGAATTCCTTGAAGAATCCGACTGCTATCTTTGCGTCCAACGCGCCCATTCTACGTCTCAAAT
CGCAGCAAAGCTTAAATCCCGAGAAAAAGTTGTTGAGATCGGGGTTTTCTAAGGCGTCTTCTGGAGAATTTAAGGATCGAATAATATCGGATTTCACCATGTTTGGATCGAGTAACCCATTTGGGCAACCGAGTTCCAATCCATTTGGAGCACAGCCAGCATTTGGGCAGACCAACACTGCAAATTCTAATCCATTTAGC
CCGAGGCCTTTTGGCAGCACAAGTCTGTTTGGTGCGCAGACTGGCAGTTCAATGTTCGGAGGCACAGCAACGGGCGTTTTTGGAGCCACACAGACTCCCTCGCCATTGGCTTCTTCCACCTCAGCATTTGGCACCTCTTCTCCAGCGTTTGGCGCCTCCTCGACACCAGCTTTTGGTGCAACTTCAACACCTGCATTCGG
TGCTGCGCCATCTACTCCATTTGGTGGAGCATCTACATTTGGACAAAAACCTGCATTTGGAGGATTTGGAACACCAAGTCCTGCTCAATCAAGTCCATTTGGAAGTACTTTTGGTCAGACGCAACCAGCTTTTGGTAGTCAACTTTTTGGTGCAGCCAGTCAGCCTGCTTTCGGTGCAACTACCACACCTGCATTTGGAT
CTACTTCAACACCTGCATTTGGTACCACAACACCTGCATTTGGGTCAACAAGTGCACCTGCCTTTGGAGCTTCCAGTACTCCAGCTTTTGGGGCTTCTAGTACTCCAGCATTTGGGGCTTCAAGCAGTCCTTCCTTTGGTTTTGGAAGCACTAACAATTTTGGTCAATCAGCTCCAGCCTTTGGTGCAGCATCTACTCCA
GCATTTGGGAGCAACCCAACATTTGGAAGCACTCCATCCCCATTTGGTCAGAGCTCAGCTTTTGGAGCTCAGTCAACGACTCCAACATTTGGCAGCCCGGGATTTGGACAGACATCCTTTGGTGGACAACGTGGAGGTAGTAGAGCAGCACCGTACACAACTACAAATGAGTCAGATACCGTAGGTGGTCAGGCACCTGG
GAAACTTATTTCCATATCTGCTATGCCACAATACAAGGACAAAAGTCATGAGGAATTAAGATGGGAGGATTATCAATTGGGAGACAAAGGTGGCCCAAATACTGCAAGTCAACAACCTGCTGCAGGGGGAAGTATATTTTCTCAGCCAGGACAGTCGAATCCCTTTGGTCAAACAACACCTGCCTTTGGTCAAACAACAC
CTGCCTTTGGTCAGACAAATGCCTTTGGTCAAGCATCTGCTCCAAATCCTTTTTCAGCGTCGTCGTCTTCCAGTCCTTTTGGTAATAAACCAGCAGGATTTGGTGGTAGCACATTTGCATCATCATCAGGTTCTGCATTTAATTCACCATTTGGGGCAACCTCCTCATCCTCCCCTTTTGGCACTGCTTCTTCAGCTCCA
TCTCTTTTTGGATCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAACTCCTTTTGGAGCATCAAGCACACCTGCATTTGGTTCATCACCTTTTGGTCAACCATCTCAACCTGCATCTCTTTTTGGTTCAACCCCATCGTTAGGGTCGGCTCCTGCATTTGGATCAAGCACACCTTTTGGAAGTACCCAGTCATC
TGGATTGTTTCAATCTTCCACGTCGGCTTTTGGGCAATCCACACCGGCATTTGGCCAAACCACACCGACGTTTGGCCAATCCACACCAGCGTTTGGCCAATCCACACCAGCGTTTGGACAGTCAACTCCAGCTTTTGGCCAATCCACGCCAGCGTTTGGACAGTCAACACCAGCTTTTGGCCAAAGCACTCCTGCTTTTG
GGAGCAACCTGTTTTCTAGCAGCACATCATCATTGATGTCGCAGAGCAAACCAGCAGGCCTTGTACAAGCAACGCCTTCCTTGTTCAATGGCTTTCAAACATCCAACCCTGCCCAGACACAGGGTGCATTTTCTTTTGGTAATTTTGGCCAGTCGCAGCCAGgttacaagatttgacatgggatgtgtatcttttctgca
cttcattagctgcttctggtggttttggtggcgtatcaactccagCTTTTGGGCAGAGCACCTTTGGGCAACCCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGTAACAAATCCATTTGGAACTCTTCCAGCAATGCCTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCT
AGTTTGCCTGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACAATCCTAGGAAGGATAGTCCCAAGGTATCATTTTTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGA
AAACCCAAGGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGCTGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAATGGAACAAAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTG
GTGAGGATACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAATGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAA
CTTCGGCATTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAGGTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCT
AGTGTACATGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCATATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTG
CCAAAGGAGAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGGATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAG
GAATGGCTTCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCGAATGGTCGTTAGTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGA
TATGAAATAATATTTTATTGTGGGTTG
Intron 4 GTGAGAACTA ... CTTGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.45 | 70 | 18.5 | 18 |
| A2 | 21.88 | 50 | 7.5 | 14 |
| A3 | 29.63 | 76 | 13 | 32 |
| A4 | 24.19 | 47 | 3 | 15 |
| A5 | 24.49 | 37 | 6 | 12 |
| A6 | 17.52 | 113 | 8.5 | 24 |
| A7 | 23.35 | 128 | 17 | 39 |
| A8 | 24.39 | 93 | 11.5 | 30 |
| A9 | 23.39 | 131 | 14 | 40 |
| A10 | 22.22 | 112 | 12 | 32 |
>TRINITY_DN120106_c1_g2_i4 from sample A1 / Example spliced isoformGCGGGGGCATTTTTTTCAGTTTATAGGCATCCCTGAATTGCAGTTTGAAATCTCATCTCTCTAATGAGATAGATGCTCAGGGCATTTTTTTCAGTTTATTAGGCATTCTGGAATGTGTGTTTATTTCTGTGTTAATCCTATATAGCAATTCTTTGTTATGTGATGTATTTGGACCTTGTGTTTTAATATTTGATTGGTAT
GAACTGCAGCCTTCCTTGTTCAATGGCTTTCAAACATCCAACCCTGCCCAGACACAGGGTGCATTTTCTTTTGGTAATTTTGGCCAGTCGCAGCCAGCTGCTTCTGGTGGTTTTGGTGGCGTATCAACTCCAGCTTTTGGGCAGAGCACCTTTGGGCAACCCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGT
AACAAATCCATTTGGAACTCTTCCAGCAATGCCTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCTAGTTTGCCTGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACAATCCTA
GGAAGGATAGTCCCAAGGTATCATTTTTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGAAAACCCAAGGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGCTGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAATGGAACA
AAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTGAGGATACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAA
TGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTTCGGCATTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAG
GTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGTGTACATGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCAT
ATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCAAAGGAGAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGG
ATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAATGGCTTCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCG
AATGGTCGTTACTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGATATGAAATAATATTTTATTGTGGGTTGTTAACTAAAAAAA
>TRINITY_DN120106_c1_g2_i1 from sample A1 / Example unspliced isoform:GCCAGTCGCAGCCAGGTATGTTAATGATCATTATTACTAACTATAGATATTCCAATTCTATTAGTTGGATTTATCTTTCACTATCAATGGAATTTGTATTAGGTTACAAGATTTGACATGGGATGTGTATCTTTTCTGCACTTCATTAGCTGCTTCTGGTGGTTTTGGTGGCGTATCAACTCCAGCTTTTGGGCAGAGCA
CCTTTGGGCAACCgtgagaactacaattatttccttgcttctctttcttatgaatatgagattcatgtcattagtgccgtttgctcttctaacagagcacctccttcctcttgttgcagCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGTAACAAATCCATTTGGAACTCTTCCAGCAATGCCTCAGATGTC
TATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCTAGTTTGCCTGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACAATCCTAGGAAGGATAGTCCCAAGGTATCATTTTTCAGCGATAGTGAAG
AAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGAAAACCCAAGGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGCTGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAATGGAACAAAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCA
TTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTGAGGATACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAATGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGC
TATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTTCGGCATTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAGGTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGC
GTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGTGTACATGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCATATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAG
AGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCAAAGGAGAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGGATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACT
ATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAATGGCTTCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCGAATGGTCGTTACTTGATCCGTTATTTGCTATGTAAGACCCAT
GGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGATATGAAATAATATTTTATTGTGGGTTGTTAACTAAAAAAA
Intron 5 GTGAGTGTGG ... ATGTGGGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.49 | 163 | 44 | 40 |
| A2 | 13.73 | 132 | 14 | 28 |
| A3 | 17.39 | 114 | 23 | 25 |
| A4 | 25 | 105 | 35 | 35 |
| A5 | 17.57 | 61 | 9 | 17 |
| A6 | 18.45 | 316 | 59 | 84 |
| A7 | 19.67 | 337 | 58 | 107 |
| A8 | 20.59 | 214 | 41 | 70 |
| A9 | 20.9 | 246 | 55 | 75 |
| A10 | 18.52 | 231 | 49 | 56 |
>TRINITY_DN99437_c0_g1_i2 from sample A4 / Example spliced isoformCACCATGTTTGGATCGAGTAACCGTATGTATTGCATCGCTTTTAATCTGTTCAAGGGCTTATTTGTTGAGTTAGGGTTATTTTAGGTTTAATTTTGATGATAGATTTAGAAGAGTAGTGGGGTTTGATATCAGTAGATTTAGGGCAAACGGGCAGGGTTTTTTTATTGGTTTTTTAGTGAGGGGGAATCTGTTCTGTCTT
TCTATTATTGAAAATTCATGGATTGGGGAATTTTTTATTTGGGATTCAATTTAATGCATGTTTTTCATTATTTTTATGATTTGCAATTGGCGTTTTTCATTGCTTTGATGATTTGCAATCATTTCTGCGTTGGTGTGATTGATTTTAATCGTTATGGGCAGCATTTGGGCAACCGAGTTCCAATCCATTTGGAGCACAGC
CAGCATTTGGGCAGACCAACACTGCAAATTCTAATCCATTTAGCCCGAGGCCTTTTGGCAGCACAAGTCTGTTTGGTGCGCAGACTGGCAGTTCAATGTTCGGAGGCACAGCAACGGGCGTTTTTGGAGCCACACAGACTCCCTCGCCATTGGCTTCTTCCACCTCAGCATTTGGCACCTCTTCTCCAGCGTTTGGCGCC
TCCTCGACACCAGCTTTTGGTGCAACTTCAACACCTGCATTCGGTGCTGCGCCATCTACTCCATTTGGTGGAGCATCTACATTTGGACAAAAACCTGCATTTGGAGGATTTGGAACACCAAGTCCTGCTCAATCAAGTCCATTTGGAAGTACTTTTGGTCAGACGCAACCAGCTTTTGGTAGTCAACTTTTTGGTGCAGC
CAGTCAGCCTGCTTTCGGTGCAACTACCACACCTGCATTTGGATCTACTTCAACACCTGCATTTGGTACCACAACACCTGCATTTGGGTCAACAAGTGCACCTGCCTTTGGAGCTTCCAGTACTCCAGCTTTTGGGGCTTCTAGTACTCCAGCATTTGGGGCTTCAAGCAGTCCTTCCTTTGGTTTTGGAAGCACTAACA
ATTTTGGTCAATCAGCTCCAGCCTTTGGTGCAGCATCTACTCCAGCATTTGGGAGCAACCCAACATTTGGAAGCACTCCATCCCCATTTGGTCAGAGCTCAGCTTTTGGAGCTCAGTCAACGACTCCAACATTTGGCAGCCCGGGATTTGGACAGACATCCTTTGGTGGACAACGTGGAGGTAGTAGAGCAGCACCGTAC
ACAACTACAAATGAGTCAGATACCGTAGGTGGTCAGGCACCTGGGAAACTTATTTCCATATCTGCTATGCCACAATACAAGGACAAAAGTCATGAGGAATTAAGATGGGAGGATTATCAATTGGGAGACAAAGGTGGCCCAAATACTGCAAGTCAACAACCTGCTGCAGGGGGAAGTATATTTTCTCAGCCAGGACAGTC
GAATCCCTTTGGTCAAACAACACCTGCCTTTGGTCAAACAACACCTGCCTTTGGTCAGACAAATGCCTTTGGTCAAGCATCTGCTCCAAATCCTTTTTCAGCGTCGTCGTCTTCCAGTCCTTTTGGTAATAAACCAGCAGGATTTGGTGGTAGCACATTTGCATCATCATCAGGTTCTGCATTTAATTCACCATTTGGGG
CAACCTCCTCATCCTCCCCTTTTGGCACTGCTTCTTCAGCTCCATCTCTTTTTGGATCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAACTCCTTTTGGAGCATCAAGCACACCTGCATTTGGTTCATCACCTTTTGGTCAACCATCTCAACCTGCATCTCTTTTTGGTTCAACCCCATCGTTAGGGTCGGCT
CCTGCATTTGGATCAAGCACACCTTTTGGAAGTACCCAGTCATCTGGATTGTTTCAATCTTCCACGTCGGCTTTTGGGCAATCCACACCGGCATTTGGCCAAACCACACCGACGTTTGGCCAATCCACACCAGCGTTTGGCCAATCCACACCAGCGTTTGGACAGTCAACTCCAGCTTTTGGCCAATCCACGCCAGCGTT
TGGACAGTCAACACCAGCTTTTGGCCAAAGCACTCCTGCTTTTGGGAGCAACCTGTTTTCTAGCAGCACATCATCATTGATGTCGCAGAGCAAACCAGCAGGCCTTGTACAAGCAACGCCTTCCTTGTTCAATGGCTTTCAAACAACCAACCCTGCCCAGACACAGGGTGCATTTTCTTTTGGTAATTTTGGCCAGTCGC
AGCCAGCTGCTTCTGGTGGTTTTGGTGGCGTATCAACTCCAGCTTTTGGGCAGAGCACCTTTGGGCAACCCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGTAACAAATCCATTTGGAACTCTTCCAGCAATGCCTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCTAGT
TTGCCTGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACAATCCTAGGAAGGATAGTCCCAAGGTATCATTTTTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGAAAA
CCCAAGGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGCTGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAATGGAACAAAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTG
AGGATACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAATGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTT
CGGCATTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAGGTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGT
GTACATGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCATATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCA
AAGGAGAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGGATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAA
TGGCTTCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCGAATGGTCGTTAGTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAA
>TRINITY_DN99437_c0_g1_i4 from sample A4 / Example unspliced isoform:CTCGCGTTCAAACCACAAGTTAACTGACCCTCAGAAGCCGGGGGTGGGTTTGCGTTTTCTGTATTCCTCTGCCCTTCCTTTTCCTTCTTCTTATGCTGTATAGTTTTCATTGTTTAGAGGCGTTCTCTGCGAATTCCTTGAAGAATCCGACTGCTATCTTTGCGTCCAACGCGCCCATTCTACGTCTCAAATCGCAGCAA
AGCTTAAATCCCGAGAAAAAGTTGTTGAGATCGGGGTTTTCTAAGGCGTCTTCTGGAGAATTTAAGGATCGAATAATATCGGATTTCACCATGTTTGGATCGAGTAACCCATTTGGGCAACCGAGTTCCAATCCATTTGGAGCACAGCCAGCATTTGGGCAGACCAACACTGCAAATTCTAATCCATTTAGCCCGAGGCC
TTTTGGCAGCACAAGTCTGTTTGGTGCGCAGACTGGCAGTTCAATGTTCGGAGGCACAGCAACGGGCGTTTTTGGAGCCACACAGACTCCCTCGCCATTGGCTTCTTCCACCTCAGCATTTGGCACCTCTTCTCCAGCGTTTGGCGCCTCCTCGACACCAGCTTTTGGTGCAACTTCAACACCTGCATTCGGTGCTGCGC
CATCTACTCCATTTGGTGGAGCATCTACATTTGGACAAAAACCTGCATTTGGAGGATTTGGAACACCAAGTCCTGCTCAATCAAGTCCATTTGGAAGTACTTTTGGTCAGACGCAACCAGCTTTTGGTAGTCAACTTTTTGGTGCAGCCAGTCAGCCTGCTTTCGGTGCAACTACCACACCTGCATTTGGATCTACTTCA
ACACCTGCATTTGGTACCACAACACCTGCATTTGGGTCAACAAGTGCACCTGCCTTTGGAGCTTCCAGTACTCCAGCTTTTGGGGCTTCTAGTACTCCAGCATTTGGGGCTTCAAGCAGTCCTTCCTTTGGTTTTGGAAGCACTAACAATTTTGGTCAATCAGCTCCAGCCTTTGGTGCAGCATCTACTCCAGCATTTGG
GAGCAACCCAACATTTGGAAGCACTCCATCCCCATTTGGTCAGAGCTCAGCTTTTGGAGCTCAGTCAACGACTCCAACATTTGGCAGCCCGGGATTTGGACAGACATCCTTTGGTGGACAACGTGGAGGTAGTAGAGCAGCACCGTACACAACTACAAATGAGTCAGATACCGTAGGTGGTCAGGCACCTGGGAAACTTA
TTTCCATATCTGCTATGCCACAATACAAGGACAAAAGTCATGAGGAATTAAGATGGGAGGATTATCAATTGGGAGACAAAGGTGGCCCAAATACTGCAAGTCAACAACCTGCTGCAGGGGGAAGTATATTTTCTCAGCCAGGACAGTCGAATCCCTTTGGTCAAACAACACCTGCCTTTGGTCAAACAACACCTGCCTTT
GGTCAGACAAATGCCTTTGGTCAAGCATCTGCTCCAAATCCTTTTTCAGCGTCGTCGTCTTCCAGTCCTTTTGGTAATAAACCAGCAGGATTTGGTGGTAGCACATTTGCATCATCATCAGGTTCTGCATTTAATTCACCATTTGGGGCAACCTCCTCATCCTCCCCTTTTGGCACTGCTTCTTCAGCTCCATCTCTTTT
TGGATCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAACTCCTTTTGGAGCATCAAGCACACCTGCATTTGGTTCATCACCTTTTGGTCAACCATCTCAACCTGCATCTCTTTTTGGTTCAACCCCATCGTTAGGGTCGGCTCCTGCATTTGGATCAAGCACACCTTTTGGAAGTACCCAGTCATCTGGATTGT
TTCAATCTTCCACGTCGGCTTTTGGGCAATCCACACCGGCATTTGGCCAAACCACACCGACGTTTGGCCAATCCACACCAGCGTTTGGCCAATCCACACCAGCGTTTGGACAGTCAACTCCAGCTTTTGGCCAATCCACGCCAGCGTTTGGACAGTCAACACCAGCTTTTGGCCAAAGCACTCCTGCTTTTGGGAGCAAC
CTGTTTTCTAGCAGCACATCATCATTGATGTCGCAGAGCAAACCAGCAGGCCTTGTACAAGCAACGCCTTCCTTGTTCAATGGCTTTCAAACAACCAACCCTGCCCAGACACAGGGTGCATTTTCTTTTGGTAATTTTGGCCAGTCGCAGCCAGCTGCTTCTGGTGGTTTTGGTGGCGTATCAACTCCAGCTTTTGGGCA
GAGCACCTTTGGGCAACCCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGTAACAAATCCATTTGGAACTCTTCCAGCAATGCCTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCTAGTTTGCCTgtgagtgtggaatcaatgttttaactattcttcagatatgtaatag
atatagtttttaaaataaagttgctttatacatagagtaatattaacatatgttgtgattcaattaattttggttgctgattttgataaactgatgtgggtagGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACA
ATCCTAGGAAGGATAGTCCCAAGGTATCATTTTTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGAAAACCCAAGGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGCTGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAAT
GGAACAAAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTGAGGATACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAG
AGGAAATGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTTCGGCATTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTA
GGAGAGGTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGTGTACATGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAA
CACCATATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCAAAGGAGAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATC
TGAAGGATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAATGGCTTCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTT
TGATCGAATGGTCGTTAGTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAA
Intron 6 GTATGTATTG ... TTATGGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.64 | 96 | 0 | 22 |
| A2 | 21.21 | 78 | 1 | 21 |
| A3 | 20.81 | 137 | 1 | 36 |
| A4 | 16.46 | 66 | 3 | 13 |
| A5 | 13.98 | 80 | 0 | 13 |
| A6 | 9.2 | 79 | 0 | 8 |
| A7 | 10.62 | 101 | 0 | 12 |
| A8 | 7.41 | 25 | 0 | 2 |
| A9 | 12.5 | 84 | 0 | 12 |
| A10 | 12.15 | 94 | 0 | 13 |
>TRINITY_DN99437_c0_g1_i6 from sample A4 / Example spliced isoformCTCGCGTTCAAACCACAAGTTAACTGACCCTCAGAAGCCGGGGGTGGGTTTGCGTTTTCTGTATTCCTCTGCCCTTCCTTTTCCTTCTTCTTATGCTGTATAGTTTTCATTGTTTAGAGGCGTTCTCTGCGAATTCCTTGAAGAATCCGACTGCTATCTTTGCGTCCAACGCGCCCATTCTACGTCTCAAATCGCAGCAA
AGCTTAAATCCCGAGAAAAAGTTGTTGAGATCGGGGTTTTCTAAGGCGTCTTCTGGAGAATTTAAGGATCGAATAATATCGGATTTCACCATGTTTGGATCGAGTAACCCATTTGGGCAACCGAGTTCCAATCCATTTGGAGCACAGCCAGCATTTGGGCAGACCAACACTGCAAATTCTAATCCATTTAGCCCGAGGCC
TTTTGGCAGCACAAGTCTGTTTGGTGCGCAGACTGGCAGTTCAATGTTCGGAGGCACAGCAACGGGCGTTTTTGGAGCCACACAGACTCCCTCGCCATTGGCTTCTTCCACCTCAGCATTTGGCACCTCTTCTCCAGCGTTTGGCGCCTCCTCGACACCAGCTTTTGGTGCAACTTCAACACCTGCATTCGGTGCTGCGC
CATCTACTCCATTTGGTGGAGCATCTACATTTGGACAAAAACCTGCATTTGGAGGATTTGGAACACCAAGTCCTGCTCAATCAAGTCCATTTGGAAGTACTTTTGGTCAGACGCAACCAGCTTTTGGTAGTCAACTTTTTGGTGCAGCCAGTCAGCCTGCTTTCGGTGCAACTACCACACCTGCATTTGGATCTACTTCA
ACACCTGCATTTGGTACCACAACACCTGCATTTGGGTCAACAAGTGCACCTGCCTTTGGAGCTTCCAGTACTCCAGCTTTTGGGGCTTCTAGTACTCCAGCATTTGGGGCTTCAAGCAGTCCTTCCTTTGGTTTTGGAAGCACTAACAATTTTGGTCAATCAGCTCCAGCCTTTGGTGCAGCATCTACTCCAGCATTTGG
GAGCAACCCAACATTTGGAAGCACTCCATCCCCATTTGGTCAGAGCTCAGCTTTTGGAGCTCAGTCAACGACTCCAACATTTGGCAGCCCGGGATTTGGACAGACATCCTTTGGTGGACAACGTGGAGGTAGTAGAGCAGCACCGTACACAACTACAAATGAGTCAGATACCGTAGGTGGTCAGGCACCTGGGAAACTTA
TTTCCATATCTGCTATGCCACAATACAAGGACAAAAGTCATGAGGAATTAAGATGGGAGGATTATCAATTGGGAGACAAAGGTGGCCCAAATACTGCAAGTCAACAACCTGCTGCAGGGGGAAGTATATTTTCTCAGCCAGGACAGTCGAATCCCTTTGGTCAAACAACACCTGCCTTTGGTCAAACAACACCTGCCTTT
GGTCAGACAAATGCCTTTGGTCAAGCATCTGCTCCAAATCCTTTTTCAGCGTCGTCGTCTTCCAGTCCTTTTGGTAATAAACCAGCAGGATTTGGTGGTAGCACATTTGCATCATCATCAGGTTCTGCATTTAATTCACCATTTGGGGCAACCTCCTCATCCTCCCCTTTTGGCACTGCTTCTTCAGCTCCATCTCTTTT
TGGATCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAACTCCTTTTGGAGCATCAAGCACACCTGCATTTGGTTCATCACCTTTTGGTCAACCATCTCAACCTGCATCTCTTTTTGGTTCAACCCCATCGTTAGGGTCGGCTCCTGCATTTGGATCAAGCACACCTTTTGGAAGTACCCAGTCATCTGGATTGT
TTCAATCTTCCACGTCGGCTTTTGGGCAATCCACACCGGCATTTGGCCAAACCACACCGACGTTTGGCCAATCCACACCAGCGTTTGGCCAATCCACACCAGCGTTTGGACAGTCAACTCCAGCTTTTGGCCAATCCACGCCAGCGTTTGGACAGTCAACACCAGCTTTTGGCCAAAGCACTCCTGCTTTTGGGAGCAAC
CTGTTTTCTAGCAGCACATCATCATTGATGTCGCAGAGCAAACCAGCAGGCCTTGTACAAGCAACGGTATGTTCACATTCTCTAATATTTGCCATTGTATGAGCGATACTGAATTGGAGTTTGAAATCTCATTCCTCTAATGAGATGGATGCTCAGGGCATTTTTTTCAGTTTATTAGGCATTCTGGAATGTGTGTTTAT
TTCTGTGTTAATCCTATATAGCAATTCTTTGTTATGTGATGTATTTG
>TRINITY_DN99437_c0_g1_i2 from sample A4 / Example unspliced isoform:CACCATGTTTGGATCGAGTAACCgtatgtattgcatcgcttttaatctgttcaagggcttatttgttgagttagggttattttaggtttaattttgatgatagatttagaagagtagtggggtttgatatcagtagatttagggcaaacgggcagggtttttttattggttttttagtgagggggaatctgttctgtctt
tctattattgaaaattcatggattggggaattttttatttgggattcaatttaatgcatgtttttcattatttttatgatttgcaattggcgtttttcattgctttgatgatttgcaatcatttctgcgttggtgtgattgattttaatcgttatgggcagCATTTGGGCAACCGAGTTCCAATCCATTTGGAGCACAGC
CAGCATTTGGGCAGACCAACACTGCAAATTCTAATCCATTTAGCCCGAGGCCTTTTGGCAGCACAAGTCTGTTTGGTGCGCAGACTGGCAGTTCAATGTTCGGAGGCACAGCAACGGGCGTTTTTGGAGCCACACAGACTCCCTCGCCATTGGCTTCTTCCACCTCAGCATTTGGCACCTCTTCTCCAGCGTTTGGCGCC
TCCTCGACACCAGCTTTTGGTGCAACTTCAACACCTGCATTCGGTGCTGCGCCATCTACTCCATTTGGTGGAGCATCTACATTTGGACAAAAACCTGCATTTGGAGGATTTGGAACACCAAGTCCTGCTCAATCAAGTCCATTTGGAAGTACTTTTGGTCAGACGCAACCAGCTTTTGGTAGTCAACTTTTTGGTGCAGC
CAGTCAGCCTGCTTTCGGTGCAACTACCACACCTGCATTTGGATCTACTTCAACACCTGCATTTGGTACCACAACACCTGCATTTGGGTCAACAAGTGCACCTGCCTTTGGAGCTTCCAGTACTCCAGCTTTTGGGGCTTCTAGTACTCCAGCATTTGGGGCTTCAAGCAGTCCTTCCTTTGGTTTTGGAAGCACTAACA
ATTTTGGTCAATCAGCTCCAGCCTTTGGTGCAGCATCTACTCCAGCATTTGGGAGCAACCCAACATTTGGAAGCACTCCATCCCCATTTGGTCAGAGCTCAGCTTTTGGAGCTCAGTCAACGACTCCAACATTTGGCAGCCCGGGATTTGGACAGACATCCTTTGGTGGACAACGTGGAGGTAGTAGAGCAGCACCGTAC
ACAACTACAAATGAGTCAGATACCGTAGGTGGTCAGGCACCTGGGAAACTTATTTCCATATCTGCTATGCCACAATACAAGGACAAAAGTCATGAGGAATTAAGATGGGAGGATTATCAATTGGGAGACAAAGGTGGCCCAAATACTGCAAGTCAACAACCTGCTGCAGGGGGAAGTATATTTTCTCAGCCAGGACAGTC
GAATCCCTTTGGTCAAACAACACCTGCCTTTGGTCAAACAACACCTGCCTTTGGTCAGACAAATGCCTTTGGTCAAGCATCTGCTCCAAATCCTTTTTCAGCGTCGTCGTCTTCCAGTCCTTTTGGTAATAAACCAGCAGGATTTGGTGGTAGCACATTTGCATCATCATCAGGTTCTGCATTTAATTCACCATTTGGGG
CAACCTCCTCATCCTCCCCTTTTGGCACTGCTTCTTCAGCTCCATCTCTTTTTGGATCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAACTCCTTTTGGAGCATCAAGCACACCTGCATTTGGTTCATCACCTTTTGGTCAACCATCTCAACCTGCATCTCTTTTTGGTTCAACCCCATCGTTAGGGTCGGCT
CCTGCATTTGGATCAAGCACACCTTTTGGAAGTACCCAGTCATCTGGATTGTTTCAATCTTCCACGTCGGCTTTTGGGCAATCCACACCGGCATTTGGCCAAACCACACCGACGTTTGGCCAATCCACACCAGCGTTTGGCCAATCCACACCAGCGTTTGGACAGTCAACTCCAGCTTTTGGCCAATCCACGCCAGCGTT
TGGACAGTCAACACCAGCTTTTGGCCAAAGCACTCCTGCTTTTGGGAGCAACCTGTTTTCTAGCAGCACATCATCATTGATGTCGCAGAGCAAACCAGCAGGCCTTGTACAAGCAACGCCTTCCTTGTTCAATGGCTTTCAAACAACCAACCCTGCCCAGACACAGGGTGCATTTTCTTTTGGTAATTTTGGCCAGTCGC
AGCCAGCTGCTTCTGGTGGTTTTGGTGGCGTATCAACTCCAGCTTTTGGGCAGAGCACCTTTGGGCAACCCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGTAACAAATCCATTTGGAACTCTTCCAGCAATGCCTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCTAGT
TTGCCTGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACAATCCTAGGAAGGATAGTCCCAAGGTATCATTTTTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGAAAA
CCCAAGGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGCTGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAATGGAACAAAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTG
AGGATACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAATGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTT
CGGCATTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAGGTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGT
GTACATGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCATATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCA
AAGGAGAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGGATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAA
TGGCTTCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCGAATGGTCGTTAGTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAA
Intron 7 GTTACAAGAT ... ACTTCATTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.48 | 61 | 8 | 11 |
| A2 | 22.64 | 41 | 9 | 15 |
| A3 | 14.5 | 56 | 6 | 13 |
| A4 | 19.64 | 45 | 8 | 14 |
| A5 | 17.07 | 34 | 5 | 9 |
| A6 | 19.84 | 103 | 21 | 30 |
| A7 | 19.67 | 96 | 15 | 32 |
| A8 | 16.98 | 66 | 11 | 16 |
| A9 | 19.28 | 90 | 21 | 22 |
| A10 | 16.67 | 85 | 11 | 23 |
>TRINITY_DN44423_c1_g2_i4 from sample A9 / Example spliced isoformGTTTATAACTCGCGTTCAAACCACAAGTTAACTGACCCTCAGAAGCCGGGGGTGGGTTTGCGTTTTCTGTATTCCTCTGCCCTTCCTTTTCCTTCTTCTTATGCTGTATAGTTTTCATTGTTTAGAGGCGTTCTCTGCGAATTCCTTGAAGAATCCGACTGCTATCTTTGCGTCCAACGCGCCCATTCTACGTCTCAAAT
CGCAGCAAAGCTTAAATCCCGAGAAAAAGTTGTTGAGATCGGGGTTTTCTAAGGCGTCTTCTGGAGAATTTAAGGATCGAATAATATCGGATTTCACCATGTTTGGATCGAGTAACCCATTTGGGCAACCGAGTTCCAATCCATTTGGAGCACAGCCAGCATTTGGGCAGACCAACACTGCAAATTCTAATCCATTTAGC
CCGAGGCCTTTTGGCAGCACAAGTCTGTTTGGTGCGCAGACTGGCAGTTCAATGTTCGGAGGCACAGCAACGGGCGTTTTTGGAGCCACACAGACTCCCTCGCCATTGGCTTCTTCCACCTCAGCATTTGGCACCTCTTCTCCAGCGTTTGGCGCCTCCTCGACACCAGCTTTTGGTGCAACTTCAACACCTGCATTCGG
TGCTGCGCCATCTACTCCATTTGGTGGAGCATCTACATTTGGACAAAAACCTGCATTTGGAGGATTTGGAACACCAAGTCCTGCTCAATCAAGTCCATTTGGAAGTACTTTTGGTCAGACGCAACCAGCTTTTGGTAGTCAACTTTTTGGTGCAGCCAGTCAGCCTGCTTTCGGTGCAACTACCACACCTGCATTTGGAT
CTACTTCAACACCTGCATTTGGTACCACAACACCTGCATTTGGGTCAACAAGTGCACCTGCCTTTGGAGCTTCCAGTACTCCAGCTTTTGGGGCTTCTAGTACTCCAGCATTTGGGGCTTCAAGCAGTCCTTCCTTTGGTTTTGGAAGCACTAACAATTTTGGTCAATCAGCTCCAGCCTTTGGTGCAGCATCTACTCCA
GCATTTGGGAGCAACCCAACATTTGGAAGCACTCCATCCCCATTTGGTCAGAGCTCAGCTTTTGGAGCTCAGTCAACGACTCCAACATTTGGCAGCCCGGGATTTGGACAGACATCCTTTGGTGGACAACGTGGAGGTAGTAGAGCAGCACCGTACACAACTACAAATGAGTCAGATACCGTAGGTGGTCAGGCACCTGG
GAAACTTATTTCCATATCTGCTATGCCACAATACAAGGACAAAAGTCATGAGGAATTAAGATGGGAGGATTATCAATTGGGAGACAAAGGTGGCCCAAATACTGCAAGTCAACAACCTGCTGCAGGGGGAAGTATATTTTCTCAGCCAGGACAGTCGAATCCCTTTGGTCAAACAACACCTGCCTTTGGTCAAACAACAC
CTGCCTTTGGTCAGACAAATGCCTTTGGTCAAGCATCTGCTCCAAATCCTTTTTCAGCGTCGTCGTCTTCCAGTCCTTTTGGTAATAAACCAGCAGGATTTGGTGGTAGCACATTTGCATCATCATCAGGTTCTGCATTTAATTCACCATTTGGGGCAACCTCCTCATCCTCCCCTTTTGGCACTGCTTCTTCAGCTCCA
TCTCTTTTTGGATCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAACTCCTTTTGGAGCATCAAGCACACCTGCATTTGGTTCATCACCTTTTGGTCAACCATCTCAACCTGCATCTCTTTTTGGTTCAACCCCATCGTTAGGGTCGGCTCCTGCATTTGGATCAAGCACACCTTTTGGAAGTACCCAGTCATC
TGGATTGTTTCAATCTTCCACGTCGGCTTTTGGGCAATCCACACCGGCATTTGGCCAAACCACACCGACGTTTGGCCAATCCACACCAGCGTTTGGCCAATCCACACCAGCGTTTGGACAGTCAACTCCAGCTTTTGGCCAATCCACGCCAGCGTTTGGACAGTCAACACCAGCTTTTGGCCAAAGCACTCCTGCTTTTG
GGAGCAACCTGTTTTCTAGCAGCACATCATCATTGATGTCGCAGAGCAAACCAGCAGGCCTTGTACAAGCAACGCCTTCCTTGTTCAATGGCTTTCAAACATCCAACCCTGCCCAGACACAGGGTGCATTTTCTTTTGGTAATTTTGGCCAGTCGCAGCCAGCTGCTTCTGGTGGTTTTGGTGGCGTATCAACTCCAGCT
TTTGGGCAGAGCACCTTTGGGCAACCCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGTAACAAATCCATTTGGAACTCTTCCAGCAATGCCTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCTAGTTTGCCTGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCT
GTTGACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACAATCCTAGGAAGGATAGTCCCAAGGTATCATTTTTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGAAAACCCAAGGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCT
CTGCTGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAATGGAACAAAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTGAGGATACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCT
GATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAATGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTTCGGCATTCAGACTACTACACAGAACCGAAGATACAGGAATTGGC
TGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAGGTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGTGTACATGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTA
ACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCATATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCAAAGGAGAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGT
CTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGGATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAATGGCTTCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTA
CGTGATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCGAATGGTCGTTAGTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGATATGAAATAATATTTTATTGTGGGTTG
>TRINITY_DN44423_c1_g2_i3 from sample A9 / Example unspliced isoform:GTTTATAACTCGCGTTCAAACCACAAGTTAACTGACCCTCAGAAGCCGGGGGTGGGTTTGCGTTTTCTGTATTCCTCTGCCCTTCCTTTTCCTTCTTCTTATGCTGTATAGTTTTCATTGTTTAGAGGCGTTCTCTGCGAATTCCTTGAAGAATCCGACTGCTATCTTTGCGTCCAACGCGCCCATTCTACGTCTCAAAT
CGCAGCAAAGCTTAAATCCCGAGAAAAAGTTGTTGAGATCGGGGTTTTCTAAGGCGTCTTCTGGAGAATTTAAGGATCGAATAATATCGGATTTCACCATGTTTGGATCGAGTAACCCATTTGGGCAACCGAGTTCCAATCCATTTGGAGCACAGCCAGCATTTGGGCAGACCAACACTGCAAATTCTAATCCATTTAGC
CCGAGGCCTTTTGGCAGCACAAGTCTGTTTGGTGCGCAGACTGGCAGTTCAATGTTCGGAGGCACAGCAACGGGCGTTTTTGGAGCCACACAGACTCCCTCGCCATTGGCTTCTTCCACCTCAGCATTTGGCACCTCTTCTCCAGCGTTTGGCGCCTCCTCGACACCAGCTTTTGGTGCAACTTCAACACCTGCATTCGG
TGCTGCGCCATCTACTCCATTTGGTGGAGCATCTACATTTGGACAAAAACCTGCATTTGGAGGATTTGGAACACCAAGTCCTGCTCAATCAAGTCCATTTGGAAGTACTTTTGGTCAGACGCAACCAGCTTTTGGTAGTCAACTTTTTGGTGCAGCCAGTCAGCCTGCTTTCGGTGCAACTACCACACCTGCATTTGGAT
CTACTTCAACACCTGCATTTGGTACCACAACACCTGCATTTGGGTCAACAAGTGCACCTGCCTTTGGAGCTTCCAGTACTCCAGCTTTTGGGGCTTCTAGTACTCCAGCATTTGGGGCTTCAAGCAGTCCTTCCTTTGGTTTTGGAAGCACTAACAATTTTGGTCAATCAGCTCCAGCCTTTGGTGCAGCATCTACTCCA
GCATTTGGGAGCAACCCAACATTTGGAAGCACTCCATCCCCATTTGGTCAGAGCTCAGCTTTTGGAGCTCAGTCAACGACTCCAACATTTGGCAGCCCGGGATTTGGACAGACATCCTTTGGTGGACAACGTGGAGGTAGTAGAGCAGCACCGTACACAACTACAAATGAGTCAGATACCGTAGGTGGTCAGGCACCTGG
GAAACTTATTTCCATATCTGCTATGCCACAATACAAGGACAAAAGTCATGAGGAATTAAGATGGGAGGATTATCAATTGGGAGACAAAGGTGGCCCAAATACTGCAAGTCAACAACCTGCTGCAGGGGGAAGTATATTTTCTCAGCCAGGACAGTCGAATCCCTTTGGTCAAACAACACCTGCCTTTGGTCAAACAACAC
CTGCCTTTGGTCAGACAAATGCCTTTGGTCAAGCATCTGCTCCAAATCCTTTTTCAGCGTCGTCGTCTTCCAGTCCTTTTGGTAATAAACCAGCAGGATTTGGTGGTAGCACATTTGCATCATCATCAGGTTCTGCATTTAATTCACCATTTGGGGCAACCTCCTCATCCTCCCCTTTTGGCACTGCTTCTTCAGCTCCA
TCTCTTTTTGGATCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAACTCCTTTTGGAGCATCAAGCACACCTGCATTTGGTTCATCACCTTTTGGTCAACCATCTCAACCTGCATCTCTTTTTGGTTCAACCCCATCGTTAGGGTCGGCTCCTGCATTTGGATCAAGCACACCTTTTGGAAGTACCCAGTCATC
TGGATTGTTTCAATCTTCCACGTCGGCTTTTGGGCAATCCACACCGGCATTTGGCCAAACCACACCGACGTTTGGCCAATCCACACCAGCGTTTGGCCAATCCACACCAGCGTTTGGACAGTCAACTCCAGCTTTTGGCCAATCCACGCCAGCGTTTGGACAGTCAACACCAGCTTTTGGCCAAAGCACTCCTGCTTTTG
GGAGCAACCTGTTTTCTAGCAGCACATCATCATTGATGTCGCAGAGCAAACCAGCAGGCCTTGTACAAGCAACGCCTTCCTTGTTCAATGGCTTTCAAACATCCAACCCTGCCCAGACACAGGGTGCATTTTCTTTTGGTAATTTTGGCCAGTCGCAGCCAGgttacaagatttgacatgggatgtgtatcttttctgca
cttcattagCTGCTTCTGGTGGTTTTGGTGGCGTATCAACTCCAGCTTTTGGGCAGAGCACCTTTGGGCAACCCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGTAACAAATCCATTTGGAACTCTTCCAGCAATGCCTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCT
AGTTTGCCTGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACAATCCTAGGAAGGATAGTCCCAAGGTATCATTTTTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGA
AAACCCAAGGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGCTGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAATGGAACAAAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTG
GTGAGGATACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAATGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAA
CTTCGGCATTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAGGTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCT
AGTGTACATGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCATATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTG
CCAAAGGAGAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGGATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAG
GAATGGCTTCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCGAATGGTCGTTAGTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGA
TATGAAATAATATTTTATTGTGGGTTG
Intron 8 GTATGTTAAT ... ACTTCATTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.59 | 59.4 | 2.4 | 11.2 |
| A2 | 22.19 | 39.6 | 4.6 | 12.4 |
| A3 | 13.43 | 55.2 | 2.2 | 9.2 |
| A4 | 17.82 | 42.8 | 1.6 | 10.4 |
| A5 | 22.02 | 33.2 | 6.8 | 9.8 |
| A6 | 13.96 | 99.2 | 4 | 18.4 |
| A7 | 16.23 | 93.4 | 3.2 | 20.6 |
| A8 | 12.94 | 63.8 | 3.4 | 10.6 |
| A9 | 11.78 | 86.4 | 4.8 | 13.2 |
| A10 | 15.5 | 83 | 4.2 | 16.8 |
>TRINITY_DN120106_c1_g2_i4 from sample A1 / Example spliced isoformGCGGGGGCATTTTTTTCAGTTTATAGGCATCCCTGAATTGCAGTTTGAAATCTCATCTCTCTAATGAGATAGATGCTCAGGGCATTTTTTTCAGTTTATTAGGCATTCTGGAATGTGTGTTTATTTCTGTGTTAATCCTATATAGCAATTCTTTGTTATGTGATGTATTTGGACCTTGTGTTTTAATATTTGATTGGTAT
GAACTGCAGCCTTCCTTGTTCAATGGCTTTCAAACATCCAACCCTGCCCAGACACAGGGTGCATTTTCTTTTGGTAATTTTGGCCAGTCGCAGCCAGCTGCTTCTGGTGGTTTTGGTGGCGTATCAACTCCAGCTTTTGGGCAGAGCACCTTTGGGCAACCCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGT
AACAAATCCATTTGGAACTCTTCCAGCAATGCCTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCTAGTTTGCCTGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACAATCCTA
GGAAGGATAGTCCCAAGGTATCATTTTTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGAAAACCCAAGGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGCTGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAATGGAACA
AAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTGAGGATACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAA
TGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTTCGGCATTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAG
GTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGTGTACATGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCAT
ATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCAAAGGAGAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGG
ATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAATGGCTTCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCG
AATGGTCGTTACTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGATATGAAATAATATTTTATTGTGGGTTGTTAACTAAAAAAA
>TRINITY_DN120106_c1_g2_i1 from sample A1 / Example unspliced isoform:GCCAGTCGCAGCCAGgtatgttaatgatcattattactaactatagatattccaattctattagttggatttatctttcactatcaatggaatttgtattaggttacaagatttgacatgggatgtgtatcttttctgcacttcattagCTGCTTCTGGTGGTTTTGGTGGCGTATCAACTCCAGCTTTTGGGCAGAGCA
CCTTTGGGCAACCGTGAGAACTACAATTATTTCCTTGCTTCTCTTTCTTATGAATATGAGATTCATGTCATTAGTGCCGTTTGCTCTTCTAACAGAGCACCTCCTTCCTCTTGTTGCAGCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGTAACAAATCCATTTGGAACTCTTCCAGCAATGCCTCAGATGTC
TATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCTAGTTTGCCTGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACAATCCTAGGAAGGATAGTCCCAAGGTATCATTTTTCAGCGATAGTGAAG
AAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGAAAACCCAAGGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGCTGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAATGGAACAAAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCA
TTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTGAGGATACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAATGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGC
TATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTTCGGCATTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAGGTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGC
GTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGTGTACATGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCATATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAG
AGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCAAAGGAGAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGGATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACT
ATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAATGGCTTCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCGAATGGTCGTTACTTGATCCGTTATTTGCTATGTAAGACCCAT
GGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGATATGAAATAATATTTTATTGTGGGTTGTTAACTAAAAAAA
Intron 9 GTGAGATCTC ... TGTATGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.21 | 107 | 1 | 40 |
| A2 | 26.09 | 102 | 0 | 36 |
| A3 | 18.64 | 96 | 1 | 22 |
| A4 | 30.68 | 61 | 0 | 27 |
| A5 | 35.09 | 37 | 0 | 20 |
| A6 | 25.57 | 227 | 0 | 78 |
| A7 | 23.05 | 217 | 1 | 65 |
| A8 | 22.22 | 245 | 2 | 70 |
| A9 | 26.84 | 199 | 1 | 73 |
| A10 | 19.1 | 161 | 0 | 38 |
>TRINITY_DN120106_c1_g2_i4 from sample A1 / Example spliced isoformGCGGGGGCATTTTTTTCAGTTTATAGGCATCCCTGAATTGCAGTTTGAAATCTCATCTCTCTAATGAGATAGATGCTCAGGGCATTTTTTTCAGTTTATTAGGCATTCTGGAATGTGTGTTTATTTCTGTGTTAATCCTATATAGCAATTCTTTGTTATGTGATGTATTTGGACCTTGTGTTTTAATATTTGATTGGTAT
GAACTGCAGCCTTCCTTGTTCAATGGCTTTCAAACATCCAACCCTGCCCAGACACAGGGTGCATTTTCTTTTGGTAATTTTGGCCAGTCGCAGCCAGCTGCTTCTGGTGGTTTTGGTGGCGTATCAACTCCAGCTTTTGGGCAGAGCACCTTTGGGCAACCCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGT
AACAAATCCATTTGGAACTCTTCCAGCAATGCCTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCTAGTTTGCCTGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACAATCCTA
GGAAGGATAGTCCCAAGGTATCATTTTTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGAAAACCCAAGGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGCTGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAATGGAACA
AAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTGAGGATACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAA
TGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTTCGGCATTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAG
GTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGTGTACATGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCAT
ATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCAAAGGAGAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGG
ATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAATGGCTTCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCG
AATGGTCGTTACTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGATATGAAATAATATTTTATTGTGGGTTGTTAACTAAAAAAA
>TRINITY_DN120106_c1_g2_i5 from sample A1 / Example unspliced isoform:GCCATACCTATTAATGATAATGgtgagatctcaggattcactttcaaaatgtagggtgtggtgcccattagtcttgataataattggactgtaatttgtatgcttcttaattggaccgacaatgggcttgtaatttggatggtggttaagcttagcctactattcttgaggtgtagttcactgttatttacttggttttg
attaacttatcaccttataaggaccaaggtgcaatgacaatgttgatactgtttttgatgtgtccactctctgaaatattttgttctgtatgtcagGAACAAAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTGAGGATACA
AACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAATGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTTCGGCATTC
AGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAGGTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGTGTACATGG
ATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCATATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCAAAGGAGAA
TGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGGATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAATGGCTTCT
GGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCGAATGGTCGTTACTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGATATGAAATAAT
ATTTTATTGTGGGTTGTTAACTAAAAAAA
Intron 10 GTATGTTAAT ... TCAACTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 48.39 | 32 | 8 | 30 |
| A2 | 57.14 | 21 | 15 | 28 |
| A3 | 57.78 | 19 | 7 | 26 |
| A4 | 56.25 | 21 | 8 | 27 |
| A5 | 63.16 | 7 | 10 | 12 |
| A6 | 52.34 | 61 | 20 | 67 |
| A7 | 56.19 | 46 | 16 | 59 |
| A8 | 52 | 36 | 13 | 39 |
| A9 | 47.11 | 64 | 22 | 57 |
| A10 | 54.7 | 53 | 13 | 64 |
>TRINITY_DN44423_c1_g2_i1 from sample A9 / Example spliced isoformGTTTATAACTCGCGTTCAAACCACAAGTTAACTGACCCTCAGAAGCCGGGGGTGGGTTTGCGTTTTCTGTATTCCTCTGCCCTTCCTTTTCCTTCTTCTTATGCTGTATAGTTTTCATTGTTTAGAGGCGTTCTCTGCGAATTCCTTGAAGAATCCGACTGCTATCTTTGCGTCCAACGCGCCCATTCTACGTCTCAAAT
CGCAGCAAAGCTTAAATCCCGAGAAAAAGTTGTTGAGATCGGGGTTTTCTAAGGCGTCTTCTGGAGAATTTAAGGATCGAATAATATCGGATTTCACCATGTTTGGATCGAGTAACCCATTTGGGCAACCGAGTTCCAATCCATTTGGAGCACAGCCAGCATTTGGGCAGACCAACACTGCAAATTCTAATCCATTTAGC
CCGAGGCCTTTTGGCAGCACAAGTCTGTTTGGTGCGCAGACTGGCAGTTCAATGTTCGGAGGCACAGCAACGGGCGTTTTTGGAGCCACACAGACTCCCTCGCCATTGGCTTCTTCCACCTCAGCATTTGGCACCTCTTCTCCAGCGTTTGGCGCCTCCTCGACACCAGCTTTTGGTGCAACTTCAACACCTGCATTCGG
TGCTGCGCCATCTACTCCATTTGGTGGAGCATCTACATTTGGACAAAAACCTGCATTTGGAGGATTTGGAACACCAAGTCCTGCTCAATCAAGTCCATTTGGAAGTACTTTTGGTCAGACGCAACCAGCTTTTGGTAGTCAACTTTTTGGTGCAGCCAGTCAGCCTGCTTTCGGTGCAACTACCACACCTGCATTTGGAT
CTACTTCAACACCTGCATTTGGTACCACAACACCTGCATTTGGGTCAACAAGTGCACCTGCCTTTGGAGCTTCCAGTACTCCAGCTTTTGGGGCTTCTAGTACTCCAGCATTTGGGGCTTCAAGCAGTCCTTCCTTTGGTTTTGGAAGCACTAACAATTTTGGTCAATCAGCTCCAGCCTTTGGTGCAGCATCTACTCCA
GCATTTGGGAGCAACCCAACATTTGGAAGCACTCCATCCCCATTTGGTCAGAGCTCAGCTTTTGGAGCTCAGTCAACGACTCCAACATTTGGCAGCCCGGGATTTGGACAGACATCCTTTGGTGGACAACGTGGAGGTAGTAGAGCAGCACCGTACACAACTACAAATGAGTCAGATACCGTAGGTGGTCAGGCACCTGG
GAAACTTATTTCCATATCTGCTATGCCACAATACAAGGACAAAAGTCATGAGGAATTAAGATGGGAGGATTATCAATTGGGAGACAAAGGTGGCCCAAATACTGCAAGTCAACAACCTGCTGCAGGGGGAAGTATATTTTCTCAGCCAGGACAGTCGAATCCCTTTGGTCAAACAACACCTGCCTTTGGTCAAACAACAC
CTGCCTTTGGTCAGACAAATGCCTTTGGTCAAGCATCTGCTCCAAATCCTTTTTCAGCGTCGTCGTCTTCCAGTCCTTTTGGTAATAAACCAGCAGGATTTGGTGGTAGCACATTTGCATCATCATCAGGTTCTGCATTTAATTCACCATTTGGGGCAACCTCCTCATCCTCCCCTTTTGGCACTGCTTCTTCAGCTCCA
TCTCTTTTTGGATCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAACTCCTTTTGGAGCATCAAGCACACCTGCATTTGGTTCATCACCTTTTGGTCAACCATCTCAACCTGCATCTCTTTTTGGTTCAACCCCATCGTTAGGGTCGGCTCCTGCATTTGGATCAAGCACACCTTTTGGAAGTACCCAGTCATC
TGGATTGTTTCAATCTTCCACGTCGGCTTTTGGGCAATCCACACCGGCATTTGGCCAAACCACACCGACGTTTGGCCAATCCACACCAGCGTTTGGCCAATCCACACCAGCGTTTGGACAGTCAACTCCAGCTTTTGGCCAATCCACGCCAGCGTTTGGACAGTCAACACCAGCTTTTGGCCAAAGCACTCCTGCTTTTG
GGAGCAACCTGTTTTCTAGCAGCACATCATCATTGATGTCGCAGAGCAAACCAGCAGGCCTTGTACAAGCAACGCCTTCCTTGTTCAATGGCTTTCAAACATCCAACCCTGCCCAGACACAGGGTGCATTTTCTTTTGGTAATTTTGGCCAGTCGCAGCCAGCTTTTGGGCAGAGCACCTTTGGGCAACCCACTCAGCAG
AATATAATGGTTACAACACCTCAACCTGTAACAAATCCATTTGGAACTCTTCCAGCAATGCCTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCTAGTTTGCCTGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTCACTCAAAGGTCAAGGAT
CCGCATGCATTCACGTAGATACAATCCTAGGAAGGATAGTCCCAAGGTATCATTTTTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGAAAACCCAAGGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGCTGCATGCAAACCAACAGCAAACATGAAGGAAA
TGGCCATACCTATTAATGATAATGGAACAAAGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTGAGGATACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGT
CTTCATGAGGAGCATAATCACAGAGGAAATGGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTTCGGCATTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCG
GGTTAAAGACTTTGTGGTTGGTAGGAGAGGTTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGTGTACATGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAAT
GTGTTGACAAGAAGACAGGTCAACACCATATGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCAAAGGAGAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTA
CGTATTCACAATCTTCTCATATCTGAAGGATTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAATGGCTTCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGT
GCTGTTTACGCTGCTCGTTTGTTTGATCGAATGGTCGTTAGTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGATATGAAATAATATTTTATTGTGGGTTG
>TRINITY_DN44423_c1_g2_i2 from sample A9 / Example unspliced isoform:GTTTATAACTCGCGTTCAAACCACAAGTTAACTGACCCTCAGAAGCCGGGGGTGGGTTTGCGTTTTCTGTATTCCTCTGCCCTTCCTTTTCCTTCTTCTTATGCTGTATAGTTTTCATTGTTTAGAGGCGTTCTCTGCGAATTCCTTGAAGAATCCGACTGCTATCTTTGCGTCCAACGCGCCCATTCTACGTCTCAAAT
CGCAGCAAAGCTTAAATCCCGAGAAAAAGTTGTTGAGATCGGGGTTTTCTAAGGCGTCTTCTGGAGAATTTAAGGATCGAATAATATCGGATTTCACCATGTTTGGATCGAGTAACCCATTTGGGCAACCGAGTTCCAATCCATTTGGAGCACAGCCAGCATTTGGGCAGACCAACACTGCAAATTCTAATCCATTTAGC
CCGAGGCCTTTTGGCAGCACAAGTCTGTTTGGTGCGCAGACTGGCAGTTCAATGTTCGGAGGCACAGCAACGGGCGTTTTTGGAGCCACACAGACTCCCTCGCCATTGGCTTCTTCCACCTCAGCATTTGGCACCTCTTCTCCAGCGTTTGGCGCCTCCTCGACACCAGCTTTTGGTGCAACTTCAACACCTGCATTCGG
TGCTGCGCCATCTACTCCATTTGGTGGAGCATCTACATTTGGACAAAAACCTGCATTTGGAGGATTTGGAACACCAAGTCCTGCTCAATCAAGTCCATTTGGAAGTACTTTTGGTCAGACGCAACCAGCTTTTGGTAGTCAACTTTTTGGTGCAGCCAGTCAGCCTGCTTTCGGTGCAACTACCACACCTGCATTTGGAT
CTACTTCAACACCTGCATTTGGTACCACAACACCTGCATTTGGGTCAACAAGTGCACCTGCCTTTGGAGCTTCCAGTACTCCAGCTTTTGGGGCTTCTAGTACTCCAGCATTTGGGGCTTCAAGCAGTCCTTCCTTTGGTTTTGGAAGCACTAACAATTTTGGTCAATCAGCTCCAGCCTTTGGTGCAGCATCTACTCCA
GCATTTGGGAGCAACCCAACATTTGGAAGCACTCCATCCCCATTTGGTCAGAGCTCAGCTTTTGGAGCTCAGTCAACGACTCCAACATTTGGCAGCCCGGGATTTGGACAGACATCCTTTGGTGGACAACGTGGAGGTAGTAGAGCAGCACCGTACACAACTACAAATGAGTCAGATACCGTAGGTGGTCAGGCACCTGG
GAAACTTATTTCCATATCTGCTATGCCACAATACAAGGACAAAAGTCATGAGGAATTAAGATGGGAGGATTATCAATTGGGAGACAAAGGTGGCCCAAATACTGCAAGTCAACAACCTGCTGCAGGGGGAAGTATATTTTCTCAGCCAGGACAGTCGAATCCCTTTGGTCAAACAACACCTGCCTTTGGTCAAACAACAC
CTGCCTTTGGTCAGACAAATGCCTTTGGTCAAGCATCTGCTCCAAATCCTTTTTCAGCGTCGTCGTCTTCCAGTCCTTTTGGTAATAAACCAGCAGGATTTGGTGGTAGCACATTTGCATCATCATCAGGTTCTGCATTTAATTCACCATTTGGGGCAACCTCCTCATCCTCCCCTTTTGGCACTGCTTCTTCAGCTCCA
TCTCTTTTTGGATCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAACTCCTTTTGGAGCATCAAGCACACCTGCATTTGGTTCATCACCTTTTGGTCAACCATCTCAACCTGCATCTCTTTTTGGTTCAACCCCATCGTTAGGGTCGGCTCCTGCATTTGGATCAAGCACACCTTTTGGAAGTACCCAGTCATC
TGGATTGTTTCAATCTTCCACGTCGGCTTTTGGGCAATCCACACCGGCATTTGGCCAAACCACACCGACGTTTGGCCAATCCACACCAGCGTTTGGCCAATCCACACCAGCGTTTGGACAGTCAACTCCAGCTTTTGGCCAATCCACGCCAGCGTTTGGACAGTCAACACCAGCTTTTGGCCAAAGCACTCCTGCTTTTG
GGAGCAACCTGTTTTCTAGCAGCACATCATCATTGATGTCGCAGAGCAAACCAGCAGGCCTTGTACAAGCAACGCCTTCCTTGTTCAATGGCTTTCAAACATCCAACCCTGCCCAGACACAGGGTGCATTTTCTTTTGGTAATTTTGGCCAGTCGCAGCCAGgtatgttaatgatcattattactaactatagatattcc
aattctattagttggatttatctttcactatcaatggaatttgtattaggttacaagatttgacatgggatgtgtatcttttctgcacttcattagctgcttctggtggttttggtggcgtatcaactccagCTTTTGGGCAGAGCACCTTTGGGCAACCCACTCAGCAGAATATAATGGTTACAACACCTCAACCTGTA
ACAAATCCATTTGGAACTCTTCCAGCAATGCCTCAGATGTCTATTGGCCGAAGTGGGGGATCTCCTTCCGTTCAATATGGAATATCTAGTTTGCCTGTTAATGAAAGGCCTGCTCAAGTAAGGACAACATCTCTGTTGACTCCAAGGCATGTCACTCAAAGGTCAAGGATCCGCATGCATTCACGTAGATACAATCCTAG
GAAGGATAGTCCCAAGGTATCATTTTTCAGCGATAGTGAAGAAGCACCTAGCACTCCAAAGGCAGATGCCATGTTCATCCCAAGAGAAAACCCAAGGGCACTTTTCATTCAACAGCGTGATCAATCTCCTGCCTCTGCTGCATGCAAACCAACAGCAAACATGAAGGAAATGGCCATACCTATTAATGATAATGGAACAA
AGGCAGATGATAAAAATGGGGCATCATCATTTGAAAAGGCATTTACACTAGAACCAGAAGACAACATTGACGACTGGTCATGTGGTGGTGAGGATACAAACCTTCGGAATAACCCACTGTCATCGAAGTCAGCTGATGCCAATTTAAAATCTGCTTCAAGGCAGAATGGTCTTCATGAGGAGCATAATCACAGAGGAAAT
GGTTATATCTCAATTTCTGGCCATAGAGCTGGGGAAGCTGCTATAGTATATGAGCATGGTGCAGACATTGAAGCCCTTATGCCTAAACTTCGGCATTCAGACTACTACACAGAACCGAAGATACAGGAATTGGCTGCCAAAGAACGTGCGGAGCCAGGTTATTGCCGCCGGGTTAAAGACTTTGTGGTTGGTAGGAGAGG
TTATGGTTCTGTGAAGTTTTTTGGGGAAACTGATGTGAGGCGTCTAGATTTAGAGAGTGTTATTCAGTTTAACAAATGCGAGGTTCTAGTGTACATGGATGAAAGCAAAAAGCCACCTGCAGGTCAGGGACTTAACAAGCCTGCAGAAATAACTTTGTTGAATGTTAAATGTGTTGACAAGAAGACAGGTCAACACCATA
TGGAAGGTGCAGAGGTGGAAAAATTTGAGAAAAGGCTCAAGAGAAAAACAGAAGAGCAAGGGGCGGAATTTGTTTCATATAGTGCTGCCAAAGGAGAATGGAAATTTCGTGTGAAGCATTTCAGTAAATACTGTCTTAATGAATCTGGTTTGAAAGAAAAATTGTATCTACGTATTCACAATCTTCTCATATCTGAAGGA
TTAGATGAGATATGATGTGAGCCTCAACATCTCTGGCCACTATTACTATCTCCATATTGTTTTGTGTACATGTTTATAGGCCATTAGGAATGGCTTCTGGGTTAACCTGTATGCCCTTTGATGTATTGGTTTTACGTGATGTTTATAATATGATGGATCTCTAGGGATGTGCTGTTTACGCTGCTCGTTTGTTTGATCGA
ATGGTCGTTAGTTGATCCGTTATTTGCTATGTAAGACCCATGGGCTAAGAATACAAGCATTTATCACTATTTTAAAAGTATTTTTGATATGAAATAATATTTTATTGTGGGTTG
Intron 11 GTAGCGGAAA ... TGTTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.94 | 168 | 1 | 50 |
| A2 | 18.24 | 130 | 6 | 29 |
| A3 | 23.08 | 140 | 2 | 42 |
| A4 | 18.18 | 81 | 2 | 18 |
| A5 | 18.52 | 88 | 2 | 20 |
| A6 | 24 | 114 | 1 | 36 |
| A7 | 26.32 | 196 | 1 | 70 |
| A8 | 27.91 | 93 | 0 | 36 |
| A9 | 30.34 | 163 | 0 | 71 |
| A10 | 25.86 | 129 | 0 | 45 |
>TRINITY_DN103650_c0_g1_i5 from sample A3 / Example spliced isoformGTTTATAACTCGCGTTCAAACCACAAGTTAACTGACCCTCAGAAGCCGGGGGTGGGTTTGCGTTTTCTGTATTCCTCTGCCCTTCCTTTTCCTTCTTCTTATGCTGTATAGTTTTCATTGTTTAGAGGCGTTCTCTGCGAATTCCTTGAAGAATCCGACTGCTATCTTTGCGTCCAACGCGCCCATTCTACGTCTCAAAT
CGCAGCAAAGCTTAAATCCCGAGAAAAAGTTGTTGAGATCGGGGTTTTCTAAGGCGTCTTCTGGAGAATTTAAGGATCGAATAATATCGGATTTCACCATGTTTGGATCGAGTAACCCATTTGGGCAACCGAGTTCCAATCCATTTGGAGCACAGCCAGCATTTGGGCAGACCAACACTGCAAATTCTAATCCATTTAGC
CCGAGGCCTTTTGGCAGCACAAGTCTGTTTGGTGCGCAGACTGGCAGTTCAATGTTCGGAGGCACAGCAACGGGCGTTTTTGGAGCCACACAGACTCCCTCGCCATTGGCTTCTTCCACCTCAGCATTTGGCACCTCTTCTCCAGCGTTTGGCGCCTCCTCGACACCAGCTTTTGGTGCAACTTCAACACCTGCATTCGG
TGCTGCGCCATCTACTCCATTTGGTGGAGCATCTACATTTGGACAAAAACCTGCATTTGGAGGATTTGGAACACCAAGTCCTGCTCAATCAAGTCCATTTGGAAGTACTTTTGGTCAGACGCAACCAGCTTTTGGTAGTCAACTTTTTGGTGCAGCCAGTCAGCCTGCTTTCGGTGCAACTACCACACCTGCATTTGGAT
CTACTTCAACACCTGCATTTGGTACCACAACACCTGCATTTGGGTCAACAAGTGCACCTGCCTTTGGAGCTTCCAGTACTCCAGCTTTTGGGGCTTCTAGTACTCCAGCATTTGGGGCTTCAAGCAGTCCTTCCTTTGGTTTTGGAAGCACTAACAATTTTGGTCAATCAGCTCCAGCCTTTGGTGCAGCATCTACTCCA
GCATTTGGGAGCAACCCAACATTTGGAAGCACTCCATCCCCATTTGGTCAGAGCTCAGCTTTTGGAGCTCAGTCAACGACTCCAACATTTGGCAGCCCGGGATTTGGACAGACATCCTTTGGTGGACAACGTGGAGGTAGTAGAGCAGCACCGTACACAACTACAAATGAGTCAGATACCGTAGGTGGTCAGGCACCTGG
GAAACTTATTTCCATATCTGCTATGCCACAATACAAGGACAAAAGTCATGAGGAATTAAGATGGGAGGATTATCAATTGGGAGACAAAGGTGGCCCAAATACTGCAAGTCAACAACCTGCTGCAGGGGGAAGTATATTTTCTCAGCCAGGACAGTCGAATCCCTTTGGTCAAACAACACCTGCCTTTGGTCAAACAACAC
CTGCCTTTGGTCAGACAAATGCCTTTGGTCAAGCATCTGCTCCAAATCCTTTTTCAGCGTCGTCGTCTTCCAGTCCTTTTGGTAATAAACCAGCAGGATTTGGTGGTAGCACATTTGCATCATCATCAGGTTCTGCATTTAATTCACCATTTGGGGCAACCTCCTCATCCTCCCCTTTTGGCACTGCTTCTTCAGCTCCA
TCTCTTTTTGGATCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAACTCCTTTTGGAGCATCAAGCACACCTGCATTTGGTTCATCACCTTTTGGTCAACCATCTCAACCTGCATCTCTTTTTGGTTCAACCCCATCGTTAGGGTCGGCTCCTGCATTTGGATCAAGCACACCTTTTGGAAGTACCCAGTCATC
TGGATTGTTTCAATCTTCCACGTCGGCTTTTGGGCAATCCACACCGGCATTTGGCCAAACCACACCGACGTTTGGCCAATCCACACCAGCGTTTGGCCAATCCACACCAGCGTTTGGACAGTCAACTCCAGCTTTTGGCCAATCCACGCCAGCGTTTGGACAGTCAACACCAGCTTTTGGCCAAAGCACTCCTGCTTTTG
GGAGCAACCTGTTTTCTAGCAGCACATCATCATTGATGTCGCAGAGCAAACCAGCAGGCCTTGTACAAGCAACGGTATGTTCACATTCTCTAATATTTGCCATTGTATGAGCGATACTGAATTGGAGTTTGAAATCTCATTCCTCTAATGAGATGGATGCTCAGGGCATTTTTTTCAGTTTATAGGCACC
>TRINITY_DN103650_c0_g1_i1 from sample A3 / Example unspliced isoform:ATTATCAATTGGGAGACAAAGgtagcggaaaaatattttattattagtattattatcatctgcaagaatatggttgttttagcatggtcttgctcttgatttatgcactaattactaatagattgttgaagttgtgtttttcagGTGGCCCAAATACTGCAAGTCAACAACCTGCTGCAGGGGGAAGTATATTTTCTCAG
CCAGGACAGTCGAATCCCTTTGGTCAAACAACACCTGCCTTTGGTCAAACAACACCTGCCTTTGGTCAGACAAATGCCTTTGGTCAAGCATCTGCTCCAAATCCTTTTTCAGCGTCGTCGTCTTCCAGTCCTTTTGGTAATAAACCAGCAGGATTTGGTGGTAGCACATTTGCATCATCATCAGGTTCTGCATTTAATTC
ACCATTTGGGGCAACCTCCTCATCCTCCCCTTTTGGCACTGCTTCTTCAGCTCCATCTCTTTTTGGATCTTCAACAACATCAGCCTTTGGAGGGCCATCTTCTTCAACTCCTTTTGGAGCATCAAGCACACCTGCATTTGGTTCATCACCTTTTGGTCAACCATCTCAACCTGCATCTCTTTTTGGTTCAACCCCATCGT
TAGGGTCGGCTCCTGCATTTGGATCAAGCACACCTTTTGGAAGTACCCAGTCATCTGGATTGTTTCAATCTTCCACGTCGGCTTTTGGGCAATCCACACCGGCATTTGGCCAAACCACACCGACGTTTGGCCAATCCACACCAGCGTTTGGCCAATCCACACCAGCGTTTGGACAGTCAACTCCAGCTTTTGGCCAATCC
ACGCCAGCGTTTGGACAGTCAACACCAGCTTTTGGCCAAAGCACTCCTGCTTTTGGGAGCAACCTGTTTTCTAGCAGCACATCATCATTGATGTCGCAGAGCAAACCAGCAGGCCTTGTACAAGCAACG