sp|Q84L31|RD23C_ARATH ----> Ubiquitin receptor RAD23c

Intron 1 GTATATATTC ... TCCTTTACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	86.67	1	12	1
A2	25	3	1	1
A3	33.33	3	3	0
A4	42.86	2	2	1
A5	100	0	0	1
A6	60.71	11	22	12
A7	46.24	25	29	14
A8	36.11	23	18	8
A9	53.85	15	18	17
A10	42.03	20	23	6

>TRINITY_DN44022_c3_g2_i1 from sample A6 / Example spliced isoform

CCAGTTCATATGGAACATAAACATCCATTCCATTGATCAAACTAGGGCATTCATTAAGGCCGCTAGGGTATTGAGCTCTGCAACAACAAGAAGGTTTTGACAGTCGTTTAAGGAAACTCCTACCCTAGCCGCCATAACCACCCACCTTCATCCTTTCATTTCTTCTGTGAATTTTTCGGGCTCCTGAGGCAAGCATTCTT
CTTCAACGTTGAGGTTTGGAGGCGACCACAGGCCTTTCTTGGAAGCAGTGGCGGCAGCCCTTTCTTGACAGCTAAAGAAGATCATACATGGAAATGGAAGTGGTGGTGTTAGGGATACACAGTGGTGTTTTGGTGTGGAGAAGGTTGCAGATATTATTTGTAAGTGGAGGCGGTGGTTTCTCTTCAAGGAAGCGAAGGCG
GCAGACCTTAGGATGTCGAGGTTTCCTGCTGCGGACCTGTGCTTGATTGCTAGAGACTCTAGTGCCAAGTTGCTTCAATATATGGTGGAAGAACCCAATGACTTGCAAAGCCAATTTTTACAGCTTATTTAAGTACAGGAGCAAAGGGATTTATTGTGTAACAAGGTCCATCAATATCAAGACACGAAGAAAACCTTTTA
CGGGAAAGCCAGAGACAGGGCATTTAGTGAAGGGGTCCTGGTCTTGCTTTGGGACAAGAGGCGTGCATAGCGAAAAAAATCATGGGAAGTGCAATTACCCATGGCTGGGCCCTCACATCATTCATTCAACTAATAACAAGAATTATTTTGGGAGGTCTGAGCTGGGTGGAAAAATGTTGGATCTGCTTTCTAATGGGTAA
CACTTAAAAAATTTAATGGAGTACGATCAAGTCGACCATTGTACATACTATATTAGGTTCATGTAAATTCTATAATGTTTCCCTAAGTTTGCTTTGTATACATGTTTCTTTTTCGGTTGAAGTTTTGGGGAACCCTGGATCTTGAGCGTG

>TRINITY_DN44022_c3_g2_i2 from sample A6 / Example unspliced isoform:

CCAGTTCATATGGAACATAAACATCCATTCCATTGATCAAACTAGGGCATTCATTAAGGCCGCTAGGGTATTGAGCTCTGCAACAACAAGAAGGTTTTGACAGTCGTTTAAGGAAACTCCTACCCTAGCCGCCATAACCACCCACCTTCATCCTTTCATTTCTTCTGTGAATTTTTCGGGCTCCTGAGGCAAGCATTCTT
CTTCAACGTTGAGGTTTGGAGGCGACCACAGGCCTTTCTTGGAAGCAGTGGCGGCAGCCCTTTCTTGACAGCTAAAGAAGATCATACATGGAAATGGAAGTGGTGGTGTTAGGGATACACAGTGGTGTTTTGGTGTGGAGAAGGTTGCAGATATTATTTGTAAGTGGAGGCGGTGGTTTCTCTTCAAGGAAGCGAAGGCG
GCAGACCTTAGGATGTCGAGGTTTCCTGCTGCGGACCTGTGCTTGATTGgtatatattcatttccttgtgtttaccaatatcttaattttcaccgcagcatttttttttgtctcctataaaagttgggccttccattccaagttcatttttccattccctgtagttgtttttactgcacaaacttgtatatctcctttct
cgctagtgtaaggggtttatgtagtttttcctttacagCTAGAGACTCTAGTGCCAAGTTGCTTCAATATATGGTGGAAGAACCCAATGACTTGCAAAGCCAATTTTTACAGCTTATTTAAGTACAGGAGCAAAGGGATTTATTGTGTAACAAGGTCCATCAATATCAAGACACGAAGAAAACCTTTTACGGGAAAGCCA
GAGACAGGGCATTTAGTGAAGGGGTCCTGGTCTTGCTTTGGGACAAGAGGCGTGCATAGCGAAAAAAATCATGGGAAGTGCAATTACCCATGGCTGGGCCCTCACATCATTCATTCAACTAATAACAAGAATTATTTTGGGAGGTCTGAGCTGGGTGGAAAAATGTTGGATCTGCTTTCTAATGGGTAACACTTAAAAAA
TTTAATGGAGTACGATCAAGTCGACCATTGTACATACTATATTAGGTTCATGTAAATTCTATAATGTTTCCCTAAGTTTGCTTTGTATACATGTTTCTTTTTCGGTTGAAGTTTTGGGGAACCCTGGATCTTGAGCGTG

Intron 2 GTATATATTC ... TTAAGTACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	88.24	1	12	3
A2	50	1	1	1
A3	71.43	1	3	2
A4	20	4	2	0
A5	100	0	0	2
A6	61.29	12	22	16
A7	60.92	17	29	24
A8	53.33	14	18	14
A9	57.14	18	18	30
A10	52.81	21	23	24

>TRINITY_DN40480_c1_g1_i6 from sample A8 / Example spliced isoform

AACCAGTTCATATGGAACATAAACATCCATTCCATTGATCAAACTAGGGCATTCATTAAGGCCGCTAGGGTATTGAGCTCTGCAACAACAAGAAGGTTTTGACAGTCGTTTAAGGAAACTCCTACCCTAGCCGCCATAACCACCCACCTTCATCCTTTCATTTCTTCTGTGAATTTTTCGGGCTCCTGAGGCAAGCATTC
TTCTTCAACGTTGAGGTTTGGAGGCGACCACAGGCCTTTCTTGGAAGCAGTGGCGGCAGCCCTTTCTTGACAGCTAAAGAAGATCATACATGGAAATGGAAGTGGTGGTGTTAGGGATACACAGTGGTGTTTTGGTGTGGAGAAGGTTGCAGATATTATTTGTAAGTGGAGGCGGTGGTTTCTCTTCAAGGAAGCGAAGG
CGGCAGACCTTAGGATGTCGAGGTTTCCTGCTGCGGACCTGTGCTTGATTGGAGCAAAGGGATTTATTGTGTAACAAGGTCCATCAATATCAAGACACGAAGAAAACCTTTTACGGGAAAGCCAGAGACAGGGCATTTAGTGAAGGGGTCCTGGTCTTGCTTTGGGACAAGAGGCGTGCATAGCGAAAAAAATCATGGGA
AGTGCAATTACCCATGGCTGGGCCCTCACATCATTCATTCAACTAATAACAAGAATTATTTTGGGAGGTCTGAGCTGGGTGGAAAAATGTTGGATCTGCTTTCTAATGGGTAACACTTAAAAAATTTAATGGAGTACGATCAAGTCGACCATTGTACATACTATATTAGGTTCATGTAAATTCTATAATGTTTCCCTAAG
TTTGCTTTGTATACATGTTTCTTTTTCGGTTGAAGTTTTGGGGAACCCTGGATCTTGAGCGTAATAATAAAATTTACTAATCTTAAA

>TRINITY_DN40480_c1_g1_i15 from sample A8 / Example unspliced isoform:

AACCAGTTCATATGGAACATAAACATCCATTCCATTGATCAAACTAGGGCATTCATTAAGGCCGCTAGGGTATTGAGCTCTGCAACAACAAGAAGGTTTTGACAGTCGTTTAAGGAAACTCCTACCCTAGCCGCCATAACCACCCACCTTCATCCTTTCATTTCTTCTGTGAATTTTTCGGGCTCCTGAGGCAAGCATTC
TTCTTCAACGTTGAGGTTTGGAGGCGACCACAGGCCTTTCTTGGAAGCAGTGGCGGCAGCCCTTTCTTGACAGCTAAAGAAGATCATACATGGAAATGGAAGTGGTGGTGTTAGGGATACACAGTGGTGTTTTGGTGTGGAGAAGGTTGCAGATATTATTTGTAAGTGGAGGCGGTGGTTTCTCTTCAAGGAAGCGAAGG
CGGCAGACCTTAGGATGTCGAGGTTTCCTGCTGCGGACCTGTGCTTGATTGgtatatattcatttccttgtgtttaccaatatcttaattttcaccgcagcatttttttttgtctcctataaaagttgggccttccattccaagttcatttttccattccctgtagttgtttttactgcacaaacttgtatatctccttt
ctcgctagtgtaaggggtttatgtagtttttcctttacagctagagactctagtgccaagttgcttcaatatatggtggaagaacccaatgacttgcaaagccaatttttacagcttatttaagtacagGAGCAAAGGGATTTATTGTGTAACAAGGTCCATCAATATCAAGACACGAAGAAAACCTTTTACGGGAAAGC
CAGAGACAGGGCATTTAGTGAAGGGGTCCTGGTCTTGCTTTGGGACAAGAGGCGTGCATAGCGAAAAAAATCATGGGAAGTGCAATTACCCATGGCTGGGCCCTCACATCATTCATTCAACTAATAACAAGAATTATTTTGGGAGGTCTGAGCTGGGTGGAAAAATGTTGGATCTGCTTTCTAATGGGTAACACTTAAAA
AATTTAATGGAGTACGATCAAGTCGACCATTGTACATACTATATTAGGTTCATGTAAATTCTATAATGTTTCCCTAAGTTTGCTTTGTATACATGTTTCTTTTTCGGTTGAAGTTTTGGGGAACCCTGGATCTTGAGCGTAATAATAAAATTTACTAATCTTAAA

Intron 3 GTTAGCGCCC ... TCGTTGGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	51.58	46	1	49
A2	56.52	40	2	52
A3	52.2	76	9	83
A4	50.62	40	5	41
A5	50	36	4	36
A6	49.14	208	12	201
A7	52.27	147	12	161
A8	50.34	74	9	75
A9	49.87	193	19	192
A10	53.5	133	9	153

>TRINITY_DN40480_c1_g1_i12 from sample A8 / Example spliced isoform

CTCCCCGTCACGGCAATTAACTTTATGCTTTCCCTACCCGAACCCACCTCCAAGCACGTCAACAATCCGGTTAAAACCCTCCCGGACGTCACCTACGACCTCGGTTAACGAAGCTTATTGCATCGCAGAGCGCTCTTGAACGGAGATCTGTCTACTATAAAAACCAGATCGCAATCTCAATCACTCCCCGTCTTACTTCT
CTCCGGTAAACCACACCCTGAGTGCAAGGGATATTGTGTCTCGTTTTGCCTGCTGTGCGGAGGGATTTCGCATTTCGGAGGCCTGTAGAGACTGAATTCGGGCGTCAGGATGAAGGTTTCCGTCAAAACCTTGAAGGGTAACCACTTCGATCTCGAGGTGCAGCCCACGGATACTGTTTTAAATGTTAAGAAACAAATTG
AGCAAGTTCAAGGAGTGCAAACTTACCCAAGTGAACAGCAGTTACTGATATATCAGGGAAAAGGTGCTCAAGGATGAAACCACTATAGAAGAAAACAAAGTTTCTGAGAATACTTTCCTTGTGGTTATGCTGTCAAAGGATGACAAGTCAGCCTACCATGAATAGCAGCAGACCTGCTATTGTACAAATGAAAGGGTAGC
CTGTTGTTCAAAAAAGTGGCTGTTGCTCATGAGACAACTCTAGAATAATTTTTACTGCAACTGGTTTTGAAGAAGTGAAGTTGAAGATAATTGTATGTATTTTGGATCTCAGATAGGAAAACGTCTCTAGCTGTCGAGAGATAAACAATTGATAGACA

>TRINITY_DN40480_c1_g1_i13 from sample A8 / Example unspliced isoform:

CTCCCCGTCACGGCAATTAACTTTATGCTTTCCCTACCCGAACCCACCTCCAAGCACGTCAACAATCCGGTTAAAACCCTCCCGGACGTCACCTACGACCTCGGTTAACGAAGCTTATTGCATCGCAGAGCGCTCTTGAACGGAGATCTGTCTACTATAAAAACCAGATCGCAATCTCAATCACTCCCCGTCTTACTTCT
CTCCGGTAAACCACACCCTGAGgttagcgcccgtcagttaactgctggtccccctctctgtatatttttttccttttttctttcggtttttattttgtattggtttcgttggcagTGCAAGGGATATTGTGTCTCGTTTTGCCTGCTGTGCGGAGGGATTTCGCATTTCGGAGGCCTGTAGAGACTGAATTCGGGCGTCA
GGATGAAGGTTTCCGTCAAAACCTTGAAGGGTAACCACTTCGATCTCGAGGTGCAGCCCACGGATACTGTTTTAAATGTTAAGAAACAAATTGAGCAAGTTCAAGGAGTGCAAACTTACCCAAGTGAACAGCAGTTACTGATATATCAGGGAAAAGGTGCTCAAGGATGAAACCACTATAGAAGAAAACAAAGTTTCTGA
GAATACTTTCCTTGTGGTTATGCTGTCAAAGGATGACAAGTCAGCCTACCATGAATAGCAGCAGACCTGCTATTGTACAAATGAAAGGGTAGCCTGTTGTTCAAAAAAGTGGCTGTTGCTCATGAGACAACTCTAGAATAATTTTTACTGCAACTGGTTTTGAAGAAGTGAAGTTGAAGATAATTGTATGTATTTTGGAT
CTCAGATAGGAAAACGTCTCTAGCTGTCGAGAGATAAACAATTGATAGACA