sp|Q8LPJ4|AB2E_ARATH ----> ABC transporter E family member 2
Intron 1 GTCCTCCGCC ... GTTAGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 83.02 | 9 | 9 | 44 |
| A2 | 66.15 | 22 | 4 | 43 |
| A3 | 72.34 | 13 | 3 | 34 |
| A4 | 67.12 | 24 | 11 | 49 |
| A5 | 63.16 | 7 | 1 | 12 |
| A6 | 61.54 | 5 | 2 | 8 |
| A7 | 64.71 | 12 | 8 | 22 |
| A8 | 50 | 4 | 2 | 4 |
| A9 | 64.81 | 19 | 5 | 35 |
| A10 | 84.21 | 3 | 0 | 16 |
>TRINITY_DN42120_c0_g1_i3 from sample A9 / Example spliced isoformGTTTACAAAAAAAACACCAAGAAGCACCATTAGGTGTCATGATTTTTATTATTAAATAATAATGATGAGTGAAGCCTAAACATTTTTTTTTTCAAACATAGAAAATCCAAAGTATTTTTGACTTTAGAGTGCCGTCTAACCAGTGAAAATCCGGCATGGAGGTTGCGGGCATACTTTGGTGACATATGATTACAACAGTA
GGCTGTGAGTCTCCATTCGCACAAATTCCCATTCATCGTATATGCCAAGTAGCGTGGTAAGATGCAATTACTGTGGACAAAAATGGAAAGAGATATCTTTCTATGGAAAGCTCTTTTCTTGAATTCCCTGATCCACGTCACGTGAGTGTACTGTATGCAAATATCTATAGAATATTGATGTTGATATCATGGCGGTGGAA
TCGAATGATAGCCGGAGCAAAAGTAAAAGCATCGCAATTCAAAGGATAAGAGGGATCGAGTATAGTGAGAAAGCAGCCCAGCTTGTATTAGAAGAGGAGGAGAAGAAGCCGAGGCAGGGGAAACCTCCCTTATACAAGGACTTTATTTCAGGAAAGCTCTGCATAGAAGTTTCTTCTGCCTCTAAAATTGCGTTTATATC
AGAAGAGTTGTGCATTGGCTGTGGTATCTGTGTTAAGAAATGTCCATTTGATGCTATCCAGATCATTAACATACCCAAGGATTTAGAAAAAGATACAACACATCGATATGGGCCGAACACATTCAAGTTACATAGATTACCTGTACCAAAACCAGGACAGGTCTTGGGACTTGTTGGAACAAATGGTATAGGAAAGTCAA
CTGCACTCAAAGTGCTTGCTGGAAAACTGAAGCCCAACCTTGGCAGGTTCAATAACCCTCCTGATTGGCAGGAAATTCTTACACATTTCAGGGGATCAGAGCTACAGAATTATTTCACACGTATTTTAGAAGATAATCTGAAGGCTATAATCAAGCCTCAATATGTTGATCATATACCAAAAGCAGTGCAAGGGAATGTT
GGCCAGGTGCTTTCTCAAAAGGATGAAAGAGATATGAAGTCTGAGCTTTGCACTGATCTCGAATTGAATCAAGTTATTGATCGAAATGTTGATGAGTTATCTGGAGGAGAATTGCAGCGGTTTGCTATTGCAGTAGTTGCAGTTCAACATGCTGAGATATATATGTTTGATGAACCCTCAAGTTATCTTGATGTAAGGCA
ACGTCTTAAAGCTGCACTAGCAATCCGATCCTTGGTCAGGCCCAACAGCTACGTTATTGTTGTCGAGCATGATCTTAGTGTCCTTGATTATTTATCGGACTTCATTTGCTGTCTGTACGGGAAACCTGGGGTCTATGGTGTAGTAACGCTTCCATTTTCAGTCAGAGAAGGGATAAATATATTTTTGGCTGGTTTCGTGC
CTACTGAAAATCTTCGTTTTCGAGATGAATCACTTATGTTCAAGGTTGCAGAGGTTCCACAGGAAAGTGCAGAAGAGATAAAATCCTATGCACGCTACAAATACCCAAGTATGTCTAAAACACAGGGTAATTTCAAACTTCATGTAGAGGAAGGAGAATTCACTGATTCACAGATTGTTGTAATGTTGGGAGAAAATGGA
ACAGGAAAGACCACCTTCATACGCATGCTGGCTGGATTATTGAAACCAGATACAGTTGAAAACTCAGAGGTAGAGATACCTGAATTTAATGTGTCGTACAAGCCACAGAAGATCAGCCCAAAGTTTCAGAATACTGTAAGGATGTTATTACACCAAAAGATTCGAGACTCATACACTCATCCTCAATTCACATCTGATGT
CATGAAACCCCTCCAAATTGAGCAATTATTGGATCAGGAAGTTGTAAATCTTTCTGGTGGTGAATTGCAGAGAGTAGCGATATGCTTATGTCTTGGCAAGCCTGCAGATATTTATCTAATTGATGAGCCAAGTGCGTATTTAGATTCTGAACAGCGTATTGTGGCAGCAAAGGTCATAAAGCGATTTATTCTTCATGCCA
AGCAGACAGCTTTTGTTGTTGAGCATGATTTTATAATGGCAACATATTTGGCAGATAGGGTTATAGTATATGATGGGAAACCTTCCGTGGAGTGTACTGCCCATGCTCCGCAGAGTCTACAAACAGGAATGAACCTCTTTCTATCACACCTGGATATTACATTTAGACGAGATCCGACGAACTACAGGCCTCGTATAAAC
AAAGTAGATTCCACAAAGGACAGAGAACAGAAGAATGCAGGGACATATTATTATCTGGATGATTAATTCTTGTCACTCAGTATGTGATACACGTGAAAGGTCACGAGCCAACAAAATTACGCCTTCCTCTGTAGCGGCCAGTCTTTGAGAACTGGATTTTATCAAAAGCAATGGTGATGGATTTTCTTTGAGAACTGTAG
CTTGAATGAAACATTGGATTCGATAGAGGAGGCTTGGAGACTCGCAACTACACACTGATAATATTGAGGCAGTGGATTATGCTTCTTACAACTGTTTGTGTAGGGAGAGAAAGAGTGCCCTACAATGATTTTGCAGTAAAATGGAATGTAACATTTGAGGGTCTCTTTCTTTTAGTTAAATGTAGATTTAGTTTACCATG
GGACTTTGTAAACTCTAATTCTTGTACGCCAATGAGCTAAATGCATATTTTATAACGAGAGTGCATCCTATCGAGTATAAATGCTTTATTATAGGGACATGTTTATTTGTCTCTGCAACTTTCTCTTCTTTAGAGAAAAGCAACGTTAGAATATCGGGATCTAGATGGTTGAGTTAATAAAGTATCACAAGATATTGTAT
TGGCATACAGTCTTAACAGAGC
>TRINITY_DN42120_c0_g1_i4 from sample A9 / Example unspliced isoform:GTTTACAAAAAAAACACCAAGAAGCACCATTAGGTGTCATGATTTTTATTATTAAATAATAATGATGAGTGAAGCCTAAACATTTTTTTTTTCAAACATAGAAAATCCAAAGTATTTTTGACTTTAGAGTGCCGTCTAACCAGTGAAAATCCGGCATGGAGGTTGCGGGCATACTTTGGTGACATATGATTACAACAGTA
GGCTGTGAGTCTCCATTCGCACAAATTCCCATTCATCGTATATGCCAAGTAGCGTGGTAAGATGCAATTACTGTGGACAAAAATGGAAAGAGATATCTTTCTATGGAAAGCTCTTTTCTTGAATTCCCTGATCCACGTCACGTGAGTGTACTGTATGCAAATATCTATAGAATATTGATGTTGATATCATGGCGGTGGAA
TCGAATGATAGCCGGAGCAAAAGTAAAAGCATCGCAATTCAAAGGATAAGAGGGATCGAGTATAGTGAGAAAGCAGCCCAGCTTGTATTAGAAGAGGAGGAGAAGAAGCCGAGGCAGGGGAAACCTCCCTTATACAAGGACTTTATTTCAGgtcctccgccttgccttttgtttctcatgataatggtgacttgaaaaat
ggctgatcgccttacaagaattgctatagtgagttcagatcgctgcaaacccaagaaatgcagacaggagtgtaagaagagctgtccagttgttagaacagGAAAGCTCTGCATAGAAGTTTCTTCTGCCTCTAAAATTGCGTTTATATCAGAAGAGTTGTGCATTGGCTGTGGTATCTGTGTTAAGAAATGTCCATTTG
ATGCTATCCAGATCATTAACATACCCAAGGATTTAGAAAAAGATACAACACATCGATATGGGCCGAACACATTCAAGTTACATAGATTACCTGTACCAAAACCAGGACAGGTCTTGGGACTTGTTGGAACAAATGGTATAGGAAAGTCAACTGCACTCAAAGTGCTTGCTGGAAAACTGAAGCCCAACCTTGGCAGGTTC
AATAACCCTCCTGATTGGCAGGAAATTCTTACACATTTCAGGGGATCAGAGCTACAGAATTATTTCACACGTATTTTAGAAGATAATCTGAAGGCTATAATCAAGCCTCAATATGTTGATCATATACCAAAAGCAGTGCAAGGGAATGTTGGCCAGGTGCTTTCTCAAAAGGATGAAAGAGATATGAAGTCTGAGCTTTG
CACTGATCTCGAATTGAATCAAGTTATTGATCGAAATGTTGATGAGTTATCTGGAGGAGAATTGCAGCGGTTTGCTATTGCAGTAGTTGCAGTTCAACATGCTGAGATATATATGTTTGATGAACCCTCAAGTTATCTTGATGTAAGGCAACGTCTTAAAGCTGCACTAGCAATCCGATCCTTGGTCAGGCCCAACAGCT
ACGTTATTGTTGTCGAGCATGATCTTAGTGTCCTTGATTATTTATCGGACTTCATTTGCTGTCTGTACGGGAAACCTGGGGTCTATGGTGTAGTAACGCTTCCATTTTCAGTCAGAGAAGGGATAAATATATTTTTGGCTGGTTTCGTGCCTACTGAAAATCTTCGTTTTCGAGATGAATCACTTATGTTCAAGGTTGCA
GAGGTTCCACAGGAAAGTGCAGAAGAGATAAAATCCTATGCACGCTACAAATACCCAAGTATGTCTAAAACACAGGGTAATTTCAAACTTCATGTAGAGGAAGGAGAATTCACTGATTCACAGATTGTTGTAATGTTGGGAGAAAATGGAACAGGAAAGACCACCTTCATACGCATGCTGGCTGGATTATTGAAACCAGA
TACAGTTGAAAACTCAGAGGTAGAGATACCTGAATTTAATGTGTCGTACAAGCCACAGAAGATCAGCCCAAAGTTTCAGAATACTGTAAGGATGTTATTACACCAAAAGATTCGAGACTCATACACTCATCCTCAATTCACATCTGATGTCATGAAACCCCTCCAAATTGAGCAATTATTGGATCAGGAAGTTGTAAATC
TTTCTGGTGGTGAATTGCAGAGAGTAGCGATATGCTTATGTCTTGGCAAGCCTGCAGATATTTATCTAATTGATGAGCCAAGTGCGTATTTAGATTCTGAACAGCGTATTGTGGCAGCAAAGGTCATAAAGCGATTTATTCTTCATGCCAAGCAGACAGCTTTTGTTGTTGAGCATGATTTTATAATGGCAACATATTTG
GCAGATAGGGTTATAGTATATGATGGGAAACCTTCCGTGGAGTGTACTGCCCATGCTCCGCAGAGTCTACAAACAGGAATGAACCTCTTTCTATCACACCTGGATATTACATTTAGACGAGATCCGACGAACTACAGGCCTCGTATAAACAAAGTAGATTCCACAAAGGACAGAGAACAGAAGAATGCAGGGACATATTA
TTATCTGGATGATTAATTCTTGTCACTCAGTATGTGATACACGTGAAAGGTCACGAGCCAACAAAATTACGCCTTCCTCTGTAGCGGCCAGTCTTTGAGAACTGGATTTTATCAAAAGCAATGGTGATGGATTTTCTTTGAGAACTGTAGCTTGAATGAAACATTGGATTCGATAGAGGAGGCTTGGAGACTCGCAACTA
CACACTGATAATATTGAGGCAGTGGATTATGCTTCTTACAACTGTTTGTGTAGGGAGAGAAAGAGTGCCCTACAATGATTTTGCAGTAAAATGGAATGTAACATTTGAGGGTCTCTTTCTTTTAGTTAAATGTAGATTTAGTTTACCATGGGACTTTGTAAACTCTAATTCTTGTACGCCAATGAGCTAAATGCATATTT
TATAACGAGAGTGCATCCTATCGAGTATAAATGCTTTATTATAGGGACATGTTTATTTGTCTCTGCAACTTTCTCTTCTTTAGAGAAAAGCAACGTTAGAATATCGGGATCTAGATGGTTGAGTTAATAAAGTATCACAAGATATTGTATTGGCATACAGTCTTAACAGAGC
Intron 2 GTAAGGATGT ... TCTTGGCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 68.42 | 6 | 12 | 14 |
| A2 | 58.62 | 6 | 13 | 4 |
| A3 | 60 | 9 | 13 | 14 |
| A4 | 75 | 2 | 7 | 5 |
| A5 | 50 | 4 | 4 | 4 |
| A6 | 72.09 | 6 | 11 | 20 |
| A7 | 55.56 | 24 | 34 | 26 |
| A8 | 59.09 | 18 | 27 | 25 |
| A9 | 66.23 | 13 | 32 | 19 |
| A10 | 72.73 | 6 | 22 | 10 |
>TRINITY_DN44644_c0_g1_i11 from sample A7 / Example spliced isoformGAAAATCCAAAGTATTTTTGACTTTAGAGTGCCGTCTAACCAGTGAAAATCCGGCATGGAGGTTGCGGGCATACTTTGGTGACATATGATTACAACAGTAGGCTGTGAGTCTCCATTCGCACAAATTCCCATTCATCGTATATGCCAAGTAGCGTGGTAAGATGCAATTACTGTGGACAAAAATGGAAAGAGATATCTTT
CTATGGAAAGCTCTTTTCTTGAATTCCCTGATCCACGTCACGTGAGTGTACTGTATGCAAATATCTATAGAATATTGATGTTGATATCATGGCGGTGGAATCGAATGATAGCCGGAGCAAAAGTAAAAGCATCGCAATTCAAAGGATAAGAGGGATCGAGTATAGTGAGAAAGCAGCCCAGCTTGTATTAGAAGAGGAGG
AGAAGAAGCCGAGGCAGGGGAAACCTCCCTTATACAAGGACTTTATTTCAGGTCCTCCGCCTTGCCTTTTGTTTCTCATGATAATGTTTTATCTGTGAACGTTGCTTGCATTTGGAGCAGGTGACTTGAAAAATGGCTGATCGCCTTACAAGAATTGCTATAGTGAGTTCAGATCGCTGCAAACCCAAGAAATGCAGACA
GGAGTGTAAGAAGAGCTGTCCAGTTGTTAGAACAGGAAAGCTCTGCATAGAAGTTTCTTCTGCCTCTAAAATTGCGTTTATATCAGAAGAGTTGTGCATTGGCTGTGGTATCTGTGTTAAGAAATGTCCATTTGATGCTATCCAGATCATTAACATACCCAAGGATTTAGAAAAAGATACAACACATCGATATGGGCCGA
ACACATTCAAGTTACATAGATTACCTGTACCAAAACCAGGACAGGTCTTGGGACTTGTTGGAACAAATGGTATAGGAAAGTCAACTGCACTCAAAGTGCTTGCTGGAAAACTGAAGCCCAACCTTGGCAGGTTCAATAACCCTCCTGATTGGCAGGAAATTCTTACACATTTCAGGGGATCAGAGCTACAGAATTATTTC
ACACGTATTTTAGAAGATAATCTGAAGGCTATAATCAAGCCTCAATATGTTGATCATATACCAAAAGCAGTGCAAGGGAATGTTGGCCAGGTGCTTTCTCAAAAGGATGAAAGAGATATGAAGTCTGAGCTTTGCACTGATCTCGAATTGAATCAAGTTATTGATCGAAATGTTGATGAGTTATCTGGAGGAGAATTGCA
GCGGTTTGCTATTGCAGTAGTTGCAGTTCAACATGCTGAGATATATATGTTTGATGAACCCTCAAGTTATCTTGATGTAAGGCAACGTCTTAAAGCTGCACTAGCAATCCGATCCTTGGTCAGGCCCAACAGCTACGTTATTGTTGTCGAGCATGATCTTAGTGTCCTTGATTATTTATCGGACTTCATTTGCTGTCTGT
ACGGGAAACCTGGGGTCTATGGTGTAGTAACGCTTCCATTTTCAGTCAGAGAAGGGATAAATATATTTTTGGCTGGTTTCGTGCCTACTGAAAATCTTCGTTTTCGAGATGAATCACTTATGTTCAAGGTTGCAGAGGTTCCACAGGAAAGTGCAGAAGAGATAAAATCCTATGCACGCTACAAATACCCAAGTATGTCT
AAAACACAGGGTAATTTCAAACTTCATGTAGAGGAAGGAGAATTCACTGATTCACAGATTGTTGTAATGTTGGGAGAAAATGGAACAGGAAAGACCACCTTCATACGCATGCTGGCTGGATTATTGAAACCAGATACAGTTGAAAACTCAGAGGTAGAGATACCTGAATTTAATGTGTCGTACAAGCCACAGAAGATCAG
CCCAAAGTTTCAGAATACTCCTGCAGATATTTATCTAATTGATGAGCCAAGTGCGTATTTAGATTCTGAACAGCGTATTGTGGCAGCAAAGGTCATAAAGCGATTTATTCTTCATGCCAAGCAGACAGCTTTTGTTGTTGAGCATGATTTTATAATGGCAACATATTTGGCAGATAGGGTTATAGTATATGATGGGAAAC
CTTCCGTGGAGTGTACTGCCCATGCTCCGCAGAGTCTACAAACAGGAATGAACCTCTTTCTATCACACCTGGATATTACATTTAGACGAGATCCGACGAACTACAGGCCTCGTATAAACAAAGTAGATTCCACAAAGGACAGAGAACAGAAGAATGCAGGGACATATTATTATCTGGATGATTAATTCTTGTCACTCAGT
ATGTGATACACGTGAAAGGTCACGAGCCAACAAAATTACGCCTTCCTCTGTAGCGGCCAGTCTTTGAGAACTGGATTTTATCAAAAGCAATGGTGATGGATTTTCTTTGAGAACTGTAGCTTGAATGAAACATTGGATTCGATAGAGGAGGCTTGGAGACTCGCAACTACACACTGATAATATTGAGGCAGTGGATTATG
CTTCTTACAACTGTTTGTGTAGGGAGAGAAAGAGTGCCCTACAATGATTTTGCAGTAAAATGGAATGTAACATTTGAGGGTCTCTTTCTTTTAGTTAAATGTAGATTTAGTTTACCATGGGACTTTGTAAACTCTAATTCTTGTACGCCAATGAGCTAAATGCATATTTTATAACGAGAGTGCATCCTATCGAGTATAAA
TGCTTTATTATAGGGACATGTTTATTTGTCTCTGCAACTTTCTCTTCTTTAGAGAAAAGCAACGTTAGAATATCGGGATCTAGATGGTTGAGTTAATAAAGTATCACAAGATATTGTATTGGCATACAGTCTTAACAG
>TRINITY_DN44644_c0_g1_i1 from sample A7 / Example unspliced isoform:GAAAATCCAAAGTATTTTTGACTTTAGAGTGCCGTCTAACCAGTGAAAATCCGGCATGGAGGTTGCGGGCATACTTTGGTGACATATGATTACAACAGTAGGCTGTGAGTCTCCATTCGCACAAATTCCCATTCATCGTATATGCCAAGTAGCGTGGTAAGATGCAATTACTGTGGACAAAAATGGAAAGAGATATCTTT
CTATGGAAAGCTCTTTTCTTGAATTCCCTGATCCACGTCACGTGAGTGTACTGTATGCAAATATCTATAGAATATTGATGTTGATATCATGGCGGTGGAATCGAATGATAGCCGGAGCAAAAGTAAAAGCATCGCAATTCAAAGGATAAGAGGGATCGAGTATAGTGAGAAAGCAGCCCAGCTTGTATTAGAAGAGGAGG
AGAAGAAGCCGAGGCAGGGGAAACCTCCCTTATACAAGGACTTTATTTCAGTTTTATCTGTGAACGTTGCTTGCACAGTTTTATCTGTGAACGTTGCTTGCATTTGGAGCAGGTGACTTGAAAAATGGCTGATCGCCTTACAAGAATTGCTATAGTGAGTTCAGATCGCTGCAAACCCAAGAAATGCAGACAGGAGTGTA
AGAAGAGCTGTCCAGTTGTTAGAACAGGAAAGCTCTGCATAGAAGTTTCTTCTGCCTCTAAAATTGCGTTTATATCAGAAGAGTTGTGCATTGGCTGTGGTATCTGTGTTAAGAAATGTCCATTTGATGCTATCCAGATCATTAACATACCCAAGGATTTAGAAAAAGATACAACACATCGATATGGGCCGAACACATTC
AAGTTACATAGATTACCTGTACCAAAACCAGGACAGGTCTTGGGACTTGTTGGAACAAATGGTATAGGAAAGTCAACTGCACTCAAAGTGCTTGCTGGAAAACTGAAGCCCAACCTTGGCAGGTTCAATAACCCTCCTGATTGGCAGGAAATTCTTACACATTTCAGGGGATCAGAGCTACAGAATTATTTCACACGTAT
TTTAGAAGATAATCTGAAGGCTATAATCAAGCCTCAATATGTTGATCATATACCAAAAGCAGTGCAAGGGAATGTTGGCCAGGTGCTTTCTCAAAAGGATGAAAGAGATATGAAGTCTGAGCTTTGCACTGATCTCGAATTGAATCAAGTTATTGATCGAAATGTTGATGAGTTATCTGGAGGAGAATTGCAGCGGTTTG
CTATTGCAGTAGTTGCAGTTCAACATGCTGAGATATATATGTTTGATGAACCCTCAAGTTATCTTGATGTAAGGCAACGTCTTAAAGCTGCACTAGCAATCCGATCCTTGGTCAGGCCCAACAGCTACGTTATTGTTGTCGAGCATGATCTTAGTGTCCTTGATTATTTATCGGACTTCATTTGCTGTCTGTACGGGAAA
CCTGGGGTCTATGGTGTAGTAACGCTTCCATTTTCAGTCAGAGAAGGGATAAATATATTTTTGGCTGGTTTCGTGCCTACTGAAAATCTTCGTTTTCGAGATGAATCACTTATGTTCAAGGTTGCAGAGGTTCCACAGGAAAGTGCAGAAGAGATAAAATCCTATGCACGCTACAAATACCCAAGTATGTCTAAAACACA
GGGTAATTTCAAACTTCATGTAGAGGAAGGAGAATTCACTGATTCACAGATTGTTGTAATGTTGGGAGAAAATGGAACAGGAAAGACCACCTTCATACGCATGCTGGCTGGATTATTGAAACCAGATACAGTTGAAAACTCAGAGGTAGAGATACCTGAATTTAATGTGTCGTACAAGCCACAGAAGATCAGCCCAAAGT
TTCAGAATACTgtaaggatgttattacaccaaaagattcgagactcatacactcatcctcaattcacatctgatgtcatgaaacccctccaaattgagcaattattggatcaggaagttgtaaatctttctggtggtgaattgcagagagtagcgatatgcttatgtcttggcaagCCTGCAGATATTTATCTAATTGAT
GAGCCAAGTGCGTATTTAGATTCTGAACAGCGTATTGTGGCAGCAAAGGTCATAAAGCGATTTATTCTTCATGCCAAGCAGACAGCTTTTGTTGTTGAGCATGATTTTATAATGGCAACATATTTGGCAGATAGGGTTATAGTATATGATGGGAAACCTTCCGTGGAGTGTACTGCCCATGCTCCGCAGAGTCTACAAAC
AGGAATGAACCTCTTTCTATCACACCTGGATATTACATTTAGACGAGATCCGACGAACTACAGGCCTCGTATAAACAAAGTAGATTCCACAAAGGACAGAGAACAGAAGAATGCAGGGACATATTATTATCTGGATGATTAATTCTTGTCACTCAGTATGTGATACACGTGAAAGGTCACGAGCCAACAAAATTACGCCT
TCCTCTGTAGCGGCCAGTCTTTGAGAACTGGATTTTATCAAAAGCAATGGTGATGGATTTTCTTTGAGAACTGTAGCTTGAATGAAACATTGGATTCGATAGAGGAGGCTTGGAGACTCGCAACTACACACTGATAATATTGAGGCAGTGGATTATGCTTCTTACAACTGTTTGTGTAGGGAGAGAAAGAGTGCCCTACA
ATGATTTTGCAGTAAAATGGAATGTAACATTTGAGGGTCTCTTTCTTTTAGTTAAATGTAGATTTAGTTTACCATGGGACTTTGTAAACTCTAATTCTTGTACGCCAATGAGCTAAATGCATATTTTATAACGAGAGTGCATCCTATCGAGTATAAATGCTTTATTATAGGGACATGTTTATTTGTCTCTGCAACTTTCT
CTTCTTTAGAGAAAAGCAACGTTAGAATATCGGGATCTAGATGGTTGAGTTAATAAAGTATCACAAGATATTGTATTGGCATACAGTCTTAACAG
Intron 3 GTCCTCCGCC ... GTTAGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 83.02 | 9 | 10 | 44 |
| A2 | 66.15 | 22 | 4 | 43 |
| A3 | 72.34 | 13 | 3 | 34 |
| A4 | 67.12 | 24 | 8 | 49 |
| A5 | 63.16 | 7 | 1 | 12 |
| A6 | 61.54 | 5 | 2 | 8 |
| A7 | 64.71 | 12 | 8 | 22 |
| A8 | 50 | 4 | 2 | 4 |
| A9 | 64.81 | 19 | 3 | 35 |
| A10 | 84.21 | 3 | 0 | 16 |
>TRINITY_DN44644_c0_g1_i10 from sample A7 / Example spliced isoformGAAAATCCAAAGTATTTTTGACTTTAGAGTGCCGTCTAACCAGTGAAAATCCGGCATGGAGGTTGCGGGCATACTTTGGTGACATATGATTACAACAGTAGGCTGTGAGTCTCCATTCGCACAAATTCCCATTCATCGTATATGCCAAGTAGCGTGGTAAGATGCAATTACTGTGGACAAAAATGGAAAGAGATATCTTT
CTATGGAAAGCTCTTTTCTTGAATTCCCTGATCCACGTCACGTGAGTGTACTGTATGCAAATATCTATAGAATATTGATGTTGATATCATGGCGGTGGAATCGAATGATAGCCGGAGCAAAAGTAAAAGCATCGCAATTCAAAGGATAAGAGGGATCGAGTATAGTGAGAAAGCAGCCCAGCTTGTATTAGAAGAGGAGG
AGAAGAAGCCGAGGCAGGGGAAACCTCCCTTATACAAGGACTTTATTTCAGGAAAGCTCTGCATAGAAGTTTCTTCTGCCTCTAAAATTGCGTTTATATCAGAAGAGTTGTGCATTGGCTGTGGTATCTGTGTTAAGAAATGTCCATTTGATGCTATCCAGATCATTAACATACCCAAGGATTTAGAAAAAGATACAACA
CATCGATATGGGCCGAACACATTCAAGTTACATAGATTACCTGTACCAAAACCAGGACAGGTCTTGGGACTTGTTGGAACAAATGGTATAGGAAAGTCAACTGCACTCAAAGTGCTTGCTGGAAAACTGAAGCCCAACCTTGGCAGGTTCAATAACCCTCCTGATTGGCAGGAAATTCTTACACATTTCAGGGGATCAGA
GCTACAGAATTATTTCACACGTATTTTAGAAGATAATCTGAAGGCTATAATCAAGCCTCAATATGTTGATCATATACCAAAAGCAGTGCAAGGGAATGTTGGCCAGGTGCTTTCTCAAAAGGATGAAAGAGATATGAAGTCTGAGCTTTGCACTGATCTCGAATTGAATCAAGTTATTGATCGAAATGTTGATGAGTTAT
CTGGAGGAGAATTGCAGCGGTTTGCTATTGCAGTAGTTGCAGTTCAACATGCTGAGATATATATGTTTGATGAACCCTCAAGTTATCTTGATGTAAGGCAACGTCTTAAAGCTGCACTAGCAATCCGATCCTTGGTCAGGCCCAACAGCTACGTTATTGTTGTCGAGCATGATCTTAGTGTCCTTGATTATTTATCGGAC
TTCATTTGCTGTCTGTACGGGAAACCTGGGGTCTATGGTGTAGTAACGCTTCCATTTTCAGTCAGAGAAGGGATAAATATATTTTTGGCTGGTTTCGTGCCTACTGAAAATCTTCGTTTTCGAGATGAATCACTTATGTTCAAGGTTGCAGAGGTTCCACAGGAAAGTGCAGAAGAGATAAAATCCTATGCACGCTACAA
ATACCCAAGTATGTCTAAAACACAGGGTAATTTCAAACTTCATGTAGAGGAAGGAGAATTCACTGATTCACAGATTGTTGTAATGTTGGGAGAAAATGGAACAGGAAAGACCACCTTCATACGCATGCTGGCTGGATTATTGAAACCAGATACAGTTGAAAACTCAGAGGTAGAGATACCTGAATTTAATGTGTCGTACA
AGCCACAGAAGATCAGCCCAAAGTTTCAGAATACTGTAAGGATGTTATTACACCAAAAGATTCGAGACTCATACACTCATCCTCAATTCACATCTGATGTCATGAAACCCCTCCAAATTGAGCAATTATTGGATCAGGAAGTTGTAAATCTTTCTGGTGGTGAATTGCAGAGAGTAGCGATATGCTTATGTCTTGGCAAG
CCTGCAGATATTTATCTAATTGATGAGCCAAGTGCGTATTTAGATTCTGAACAGCGTATTGTGGCAGCAAAGGTCATAAAGCGATTTATTCTTCATGCCAAGCAGACAGCTTTTGTTGTTGAGCATGATTTTATAATGGCAACATATTTGGCAGATAGGGTTATAGTATATGATGGGAAACCTTCCGTGGAGTGTACTGC
CCATGCTCCGCAGAGTCTACAAACAGGAATGAACCTCTTTCTATCACACCTGGATATTACATTTAGACGAGATCCGACGAACTACAGGCCTCGTATAAACAAAGTAGATTCCACAAAGGACAGAGAACAGAAGAATGCAGGGACATATTATTATCTGGATGATTAATTCTTGTCACTCAGTATGTGATACACGTGAAAGG
TCACGAGCCAACAAAATTACGCCTTCCTCTGTAGCGGCCAGTCTTTGAGAACTGGATTTTATCAAAAGCAATGGTGATGGATTTTCTTTGAGAACTGTAGCTTGAATGAAACATTGGATTCGATAGAGGAGGCTTGGAGACTCGCAACTACACACTGATAATATTGAGGCAGTGGATTATGCTTCTTACAACTGTTTGTG
TAGGGAGAGAAAGAGTGCCCTACAATGATTTTGCAGTAAAATGGAATGTAACATTTGAGGGTCTCTTTCTTTTAGTTAAATGTAGATTTAGTTTACCATGGGACTTTGTAAACTCTAATTCTTGTACGCCAATGAGCTAAATGCATATTTTATAACGAGAGTGCATCCTATCGAGTATAAATGCTTTATTATAGGGACAT
GTTTATTTGTCTCTGCAACTTTCTCTTCTTTAGAGAAAAGCAACGTTAGAATATCGGGATCTAGATGGTTGAGTTAATAAAGTATCACAAGATATTGTATTGGCATACAGTCTTAACAG
>TRINITY_DN44644_c0_g1_i6 from sample A7 / Example unspliced isoform:GAAAATCCAAAGTATTTTTGACTTTAGAGTGCCGTCTAACCAGTGAAAATCCGGCATGGAGGTTGCGGGCATACTTTGGTGACATATGATTACAACAGTAGGCTGTGAGTCTCCATTCGCACAAATTCCCATTCATCGTATATGCCAAGTAGCGTGGTAAGATGCAATTACTGTGGACAAAAATGGAAAGAGATATCTTT
CTATGGAAAGCTCTTTTCTTGAATTCCCTGATCCACGTCACGTGAGTGTACTGTATGCAAATATCTATAGAATATTGATGTTGATATCATGGCGGTGGAATCGAATGATAGCCGGAGCAAAAGTAAAAGCATCGCAATTCAAAGGATAAGAGGGATCGAGTATAGTGAGAAAGCAGCCCAGCTTGTATTAGAAGAGGAGG
AGAAGAAGCCGAGGCAGGGGAAACCTCCCTTATACAAGGACTTTATTTCAGgtcctccgccttgccttttgtttctcatgataatggttttggttagttgatcaagatggttgtatcaaggttcaaatctccagagatagttttcgtcctttatggacaatctcaccctagccattcattctagttttatctgtgaacgt
tgcttgcatttggagcaggtgacttgaaaaatggctgatcgccttacaagaattgctatagtgagttcagatcgctgcaaacccaagaaatgcagacaggagtgtaagaagagctgtccagttgttagaacagGAAAGCTCTGCATAGAAGTTTCTTCTGCCTCTAAAATTGCGTTTATATCAGAAGAGTTGTGCATTGG
CTGTGGTATCTGTGTTAAGAAATGTCCATTTGATGCTATCCAGATCATTAACATACCCAAGGATTTAGAAAAAGATACAACACATCGATATGGGCCGAACACATTCAAGTTACATAGATTACCTGTACCAAAACCAGGACAGGTCTTGGGACTTGTTGGAACAAATGGTATAGGAAAGTCAACTGCACTCAAAGTGCTTG
CTGGAAAACTGAAGCCCAACCTTGGCAGGTTCAATAACCCTCCTGATTGGCAGGAAATTCTTACACATTTCAGGGGATCAGAGCTACAGAATTATTTCACACGTATTTTAGAAGATAATCTGAAGGCTATAATCAAGCCTCAATATGTTGATCATATACCAAAAGCAGTGCAAGGGAATGTTGGCCAGGTGCTTTCTCAA
AAGGATGAAAGAGATATGAAGTCTGAGCTTTGCACTGATCTCGAATTGAATCAAGTTATTGATCGAAATGTTGATGAGTTATCTGGAGGAGAATTGCAGCGGTTTGCTATTGCAGTAGTTGCAGTTCAACATGCTGAGATATATATGTTTGATGAACCCTCAAGTTATCTTGATGTAAGGCAACGTCTTAAAGCTGCACT
AGCAATCCGATCCTTGGTCAGGCCCAACAGCTACGTTATTGTTGTCGAGCATGATCTTAGTGTCCTTGATTATTTATCGGACTTCATTTGCTGTCTGTACGGGAAACCTGGGGTCTATGGTGTAGTAACGCTTCCATTTTCAGTCAGAGAAGGGATAAATATATTTTTGGCTGGTTTCGTGCCTACTGAAAATCTTCGTT
TTCGAGATGAATCACTTATGTTCAAGGTTGCAGAGGTTCCACAGGAAAGTGCAGAAGAGATAAAATCCTATGCACGCTACAAATACCCAAGTATGTCTAAAACACAGGGTAATTTCAAACTTCATGTAGAGGAAGGAGAATTCACTGATTCACAGATTGTTGTAATGTTGGGAGAAAATGGAACAGGAAAGACCACCTTC
ATACGCATGCTGGCTGGATTATTGAAACCAGATACAGTTGAAAACTCAGAGGTAGAGATACCTGAATTTAATGTGTCGTACAAGCCACAGAAGATCAGCCCAAAGTTTCAGAATACTGTAAGGATGTTATTACACCAAAAGATTCGAGACTCATACACTCATCCTCAATTCACATCTGATGTCATGAAACCCCTCCAAAT
TGAGCAATTATTGGATCAGGAAGTTGTAAATCTTTCTGGTGGTGAATTGCAGAGAGTAGCGATATGCTTATGTCTTGGCAAGCCTGCAGATATTTATCTAATTGATGAGCCAAGTGCGTATTTAGATTCTGAACAGCGTATTGTGGCAGCAAAGGTCATAAAGCGATTTATTCTTCATGCCAAGCAGACAGCTTTTGTTG
TTGAGCATGATTTTATAATGGCAACATATTTGGCAGATAGGGTTATAGTATATGATGGGAAACCTTCCGTGGAGTGTACTGCCCATGCTCCGCAGAGTCTACAAACAGGAATGAACCTCTTTCTATCACACCTGGATATTACATTTAGACGAGATCCGACGAACTACAGGCCTCGTATAAACAAAGTAGATTCCACAAAG
GACAGAGAACAGAAGAATGCAGGGACATATTATTATCTGGATGATTAATTCTTGTCACTCAGTATGTGATACACGTGAAAGGTCACGAGCCAACAAAATTACGCCTTCCTCTGTAGCGGCCAGTCTTTGAGAACTGGATTTTATCAAAAGCAATGGTGATGGATTTTCTTTGAGAACTGTAGCTTGAATGAAACATTGGA
TTCGATAGAGGAGGCTTGGAGACTCGCAACTACACACTGATAATATTGAGGCAGTGGATTATGCTTCTTACAACTGTTTGTGTAGGGAGAGAAAGAGTGCCCTACAATGATTTTGCAGTAAAATGGAATGTAACATTTGAGGGTCTCTTTCTTTTAGTTAAATGTAGATTTAGTTTACCATGGGACTTTGTAAACTCTAA
TTCTTGTACGCCAATGAGCTAAATGCATATTTTATAACGAGAGTGCATCCTATCGAGTATAAATGCTTTATTATAGGGACATGTTTATTTGTCTCTGCAACTTTCTCTTCTTTAGAGAAAAGCAACGTTAGAATATCGGGATCTAGATGGTTGAGTTAATAAAGTATCACAAGATATTGTATTGGCATACAGTCTTAACA
G
Intron 4 GTTAACTTGC ... AGTCTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.32 | 42 | 13 | 14 |
| A2 | 33.33 | 11 | 6 | 5 |
| A3 | 26.83 | 30 | 13 | 9 |
| A4 | 16.98 | 22 | 5 | 4 |
| A5 | 36.84 | 12 | 10 | 4 |
| A6 | 17.07 | 17 | 5 | 2 |
| A7 | 20 | 26 | 10 | 3 |
| A8 | 17.07 | 17 | 2 | 5 |
| A9 | 21.95 | 16 | 3 | 6 |
| A10 | 20 | 28 | 12 | 2 |
>TRINITY_DN113389_c0_g1_i2 from sample A3 / Example spliced isoformTTTTGACTTTAGAGTGCCGTCTAACCAGTGAAAATCCGGCATGGAGGTTGCGGGCATACTTTGGTGACATATGATTACAACAGTAGGCTGTGAGTCTCCATTCGCACAAATTCCCATTCATCGTATATGCCAAGTAGCGTGGTAAGATGCAATTACTGTGGACAAAAATGGAAAGAGATATCTTTCTATGGAAAGCTCTT
TTCTTGAATTCCCTGATCCACGTCACGTGAGTGTACTGTATGCAAATATCTATAGAATATTGATGTTGATATCATGGCGGTGGAATCGAATGATAGCCGGAGCAAAAGTAAAAGCATCGCAATTCAAAGGATAAGAGGGATCGAGTATAGTGAGAAAGCAGCCCAGCTTGTATTAGAAGAGGAGGAGAAGAAGCCGAGGC
AGGGGAAACCTCCCTTATACAAGGACTTTATTTCAGGAAAGCTCTGCATAGAAGTTTCTTCTGCCTCTAAAATTGCGTTTATATCAGAAGAGTTGTGCATTGGCTGTGGTATCTGTGTTAAGAAATGTCCATTTGATGCTATCCAGATCATTAACATACCCAAGGATTTAGAAAAAGATACAACACATCGATATGGGCCG
AACACATTCAAGTTACATAGATTACCTGTACCAAAACCAGGACAGGTCTTGGGACTTGTTGGAACAAATGGTATAGGAAAGTCAACTGCACTCAAAGTGCTTGCTGGAAAACTGAAGCCCAACCTTGGCAGGTTCAATAACCCTCCTGATTGGCAGGAAATTCTTACACATTTCAGGGGATCAGAGCTACAGAATTATTT
CACACGTATTTTAGAAGATAATCTGAAGGCTATAATCAAGCCTCAATATGTTGATCATATACCAAAAGCAGTGCAAGGGAATGTTGGCCAGGTGCTTTCTCAAAAGGATGAAAGAGATATGAAGTCTGAGCTTTGCACTGATCTCGAATTGAATCAAGTTATTGATCGAAATGTTGATGAGTTATCTGGAGGAGAATTGC
AGCGGTTTGCTATTGCAGTAGTTGCAGTTCAACATGCTGAGATATATATGTTTGATGAACCCTCAAGTTATCTTGATGTAAGGCAACGTCTTAAAGCTGCACTAGCAATCCGATCCTTGGTCAGGCCCAACAGCTACGTTATTGTTGTCGAGCATGATCTTAGTGTCCTTGATTATTTATCGGACTTCATTTGCTGTCTG
TACGGGAAACCTGGGGTCTATGGTGTAGTAACGCTTCCATTTTCAGTCAGAGAAGGGATAAATATATTTTTGGCTGGTTTCGTGCCTACTGAAAATCTTCGTTTTCGAGATGAATCACTTATGTTCAAGGTTGCAGAGGTTCCACAGGAAAGTGCAGAAGAGATAAAATCCTATGCACGCTACAAATACCCAAGTATGTC
TAAAACACAGGGTAATTTCAAACTTCATGTAGAGGAAGGAGAATTCACTGATTCACAGATTGTTGTAATGTTGGGAGAAAATGGAACAGGAAAGACCACCTTCATACGCATGCTGGCTGGATTATTGAAACCAGATACAGTTGAAAACTCAGAGGTAGAGATACCTGAATTTAATGTGTCGTACAAGCCACAGAAGATCA
GCCCAAAGTTTCAGAATACTGTAAGGATGTTATTACACCAAAAGATTCGAGACTCATACACTCATCCTCAATTCACATCTGATGTCATGAAACCCCTTCAGATTGAACAACTAATGGATCAAGAAGTAGTAAATCTTTCTGGTGGAGAATTACAGAGAGTGGCATTGTGCTTATGCCTCGGCAAG
>TRINITY_DN113389_c0_g1_i3 from sample A3 / Example unspliced isoform:GTTTGCTTATTATTTAGTTTCCTTCAATTGTTACTGATGGCAGAATATTTTAATTTGTCAGCTACGTTATTGTTGTCGAGCATGATCTTAGTGTCCTTGATTATTTATCGGACTTCATTTGCTGTCTGTACGGGAAACCTGGGGTCTATGGTGTAGTAACGCTTCCATTTTCAGTCAGAGAAGGGATAAATATATTTTTG
GCTGGTTTCGTGCCTACTGAAAATCTTCGTTTTCGAGATGAATCACTTATGTTCAAGgttaacttgctttagcttcatgcaatcttgacattctttccttcctctataatgaactcatcaatgacttttagtctggcagGTTGCAGAGGTTCCACAGGAAAGTGCAGAAGAGATAAAATCCTATGCACGCTACAAATACC
CAAGTATGTCTAAAACACAGGGTAATTTCAAACTTCATGTAGAGGAAGGAGAATTCACTGATTCACAGATTGTTGTAATGTTGGGAGAAAATGGAACAGGAAAGACCACCTTCATACGCATGCTGGCTGGATTATTGAAACCAGATACAGTTGAAAACTCAGAGGTAGAGATACCTGAATTTAATGTGTCGTACAAGCCA
CAGAAGATCAGCCCAAAGTTTCAGAATACTGTAAGGATGTTATTACACCAAAAGATTCGAGACTCATACACTCATCCTCAATTCACATCTGATGTCATGAAACCCCTTCAGATTGAACAACTAATGGATCAAGAAGTAGTAAATCTTTCTGGTGGAGAATTACAGAGAGTGGCATTGTGCTTATGCCTCGGCAAG
Intron 5 GTCCTCCGCC ... GTTAGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 77.78 | 9 | 19 | 44 |
| A2 | 54.17 | 22 | 9 | 43 |
| A3 | 65.33 | 13 | 15 | 34 |
| A4 | 58.26 | 24 | 18 | 49 |
| A5 | 56.25 | 7 | 6 | 12 |
| A6 | 54.55 | 5 | 4 | 8 |
| A7 | 58.62 | 12 | 12 | 22 |
| A8 | 46.67 | 4 | 3 | 4 |
| A9 | 52.5 | 19 | 7 | 35 |
| A10 | 78.57 | 3 | 6 | 16 |
>TRINITY_DN113389_c0_g1_i2 from sample A3 / Example spliced isoformTTTTGACTTTAGAGTGCCGTCTAACCAGTGAAAATCCGGCATGGAGGTTGCGGGCATACTTTGGTGACATATGATTACAACAGTAGGCTGTGAGTCTCCATTCGCACAAATTCCCATTCATCGTATATGCCAAGTAGCGTGGTAAGATGCAATTACTGTGGACAAAAATGGAAAGAGATATCTTTCTATGGAAAGCTCTT
TTCTTGAATTCCCTGATCCACGTCACGTGAGTGTACTGTATGCAAATATCTATAGAATATTGATGTTGATATCATGGCGGTGGAATCGAATGATAGCCGGAGCAAAAGTAAAAGCATCGCAATTCAAAGGATAAGAGGGATCGAGTATAGTGAGAAAGCAGCCCAGCTTGTATTAGAAGAGGAGGAGAAGAAGCCGAGGC
AGGGGAAACCTCCCTTATACAAGGACTTTATTTCAGGAAAGCTCTGCATAGAAGTTTCTTCTGCCTCTAAAATTGCGTTTATATCAGAAGAGTTGTGCATTGGCTGTGGTATCTGTGTTAAGAAATGTCCATTTGATGCTATCCAGATCATTAACATACCCAAGGATTTAGAAAAAGATACAACACATCGATATGGGCCG
AACACATTCAAGTTACATAGATTACCTGTACCAAAACCAGGACAGGTCTTGGGACTTGTTGGAACAAATGGTATAGGAAAGTCAACTGCACTCAAAGTGCTTGCTGGAAAACTGAAGCCCAACCTTGGCAGGTTCAATAACCCTCCTGATTGGCAGGAAATTCTTACACATTTCAGGGGATCAGAGCTACAGAATTATTT
CACACGTATTTTAGAAGATAATCTGAAGGCTATAATCAAGCCTCAATATGTTGATCATATACCAAAAGCAGTGCAAGGGAATGTTGGCCAGGTGCTTTCTCAAAAGGATGAAAGAGATATGAAGTCTGAGCTTTGCACTGATCTCGAATTGAATCAAGTTATTGATCGAAATGTTGATGAGTTATCTGGAGGAGAATTGC
AGCGGTTTGCTATTGCAGTAGTTGCAGTTCAACATGCTGAGATATATATGTTTGATGAACCCTCAAGTTATCTTGATGTAAGGCAACGTCTTAAAGCTGCACTAGCAATCCGATCCTTGGTCAGGCCCAACAGCTACGTTATTGTTGTCGAGCATGATCTTAGTGTCCTTGATTATTTATCGGACTTCATTTGCTGTCTG
TACGGGAAACCTGGGGTCTATGGTGTAGTAACGCTTCCATTTTCAGTCAGAGAAGGGATAAATATATTTTTGGCTGGTTTCGTGCCTACTGAAAATCTTCGTTTTCGAGATGAATCACTTATGTTCAAGGTTGCAGAGGTTCCACAGGAAAGTGCAGAAGAGATAAAATCCTATGCACGCTACAAATACCCAAGTATGTC
TAAAACACAGGGTAATTTCAAACTTCATGTAGAGGAAGGAGAATTCACTGATTCACAGATTGTTGTAATGTTGGGAGAAAATGGAACAGGAAAGACCACCTTCATACGCATGCTGGCTGGATTATTGAAACCAGATACAGTTGAAAACTCAGAGGTAGAGATACCTGAATTTAATGTGTCGTACAAGCCACAGAAGATCA
GCCCAAAGTTTCAGAATACTGTAAGGATGTTATTACACCAAAAGATTCGAGACTCATACACTCATCCTCAATTCACATCTGATGTCATGAAACCCCTTCAGATTGAACAACTAATGGATCAAGAAGTAGTAAATCTTTCTGGTGGAGAATTACAGAGAGTGGCATTGTGCTTATGCCTCGGCAAG
>TRINITY_DN113389_c0_g1_i1 from sample A3 / Example unspliced isoform:TTTTGACTTTAGAGTGCCGTCTAACCAGTGAAAATCCGGCATGGAGGTTGCGGGCATACTTTGGTGACATATGATTACAACAGTAGGCTGTGAGTCTCCATTCGCACAAATTCCCATTCATCGTATATGCCAAGTAGCGTGGTAAGATGCAATTACTGTGGACAAAAATGGAAAGAGATATCTTTCTATGGAAAGCTCTT
TTCTTGAATTCCCTGATCCACGTCACGTGAGTGTACTGTATGCAAATATCTATAGAATATTGATGTTGATATCATGGCGGTGGAATCGAATGATAGCCGGAGCAAAAGTAAAAGCATCGCAATTCAAAGGATAAGAGGGATCGAGTATAGTGAGAAAGCAGCCCAGCTTGTATTAGAAGAGGAGGAGAAGAAGCCGAGGC
AGGGGAAACCTCCCTTATACAAGGACTTTATTTCAGgtcctccgccttgccttttgtttctcatgataatgttttatctgtgaacgttgcttgcatttggagcaggtgacttgaaaaatggctgatcgccttacaagaattgctatagtgagttcagatcgctgcaaacccaagaaatgcagacaggagtgtaagaagag
ctgtccagttgttagaacagGAAAGCTCTGCATAGAAGTTTCTTCTGCCTCTAAAATTGCGTTTATATCAGAAGAGTTGTGCATTGGCTGTGGTATCTGTGTTAAGAAATGTCCATTTGATGCTATCCAGATCATTAACATACCCAAGGATTTAGAAAAAGATACAACACATCGATATGGGCCGAACACATTCAAGTTAC
ATAGATTACCTGTACCAAAACCAGGACAGGTCTTGGGACTTGTTGGAACAAATGGTATAGGAAAGTCAACTGCACTCAAAGTGCTTGCTGGAAAACTGAAGCCCAACCTTGGCAGGTTCAATAACCCTCCTGATTGGCAGGAAATTCTTACACATTTCAGGGGATCAGAGCTACAGAATTATTTCACACGTATTTTAGAA
GATAATCTGAAGGCTATAATCAAGCCTCAATATGTTGATCATATACCAAAAGCAGTGCAAGGGAATGTTGGCCAGGTGCTTTCTCAAAAGGATGAAAGAGATATGAAGTCTGAGCTTTGCACTGATCTCGAATTGAATCAAGTTATTGATCGAAATGTTGATGAGTTATCTGGAGGAGAATTGCAGCGGTTTGCTATTGC
AGTAGTTGCAGTTCAACATGCTGAGATATATATGTTTGATGAACCCTCAAGTTATCTTGATGTAAGGCAACGTCTTAAAGCTGCACTAGCAATCCGATCCTTGGTCAGGCCCAACAGCTACGTTATTGTTGTCGAGCATGATCTTAGTGTCCTTGATTATTTATCGGACTTCATTTGCTGTCTGTACGGGAAACCTGGGG
TCTATGGTGTAGTAACGCTTCCATTTTCAGTCAGAGAAGGGATAAATATATTTTTGGCTGGTTTCGTGCCTACTGAAAATCTTCGTTTTCGAGATGAATCACTTATGTTCAAGGTT
Intron 6 GTCCTCCGCC ... GTTAGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 77.78 | 9 | 19 | 44 |
| A2 | 54.17 | 22 | 9 | 43 |
| A3 | 63.89 | 13 | 12 | 34 |
| A4 | 58.26 | 24 | 18 | 49 |
| A5 | 53.33 | 7 | 4 | 12 |
| A6 | 54.55 | 5 | 4 | 8 |
| A7 | 58.62 | 12 | 12 | 22 |
| A8 | 46.67 | 4 | 3 | 4 |
| A9 | 52.5 | 19 | 7 | 35 |
| A10 | 75 | 3 | 2 | 16 |
>TRINITY_DN113687_c0_g2_i10 from sample A2 / Example spliced isoformGAAAATCCAAAGTATTTTTGACTTTAGAGTGCCGTCTAACCAGTGAAAATCCGGCATGGAGGTTGCGGGCATACTTTGGTGACATATGATTACAACAGTAGGCTGTGAGTCTCCATTCGCACAAATTCCCATTCATCGTATATGCCAAGTAGCGTGGTAAGATGCAATTACTGTGGACAAAAATGGAAAGAGATATCTTT
CTATGGAAAGCTCTTTTCTTGAATTCCCTGATCCACGTCACGTGAGTGTACTGTATGCAAATATCTATAGAATATTGATGTTGATATCATGGCGGTGGAATCGAATGATAGCCGGAGCAAAAGTAAAAGCATCGCAATTCAAAGGATAAGAGGGATCGAGTATAGTGAGAAAGCAGCCCAGCTTGTATTAGAAGAGGAGG
AGAAGAAGCCGAGGCAGGGGAAACCTCCCTTATACAAGGACTTTATTTCAGGAAAGCTCTGCATAGAAGTTTCTTCTGCCTCTAAAATTGCGTTTATATCAGAAGAGTTGTGCATTGGCTGTGGTATCTGTGTTAAGAAATGTCCATTTGATGCTATCCAGATCATTAACATACCCAAGGATTTAGAAAAAGATACAACA
CATCGATATGGGCCGAACACATTCAAGTTACATAGATTACCTGTACCAAAACCAGGACAGGTCTTGGGACTTGTTGGAACAAATGGTATAGGAAAGTCAACTGCACTCAAAGTGCTTGCTGGAAAACTGAAGCCCAACCTTGGCAGGTTCAATAACCCTCCTGATTGGCAGGAAATTCTTACACATTTCAGGGGATCAGA
GCTACAGAATTATTTCACACGTATTTTAGAAGATAATCTGAAGGCTATAATCAAGCCTCAATATGTTGATCATATACCAAAAGCAGTGCAAGGGAATGTTGGCCAGGTGCTTTCTCAAAAGGATGAAAGAGATATGAAGTCTGAGCTTTGCACTGATCTCGAATTGAATCAAGTTATTGATCGAAATGTTGATGAGTTAT
CTGGAGGAGAATTGCAGCGGTTTGCTATTGCAGTAGTTGCAGTTCAACATGCTGAGATATATATGTTTGATGAACCCTCAAGTTATCTTGATGTAAGGCAACGTCTTAAAGCTGCACTAGCAATCCGATCCTTGGTCAGGCCCAACAGCTACGTTATTGTTGTCGAGCATGATCTTAGTGTCCTTGATTATTTATCGGAC
TTCATTTGCTGTCTGTACGGGAAACCTGGGGTCTATGGTGTAGTAACGCTTCCATTTTCAGTCAGAGAAGGGATAAATATATTTTTGGCTGGTTTCGTGCCTACTGAAAATCTTCGTTTTCGAGATGAATCACTTATGTTCAAGGTTGCAGAGGTTCCACAGGAAAGTGCAGAAGAGATAAAATCCTATGCACGCTACAA
ATACCCAAGTATGTCTAAAACACAGGGTAATTTCAAACTTCATGTAGAGGAAGGAGAATTCACTGATTCACAGATTGTTGTAATGTTGGGAGAAAATGGAACAGGAAAGACCACCTTCATACGCATGCTGGCTGGATTATTGAAACCAGATACAGTTGAAAACTCAGAGGTAGAGATACCTGAATTTAATGTGTCGTACA
AGCCACAGAAGATCAGCCCAAAGTTTCAGAATACTGTAAGGATGTTATTACACCAAAAGATTCGAGACTCATACACTCATCCTCAATTCACATCTGATGTCATGAAACCCCTCCAAATTGAGCAATTATTGGATCAGGAAGTTGTAAATCTTTCTGGTGGTGAATTGCAGAGAGTAGCGATATGCTTATGTCTTGGCAAG
CCTGCAGATATTTATCTAATTGATGAGCCAAGTGCGTATTTAGATTCTGAACAGCGTATTGTGGCAGCAAAGGTCATAAAGCGATTTATTCTTCATGCCAAGCAGACAGCTTTTGTTGTTGAGCATGATTTTATAATGGCAACATATTTGGCAGATAGGGTTATAGTATATGATGGGAAACCTTCCGTGGAGTGTACTGC
CCATGCTCCGCAGAGTCTACAAACAGGAATGAACCTCTTTCTATCACACCTGGATATTACATTTAGACGAGATCCGACGAACTACAGGCCTCGTATAAACAAAGTAGATTCCACAAAGGACAGAGAACAGAAGAATGCAGGGACATATTATTATCTGGATGATTAATTCTTGTCACTCAGTATGTGATACACGTGAAAGG
TCACGAGCCAACAAAATTACGCCTTCCTCTGTAGCGGCCAGTCTTTGAGAACTGGATTTTATCAAAAGCAATGGTGATGGATTTTCTTTGAGAACTGTAGCTTGAATGAAACATTGGATTCGATAGAGGAGGCTTGGAGACTCGCAACTACACACTGATAATATTGAGGCAGTGGATTATGCTTCTTACAACTGTTTGTG
TAGGGAGAGAAAGAGTGCCCTACAATGATTTTGCAGTAAAATGGAATGTAACATTTGAGGGTCTCTTTCTTTTAGTTAAATGTAGATTTAGTTTACCATGGGACTTTGTAAACTCTAATTCTTGTACGCCAATGAGCTAAATGCATATTTTATAACGAGAGTGCATCCTATCGAGTATAAATGCTTTATTATAGGGACAT
GTTTATTTGTCTCTGCAACTTTCTCTTCTTTAGAGAAAAGCAACGTTAGAATATCGGGATCTAGATGGTTGAGTTAATAAAGTATCACAAGATATTGTATTGGCA
>TRINITY_DN113687_c0_g2_i11 from sample A2 / Example unspliced isoform:GAAAATCCAAAGTATTTTTGACTTTAGAGTGCCGTCTAACCAGTGAAAATCCGGCATGGAGGTTGCGGGCATACTTTGGTGACATATGATTACAACAGTAGGCTGTGAGTCTCCATTCGCACAAATTCCCATTCATCGTATATGCCAAGTAGCGTGGTAAGATGCAATTACTGTGGACAAAAATGGAAAGAGATATCTTT
CTATGGAAAGCTCTTTTCTTGAATTCCCTGATCCACGTCACGTGAGTGTACTGTATGCAAATATCTATAGAATATTGATGTTGATATCATGGCGGTGGAATCGAATGATAGCCGGAGCAAAAGTAAAAGCATCGCAATTCAAAGGATAAGAGGGATCGAGTATAGTGAGAAAGCAGCCCAGCTTGTATTAGAAGAGGAGG
AGAAGAAGCCGAGGCAGGGGAAACCTCCCTTATACAAGGACTTTATTTCAGgtcctccgccttgccttttgtttctcatgataatgttttatctgtgaacgttgcttgcacagttttatctgtgaacgttgcttgcatttggagcaggtgacttgaaaaatggctgatcgccttacaagaattgctatagtgagttcaga
tcgctgcaaacccaagaaatgcagacaggagtgtaagaagagctgtccagttgttagaacagGAAAGCTCTGCATAGAAGTTTCTTCTGCCTCTAAAATTGCGTTTATATCAGAAGAGTTGTGCATTGGCTGTGGTATCTGTGTTAAGAAATGTCCATTTGATGCTATCCAGATCATTAACATACCCAAGGATTTAGAAA
AAGATACAACACATCGATATGGGCCGAACACATTCAAGTTACATAGATTACCTGTACCAAAACCAGGACAGGTCTTGGGACTTGTTGGAACAAATGGTATAGGAAAGTCAACTGCACTCAAAGTGCTTGCTGGAAAACTGAAGCCCAACCTTGGCAGGTTCAATAACCCTCCTGATTGGCAGGAAATTCTTACACATTTC
AGGGGATCAGAGCTACAGAATTATTTCACACGTATTTTAGAAGATAATCTGAAGGCTATAATCAAGCCTCAATATGTTGATCATATACCAAAAGCAGTGCAAGGGAATGTTGGCCAGGTGCTTTCTCAAAAGGATGAAAGAGATATGAAGTCTGAGCTTTGCACTGATCTCGAATTGAATCAAGTTATTGATCGAAATGT
TGATGAGTTATCTGGAGGAGAATTGCAGCGGTTTGCTATTGCAGTAGTTGCAGTTCAACATGCTGAGATATATATGTTTGATGAACCCTCAAGTTATCTTGATGTAAGGCAACGTCTTAAAGCTGCACTAGCAATCCGATCCTTGGTCAGGCCCAACAGCTACGTTATTGTTGTCGAGCATGATCTTAGTGTCCTTGATT
ATTTATCGGACTTCATTTGCTGTCTGTACGGGAAACCTGGGGTCTATGGTGTAGTAACGCTTCCATTTTCAGTCAGAGAAGGGATAAATATATTTTTGGCTGGTTTCGTGCCTACTGAAAATCTTCGTTTTCGAGATGAATCACTTATGTTCAAGGTTGCAGAGGTTCCACAGGAAAGTGCAGAAGAGATAAAATCCTAT
GCACGCTACAAATACCCAAGTATGTCTAAAACACAGGGTAATTTCAAACTTCATGTAGAGGAAGGAGAATTCACTGATTCACAGATTGTTGTAATGTTGGGAGAAAATGGAACAGGAAAGACCACCTTCATACGCATGCTGGCTGGATTATTGAAACCAGATACAGTTGAAAACTCAGAGGTAGAGATACCTGAATTTAA
TGTGTCGTACAAGCCACAGAAGATCAGCCCAAAGTTTCAGAATACTGTAAGGATGTTATTACACCAAAAGATTCGAGACTCATACACTCATCCTCAATTCACATCTGATGTCATGAAACCCCTCCAAATTGAGCAATTATTGGATCAGGAAGTTGTAAATCTTTCTGGTGGTGAATTGCAGAGAGTAGCGATATGCTTAT
GTCTTGGCAAGCCTGCAGATATTTATCTAATTGATGAGCCAAGTGCGTATTTAGATTCTGAACAGCGTATTGTGGCAGCAAAGGTCATAAAGCGATTTATTCTTCATGCCAAGCAGACAGCTTTTGTTGTTGAGCATGATTTTATAATGGCAACATATTTGGCAGATAGGGTTATAGTATATGATGGGAAACCTTCCGTG
GAGTGTACTGCCCATGCTCCGCAGAGTCTACAAACAGGAATGAACCTCTTTCTATCACACCTGGATATTACATTTAGACGAGATCCGACGAACTACAGGCCTCGTATAAACAAAGTAGATTCCACAAAGGACAGAGAACAGAAGAATGCAGGGACATATTATTATCTGGATGATTAATTCTTGTCACTCAGTATGTGATA
CACGTGAAAGGTCACGAGCCAACAAAATTACGCCTTCCTCTGTAGCGGCCAGTCTTTGAGAACTGGATTTTATCAAAAGCAATGGTGATGGATTTTCTTTGAGAACTGTAGCTTGAATGAAACATTGGATTCGATAGAGGAGGCTTGGAGACTCGCAACTACACACTGATAATATTGAGGCAGTGGATTATGCTTCTTAC
AACTGTTTGTGTAGGGAGAGAAAGAGTGCCCTACAATGATTTTGCAGTAAAATGGAATGTAACATTTGAGGGTCTCTTTCTTTTAGTTAAATGTAGATTTAGTTTACCATGGGACTTTGTAAACTCTAATTCTTGTACGCCAATGAGCTAAATGCATATTTTATAACGAGAGTGCATCCTATCGAGTATAAATGCTTTAT
TATAGGGACATGTTTATTTGTCTCTGCAACTTTCTCTTCTTTAGAGAAAAGCAACGTTAGAATATCGGGATCTAGATGGTTGAGTTAATAAAGTATCACAAGATATTGTATTGGCA
Intron 7 GTCCTCCGCC ... GCTTGCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 68 | 8 | 19 | 15 |
| A2 | 68 | 4 | 9 | 8 |
| A3 | 60 | 8 | 12 | 12 |
| A4 | 59.26 | 11 | 18 | 14 |
| A5 | 37.93 | 9 | 4 | 7 |
| A6 | 50 | 5 | 4 | 6 |
| A7 | 55 | 9 | 12 | 10 |
| A8 | 45.45 | 3 | 3 | 2 |
| A9 | 44.83 | 8 | 7 | 6 |
| A10 | 53.85 | 3 | 2 | 5 |
>TRINITY_DN113687_c0_g2_i5 from sample A2 / Example spliced isoformGAAAATCCAAAGTATTTTTGACTTTAGAGTGCCGTCTAACCAGTGAAAATCCGGCATGGAGGTTGCGGGCATACTTTGGTGACATATGATTACAACAGTAGGCTGTGAGTCTCCATTCGCACAAATTCCCATTCATCGTATATGCCAAGTAGCGTGGTAAGATGCAATTACTGTGGACAAAAATGGAAAGAGATATCTTT
CTATGGAAAGCTCTTTTCTTGAATTCCCTGATCCACGTCACGTGAGTGTACTGTATGCAAATATCTATAGAATATTGATGTTGATATCATGGCGGTGGAATCGAATGATAGCCGGAGCAAAAGTAAAAGCATCGCAATTCAAAGGATAAGAGGGATCGAGTATAGTGAGAAAGCAGCCCAGCTTGTATTAGAAGAGGAGG
AGAAGAAGCCGAGGCAGGGGAAACCTCCCTTATACAAGGACTTTATTTCAGTTTTATCTGTGAACGTTGCTTGCATTTGGAGCAGGTGACTTGAAAAATGGCTGATCGCCTTACAAGAATTGCTATAGTGAGTTCAGATCGCTGCAAACCCAAGAAATGCAGACAGGAGTGTAAGAAGAGCTGTCCAGTTGTTAGAACAG
GTGCCCTTTCCTGTTTTGCGTTTGTTTTCTAAGTGTATCTCTTGGAACATATTATTTCCTTTTAAGTGCATTCTAACCCAACATTTTACTCTTGGGTTCTTTGTCTCTATCATTCCATAGGATTTTACAAAATCATTCAAGTTTTGTTTTGAAAGTAATTTAATAGTGATGTATCTTGGGATAAAGCACCATTATGTAAT
GTTTTCTGTTTTCC
>TRINITY_DN113687_c0_g2_i11 from sample A2 / Example unspliced isoform:GAAAATCCAAAGTATTTTTGACTTTAGAGTGCCGTCTAACCAGTGAAAATCCGGCATGGAGGTTGCGGGCATACTTTGGTGACATATGATTACAACAGTAGGCTGTGAGTCTCCATTCGCACAAATTCCCATTCATCGTATATGCCAAGTAGCGTGGTAAGATGCAATTACTGTGGACAAAAATGGAAAGAGATATCTTT
CTATGGAAAGCTCTTTTCTTGAATTCCCTGATCCACGTCACGTGAGTGTACTGTATGCAAATATCTATAGAATATTGATGTTGATATCATGGCGGTGGAATCGAATGATAGCCGGAGCAAAAGTAAAAGCATCGCAATTCAAAGGATAAGAGGGATCGAGTATAGTGAGAAAGCAGCCCAGCTTGTATTAGAAGAGGAGG
AGAAGAAGCCGAGGCAGGGGAAACCTCCCTTATACAAGGACTTTATTTCAGgtcctccgccttgccttttgtttctcatgataatgttttatctgtgaacgttgcttgcacagTTTTATCTGTGAACGTTGCTTGCATTTGGAGCAGGTGACTTGAAAAATGGCTGATCGCCTTACAAGAATTGCTATAGTGAGTTCAGA
TCGCTGCAAACCCAAGAAATGCAGACAGGAGTGTAAGAAGAGCTGTCCAGTTGTTAGAACAGGAAAGCTCTGCATAGAAGTTTCTTCTGCCTCTAAAATTGCGTTTATATCAGAAGAGTTGTGCATTGGCTGTGGTATCTGTGTTAAGAAATGTCCATTTGATGCTATCCAGATCATTAACATACCCAAGGATTTAGAAA
AAGATACAACACATCGATATGGGCCGAACACATTCAAGTTACATAGATTACCTGTACCAAAACCAGGACAGGTCTTGGGACTTGTTGGAACAAATGGTATAGGAAAGTCAACTGCACTCAAAGTGCTTGCTGGAAAACTGAAGCCCAACCTTGGCAGGTTCAATAACCCTCCTGATTGGCAGGAAATTCTTACACATTTC
AGGGGATCAGAGCTACAGAATTATTTCACACGTATTTTAGAAGATAATCTGAAGGCTATAATCAAGCCTCAATATGTTGATCATATACCAAAAGCAGTGCAAGGGAATGTTGGCCAGGTGCTTTCTCAAAAGGATGAAAGAGATATGAAGTCTGAGCTTTGCACTGATCTCGAATTGAATCAAGTTATTGATCGAAATGT
TGATGAGTTATCTGGAGGAGAATTGCAGCGGTTTGCTATTGCAGTAGTTGCAGTTCAACATGCTGAGATATATATGTTTGATGAACCCTCAAGTTATCTTGATGTAAGGCAACGTCTTAAAGCTGCACTAGCAATCCGATCCTTGGTCAGGCCCAACAGCTACGTTATTGTTGTCGAGCATGATCTTAGTGTCCTTGATT
ATTTATCGGACTTCATTTGCTGTCTGTACGGGAAACCTGGGGTCTATGGTGTAGTAACGCTTCCATTTTCAGTCAGAGAAGGGATAAATATATTTTTGGCTGGTTTCGTGCCTACTGAAAATCTTCGTTTTCGAGATGAATCACTTATGTTCAAGGTTGCAGAGGTTCCACAGGAAAGTGCAGAAGAGATAAAATCCTAT
GCACGCTACAAATACCCAAGTATGTCTAAAACACAGGGTAATTTCAAACTTCATGTAGAGGAAGGAGAATTCACTGATTCACAGATTGTTGTAATGTTGGGAGAAAATGGAACAGGAAAGACCACCTTCATACGCATGCTGGCTGGATTATTGAAACCAGATACAGTTGAAAACTCAGAGGTAGAGATACCTGAATTTAA
TGTGTCGTACAAGCCACAGAAGATCAGCCCAAAGTTTCAGAATACTGTAAGGATGTTATTACACCAAAAGATTCGAGACTCATACACTCATCCTCAATTCACATCTGATGTCATGAAACCCCTCCAAATTGAGCAATTATTGGATCAGGAAGTTGTAAATCTTTCTGGTGGTGAATTGCAGAGAGTAGCGATATGCTTAT
GTCTTGGCAAGCCTGCAGATATTTATCTAATTGATGAGCCAAGTGCGTATTTAGATTCTGAACAGCGTATTGTGGCAGCAAAGGTCATAAAGCGATTTATTCTTCATGCCAAGCAGACAGCTTTTGTTGTTGAGCATGATTTTATAATGGCAACATATTTGGCAGATAGGGTTATAGTATATGATGGGAAACCTTCCGTG
GAGTGTACTGCCCATGCTCCGCAGAGTCTACAAACAGGAATGAACCTCTTTCTATCACACCTGGATATTACATTTAGACGAGATCCGACGAACTACAGGCCTCGTATAAACAAAGTAGATTCCACAAAGGACAGAGAACAGAAGAATGCAGGGACATATTATTATCTGGATGATTAATTCTTGTCACTCAGTATGTGATA
CACGTGAAAGGTCACGAGCCAACAAAATTACGCCTTCCTCTGTAGCGGCCAGTCTTTGAGAACTGGATTTTATCAAAAGCAATGGTGATGGATTTTCTTTGAGAACTGTAGCTTGAATGAAACATTGGATTCGATAGAGGAGGCTTGGAGACTCGCAACTACACACTGATAATATTGAGGCAGTGGATTATGCTTCTTAC
AACTGTTTGTGTAGGGAGAGAAAGAGTGCCCTACAATGATTTTGCAGTAAAATGGAATGTAACATTTGAGGGTCTCTTTCTTTTAGTTAAATGTAGATTTAGTTTACCATGGGACTTTGTAAACTCTAATTCTTGTACGCCAATGAGCTAAATGCATATTTTATAACGAGAGTGCATCCTATCGAGTATAAATGCTTTAT
TATAGGGACATGTTTATTTGTCTCTGCAACTTTCTCTTCTTTAGAGAAAAGCAACGTTAGAATATCGGGATCTAGATGGTTGAGTTAATAAAGTATCACAAGATATTGTATTGGCA
Intron 8 GTAACTTAAT ... TTCAATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.85 | 15.7 | 4 | 0 |
| A2 | 56.41 | 7.3 | 9 | 3 |
| A3 | 13.46 | 9 | 1 | 0 |
| A4 | 41.95 | 15.7 | 11 | 2 |
| A5 | 44.44 | 3 | 2 | 0 |
| A6 | 0 | 3.3 | 0 | 0 |
| A7 | 27.78 | 10.7 | 4 | 0 |
| A8 | 27.78 | 2.7 | 1 | 0 |
| A9 | 32.5 | 6.3 | 3 | 0 |
| A10 | -1 | 1.3 | 0 | 0 |
>TRINITY_DN100247_c0_g1_i26 from sample A4 / Example spliced isoformGTCTAACCAGTGAAAATCCGGCATGGAGGTTGCGGGCATACTTTGGTGACATATGATTACAACAGTAGGCTGTGAGTCTCCATTCGCACAAATTCCCATTCATCGTATATGCCAAGTAGCGTGGTAAGATGCAATTACTGTGGACAAAAATGGAAAGAGATATCTTTCTATGGAAAGCTCTTTTCTTGAATTCCCTGATC
CACGTCACGTGAGTGTACTGTATGCAAATATCTATAGAATATTGATGTTGATATCATGGCGGTGGAATCGAATGATAGCCGGAGCAAAAGTAAAAGCATCGCAATTCAAAGGATAAGAGGGATCGAGTATAGTGAGAAAGCAGCCCAGCTTGTATTAGAAGAGGAGGAGAAGAAGCCGAGGCAGGGGAAACCTCCCTTAT
ACAAGGACTTTATTTCAGGTCCTCCGCCTTGCCTTTTGTTTCTCATGATAATGTTTTATCTGTGAACGTTGCTTGCACAGTTTTATCTGTGAACGTTGCTTGCATTTGGAGCAGGTGACTTGAAAAATGGCTGATCGCCTTACAAGAATTGCTATAGTGAGTTCAGATCGCTGCAAACCCAAGAAATGCAGACAGGAGTG
TAAGAAGAGCTGTCCAGTTGTTAGAACAGGAAAGCTCTGCATAGAAGTTTCTTCTGCCTCTAAAATTGCGTTTATATCAGAAGAGTTGTGCATTGGCTGTGGTATCTGTGTTAAGAAATGTCCATTTGATGCTATCCAGATCATTAACATACCCAAGGATTTAGAAAAAGATACAACACATCGATATGGGCCGAACACAT
TCAAGTTACATAGATTACCTGTACCAAAACCAGGACAGGTCTTGGGACTTGTTGGAACAAATGGTATAGGAAAGTCAACTGCACTCAAAGTGCTTGCTGGAAAACTGAAGCCCAACCTTGGCAGGTTCAATAACCCTCCTGATTGGCAGGAAATTCTTACACATTTCAGGGGATCAGAGCTACAGAATTATTTCACACGT
ATTTTAGAAGATAATCTGAAGGCTATAATCAAGCCTCAATATGTTGATCACATACCAAAAGCAGTGCAAGGGAATGTTGGCCAGGTGCTTTCTCAAAAGGATGAAAGAGATATGAAGTCTGAGCTTTGCACTGATCTCGAATTGAATCAAGTTATTGATCGAAATGTTGATGAGTTATCTGGAGGAGAATTGCAGCGGTT
TGCTATTGCAGTAGTTGCAGTTCAACATGCTGAGATATATATGTTTGATGAACCCTCAAGTTATCTTGATGTAAGGCAACGTCTTAAAGCTGCACTAGCAATCCGATCCTTGGTCAGGCCCAACAGCTACGTTATTGTTGTCGAGCATGATCTTAGTGTCCTTGATTATTTATCGGACTTCATTTGCTGTCTGTACGGGA
AACCTGGGGTCTATGGTGTAGTAACGCTTCCATTTTCAGTCAGAGAAGGGATAAATATATTTTTGGCTGGTTTCGTGCCTACTGAAAATCTTCGTTTTCGAGATGAATCACTTATGTTCAAGGTTGCAGAGGTTCCACAGGAAAGTGCAGAAGAGATAAAATCCTATGCACGCTACAAATACCCAAGTATGTCTAAAACA
CAGGGTAATTTCAAACTTCATGTAGAGGAAGGAGAATTCACTGATTCACAGATTGTTGTAATGTTGGGAGAAAATGGAACAGGAAAGACCACCTTCATACGCATGCTGGCTGGATTATTGAAACCAGATACAGTTGAAAACTCAGAGGTAGAGATACCTGAATTTAATGTGTCGTACAAGCCACAGAAGATCAGCCCAAA
GTTTCAGAATACTGTAAGGATGTTATTACACCAAAAGATTCGAGACTCATACACTCATCCTCAATTCACATCTGATGTCATGAAACCCCTCCAAATTGAGCAATTATTGGATCAGGAAGTTGTAAATCTTTCTGGTGGTGAATTGCAGAGAGTAGCGATATGCTTATGTCTTGGCAAGCCTGCAGATATTTATCTAATTG
ATGAGCCAAGTGCGTATTTAGATTCTGAACAGCGTATTGTGGCAGCAAAGGTCATAAAGCGATTTATTCTTCATGCCAAGCAGACAGCTTTTGTTGTTGAGCATGATTTTATAATGGCAACATATTTGGCAGATAGGGTTATAGTATATGATGGGAAACCTTCCGTGGAGTGTACTGCCCATGCTCCGCAGAGTCTACAA
ACAGGAATGAACCTCTTTCTATCACACCTGGATATTACATTTAGACGAGATCCGACGAACTACAGGCCTCGTATAAACAAAGTAGATTCCACAAAGGACAGAGAACAGAAGAATGCAGGGACATATTATTATCTGGATGATTAATTCTTGTCACTCAGTATGTGATACACGTGAAAGGTCACGAGCCAACAAAATTACGC
CTTCCTCTGTAGCGGCCAGTCTTTGAGAACTGGATTTTATCAAAAGCAATGGTGATGGATTTTCTTTGAGAACTGTAGCTTGAATGAAACATTGGATTCGATAGAGGAGGCTTGGAGACTCGCAACTACACACTGAT
>TRINITY_DN100247_c0_g1_i29 from sample A4 / Example unspliced isoform:GTCTAACCAGTGAAAATCCGGCATGGAGGTTGCGGGCATACTTTGGTGACATATGATTACAACAGTAGGCTGTGAGTCTCCATTCGCACAAATTCCCATTCATCGTATATGCCAAGTAGCGTGGTAAGATGCAATTACTGTGGACAAAAATGGAAAGAGATATCTTTCTATGGAAAGCTCTTTTCTTGAATTCCCTGATC
CACGTCACGTGAGTGTACTGTATGCAAATATCTATAGAATATTGATGTTGATATCATGGCGGTGGAATCGAATGATAGCCGGAGCAAAAGTAAAAGCATCGCAATTCAAAGGATAAGAGGGATCGAGTATAGTGAGAAAGCAGCCCAGCTTGTATTAGAAGAGGAGGAGAAGAAGCCGAGGCAGGGGAAACCTCCCTTAT
ACAAGGACTTTATTTCAGgtaacttaattttcttctctcgtatttattatttttattatttgtattttccaatcctaagcaggagccgagtagattttgttgctcacccaacctatttgatctgtgtctttcttgcattcatttcaatacagGTCCTCCGCCTTGCCCT
Intron 9 GTCCTCCGCC ... TTTGGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 77.78 | 5 | 19 | 16 |
| A2 | 57.14 | 6 | 9 | 7 |
| A3 | 74.19 | 4 | 12 | 11 |
| A4 | 71.43 | 6 | 18 | 12 |
| A5 | 84.62 | 1 | 4 | 7 |
| A6 | 69.23 | 2 | 4 | 5 |
| A7 | 71.43 | 4 | 12 | 8 |
| A8 | 33.33 | 4 | 3 | 1 |
| A9 | 55.56 | 6 | 7 | 8 |
| A10 | 80 | 1 | 2 | 6 |
>TRINITY_DN113687_c0_g2_i8 from sample A2 / Example spliced isoformGAAAATCCAAAGTATTTTTGACTTTAGAGTGCCGTCTAACCAGTGAAAATCCGGCATGGAGGTTGCGGGCATACTTTGGTGACATATGATTACAACAGTAGGCTGTGAGTCTCCATTCGCACAAATTCCCATTCATCGTATATGCCAAGTAGCGTGGTAAGATGCAATTACTGTGGACAAAAATGGAAAGAGATATCTTT
CTATGGAAAGCTCTTTTCTTGAATTCCCTGATCCACGTCACGTGAGTGTACTGTATGCAAATATCTATAGAATATTGATGTTGATATCATGGCGGTGGAATCGAATGATAGCCGGAGCAAAAGTAAAAGCATCGCAATTCAAAGGATAAGAGGGATCGAGTATAGTGAGAAAGCAGCCCAGCTTGTATTAGAAGAGGAGG
AGAAGAAGCCGAGGCAGGGGAAACCTCCCTTATACAAGGACTTTATTTCAGGTGACTTGAAAAATGGCTGATCGCCTTACAAGAATTGCTATAGTGAGTTCAGATCGCTGCAAACCCAAGAAATGCAGACAGGAGTGTAAGAAGAGCTGTCCAGTTGTTAGAACAGGAAAGCTCTGCATAGAAGTTTCTTCTGCCTCTAA
AATTGCGTTTATATCAGAAGAGTTGTGCATTGGCTGTGGTATCTGTGTTAAGAAATGTCCATTTGATGCTATCCAGATCATTAACATACCCAAGGATTTAGAAAAAGATACAACACATCGATATGGGCCGAACACATTCAAGTTACATAGATTACCTGTACCAAAACCAGGACAGGTCTTGGGACTTGTTGGAACAAATG
GTATAGGAAAGTCAACTGCACTCAAAGTGCTTGCTGGAAAACTGAAGCCCAACCTTGGCAGGTTCAATAACCCTCCTGATTGGCAGGAAATTCTTACACATTTCAGGGGATCAGAGCTACAGAATTATTTCACACGTATTTTAGAAGATAATCTGAAGGCTATAATCAAGCCTCAATATGTTGATCATATACCAAAAGCA
GTGCAAGGGAATGTTGGCCAGGTGCTTTCTCAAAAGGATGAAAGAGATATGAAGTCTGAGCTTTGCACTGATCTCGAATTGAATCAAGTTATTGATCGAAATGTTGATGAGTTATCTGGAGGAGAATTGCAGCGGTTTGCTATTGCAGTAGTTGCAGTTCAACATGCTGAGATATATATGTTTGATGAACCCTCAAGTTA
TCTTGATGTAAGGCAACGTCTTAAAGCTGCACTAGCAATCCGATCCTTGGTCAGGCCCAACAGCTACGTTATTGTTGTCGAGCATGATCTTAGTGTCCTTGATTATTTATCGGACTTCATTTGCTGTCTGTACGGGAAACCTGGGGTCTATGGTGTAGTAACGCTTCCATTTTCAGTCAGAGAAGGGATAAATATATTTT
TGGCTGGTTTCGTGCCTACTGAAAATCTTCGTTTTCGAGATGAATCACTTATGTTCAAGGTTGCAGAGGTTCCACAGGAAAGTGCAGAAGAGATAAAATCCTATGCACGCTACAAATACCCAAGTATGTCTAAAACACAGGGTAATTTCAAACTTCATGTAGAGGAAGGAGAATTCACTGATTCACAGATTGTTGTAATG
TTGGGAGAAAATGGAACAGGAAAGACCACCTTCATACGCATGCTGGCTGGATTATTGAAACCAGATACAGTTGAAAACTCAGAGGTAGAGATACCTGAATTTAATGTGTCGTACAAGCCACAGAAGATCAGCCCAAAGTTTCAGAATACTGTAAGGATGTTATTACACCAAAAGATTCGAGACTCATACACTCATCCTCA
ATTCACATCTGATGTCATGAAACCCCTCCAAATTGAGCAATTATTGGATCAGGAAGTTGTAAATCTTTCTGGTGGTGAATTGCAGAGAGTAGCGATATGCTTATGTCTTGGCAAGCCTGCAGATATTTATCTAATTGATGAGCCAAGTGCGTATTTAGATTCTGAACAGCGTATTGTGGCAGCAAAGGTCATAAAGCGAT
TTATTCTTCATGCCAAGCAGACAGCTTTTGTTGTTGAGCATGATTTTATAATGGCAACATATTTGGCAGATAGGGTTATAGTATATGATGGGAAACCTTCCGTGGAGTGTACTGCCCATGCTCCGCAGAGTCTACAAACAGGAATGAACCTCTTTCTATCACACCTGGATATTACATTTAGACGAGATCCGACGAACTAC
AGGCCTCGTATAAACAAAGTAGATTCCACAAAGGACAGAGAACAGAAGAATGCAGGGACATATTATTATCTGGATGATTAATTCTTGTCACTCAGTATGTGATACACGTGAAAGGTCACGAGCCAACAAAATTACGCCTTCCTCTGTAGCGGCCAGTCTTTGAGAACTGGATTTTATCAAAAGCAATGGTGATGGATTTT
CTTTGAGAACTGTAGCTTGAATGAAACATTGGATTCGATAGAGGAGGCTTGGAGACTCGCAACTACACACTGATAATATTGAGGCAGTGGATTATGCTTCTTACAACTGTTTGTGTAGGGAGAGAAAGAGTGCCCTACAATGATTTTGCAGTAAAATGGAATGTAACATTTGAGGGTCTCTTTCTTTTAGTTAAATGTAG
ATTTAGTTTACCATGGGACTTTGTAAACTCTAATTCTTGTACGCCAATGAGCTAAATGCATATTTTATAACGAGAGTGCATCCTATCGAGTATAAATGCTTTATTATAGGGACATGTTTATTTGTCTCTGCAACTTTCTCTTCTTTAGAGAAAAGCAACGTTAGAATATCGGGATCTAGATGGTTGAGTTAATAAAGTAT
CACAAGATATTGTATTGGCA
>TRINITY_DN113687_c0_g2_i11 from sample A2 / Example unspliced isoform:GAAAATCCAAAGTATTTTTGACTTTAGAGTGCCGTCTAACCAGTGAAAATCCGGCATGGAGGTTGCGGGCATACTTTGGTGACATATGATTACAACAGTAGGCTGTGAGTCTCCATTCGCACAAATTCCCATTCATCGTATATGCCAAGTAGCGTGGTAAGATGCAATTACTGTGGACAAAAATGGAAAGAGATATCTTT
CTATGGAAAGCTCTTTTCTTGAATTCCCTGATCCACGTCACGTGAGTGTACTGTATGCAAATATCTATAGAATATTGATGTTGATATCATGGCGGTGGAATCGAATGATAGCCGGAGCAAAAGTAAAAGCATCGCAATTCAAAGGATAAGAGGGATCGAGTATAGTGAGAAAGCAGCCCAGCTTGTATTAGAAGAGGAGG
AGAAGAAGCCGAGGCAGGGGAAACCTCCCTTATACAAGGACTTTATTTCAGgtcctccgccttgccttttgtttctcatgataatgttttatctgtgaacgttgcttgcacagttttatctgtgaacgttgcttgcatttggagcagGTGACTTGAAAAATGGCTGATCGCCTTACAAGAATTGCTATAGTGAGTTCAGA
TCGCTGCAAACCCAAGAAATGCAGACAGGAGTGTAAGAAGAGCTGTCCAGTTGTTAGAACAGGAAAGCTCTGCATAGAAGTTTCTTCTGCCTCTAAAATTGCGTTTATATCAGAAGAGTTGTGCATTGGCTGTGGTATCTGTGTTAAGAAATGTCCATTTGATGCTATCCAGATCATTAACATACCCAAGGATTTAGAAA
AAGATACAACACATCGATATGGGCCGAACACATTCAAGTTACATAGATTACCTGTACCAAAACCAGGACAGGTCTTGGGACTTGTTGGAACAAATGGTATAGGAAAGTCAACTGCACTCAAAGTGCTTGCTGGAAAACTGAAGCCCAACCTTGGCAGGTTCAATAACCCTCCTGATTGGCAGGAAATTCTTACACATTTC
AGGGGATCAGAGCTACAGAATTATTTCACACGTATTTTAGAAGATAATCTGAAGGCTATAATCAAGCCTCAATATGTTGATCATATACCAAAAGCAGTGCAAGGGAATGTTGGCCAGGTGCTTTCTCAAAAGGATGAAAGAGATATGAAGTCTGAGCTTTGCACTGATCTCGAATTGAATCAAGTTATTGATCGAAATGT
TGATGAGTTATCTGGAGGAGAATTGCAGCGGTTTGCTATTGCAGTAGTTGCAGTTCAACATGCTGAGATATATATGTTTGATGAACCCTCAAGTTATCTTGATGTAAGGCAACGTCTTAAAGCTGCACTAGCAATCCGATCCTTGGTCAGGCCCAACAGCTACGTTATTGTTGTCGAGCATGATCTTAGTGTCCTTGATT
ATTTATCGGACTTCATTTGCTGTCTGTACGGGAAACCTGGGGTCTATGGTGTAGTAACGCTTCCATTTTCAGTCAGAGAAGGGATAAATATATTTTTGGCTGGTTTCGTGCCTACTGAAAATCTTCGTTTTCGAGATGAATCACTTATGTTCAAGGTTGCAGAGGTTCCACAGGAAAGTGCAGAAGAGATAAAATCCTAT
GCACGCTACAAATACCCAAGTATGTCTAAAACACAGGGTAATTTCAAACTTCATGTAGAGGAAGGAGAATTCACTGATTCACAGATTGTTGTAATGTTGGGAGAAAATGGAACAGGAAAGACCACCTTCATACGCATGCTGGCTGGATTATTGAAACCAGATACAGTTGAAAACTCAGAGGTAGAGATACCTGAATTTAA
TGTGTCGTACAAGCCACAGAAGATCAGCCCAAAGTTTCAGAATACTGTAAGGATGTTATTACACCAAAAGATTCGAGACTCATACACTCATCCTCAATTCACATCTGATGTCATGAAACCCCTCCAAATTGAGCAATTATTGGATCAGGAAGTTGTAAATCTTTCTGGTGGTGAATTGCAGAGAGTAGCGATATGCTTAT
GTCTTGGCAAGCCTGCAGATATTTATCTAATTGATGAGCCAAGTGCGTATTTAGATTCTGAACAGCGTATTGTGGCAGCAAAGGTCATAAAGCGATTTATTCTTCATGCCAAGCAGACAGCTTTTGTTGTTGAGCATGATTTTATAATGGCAACATATTTGGCAGATAGGGTTATAGTATATGATGGGAAACCTTCCGTG
GAGTGTACTGCCCATGCTCCGCAGAGTCTACAAACAGGAATGAACCTCTTTCTATCACACCTGGATATTACATTTAGACGAGATCCGACGAACTACAGGCCTCGTATAAACAAAGTAGATTCCACAAAGGACAGAGAACAGAAGAATGCAGGGACATATTATTATCTGGATGATTAATTCTTGTCACTCAGTATGTGATA
CACGTGAAAGGTCACGAGCCAACAAAATTACGCCTTCCTCTGTAGCGGCCAGTCTTTGAGAACTGGATTTTATCAAAAGCAATGGTGATGGATTTTCTTTGAGAACTGTAGCTTGAATGAAACATTGGATTCGATAGAGGAGGCTTGGAGACTCGCAACTACACACTGATAATATTGAGGCAGTGGATTATGCTTCTTAC
AACTGTTTGTGTAGGGAGAGAAAGAGTGCCCTACAATGATTTTGCAGTAAAATGGAATGTAACATTTGAGGGTCTCTTTCTTTTAGTTAAATGTAGATTTAGTTTACCATGGGACTTTGTAAACTCTAATTCTTGTACGCCAATGAGCTAAATGCATATTTTATAACGAGAGTGCATCCTATCGAGTATAAATGCTTTAT
TATAGGGACATGTTTATTTGTCTCTGCAACTTTCTCTTCTTTAGAGAAAAGCAACGTTAGAATATCGGGATCTAGATGGTTGAGTTAATAAAGTATCACAAGATATTGTATTGGCA
Intron 10 GTGACTTGAA ... GTTAGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 81.54 | 10 | 6.3 | 44 |
| A2 | 66.5 | 21.7 | 5.3 | 43 |
| A3 | 72.86 | 12.7 | 4.3 | 34 |
| A4 | 68.42 | 22.7 | 6.3 | 49 |
| A5 | 62.11 | 7.3 | 1 | 12 |
| A6 | 57.69 | 6 | 2 | 8 |
| A7 | 64.71 | 12 | 4 | 22 |
| A8 | 50 | 4 | 3 | 4 |
| A9 | 65.22 | 18.7 | 5.7 | 35 |
| A10 | 84.21 | 3 | 1 | 16 |
>TRINITY_DN113687_c0_g2_i10 from sample A2 / Example spliced isoformGAAAATCCAAAGTATTTTTGACTTTAGAGTGCCGTCTAACCAGTGAAAATCCGGCATGGAGGTTGCGGGCATACTTTGGTGACATATGATTACAACAGTAGGCTGTGAGTCTCCATTCGCACAAATTCCCATTCATCGTATATGCCAAGTAGCGTGGTAAGATGCAATTACTGTGGACAAAAATGGAAAGAGATATCTTT
CTATGGAAAGCTCTTTTCTTGAATTCCCTGATCCACGTCACGTGAGTGTACTGTATGCAAATATCTATAGAATATTGATGTTGATATCATGGCGGTGGAATCGAATGATAGCCGGAGCAAAAGTAAAAGCATCGCAATTCAAAGGATAAGAGGGATCGAGTATAGTGAGAAAGCAGCCCAGCTTGTATTAGAAGAGGAGG
AGAAGAAGCCGAGGCAGGGGAAACCTCCCTTATACAAGGACTTTATTTCAGGAAAGCTCTGCATAGAAGTTTCTTCTGCCTCTAAAATTGCGTTTATATCAGAAGAGTTGTGCATTGGCTGTGGTATCTGTGTTAAGAAATGTCCATTTGATGCTATCCAGATCATTAACATACCCAAGGATTTAGAAAAAGATACAACA
CATCGATATGGGCCGAACACATTCAAGTTACATAGATTACCTGTACCAAAACCAGGACAGGTCTTGGGACTTGTTGGAACAAATGGTATAGGAAAGTCAACTGCACTCAAAGTGCTTGCTGGAAAACTGAAGCCCAACCTTGGCAGGTTCAATAACCCTCCTGATTGGCAGGAAATTCTTACACATTTCAGGGGATCAGA
GCTACAGAATTATTTCACACGTATTTTAGAAGATAATCTGAAGGCTATAATCAAGCCTCAATATGTTGATCATATACCAAAAGCAGTGCAAGGGAATGTTGGCCAGGTGCTTTCTCAAAAGGATGAAAGAGATATGAAGTCTGAGCTTTGCACTGATCTCGAATTGAATCAAGTTATTGATCGAAATGTTGATGAGTTAT
CTGGAGGAGAATTGCAGCGGTTTGCTATTGCAGTAGTTGCAGTTCAACATGCTGAGATATATATGTTTGATGAACCCTCAAGTTATCTTGATGTAAGGCAACGTCTTAAAGCTGCACTAGCAATCCGATCCTTGGTCAGGCCCAACAGCTACGTTATTGTTGTCGAGCATGATCTTAGTGTCCTTGATTATTTATCGGAC
TTCATTTGCTGTCTGTACGGGAAACCTGGGGTCTATGGTGTAGTAACGCTTCCATTTTCAGTCAGAGAAGGGATAAATATATTTTTGGCTGGTTTCGTGCCTACTGAAAATCTTCGTTTTCGAGATGAATCACTTATGTTCAAGGTTGCAGAGGTTCCACAGGAAAGTGCAGAAGAGATAAAATCCTATGCACGCTACAA
ATACCCAAGTATGTCTAAAACACAGGGTAATTTCAAACTTCATGTAGAGGAAGGAGAATTCACTGATTCACAGATTGTTGTAATGTTGGGAGAAAATGGAACAGGAAAGACCACCTTCATACGCATGCTGGCTGGATTATTGAAACCAGATACAGTTGAAAACTCAGAGGTAGAGATACCTGAATTTAATGTGTCGTACA
AGCCACAGAAGATCAGCCCAAAGTTTCAGAATACTGTAAGGATGTTATTACACCAAAAGATTCGAGACTCATACACTCATCCTCAATTCACATCTGATGTCATGAAACCCCTCCAAATTGAGCAATTATTGGATCAGGAAGTTGTAAATCTTTCTGGTGGTGAATTGCAGAGAGTAGCGATATGCTTATGTCTTGGCAAG
CCTGCAGATATTTATCTAATTGATGAGCCAAGTGCGTATTTAGATTCTGAACAGCGTATTGTGGCAGCAAAGGTCATAAAGCGATTTATTCTTCATGCCAAGCAGACAGCTTTTGTTGTTGAGCATGATTTTATAATGGCAACATATTTGGCAGATAGGGTTATAGTATATGATGGGAAACCTTCCGTGGAGTGTACTGC
CCATGCTCCGCAGAGTCTACAAACAGGAATGAACCTCTTTCTATCACACCTGGATATTACATTTAGACGAGATCCGACGAACTACAGGCCTCGTATAAACAAAGTAGATTCCACAAAGGACAGAGAACAGAAGAATGCAGGGACATATTATTATCTGGATGATTAATTCTTGTCACTCAGTATGTGATACACGTGAAAGG
TCACGAGCCAACAAAATTACGCCTTCCTCTGTAGCGGCCAGTCTTTGAGAACTGGATTTTATCAAAAGCAATGGTGATGGATTTTCTTTGAGAACTGTAGCTTGAATGAAACATTGGATTCGATAGAGGAGGCTTGGAGACTCGCAACTACACACTGATAATATTGAGGCAGTGGATTATGCTTCTTACAACTGTTTGTG
TAGGGAGAGAAAGAGTGCCCTACAATGATTTTGCAGTAAAATGGAATGTAACATTTGAGGGTCTCTTTCTTTTAGTTAAATGTAGATTTAGTTTACCATGGGACTTTGTAAACTCTAATTCTTGTACGCCAATGAGCTAAATGCATATTTTATAACGAGAGTGCATCCTATCGAGTATAAATGCTTTATTATAGGGACAT
GTTTATTTGTCTCTGCAACTTTCTCTTCTTTAGAGAAAAGCAACGTTAGAATATCGGGATCTAGATGGTTGAGTTAATAAAGTATCACAAGATATTGTATTGGCA
>TRINITY_DN113687_c0_g2_i8 from sample A2 / Example unspliced isoform:GAAAATCCAAAGTATTTTTGACTTTAGAGTGCCGTCTAACCAGTGAAAATCCGGCATGGAGGTTGCGGGCATACTTTGGTGACATATGATTACAACAGTAGGCTGTGAGTCTCCATTCGCACAAATTCCCATTCATCGTATATGCCAAGTAGCGTGGTAAGATGCAATTACTGTGGACAAAAATGGAAAGAGATATCTTT
CTATGGAAAGCTCTTTTCTTGAATTCCCTGATCCACGTCACGTGAGTGTACTGTATGCAAATATCTATAGAATATTGATGTTGATATCATGGCGGTGGAATCGAATGATAGCCGGAGCAAAAGTAAAAGCATCGCAATTCAAAGGATAAGAGGGATCGAGTATAGTGAGAAAGCAGCCCAGCTTGTATTAGAAGAGGAGG
AGAAGAAGCCGAGGCAGGGGAAACCTCCCTTATACAAGGACTTTATTTCAGgtgacttgaaaaatggctgatcgccttacaagaattgctatagtgagttcagatcgctgcaaacccaagaaatgcagacaggagtgtaagaagagctgtccagttgttagaacagGAAAGCTCTGCATAGAAGTTTCTTCTGCCTCTAA
AATTGCGTTTATATCAGAAGAGTTGTGCATTGGCTGTGGTATCTGTGTTAAGAAATGTCCATTTGATGCTATCCAGATCATTAACATACCCAAGGATTTAGAAAAAGATACAACACATCGATATGGGCCGAACACATTCAAGTTACATAGATTACCTGTACCAAAACCAGGACAGGTCTTGGGACTTGTTGGAACAAATG
GTATAGGAAAGTCAACTGCACTCAAAGTGCTTGCTGGAAAACTGAAGCCCAACCTTGGCAGGTTCAATAACCCTCCTGATTGGCAGGAAATTCTTACACATTTCAGGGGATCAGAGCTACAGAATTATTTCACACGTATTTTAGAAGATAATCTGAAGGCTATAATCAAGCCTCAATATGTTGATCATATACCAAAAGCA
GTGCAAGGGAATGTTGGCCAGGTGCTTTCTCAAAAGGATGAAAGAGATATGAAGTCTGAGCTTTGCACTGATCTCGAATTGAATCAAGTTATTGATCGAAATGTTGATGAGTTATCTGGAGGAGAATTGCAGCGGTTTGCTATTGCAGTAGTTGCAGTTCAACATGCTGAGATATATATGTTTGATGAACCCTCAAGTTA
TCTTGATGTAAGGCAACGTCTTAAAGCTGCACTAGCAATCCGATCCTTGGTCAGGCCCAACAGCTACGTTATTGTTGTCGAGCATGATCTTAGTGTCCTTGATTATTTATCGGACTTCATTTGCTGTCTGTACGGGAAACCTGGGGTCTATGGTGTAGTAACGCTTCCATTTTCAGTCAGAGAAGGGATAAATATATTTT
TGGCTGGTTTCGTGCCTACTGAAAATCTTCGTTTTCGAGATGAATCACTTATGTTCAAGGTTGCAGAGGTTCCACAGGAAAGTGCAGAAGAGATAAAATCCTATGCACGCTACAAATACCCAAGTATGTCTAAAACACAGGGTAATTTCAAACTTCATGTAGAGGAAGGAGAATTCACTGATTCACAGATTGTTGTAATG
TTGGGAGAAAATGGAACAGGAAAGACCACCTTCATACGCATGCTGGCTGGATTATTGAAACCAGATACAGTTGAAAACTCAGAGGTAGAGATACCTGAATTTAATGTGTCGTACAAGCCACAGAAGATCAGCCCAAAGTTTCAGAATACTGTAAGGATGTTATTACACCAAAAGATTCGAGACTCATACACTCATCCTCA
ATTCACATCTGATGTCATGAAACCCCTCCAAATTGAGCAATTATTGGATCAGGAAGTTGTAAATCTTTCTGGTGGTGAATTGCAGAGAGTAGCGATATGCTTATGTCTTGGCAAGCCTGCAGATATTTATCTAATTGATGAGCCAAGTGCGTATTTAGATTCTGAACAGCGTATTGTGGCAGCAAAGGTCATAAAGCGAT
TTATTCTTCATGCCAAGCAGACAGCTTTTGTTGTTGAGCATGATTTTATAATGGCAACATATTTGGCAGATAGGGTTATAGTATATGATGGGAAACCTTCCGTGGAGTGTACTGCCCATGCTCCGCAGAGTCTACAAACAGGAATGAACCTCTTTCTATCACACCTGGATATTACATTTAGACGAGATCCGACGAACTAC
AGGCCTCGTATAAACAAAGTAGATTCCACAAAGGACAGAGAACAGAAGAATGCAGGGACATATTATTATCTGGATGATTAATTCTTGTCACTCAGTATGTGATACACGTGAAAGGTCACGAGCCAACAAAATTACGCCTTCCTCTGTAGCGGCCAGTCTTTGAGAACTGGATTTTATCAAAAGCAATGGTGATGGATTTT
CTTTGAGAACTGTAGCTTGAATGAAACATTGGATTCGATAGAGGAGGCTTGGAGACTCGCAACTACACACTGATAATATTGAGGCAGTGGATTATGCTTCTTACAACTGTTTGTGTAGGGAGAGAAAGAGTGCCCTACAATGATTTTGCAGTAAAATGGAATGTAACATTTGAGGGTCTCTTTCTTTTAGTTAAATGTAG
ATTTAGTTTACCATGGGACTTTGTAAACTCTAATTCTTGTACGCCAATGAGCTAAATGCATATTTTATAACGAGAGTGCATCCTATCGAGTATAAATGCTTTATTATAGGGACATGTTTATTTGTCTCTGCAACTTTCTCTTCTTTAGAGAAAAGCAACGTTAGAATATCGGGATCTAGATGGTTGAGTTAATAAAGTAT
CACAAGATATTGTATTGGCA
Intron 11 GTCCTCCGCC ... TTTGGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 84.21 | 3 | 17 | 15 |
| A2 | 58.33 | 5 | 8 | 6 |
| A3 | 100 | 0 | 14 | 15 |
| A4 | 93.75 | 1 | 17 | 13 |
| A5 | 85.71 | 1 | 6 | 6 |
| A6 | 69.23 | 2 | 4 | 5 |
| A7 | 100 | 0 | 11 | 7 |
| A8 | 33.33 | 3 | 2 | 1 |
| A9 | 76.47 | 2 | 5 | 8 |
| A10 | 100 | 0 | 6 | 9 |
>TRINITY_DN41569_c0_g1_i1 from sample A6 / Example spliced isoformCAAAGGATAAGAGGGATCGAGTATAGTGAGAAAGCAGCCCAGCTTGTATTAGAAGAGGAGGAGAAGAAGCCGAGGCAGGGGAAACCTCCCTTATACAAGGACTTTATTTCAGGTGACTTGAAAAATGGCTGATCGCCTTACAAGAATTGCTATAGTGAGTTCAGATCGCTGCAAACCCAAGAAATGCAGACAGGAGTGTA
AGAAGAGCTGTCCAGTTGTTAGAACAGGTGCCCTTTCCTGTTTTGCGTTTGTTTTCTAAGTGTATCTCTTGGAACATATTATTTCCTTTTAAGTGCATTCTAACC
>TRINITY_DN41569_c0_g1_i2 from sample A6 / Example unspliced isoform:CAAAGGATAAGAGGGATCGAGTATAGTGAGAAAGCAGCCCAGCTTGTATTAGAAGAGGAGGAGAAGAAGCCGAGGCAGGGGAAACCTCCCTTATACAAGGACTTTATTTCAGgtcctccgccttgccttttgtttctcatgataatgttttatctgtgaacgttgcttgcatttggagcagGTGACTTGAAAAATGGCTG
ATCGCCTTACAAGAATTGCTATAGTGAGTTCAGATCGCTGCAAACCCAAGAAATGCAGACAGGAGTGTAAGAAGAGCTGTCCAGTTGTTAGAACAGGAAAGCTCTGCATAGAAGTTTCTTCTGCCTCTAAAATTGCGTTTATATCAGAAGAGTTGTGCATTGGCTGTGGTATCTGTGTTAAGAAATGTCCATTTGAAGCT
ATCCAGATCATTAACCTACCAAAGGATTTAGATAAAGACACAACACATCGATATGGTCCCAACACATTCAAACTCCACAGGCTGCCTGTACCAAGACCAGGACAGGTGCTGGGACTTGTTGGAACAAATGGTATAGGAAAGTCAACTGCACTCAAAGTGCTTGCTGGAAAACTGAAGCCCAACCTTGGCAGGTTCAATAA
CCCTCCTGATTGGCAGGAAATTCTTACACATTTCAGGGGATCAGAGCTACAGAATTATTTCACACGTATTTTAGAAGATAATCTGAAGGCTATAATCAAGCCTCAATATGTTGATCATATACCAAAAGCAGTGCAAGGGAATGTTGGCCAGGTGCTTTCTCAAAAGGATGAAAGAGATATGAAGTCTGAGCTTTGCACTG
ATCTCGAATTGAATCAAGTTATTGATCGAAATGTTGATGAGTTATCTGGAGGAGAATTGCAGCGGTTTGCTATTGCAGTAGTTGCAGTTCAACATGCTGAGATATATATGTTTGATGAACCCTCAAGTTATCTTGATGTAAGGCAACGTCTTAAAGCTGCACTAGCAATCCGATCCTTGGTCAGGCCCAACAGCTACGTT
ATTGTTGTCGAGCATGATCTTAGTGTCCTTGATTATTTATCGGACTTCATTTGCTGTCTGTACGGGAAACCTGGGGTCTATGGTGTAGTAACGCTTCCATTTTCAGTCAGAGAAGGGATAAATATATTTTTGGCTGGTTTCGTGCCTACTGAAAATCTTCGTTTTCGAGATGAATCACTTATGTTCAAGGTTGCAGAGGT
TCCACAGGAAAGTGCAGAAGAGATAAAATCCTATGCACGCTACAAATACCCAAGTATGTCTAAAACACAGGGTAATTTCAAACTTCATGTAGAGGAAGGAGAATTCACTGATTCACAGATTGTTGTAATGTTGGGAGAAAATGGAACAGGAAAGACCACCTTCATACGCATGCTGGCTGGATTATTGAAACCAGATACAG
TTGAAAACTCAGAGGTAGAGATACCTGAATTTAATGTGTCGTACAAGCCACAGAAGATCAGCCCAAAGTTTCAGAATACTGTAAGGATGTTATTACACCAAAAGATTCGAGACTCATACACTCATCCTCAATTCACATCTGATGTCATGAAACCCCTCCAAATTGAGCAATTATTGGATCAGGAAGTTGTAAATCTTTCT
GGTGGTGAATTGCAGAGAGTAGCGATATGCTTATGTCTTGGCAAGCCTGCAGATATTTATCTAATTGATGAGCCAAGTGCGTATTTAGATTCTGAACAGCGTATTGTGGCAGCAAAGGTCATAAAGCGATTTATTCTTCATGCCAAGCAGACAGCTTTTGTTGTTGAGCATGATTTTATAATGGCAACATATTTGGCAGA
TAGGGTTATAGTATATGATGGGAAACCTTCCGTGGAGTGTACTGCCCATGCTCCGCAGAGTCTACAAACAGGAATGAACCTCTTTCTATCACACCTGGATATTACATTTAGACGAGATCCGACGAACTACAGGCCTCGTATAAACAAAGTAGATTCCACAAAGGACAGAGAACAGAAGAATGCAGGGACATATTATTATC
TGGATGATTAATTCTTGTCACTCAGTATGTGATACACGTGAAAGGTCACGAGCCAACAAAATTACGCCTTCCTCTGTAGCGGCCAGTCTTTGAGAACTGGATTTTATCAAAAGCAATGGTGATGGATTTTCTTTGAGAACTGTAGCTTGAATGAAACATTGGATTCGATAGAGGAGGCTTGGAGACTCGCAACTACACAC
TGATAATATTGAGGCAGTGGATTATGCTTCTTACAACTGTTTGTGTAGGGAGAGAAAGAGTGCCCTACAATGATTTTGCAGTAAAATGGAATGTAACATTTGAGGGTCTCTTTCTTTTAGTTAAATGTAGATTTAGTTTACCATGGGACTTTGTAAACTCTAATTCTTGTACGCCAATGAGCTAAATGCATATTTTATAA
CGAGAGTGCATCCTATCGAGTATAAATGCTTTATTATAGGGACATGTTTATTTGTCTCTGCAACTTTCTCTTCTTTAGAGAAAAGCAACGTTAGAATATCGGGATCTAGATGGTTGAGTTAATAAAGTATCACAAGATATTGTATTGGCATACAGTCTTAAC
Intron 12 GTTTTGGTTA ... GTTAGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 78.57 | 12 | 8 | 44 |
| A2 | 67.19 | 21 | 3 | 43 |
| A3 | 73.91 | 12 | 2 | 34 |
| A4 | 71.01 | 20 | 6 | 49 |
| A5 | 60 | 8 | 1 | 12 |
| A6 | 50 | 8 | 2 | 8 |
| A7 | 64.71 | 12 | 4 | 22 |
| A8 | 50 | 4 | 1 | 4 |
| A9 | 66.04 | 18 | 0 | 35 |
| A10 | 84.21 | 3 | 0 | 16 |
>TRINITY_DN44644_c0_g1_i5 from sample A7 / Example spliced isoformGAAAATCCAAAGTATTTTTGACTTTAGAGTGCCGTCTAACCAGTGAAAATCCGGCATGGAGGTTGCGGGCATACTTTGGTGACATATGATTACAACAGTAGGCTGTGAGTCTCCATTCGCACAAATTCCCATTCATCGTATATGCCAAGTAGCGTGGTAAGATGCAATTACTGTGGACAAAAATGGAAAGAGATATCTTT
CTATGGAAAGCTCTTTTCTTGAATTCCCTGATCCACGTCACGTGAGTGTACTGTATGCAAATATCTATAGAATATTGATGTTGATATCATGGCGGTGGAATCGAATGATAGCCGGAGCAAAAGTAAAAGCATCGCAATTCAAAGGATAAGAGGGATCGAGTATAGTGAGAAAGCAGCCCAGCTTGTATTAGAAGAGGAGG
AGAAGAAGCCGAGGCAGGGGAAACCTCCCTTATACAAGGACTTTATTTCAGGTCCTCCGCCTTGCCTTTTGTTTCTCATGATAATGGAAAGCTCTGCATAGAAGTTTCTTCTGCCTCTAAAATTGCGTTTATATCAGAAGAGTTGTGCATTGGCTGTGGTATCTGTGTTAAGAAATGTCCATTTGATGCTATCCAGATCA
TTAACATACCCAAGGATTTAGAAAAAGATACAACACATCGATATGGGCCGAACACATTCAAGTTACATAGATTACCTGTACCAAAACCAGGACAGGTCTTGGGACTTGTTGGAACAAATGGTATAGGAAAGTCAACTGCACTCAAAGTGCTTGCTGGAAAACTGAAGCCCAACCTTGGCAGGTTCAATAACCCTCCTGAT
TGGCAGGAAATTCTTACACATTTCAGGGGATCAGAGCTACAGAATTATTTCACACGTATTTTAGAAGATAATCTGAAGGCTATAATCAAGCCTCAATATGTTGATCATATACCAAAAGCAGTGCAAGGGAATGTTGGCCAGGTGCTTTCTCAAAAGGATGAAAGAGATATGAAGTCTGAGCTTTGCACTGATCTCGAATT
GAATCAAGTTATTGATCGAAATGTTGATGAGTTATCTGGAGGAGAATTGCAGCGGTTTGCTATTGCAGTAGTTGCAGTTCAACATGCTGAGATATATATGTTTGATGAACCCTCAAGTTATCTTGATGTAAGGCAACGTCTTAAAGCTGCACTAGCAATCCGATCCTTGGTCAGGCCCAACAGCTACGTTATTGTTGTCG
AGCATGATCTTAGTGTCCTTGATTATTTATCGGACTTCATTTGCTGTCTGTACGGGAAACCTGGGGTCTATGGTGTAGTAACGCTTCCATTTTCAGTCAGAGAAGGGATAAATATATTTTTGGCTGGTTTCGTGCCTACTGAAAATCTTCGTTTTCGAGATGAATCACTTATGTTCAAGGTTGCAGAGGTTCCACAGGAA
AGTGCAGAAGAGATAAAATCCTATGCACGCTACAAATACCCAAGTATGTCTAAAACACAGGGTAATTTCAAACTTCATGTAGAGGAAGGAGAATTCACTGATTCACAGATTGTTGTAATGTTGGGAGAAAATGGAACAGGAAAGACCACCTTCATACGCATGCTGGCTGGATTATTGAAACCAGATACAGTTGAAAACTC
AGAGGTAGAGATACCTGAATTTAATGTGTCGTACAAGCCACAGAAGATCAGCCCAAAGTTTCAGAATACTGTAAGGATGTTATTACACCAAAAGATTCGAGACTCATACACTCATCCTCAATTCACATCTGATGTCATGAAACCCCTCCAAATTGAGCAATTATTGGATCAGGAAGTTGTAAATCTTTCTGGTGGTGAAT
TGCAGAGAGTAGCGATATGCTTATGTCTTGGCAAGCCTGCAGATATTTATCTAATTGATGAGCCAAGTGCGTATTTAGATTCTGAACAGCGTATTGTGGCAGCAAAGGTCATAAAGCGATTTATTCTTCATGCCAAGCAGACAGCTTTTGTTGTTGAGCATGATTTTATAATGGCAACATATTTGGCAGATAGGGTTATA
GTATATGATGGGAAACCTTCCGTGGAGTGTACTGCCCATGCTCCGCAGAGTCTACAAACAGGAATGAACCTCTTTCTATCACACCTGGATATTACATTTAGACGAGATCCGACGAACTACAGGCCTCGTATAAACAAAGTAGATTCCACAAAGGACAGAGAACAGAAGAATGCAGGGACATATTATTATCTGGATGATTA
ATTCTTGTCACTCAGTATGTGATACACGTGAAAGGTCACGAGCCAACAAAATTACGCCTTCCTCTGTAGCGGCCAGTCTTTGAGAACTGGATTTTATCAAAAGCAATGGTGATGGATTTTCTTTGAGAACTGTAGCTTGAATGAAACATTGGATTCGATAGAGGAGGCTTGGAGACTCGCAACTACACACTGATAATATT
GAGGCAGTGGATTATGCTTCTTACAACTGTTTGTGTAGGGAGAGAAAGAGTGCCCTACAATGATTTTGCAGTAAAATGGAATGTAACATTTGAGGGTCTCTTTCTTTTAGTTAAATGTAGATTTAGTTTACCATGGGACTTTGTAAACTCTAATTCTTGTACGCCAATGAGCTAAATGCATATTTTATAACGAGAGTGCA
TCCTATCGAGTATAAATGCTTTATTATAGGGACATGTTTATTTGTCTCTGCAACTTTCTCTTCTTTAGAGAAAAGCAACGTTAGAATATCGGGATCTAGATGGTTGAGTTAATAAAGTATCACAAGATATTGTATTGGCATACAGTCTTAACAG
>TRINITY_DN44644_c0_g1_i6 from sample A7 / Example unspliced isoform:GAAAATCCAAAGTATTTTTGACTTTAGAGTGCCGTCTAACCAGTGAAAATCCGGCATGGAGGTTGCGGGCATACTTTGGTGACATATGATTACAACAGTAGGCTGTGAGTCTCCATTCGCACAAATTCCCATTCATCGTATATGCCAAGTAGCGTGGTAAGATGCAATTACTGTGGACAAAAATGGAAAGAGATATCTTT
CTATGGAAAGCTCTTTTCTTGAATTCCCTGATCCACGTCACGTGAGTGTACTGTATGCAAATATCTATAGAATATTGATGTTGATATCATGGCGGTGGAATCGAATGATAGCCGGAGCAAAAGTAAAAGCATCGCAATTCAAAGGATAAGAGGGATCGAGTATAGTGAGAAAGCAGCCCAGCTTGTATTAGAAGAGGAGG
AGAAGAAGCCGAGGCAGGGGAAACCTCCCTTATACAAGGACTTTATTTCAGGTCCTCCGCCTTGCCTTTTGTTTCTCATGATAATGgttttggttagttgatcaagatggttgtatcaaggttcaaatctccagagatagttttcgtcctttatggacaatctcaccctagccattcattctagttttatctgtgaacgt
tgcttgcatttggagcaggtgacttgaaaaatggctgatcgccttacaagaattgctatagtgagttcagatcgctgcaaacccaagaaatgcagacaggagtgtaagaagagctgtccagttgttagaacagGAAAGCTCTGCATAGAAGTTTCTTCTGCCTCTAAAATTGCGTTTATATCAGAAGAGTTGTGCATTGG
CTGTGGTATCTGTGTTAAGAAATGTCCATTTGATGCTATCCAGATCATTAACATACCCAAGGATTTAGAAAAAGATACAACACATCGATATGGGCCGAACACATTCAAGTTACATAGATTACCTGTACCAAAACCAGGACAGGTCTTGGGACTTGTTGGAACAAATGGTATAGGAAAGTCAACTGCACTCAAAGTGCTTG
CTGGAAAACTGAAGCCCAACCTTGGCAGGTTCAATAACCCTCCTGATTGGCAGGAAATTCTTACACATTTCAGGGGATCAGAGCTACAGAATTATTTCACACGTATTTTAGAAGATAATCTGAAGGCTATAATCAAGCCTCAATATGTTGATCATATACCAAAAGCAGTGCAAGGGAATGTTGGCCAGGTGCTTTCTCAA
AAGGATGAAAGAGATATGAAGTCTGAGCTTTGCACTGATCTCGAATTGAATCAAGTTATTGATCGAAATGTTGATGAGTTATCTGGAGGAGAATTGCAGCGGTTTGCTATTGCAGTAGTTGCAGTTCAACATGCTGAGATATATATGTTTGATGAACCCTCAAGTTATCTTGATGTAAGGCAACGTCTTAAAGCTGCACT
AGCAATCCGATCCTTGGTCAGGCCCAACAGCTACGTTATTGTTGTCGAGCATGATCTTAGTGTCCTTGATTATTTATCGGACTTCATTTGCTGTCTGTACGGGAAACCTGGGGTCTATGGTGTAGTAACGCTTCCATTTTCAGTCAGAGAAGGGATAAATATATTTTTGGCTGGTTTCGTGCCTACTGAAAATCTTCGTT
TTCGAGATGAATCACTTATGTTCAAGGTTGCAGAGGTTCCACAGGAAAGTGCAGAAGAGATAAAATCCTATGCACGCTACAAATACCCAAGTATGTCTAAAACACAGGGTAATTTCAAACTTCATGTAGAGGAAGGAGAATTCACTGATTCACAGATTGTTGTAATGTTGGGAGAAAATGGAACAGGAAAGACCACCTTC
ATACGCATGCTGGCTGGATTATTGAAACCAGATACAGTTGAAAACTCAGAGGTAGAGATACCTGAATTTAATGTGTCGTACAAGCCACAGAAGATCAGCCCAAAGTTTCAGAATACTGTAAGGATGTTATTACACCAAAAGATTCGAGACTCATACACTCATCCTCAATTCACATCTGATGTCATGAAACCCCTCCAAAT
TGAGCAATTATTGGATCAGGAAGTTGTAAATCTTTCTGGTGGTGAATTGCAGAGAGTAGCGATATGCTTATGTCTTGGCAAGCCTGCAGATATTTATCTAATTGATGAGCCAAGTGCGTATTTAGATTCTGAACAGCGTATTGTGGCAGCAAAGGTCATAAAGCGATTTATTCTTCATGCCAAGCAGACAGCTTTTGTTG
TTGAGCATGATTTTATAATGGCAACATATTTGGCAGATAGGGTTATAGTATATGATGGGAAACCTTCCGTGGAGTGTACTGCCCATGCTCCGCAGAGTCTACAAACAGGAATGAACCTCTTTCTATCACACCTGGATATTACATTTAGACGAGATCCGACGAACTACAGGCCTCGTATAAACAAAGTAGATTCCACAAAG
GACAGAGAACAGAAGAATGCAGGGACATATTATTATCTGGATGATTAATTCTTGTCACTCAGTATGTGATACACGTGAAAGGTCACGAGCCAACAAAATTACGCCTTCCTCTGTAGCGGCCAGTCTTTGAGAACTGGATTTTATCAAAAGCAATGGTGATGGATTTTCTTTGAGAACTGTAGCTTGAATGAAACATTGGA
TTCGATAGAGGAGGCTTGGAGACTCGCAACTACACACTGATAATATTGAGGCAGTGGATTATGCTTCTTACAACTGTTTGTGTAGGGAGAGAAAGAGTGCCCTACAATGATTTTGCAGTAAAATGGAATGTAACATTTGAGGGTCTCTTTCTTTTAGTTAAATGTAGATTTAGTTTACCATGGGACTTTGTAAACTCTAA
TTCTTGTACGCCAATGAGCTAAATGCATATTTTATAACGAGAGTGCATCCTATCGAGTATAAATGCTTTATTATAGGGACATGTTTATTTGTCTCTGCAACTTTCTCTTCTTTAGAGAAAAGCAACGTTAGAATATCGGGATCTAGATGGTTGAGTTAATAAAGTATCACAAGATATTGTATTGGCATACAGTCTTAACA
G
Intron 13 GTTTTGGTTA ... TTCATTCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.83 | 19 | 8 | 2 |
| A2 | 21.74 | 9 | 3 | 2 |
| A3 | 10.53 | 17 | 2 | 2 |
| A4 | 25.58 | 16 | 6 | 5 |
| A5 | 12.5 | 7 | 1 | 1 |
| A6 | 26.32 | 7 | 2 | 3 |
| A7 | 33.33 | 10 | 4 | 6 |
| A8 | 20 | 2 | 1 | 0 |
| A9 | 14.29 | 6 | 0 | 2 |
| A10 | 11.11 | 8 | 0 | 2 |
>TRINITY_DN44644_c0_g1_i2 from sample A7 / Example spliced isoformGAAAATCCAAAGTATTTTTGACTTTAGAGTGCCGTCTAACCAGTGAAAATCCGGCATGGAGGTTGCGGGCATACTTTGGTGACATATGATTACAACAGTAGGCTGTGAGTCTCCATTCGCACAAATTCCCATTCATCGTATATGCCAAGTAGCGTGGTAAGATGCAATTACTGTGGACAAAAATGGAAAGAGATATCTTT
CTATGGAAAGCTCTTTTCTTGAATTCCCTGATCCACGTCACGTGAGTGTACTGTATGCAAATATCTATAGAATATTGATGTTGATATCATGGCGGTGGAATCGAATGATAGCCGGAGCAAAAGTAAAAGCATCGCAATTCAAAGGATAAGAGGGATCGAGTATAGTGAGAAAGCAGCCCAGCTTGTATTAGAAGAGGAGG
AGAAGAAGCCGAGGCAGGGGAAACCTCCCTTATACAAGGACTTTATTTCAGGTCCTCCGCCTTGCCTTTTGTTTCTCATGATAATGTTTTATCTGTGAACGTTGCTTGCATTTGGAGCAGGTGACTTGAAAAATGGCTGATCGCCTTACAAGAATTGCTATAGTGAGTTCAGATCGCTGCAAACCCAAGAAATGCAGACA
GGAGTGTAAGAAGAGCTGTCCAGTTGTTAGAACAGGAAAGCTCTGCATAGAAGTTTCTTCTGCCTCTAAAATTGCGTTTATATCAGAAGAGTTGTGCATTGGCTGTGGTATCTGTGTTAAGAAATGTCCATTTGATGCTATCCAGATCATTAACATACCCAAGGATTTAGAAAAAGATACAACACATCGATATGGGCCGA
ACACATTCAAGTTACATAGATTACCTGTACCAAAACCAGGACAGGTCTTGGGACTTGTTGGAACAAATGGTATAGGAAAGTCAACTGCACTCAAAGTGCTTGCTGGAAAACTGAAGCCCAACCTTGGCAGGTTCAATAACCCTCCTGATTGGCAGGAAATTCTTACACATTTCAGGGGATCAGAGCTACAGAATTATTTC
ACACGTATTTTAGAAGATAATCTGAAGGCTATAATCAAGCCTCAATATGTTGATCATATACCAAAAGCAGTGCAAGGGAATGTTGGCCAGGTGCTTTCTCAAAAGGATGAAAGAGATATGAAGTCTGAGCTTTGCACTGATCTCGAATTGAATCAAGTTATTGATCGAAATGTTGATGAGTTATCTGGAGGAGAATTGCA
GCGGTTTGCTATTGCAGTAGTTGCAGTTCAACATGCTGAGATATATATGTTTGATGAACCCTCAAGTTATCTTGATGTAAGGCAACGTCTTAAAGCTGCACTAGCAATCCGATCCTTGGTCAGGCCCAACAGCTACGTTATTGTTGTCGAGCATGATCTTAGTGTCCTTGATTATTTATCGGACTTCATTTGCTGTCTGT
ACGGGAAACCTGGGGTCTATGGTGTAGTAACGCTTCCATTTTCAGTCAGAGAAGGGATAAATATATTTTTGGCTGGTTTCGTGCCTACTGAAAATCTTCGTTTTCGAGATGAATCACTTATGTTCAAGGTTGCAGAGGTTCCACAGGAAAGTGCAGAAGAGATAAAATCCTATGCACGCTACAAATACCCAAGTATGTCT
AAAACACAGGGTAATTTCAAACTTCATGTAGAGGAAGGAGAATTCACTGATTCACAGATTGTTGTAATGTTGGGAGAAAATGGAACAGGAAAGACCACCTTCATACGCATGCTGGCTGGATTATTGAAACCAGATACAGTTGAAAACTCAGAGGTAGAGATACCTGAATTTAATGTGTCGTACAAGCCACAGAAGATCAG
CCCAAAGTTTCAGAATACTGTAAGGATGTTATTACACCAAAAGATTCGAGACTCATACACTCATCCTCAATTCACATCTGATGTCATGAAACCCCTCCAAATTGAGCAATTATTGGATCAGGAAGTTGTAAATCTTTCTGGTGGTGAATTGCAGAGAGTAGCGATATGCTTATGTCTTGGCAAGCCTGCAGATATTTATC
TAATTGATGAGCCAAGTGCGTATTTAGATTCTGAACAGCGTATTGTGGCAGCAAAGGTCATAAAGCGATTTATTCTTCATGCCAAGCAGACAGCTTTTGTTGTTGAGCATGATTTTATAATGGCAACATATTTGGCAGATAGGGTTATAGTATATGATGGGAAACCTTCCGTGGAGTGTACTGCCCATGCTCCGCAGAGT
CTACAAACAGGAATGAACCTCTTTCTATCACACCTGGATATTACATTTAGACGAGATCCGACGAACTACAGGCCTCGTATAAACAAAGTAGATTCCACAAAGGACAGAGAACAGAAGAATGCAGGGACATATTATTATCTGGATGATTAATTCTTGTCACTCAGTATGTGATACACGTGAAAGGTCACGAGCCAACAAAA
TTACGCCTTCCTCTGTAGCGGCCAGTCTTTGAGAACTGGATTTTATCAAAAGCAATGGTGATGGATTTTCTTTGAGAACTGTAGCTTGAATGAAACATTGGATTCGATAGAGGAGGCTTGGAGACTCGCAACTACACACTGATAATATTGAGGCAGTGGATTATGCTTCTTACAACTGTTTGTGTAGGGAGAGAAAGAGT
GCCCTACAATGATTTTGCAGTAAAATGGAATGTAACATTTGAGGGTCTCTTTCTTTTAGTTAAATGTAGATTTAGTTTACCATGGGACTTTGTAAACTCTAATTCTTGTACGCCAATGAGCTAAATGCATATTTTATAACGAGAGTGCATCCTATCGAGTATAAATGCTTTATTATAGGGACATGTTTATTTGTCTCTGC
AACTTTCTCTTCTTTAGAGAAAAGCAACGTTAGAATATCGGGATCTAGATGGTTGAGTTAATAAAGTATCACAAGATATTGTATTGGCATACAGTCTTAACAG
>TRINITY_DN44644_c0_g1_i6 from sample A7 / Example unspliced isoform:GAAAATCCAAAGTATTTTTGACTTTAGAGTGCCGTCTAACCAGTGAAAATCCGGCATGGAGGTTGCGGGCATACTTTGGTGACATATGATTACAACAGTAGGCTGTGAGTCTCCATTCGCACAAATTCCCATTCATCGTATATGCCAAGTAGCGTGGTAAGATGCAATTACTGTGGACAAAAATGGAAAGAGATATCTTT
CTATGGAAAGCTCTTTTCTTGAATTCCCTGATCCACGTCACGTGAGTGTACTGTATGCAAATATCTATAGAATATTGATGTTGATATCATGGCGGTGGAATCGAATGATAGCCGGAGCAAAAGTAAAAGCATCGCAATTCAAAGGATAAGAGGGATCGAGTATAGTGAGAAAGCAGCCCAGCTTGTATTAGAAGAGGAGG
AGAAGAAGCCGAGGCAGGGGAAACCTCCCTTATACAAGGACTTTATTTCAGGTCCTCCGCCTTGCCTTTTGTTTCTCATGATAATGgttttggttagttgatcaagatggttgtatcaaggttcaaatctccagagatagttttcgtcctttatggacaatctcaccctagccattcattctagTTTTATCTGTGAACGT
TGCTTGCATTTGGAGCAGGTGACTTGAAAAATGGCTGATCGCCTTACAAGAATTGCTATAGTGAGTTCAGATCGCTGCAAACCCAAGAAATGCAGACAGGAGTGTAAGAAGAGCTGTCCAGTTGTTAGAACAGGAAAGCTCTGCATAGAAGTTTCTTCTGCCTCTAAAATTGCGTTTATATCAGAAGAGTTGTGCATTGG
CTGTGGTATCTGTGTTAAGAAATGTCCATTTGATGCTATCCAGATCATTAACATACCCAAGGATTTAGAAAAAGATACAACACATCGATATGGGCCGAACACATTCAAGTTACATAGATTACCTGTACCAAAACCAGGACAGGTCTTGGGACTTGTTGGAACAAATGGTATAGGAAAGTCAACTGCACTCAAAGTGCTTG
CTGGAAAACTGAAGCCCAACCTTGGCAGGTTCAATAACCCTCCTGATTGGCAGGAAATTCTTACACATTTCAGGGGATCAGAGCTACAGAATTATTTCACACGTATTTTAGAAGATAATCTGAAGGCTATAATCAAGCCTCAATATGTTGATCATATACCAAAAGCAGTGCAAGGGAATGTTGGCCAGGTGCTTTCTCAA
AAGGATGAAAGAGATATGAAGTCTGAGCTTTGCACTGATCTCGAATTGAATCAAGTTATTGATCGAAATGTTGATGAGTTATCTGGAGGAGAATTGCAGCGGTTTGCTATTGCAGTAGTTGCAGTTCAACATGCTGAGATATATATGTTTGATGAACCCTCAAGTTATCTTGATGTAAGGCAACGTCTTAAAGCTGCACT
AGCAATCCGATCCTTGGTCAGGCCCAACAGCTACGTTATTGTTGTCGAGCATGATCTTAGTGTCCTTGATTATTTATCGGACTTCATTTGCTGTCTGTACGGGAAACCTGGGGTCTATGGTGTAGTAACGCTTCCATTTTCAGTCAGAGAAGGGATAAATATATTTTTGGCTGGTTTCGTGCCTACTGAAAATCTTCGTT
TTCGAGATGAATCACTTATGTTCAAGGTTGCAGAGGTTCCACAGGAAAGTGCAGAAGAGATAAAATCCTATGCACGCTACAAATACCCAAGTATGTCTAAAACACAGGGTAATTTCAAACTTCATGTAGAGGAAGGAGAATTCACTGATTCACAGATTGTTGTAATGTTGGGAGAAAATGGAACAGGAAAGACCACCTTC
ATACGCATGCTGGCTGGATTATTGAAACCAGATACAGTTGAAAACTCAGAGGTAGAGATACCTGAATTTAATGTGTCGTACAAGCCACAGAAGATCAGCCCAAAGTTTCAGAATACTGTAAGGATGTTATTACACCAAAAGATTCGAGACTCATACACTCATCCTCAATTCACATCTGATGTCATGAAACCCCTCCAAAT
TGAGCAATTATTGGATCAGGAAGTTGTAAATCTTTCTGGTGGTGAATTGCAGAGAGTAGCGATATGCTTATGTCTTGGCAAGCCTGCAGATATTTATCTAATTGATGAGCCAAGTGCGTATTTAGATTCTGAACAGCGTATTGTGGCAGCAAAGGTCATAAAGCGATTTATTCTTCATGCCAAGCAGACAGCTTTTGTTG
TTGAGCATGATTTTATAATGGCAACATATTTGGCAGATAGGGTTATAGTATATGATGGGAAACCTTCCGTGGAGTGTACTGCCCATGCTCCGCAGAGTCTACAAACAGGAATGAACCTCTTTCTATCACACCTGGATATTACATTTAGACGAGATCCGACGAACTACAGGCCTCGTATAAACAAAGTAGATTCCACAAAG
GACAGAGAACAGAAGAATGCAGGGACATATTATTATCTGGATGATTAATTCTTGTCACTCAGTATGTGATACACGTGAAAGGTCACGAGCCAACAAAATTACGCCTTCCTCTGTAGCGGCCAGTCTTTGAGAACTGGATTTTATCAAAAGCAATGGTGATGGATTTTCTTTGAGAACTGTAGCTTGAATGAAACATTGGA
TTCGATAGAGGAGGCTTGGAGACTCGCAACTACACACTGATAATATTGAGGCAGTGGATTATGCTTCTTACAACTGTTTGTGTAGGGAGAGAAAGAGTGCCCTACAATGATTTTGCAGTAAAATGGAATGTAACATTTGAGGGTCTCTTTCTTTTAGTTAAATGTAGATTTAGTTTACCATGGGACTTTGTAAACTCTAA
TTCTTGTACGCCAATGAGCTAAATGCATATTTTATAACGAGAGTGCATCCTATCGAGTATAAATGCTTTATTATAGGGACATGTTTATTTGTCTCTGCAACTTTCTCTTCTTTAGAGAAAAGCAACGTTAGAATATCGGGATCTAGATGGTTGAGTTAATAAAGTATCACAAGATATTGTATTGGCATACAGTCTTAACA
G