sp|Q6QJ72|PDL2_ARATH ----> Pterin-4-alpha-carbinolamine dehydratase 2, mitochondrial
Intron 1 GTTGGAGGTT ... CCTTTACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.1 | 63 | 20 | 20 |
| A2 | 25.42 | 44 | 22 | 8 |
| A3 | 24.29 | 53 | 26 | 8 |
| A4 | 17.07 | 34 | 12 | 2 |
| A5 | 27.27 | 28 | 9 | 12 |
| A6 | 50 | 2 | 4 | 0 |
| A7 | 13.51 | 16 | 3 | 2 |
| A8 | 25 | 9 | 6 | 0 |
| A9 | 15.38 | 11 | 4 | 0 |
| A10 | 18.18 | 18 | 6 | 2 |
>TRINITY_DN123765_c0_g1_i2 from sample A2 / Example spliced isoformCCTCAATTCCCTTTTTACTATTTATCTAAACCGATCACAAAGTATCTACCCATCTCGTAGAAATTCAAACCCATATTTTGTTCTAACTACTCAACGTTTAACGTGCGGTGAAATGAACAAAAATGCTTTACTGAATGTTGTGTCAGATCAGAGGAGACAATACATATACCAAATTCAATACAAACAGGCGGAGGATCCAC
GAAATTCACCCCCTAACCTTCCCTGAATTCATATGCCAACTCTCGTCATGTTGCAAGCGCATACTTAAGGACATTTTCAGCAAGGTTTTCGAGTTTAATTTCAAAGGATCCGCGGGAATTTTCCAGTGTTTCGTGCATAATAGCTAGGGCAGGGTTGGAATTATTTTGTGCTTGCTATCGATGTTGGCGATCGAATTTTC
CACAGATGAAAATGGCTTCCAAGTCTCAGACAGCCAAAGACCTAGTGGAGGAAGCCAAGAAGCGGGCATTACTGCTTTCTATATGCGTCATCGGTCTCGCATATCTAATGTCCTTGACAAGCTCTTCAGTATGGATTAACATGCCTGCAGCAGTTCTCCTGATAGTTCTTGTTCGCTACATTTCATATGATGTTAGTGCT
CGTAGGAGGATTGCAGAGCAAGATACGCCATCTTCAGTGAACAACATTTTACAAAACCAAATGCCCCTTGATCATGCATCATCCCAACCTCACTCTGAACCAAGTGATTGGAGAAGGAAAGTTGATTCCCCAGTTGTTGAGGCAGCAATTGACAAACTAACAAAGCATCTTGTGTCTGAATGGATGACCAATCTGTGGTA
TGAGAAGATAACACCTGACAAAGATGCTCCAGAAGAGCTCACAGAAATCATGAATGGACTTCTTGGAGAAATTTGCTTGCGAGCCAAGGATGTGAATCTTATTGACCTTATCACCAGGGATACTGTCCATTTGGTGAGTGAGCATATAGATCTCTATCGAATAATACAGACCCAGATTGGCGAAGAAAAGTTGAGTAGCT
TGTCAAATGATGAAAGAGATGCGAAATTGAAGTTAACTCTAGCAGCAGATAACAAACTTCATCCAGCATTGTTTTCTGCCGAGGCAGAGCGCAAGTACGGTTTTTTTGCAGGTTTTACAGCGTTTTATGGATGGTCTTATGAGTTTAACATGTAAACCCGACGACCTGCAATGCAAATTTTTCCGATATATTGCGAGAGA
GCTTCTTGCCTGTGCAGTGATGCGTCCAATCATGAACTTAGCGAGTCCCAAGTTCATCAATGAACGAATTGAATCTGCTGTTTTATCTCTCCGAAATAGGAATGGAAAACTAACTAAGACCTCGGAGCCAGGGACAAAACAGAGTAAATCCTCAAGATCAAGGTTTACACCTGATCATTTCTCTGGTTTTCTAGATCGCT
CTATCGCGGGGGTTGAACTTGTGCAGCTTGGACCTAGCCATGGCAAAAAGTCTGTGGAAATTGATGGGACACAAAATGGAGCTTCCTCTACTTTTCATAATGAACCAAAGTATGCTTACTTTAAGTCATCAGCAGATATCCACCCAAAAAATCATATAATGCAATATTACCAACAAGAGGGTGAGACATCTGATATTGTG
ATTGCAGACAATTGGAAGTCTCAATCTGAAAATGTTGAGGGGATAGAAACACACAATGTTGACAGTAGAATCATCCAGGCACGGCGATCCCCAGGTGGGGAGTGGGGTCAGATGCTTGATATTATCTCAAGGAGAAAGAAACAGGCCCTTGCTCCTGAGCATTTTGAGAATATGTGGGCAAAAGGGCGTAATTACAAAAA
GAAAGAAATTGCAAATAGCTTATCAAAGCCTGTCAATCCTAGGGTATTGTCTGAGGCTTCTGATAAAACAAATCTCAGCAGGAAGCCATTTTATGGACAGCCAGAAAATTCAGGGATAAGTAAGAGCTCTATTCCAGAAAGTTGTCCCAGTTTTTCTCAACAGATAAAGCAATCTACTGATGACTGCAGTAGAGTAATTG
AAGATGCTGGCAGGCTGGAGGAACCTTCACCTGTTCATGAGCATATAAGACATGAAAAATCTTTTAAACAGCACATGGAAATTGTAGAAGAGAGTGGGAGTTCCTATACGAGTGAAGAGGACGAGAGTAGCAGTGTGACAGGGCTTGGTACCCCTGGTATTAAGGTATGGGATAGTAAAAGTAATAGAGCTGGTTCTGCA
TCACATCATCCCTTAGAAAATGATCAAGGTCATCACAAAAAGCAAGGAAACAAAAGTCAGCTCCACTATCGTAGGTTATATAAAACAGCATCAGGTCGGAAAAGGACTAGATCCAAGCGGGGTGTAGATAACTGGCAAGAACTGGAAAGAACATCCTTTTATTTGGGAGATGGTCTGGACATATTGAACACTGCTCAGGC
AGAGTCTATGAAAACTGAAGATCCAGAGGATGAGAGTGAAAATCAAAGTAGGGTGTCTAGTGGTACCTTGGCTTGTTCATCAGCTGCTGCTGTCTGCAGTTCTGGAACAGCCAATTCATCTGAAATGAAATCTGAGAGCTCTCACTTGGCTGCAGCTTTACCATCTCAGCAACTGCGATGCAAGGTATTGGGAGCAAACT
TTGTTAAAAGTGATTCCAAAACCATTGCTGTTTATTCTATCTCCGTGACAGATAATGAGAACCGTACATGGTCAATTAAAAGAAGATTTCGACATTTTGAGGAGCTACACCGACGGCTCAAGGTTTTGCCAGAATATTCATTACATCTGCCTCCCAAACGATTTTTATCGTCAAGTCTGGATGCTTCATTTGTATATGAA
CGCTGTAATTTGCTTGACAAGTATCTGAAGGATTTGCTTGTACTTCCAAATGTATCAGAATCTATTGAAGTCTGGGATTTTTTAAGTGTTGATTCACAGACTTATATGTTTTCGAATTCTCTCTCAATAATTGAGACCTTATCTGTTGACCTTGATAACAGACAGTATGGGAAACATGCAAAATTCAATGAAAATAACAC
AAAGAAAACAAAAGAAGCTTTAGATTGGAATTGTGATAAATCAGCATTAAGATGCATTGAGTCTGATTCTCATCTAGCAACAAGCCCTTCTGCTGAAGAATCTAGACAGCATGGTAGAGACACTGAACAGGAGCCTTCATTCTCTAAGAGCAAACAACAGGAAGGTATGCACGTTTCTTATTCAGAAAGTGATTCAGACA
TTGAGCAGCATGGAGGCAAAATACATTTAAAGATATCTGAAGGGAGTAGAAATAAGGCAAAGGCAGAGGTGAACATACTGAATGATGCTCCTGATGTACTTGGTATGGAGGACGATTCTATGGTACCATCTGAGTGGATACCACCAAATTTGAGTGTACCAATATTGAATTTGGTAGATGTCATTTTCCAACTACAGGAT
GGTGGTTGGATCAGGCGCCAAGCATTTTGGGTGGCAAAACAAGTACTACAGCTTGGCATGGGTGATGCGTTTGATGACTGGCTGATTGAGAAAGTTCAGCTTTTGCGAAAAGGAGAAGTCATCGCTTCAGCAATTAGTAAGATTGAACAGATTCTTTGGCCTGATGGTATATTCCTAACTAAACATCCTCGGCGCCAACA
CCCTCCAGCTTCCTCAAAAGGTGATTCATCCATACCACATATCCCACCATCTTCCTCAAAAGGTGATCCATCTGCTCCACATATCACACCAACTTCCTCAAAAGGTGATCCGTTTGCTTCACATATTAGAGGAACAGCAACATCACCTAAGGAAGCGGAACATGGACAACATGAGGAGAAAGATAACCAAAGTTTGTTGG
ATCAACAGATGGAAGAATCCCGTCGTGCAAAATTTGTCCGAGAGTTAATGATTGATAATGCCCCAGCTGCTCTTGTTGGTCTCGTAGGACGCAAGGAGTACGAGCGATGTGCCCGGGATATTTATTTCTTTCTTCAATCAGCAGTCTGTTTGAAGCAATTAGCTTACGGTCTTGTGGAGATGCTTCTCCTAGCAGCATTT
CCTGAGCTCCATAATATTGTGAGTTCTTGCCATACAGAAAAGGGAAATTTTGAGGTAATTTAACTTTCAAGAGATGAAATGATTCCATTTATTCGTTCCAATTGTTCTGGCTTTCAGTAGTGATTCATTGTGGCCATGGTTGATGTTGATTGGATGAGTTATGTTAAAATGGAATTGGTCCATTTGTTGAGTCCACAAAT
ATGCTTATGGATGACGTGTCCTTAGTATTCAAAGTTTGTGGGCATTTTTCCCCTTGTCAATATTGTATTTTGAGAACATAACCAAGAGCAATGGCAAATCTAGTGCCTGAAAGTATTCGTGGTTCGGTTGAATTAAGTTGTTATTGTTTTGCTCAGCTTTGCTCAATATCAAGCATTGAGTAAGTCCTTTAATAATATGG
TTTCAATTTTTGTAGTAGCTTATAATATAAATAAACAAAAGAATCCATGAATGGGCTCATACCCAAGTTATTACCTGGATGCGTCCTTAAGTGCTAAGTGTTTCCTGGGATTTTGCTGCTTGTCAATATTGTATTTTGAGAACTTAACTGAGAGCAAAGTCAAATCTAGTGCTTGCGAGTATTCTTGGTTTGGTTGAATC
AAGTTGTTATTGTTTTGTTCAGCTTTGCTTAATATCAGGCACCGAG
>TRINITY_DN123765_c0_g1_i13 from sample A2 / Example unspliced isoform:CCTCAATTCCCTTTTTACTATTTATCTAAACCGATCACAAAGTATCTACCCATCTCGTAGAAATTCAAACCCATATTTTGTTCTAACTACTCAACGTTTAACGTGCGGTGAAATGAACAAAAATGCTTTACTGAATGTTGTGTCAGATCAGAGGAGACAATACATATACCAAATTCAATACAAACAGGCGGAGGATCCAC
GAAATTCACCCCCTAACCTTCCCTGAATTCATATGCCAACTCTCGTCATGTTGCAAGCGCATACTTAAGGACATTTTCAGCAAGGTTTTCGAGTTTAATTTCAAAGGATCCGCGGGAATTTTCCAGTGTTTCGTGCATAATAGCTAGGGCAGGGTTGGAATTATTTTGTGCTTGCTATCGATGTTGGCGATCGAATTTTC
CACAGATGAAAATGGCTTCCAAGTCTCAGACAGCCAAAGACCTAGTGGAGGAAGCCAAGAAGCGGGCATTACTGCTTTCTATATGCGTCATCGGTCTCGCATATCTAATGTCCTTGACAAGCTCTTCAGTATGGATTAACATGCCTGCAGCAGTTCTCCTGATAGTTCTTGTTCGCTACATTTCATATGATGTTAGTGCT
CGTAGGAGGATTGCAGAGCAAGATACGCCATCTTCAGTGAACAACATTTTACAAAACCAAATGCCCCTTGATCATGCATCATCCCAACCTCACTCTGAACCAAGTGATTGGAGAAGGAAAGTTGATTCCCCAGTTGTTGAGGCAGCAATTGACAAACTAACAAAGCATCTTGTGTCTGAATGGATGACCAATCTGTGGTA
TGAGAAGATAACACCTGACAAAGATGCTCCAGAAGAGCTCACAGAAATCATGAATGGACTTCTTGGAGAAATTTGCTTGCGAGCCAAGGATGTGAATCTTATTGACCTTATCACCAGGGATACTGTCCATTTGGTGAGTGAGCATATAGATCTCTATCGAATAATACAGACCCAGATTGGCGAAGAAAAGTTGAGTAGCT
TGTCAAATGATGAAAGAGATGCGAAATTGAAGTTAACTCTAGCAGCAGATAACAAACTTCATCCAGCATTGTTTTCTGCTGAGGCAGAGCGCAAGgttggaggttgccttgcataaaagtttaaaactgacatataaactgcagctaaagtgccatatatatctttattcttgttagtttgtaacctgtatcagatcctg
ccttacgatggttcaaaggtcactttcataaaattaacatttatctgtagcttgaaatatggctgctattttgtatctgagaaatttgtaacctcttctgattcgaacctttaccagTACGGTTTTTTTGCAGGTTTTACAGCGTTTTATGGATGGTCTTATGAGTTTAACATGTAAACCCGACGACCTGCAATGCAAAT
TTTTCCGATATATTGCGAGAGAGCTTCTTGCCTGTGCAGTGATGCGTCCAATCATGAACTTAGCGAGTCCCAAGTTCATCAATGAACGAATTGAATCTGCTGTTTTATCTCTCCGAAATAGGAATGGAAAACTAACTAAGACCTCGGAGCCAGGGACAAAACAGAGTAAATCCTCAAGATCAAGGTTTACACCTGATCAT
TTCTCTGGTTTTCTAGATCGCTCTATCGCGGGGGTTGAACTTGTGCAGCTTGGACCTAGCCATGGCAAAAAGTCTGTGGAAATTGATGGGACACAAAATGGAGCTTCCTCTACTTTTCATAATGAACCAAAGTATGCTTACTTTAAGTCATCAGCAGATATCCACCCAAAAAATCATATAATGCAATATTACCAACAAGA
GGGTGAGACATCTGATATTGTGATTGCAGACAATTGGAAGTCTCAATCTGAAAATGTTGAGGGGATAGAAACACACAATGTTGACAGTAGAATCATCCAGGCACGGCGATCCCCAGGTGGGGAGTGGGGTCAGATGCTTGATATTATCTCAAGGAGAAAGAAACAGGCCCTTGCTCCTGAGCATTTTGAGAATATGTGGG
CAAAAGGGCGTAATTACAAAAAGAAAGAAATTGCAAATAGCTTATCAAAGCCTGTCAATCCTAGGGTATTGTCTGAGGCTTCTGATAAAACAAATCTCAGCAGGAAGCCATTTTATGGACAGCCAGAAAATTCAGGGATAAGTAAGAGCTCTATTCCAGAAAGTTGTCCCAGTTTTTCTCAACAGATAAAGCAATCTACT
GATGACTGCAGTAGAGTAATTGAAGATGCTGGCAGGCTGGAGGAACCTTCACCTGTTCATGAGCATATAAGACATGAAAAATCTTTTAAACAGCACATGGAAATTGTAGAAGAGAGTGGGAGTTCCTATACGAGTGAAGAGGACGAGAGTAGCAGTGTGACAGGGCTTGGTACCCCTGGTATTAAGGTATGGGATAGTAA
AAGTAATAGAGCTGGTTCTGCATCACATCATCCCTTAGAAAATGATCAAGGTCATCACAAAAAGCAAGGAAACAAAAGTCAGCTCCACTATCGTAGGTTATATAAAACAGCATCAGGTCGGAAAAGGACTAGATCCAAGCGGGGTGTAGATAACTGGCAAGAACTGGAAAGAACATCCTTTTATTTGGGAGATGGTCTGG
ACATATTGAACACTGCTCAGGCAGAGTCTATGAAAACTGAAGATCCAGAGGATGAGAGTGAAAATCAAAGTAGGGTGTCTAGTGGTACCTTGGCTTGTTCATCAGCTGCTGCTGTCTGCAGTTCTGGAACAGCCAATTCATCTGAAATGAAATCTGAGAGCTCTCACTTGGCTGCAGCTTTACCATCTCAGCAACTGCGA
TGCAAGGTATTGGGAGCAAACTTTGTTAAAAGTGATTCCAAAACCATTGCTGTTTATTCTATCTCCGTGACAGATAATGAGAACCGTACATGGTCAATTAAAAGAAGATTTCGACATTTTGAGGAGCTACACCGACGGCTCAAGGTTTTGCCAGAATATTCATTACATCTGCCTCCCAAACGATTTTTATCGTCAAGTCT
GGATGCTTCATTTGTATATGAACGCTGTAATTTGCTTGACAAGTATCTGAAGGATTTGCTTGTACTTCCAAATGTATCAGAATCTATTGAAGTCTGGGATTTTTTAAGTGTTGATTCACAGACTTATATGTTTTCGAATTCTCTCTCAATAATTGAGACCTTATCTGTTGACCTTGATAACAGACAGTATGGGAAACATG
CAAAATTCAATGAAAATAACACAAAGAAAACAAAAGAAGCTTTAGATTGGAATTGTGATAAATCAGCATTAAGATGCATTGAGTCTGATTCTCATCTAGCAACAAGCCCTTCTGCTGAAGAATCTAGACAGCATGGTAGAGACACTGAACAGGAGCCTTCATTCTCTAAGAGCAAACAACAGGAAGGTATGCACGTTTCT
TATTCAGAAAGTGATTCAGACATTGAGCAGCATGGAGGCAAAATACATTTAAAGATATCTGAAGGGAGTAGAAATAAGGCAAAGGCAGAGGTGAACATACTGAATGATGCTCCTGATGTACTTGGTATGGAGGACGATTCTATGGTACCATCTGAGTGGATACCACCAAATTTGAGTGTACCAATATTGAATTTGGTAGA
TGTCATTTTCCAACTACAGGATGGTGGTTGGATCAGGCGCCAAGCATTTTGGGTGGCAAAACAAGTACTACAGCTTGGCATGGGTGATGCGTTTGATGACTGGCTGATTGAGAAAGTTCAGCTTTTGCGAAAAGGAGAAGTCATCGCTTCAGCAATTAGTAAGATTGAACAGATTCTTTGGCCTGATGGTATATTCCTAA
CTAAACATCCTCGGCGCCAACACCCTCCAGCTTCCTCAAAAGGTGATTCATCCATACCACATATCCCACCATCTTCCTCAAAAGGTGATCCATCTGCTCCACATATCACACCAACTTCCTCAAAAGGTGATCCGTTTGCTTCACATATTAGAGGAACAGCAACATCACCTAAGGAAGCGGAACATGGACAACATGAGGAG
AAAGATAACCAAAGTTTGTTGGATCAACAGATGGAAGAATCCCGTCGTGCAAAATTTGTCCGAGAGTTAATGATTGATAATGCCCCAGCTGCTCTTGTTGGTCTCGTAGGACGCAAGGAGTACGAGCGATGTGCCCGGGATATTTATTTCTTTCTTCAATCAGCAGTCTGTTTGAAGCAATTAGCTTACGGTCTTGTGGA
GATGCTTCTCCTAGCAGCATTTCCTGAGCTCCATAATATTGTGAGTTCTTGCCATACAGAAAAGGGAAATTTTGAGGTAATTTAACTTTCAAGAGATGAAATGATTCCATTTATTCGTTCCAATTGTTCTGGCTTTCAGTAGTGATTCATTGTGGCCATGGTTGATGTTGATTGGATGAGTTATGTTAAAATGGAATTGG
TCCATTTGTTGAGTCCACAAATATGCTTATGGATGACGTGTCCTTAGTATTCAAAGTTTGTGGGCATTTTTCCCCTTGTCAATATTGTATTTTGAGAACATAACCAAGAGCAATGGCAAATCTAGTGCCTGAAAGTATTCGTGGTTCGGTTGAATTAAGTTGTTATTGTTTTGCTCAGCTTTGCTCAATATCAAGCATTG
AGTAAGTCCTTTAATAATATGGTTTCAATTTTTGTAGTAGCTTATAATATAAATAAACAAAAGAATCCATGAATGGGCTCATACCCAAGTTATTACCTGGATGCGTCCTTAAGTGCTAAGTGTTTCCTGGGATTTTGCTGCTTGTCAATATTGTATTTTGAGAACTTAACTGAGAGCAAAGTCAAATCTAGTGCTTGCGA
GTATTCTTGGTTTGGTTGAATCAAGTTGTTATTGTTTTGTTCAGCTTTGCTTAATATCAGGCACCGAG
Intron 2 GTGAATAGAA ... AATGACACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60.44 | 18 | 33 | 22 |
| A2 | 67.5 | 13 | 27 | 27 |
| A3 | 68.97 | 9 | 30 | 10 |
| A4 | 71.43 | 10 | 27 | 23 |
| A5 | 80.65 | 3 | 16 | 9 |
| A6 | 69.88 | 25 | 54 | 62 |
| A7 | 70.59 | 35 | 89 | 79 |
| A8 | 72.66 | 19 | 61 | 40 |
| A9 | 68.77 | 42 | 104 | 81 |
| A10 | 63.7 | 49 | 104 | 68 |
>TRINITY_DN43056_c0_g1_i2 from sample A6 / Example spliced isoformCTGCCCTCTATGTCTATATATAGCTGGCAATTCTTGGAAAATTAGAAAAGATGGCGATGAGTATAGTGACGAAACACAGCATATTAGCTCCCGCCTTACGCTTCTCATTACCAGCAGCACAACCAAGCATGGCTCTGCTCTGCAATCGTCAGCTTCATCTGCATCCTCTTAAGAGTTGGTGAAGAAAAAGTGTGTTCCAT
GTGAATCGAAGGACTTGAAACCCATGTCCATAGAAGTAGCAGAGGAGCTACTACAGCAGGTCCCAGGGTGGAACATCTCAAATGCAGATGGTAAACTTAAGTTGGAAAGAGCGTGGAAAGTGAAAAGCTTTATAAAAGGATTGGAATTTTTTAAACATGTAGCAGATATTGCTGAAGCAGAAGGTCATCATCCAGATCTT
CATCTTGTCAACTGGAATAATGCAAGTATAAACATATGGACACATTCAATTGGTGGGTTAACGGAAAACGACTTTATCCTTGCAGCAAAGATTGGTTCTCTTGATGTGGAACCATTTTTAAGAAAGAAAGTTGCAAAGAACTCAACCACGGTGCCTTGAAGAATCATTTTTGTTCTATCAGTAAACTGGGTATGCGGACC
TAGCAAAGCAGCAGTATACAATATCCATACAAATGTTTTTGAGATGGGAAATCTGTTCTTGCTGTCTTCAGTAACAACAATGCTATTGCTAGCAATTCACACAGAATTTCTTAATTTTTAGCGTTGGAATGAAAGATGGGTCATCCTTCAGGCATTTAAAAGCTATAATCACAAAGTGTGTTTTTTTGTTCCACATATCA
GCAGTATACAATATCCATGCAAATGTTTTTGAAATGGGAAATCTGTTCTTGCTGTTTTCATTAACAACAATGTTAATTCCAGCAATTTACACAGGATTTCTTAATTTTTTTTTCATTGGAATGAAAAATGGGTCATCCTTCAGGCATTTAAAAGCTATAATCACAAAATGTTTATTATTTTTCCACATCATAATTATAAT
GACCCAAAAATTTGGGGCTTTGTTATATATTGTTG
>TRINITY_DN43056_c0_g1_i6 from sample A6 / Example unspliced isoform:CTGCCCTCTATGTCTATATATAGCTGGCAATTCTTGGAAAATTAGAAAAGATGGCGATGAGTATAGTGACGAAACACAGCATATTAGCTCCCGCCTTACGCTTCTCATTACCAGCAGCACAACCAAGCATGGCTCTGCTCTGCAATCGTCAGCTTCATCTGCATCCTCTTAAGgtgaatagaaattcaggcaatttgatt
ttggatggaaggtcatgtcccattcgtcatgaaatgcttacactaaaagtgtcaccaactggaaagtatttgcggttggttactaaatgttctcaatctaatgacacagAGTTGGTGAAGAAAAAGTGTGTTCCATGTGAATCGAAGGACTTGAAACCCATGTCCATAGAAGTAGCAGAGGAGCTACTACAGCAGGTCCC
AGGGTGGAACATCTCAAATGCAGATGGTAAACTTAAGTTGGAAAGAGCGTGGAAAGTGAAAAGCTTTATAAAAGGATTGGAATTTTTTAAACATGTAGCAGATATTGCTGAAGCAGAAGGTCATCATCCAGATCTTCATCTTGTCAACTGGAATAATGCAAGTATAAACATATGGACACATTCAATTGGTGGGTTAACGG
AAAACGACTTTATCCTTGCAGCAAAGATTGGTTCTCTTGATGTGGAACCATTTTTAAGAAAGAAAGTTGCAAAGAACTCAACCACGGTGCCTTGAAGAATCATTTTTGTTCTATCAGTAAACTGGGTATGCGGACCTAGCAAAGCAGCAGTATACAATATCCATACAAATGTTTTTGAGATGGGAAATCTGTTCTTGCTG
TCTTCAGTAACAACAATGCTATTGCTAGCAATTCACACAGAATTTCTTAATTTTTAGCGTTGGAATGAAAGATGGGTCATCCTTCAGGCATTTAAAAGCTATAATCACAAAGTGTGTTTTTTTGTTCCACATATCAGCAGTATACAATATCCATGCAAATGTTTTTGAAATGGGAAATCTGTTCTTGCTGTTTTCATTAA
CAACAATGTTAATTCCAGCAATTTACACAGGATTTCTTAATTTTTTTTTCATTGGAATGAAAAATGGGTCATCCTTCAGGCATTTAAAAGCTATAATCACAAAATGTTTATTATTTTTCCACATCATAATTATAATGACCCAAAAATTTGGGGCTTTGTTATATATTGTTG
Intron 3 GTATTTTCTC ... TTTCTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.52 | 44 | 6 | 14 |
| A2 | 22.67 | 29 | 9 | 8 |
| A3 | 21.67 | 47 | 13 | 13 |
| A4 | 24.53 | 40 | 14 | 12 |
| A5 | 21.74 | 18 | 7 | 3 |
| A6 | 9.09 | 5 | 1 | 0 |
| A7 | 20 | 14 | 5 | 2 |
| A8 | 15.38 | 11 | 1 | 3 |
| A9 | 20.75 | 21 | 5 | 6 |
| A10 | 15.38 | 11 | 4 | 0 |
>TRINITY_DN130187_c0_g1_i18 from sample A1 / Example spliced isoformAAAGTACCTACCCATCTCGTAGAAATTCAAACCCATATTTTGTTCTAACTACTCAACGTTTAACGTGCGGTGAAATGAACAAAAATGCTTTACTGAATGTCAGAGCAGAGCAGAGGAGACAATACATATACCAAATTCAATACAAACAGGCGGAGGATCCACGAAATTCACCCCCTAACCTTCCCTGAATTCATATGCCA
ACTCTCGTCATGTTGCAAGCGCATAGTTAAGGACATTTTCAGCAAGGTTTTCGAGTTTAATTTCAAAGGATCCGCGGGAATTTTCCAGTGTTTCGTGCATAATAGCTAGGGCAGGGTTGGAATTATTTTGTGCTTGCTATCGATGTTGGCGATCGAATTTTCCACAGATGAAAATGGCTTCCAAGTCTCAGACAGCCAAA
GACCTAGTGGAGGAAGCCAAGAAGCGGGCATTATTGCTTTCTATATGCGTCATCGGTCTCGCATATCTAATGTCCTTGACAAGCTCTTCAGTATGGATTAACATGCCTGCAGCAGTTCTCCTGATAGTTCTTGTTCGCTACATTTCATATGATGTTAGTGCTCGTAGGAGGATTGCAGAGCAAGATACGCCATCTTCAGT
GAACAACATTTTACAAAACCAAATGCCCCTTGATCATGCATCATCCCAACCTCACTCTGAACCAAGTGATTGGAGAAGGAAAGTTGATTCCCCAGTTGTTGAGGCAGCAATTGACAAACTAACAAAGCATCTTGTGTCTGAATGGATGACCAATCTGTGGTATGAGAAGATAACACCTGACAAAGATGCTCCAGAAGAGC
TCACAGAAATCATGAATGGACTTCTTGGAGAAATTTGCTTGCGAGCCAAGGATGTGAATCTTATTGACCTTATCACCAGGGATACTGTCCATTTGGTGAGTGCGCATATAGATCTCTATCGAATAATACAGACCCAGATTGGCGAAGAAAAGTTGAGTAGCTTGTCAAATGATGAAAGAGATGCGAAATTGAAGTTAACT
CTAGCAGCAGATAACAAACTTCATCCAGCATTGTTTTCTGCCGAGGCAGAGCGCAAGGTTTTACAGCGTTTTATGGATGGTCTTATGAGTTTAACATGTAAACCCGACGACCTGCAATGCAAATTTTTCCGATATATTGCGAGAGAGCTTCTTGCCTGTGCAGTGATGCGTCCAATCATGAACTTAGCGAGTCCCAAGTT
CATCAATGAACGAATTGAATCTGCTGTTTTATCTCTCCGAAATAGGAATGGAAAACTAACTAAGACCTCGGAGCCAGGGACAAAACAGAGTAAATCCTCAAGATCAAGGTTTACACCTGATCATTTCTCTGGTTTTCTAGATCGCTCTATCGCGGGGGTTGAACTTGTGCAGCTTGGACCTAGCCATGGCAAAAAGTCTG
TGGAAATTGATGGGACACAAAATGGAGCTTCCTCTACTTTTCATAATGAACCAAAGTATGCTTACTTTAAGTCATCAGCAGATATCCACCCAAAAAATCATATAGTGCAATATTACCAACAAGAGGGTGAGACATCTGATATTGTGATTGCAGACAATTGGAAGTCTCAATCTGAAAATGTTGAGGGGATAGAAACACAC
AATGTTGACAGTAGAATCATCCAGGCACGGCGATCCCCAGGTGGGGAGTGGGGTCAGATGCTTGATATTATCTCAAGGAGAAAGAAACAGGCCCTTGCTCCTGAGCATTTTGAGAATATGTGGGCAAAAGGGCGTAATTACAAAAAGAAAGAAATTGCAAATAGCTTATCAAAGCCTGTCAATCCTAGGGTATTGTCTGA
GGCTTCTGATAAAACAAATCTCAGCAGGAAGCCATTTTATGGACAGCCAGAAAATTCAGGGATAAGTAAGAGCTCTATTCCAGAAAGTTGTCCCAGTTTTTCTCAACAGATAAAGCAATCTACTGATGACTGCAGTAGAGTAATTGAAGATGCTGGCAGGCTGGAGGAACCTTCACCTGTTCATGAGCATATAAGACATG
AAAAATCTTTTAAACAGCACATGGAAATTGTAGAAGAGAGTGGGAGTTCCTATACGAGTGAAGAGGACGAGAGTAGCAGTGTGACAGGGCTTGGTACCCCTGGTATTAAGGTATGGGATAGTAAAAGTAATAGAGCTGGTTCTGCATCACATCATCCCTTAGAAAATGATCAAGGTCATCACAAAAAGCAAGGAAACAAA
AGTCAGCTCCACTATCGTAGGTTATATAAAACAGCATCAGGTCGGAAAAGGACTAGATCCAAGCGGGGTGTAGATAACTGGCAAGAACTGGAAAGAACATCCTTTTATTTGGGAGATGGTCTGGACATATTGAACACTGCTCAGGCAGAGTCTATGAAAACTGAAGATCCAGAGGATGAGAGTGAAAATCAAAGTAGGGT
GTCTAGTGGTACCTTGGCTTGTTCATCAGCTGCTGCTGTCTGCAGTTCTGGAACAGCCAATTCATCTGAAATGAAATCTGAGAGCTCTCACTTGGCTGCAGCTTTACCATCTCAGCAACTGCGATGCAAGGTATTGGGAGCAAACTTTGTTAAAAGTGATTCCAAAACCATTGCTGTTTATTCTATCTCCGTGACAGATA
ATGAGAACCGTACATGGTCAATTAAAAGAAGATTTCGACATTTTGAGGAGCTACACCGACGGCTCAAGGTTTTGCCAGAATATTCATTACATCTGCCTCCCAAACGATTTTTATCGTCAAGTCTGGATGCTTCATTTGTATATGAACGCTGTAATTTGCTTGACAAGTATCTGAAGGATTTGCTTGTACTTCCAAATGTA
TCAGAATCTATTGAAGTCTGGGATTTTTTAAGTGTTGATTCACAGACTTATATGTTTTCGAATTCTCTCTCAATAATTGAGACCTTATCTGTTGACCTTGATAACAGACAGTATGGGAAACATGCAAAATTCAATGAAAATAACACAAAGAAAACAAAAGAAGCTTTAGATTGGAATTGTGATAAATCAGCATTAAGATG
CATTGAGTCTGATTCTCATCTAGCAACAAGCCCTTCTGCTGAAGAATCTAGACAGCATGGTAGAGACACTGAACAGGAGCCTTCATTCTCTAAGAGCAAACAACAGGAAGGTATGCACGTTTCTTATTCAGAAAGTGATTCAGACATTGAGCAGCATGGAGGCAAAATACATTTAAAGATATCTGAAGGGAGTAGAAATA
AGGCAAAGGCAGAGGTGAACATACTGAATGATGCTCCTGATGTACTTGGTATGGAGGATGATTCTATGGTACCATCTGAGTGGATACCACCAAATTTGAGTGTACCAATATTGAATTTGGTAGATGTCATTTTCCAACTACAGGATGGTGGTTGGATCAGGCGCCAAGCATTTTGGGTGGCAAAACAAGTACTACAGCTT
GGCATGGGTGATGCGTTTGATGACTGGCTGATTGAGAAAGTTCAGCTTTTGCGAAAAGGAGAAGTCATCGCTTCAGCAATTAGTAAGATTGAACAGATTCTTTGGCCTGATGGTATATTCCTAACTAAACATCCTCGGCGCCAACACCCTCCAGCTTCCTCAAAAGGTGATTCATCCATACCACATATCCCACCATCTTC
CTCAAAAGGTGATCCATCTGCTCCACATATCACACCAACTTCCTCAAAAGGTGATCCGTTTGCTTCACATATTAGAGGAACAGCAACATCACCTAAGGAAGCGGAACATGGACAACATGAGGAGAAAGATAACCAAAGTTTGTTGGATCAACAGATGGAAGAATCCCGTCGTGCAAAATTTGTCCGAGAGTTAATGATTG
ATAATGCCCCAGCTGCTCTTGTTGGTCTCGTAGGACGCAAGGAGTACGAGCGATGTGCCCGGGATATTTATTTCTTTCTTCAATCAGCAGTCTGTTTGAAGCAATTAGCTTACGGTCTTGTGGAGATGCTTCTCCTAGCAGCATTTCCTGAGCTCCATAATATTGTGAGTTCTTGCCATACAGAAAAGGGAAATTTTGAG
GTAATTTAACTTTCAAGAGATGAAATGATTCCATTTATTCGTTCCAATTGTTCTGGCTTTCAGTAGTGATTCATTGTGGCCATGGTTGATGTTGATTGGATGAGTTATGTTAAAATCGAATTGGTCCATTTGTTGAGTCCACAAATATGCTTATGGATGACGTGTCCTTAGTATTCAAAGTTTGTGGGCATTTTTCCCCT
TGTCAATATTGTATTTTGAGAACATAACCAAGAGCAATGGCAAATCTAGTGCCTGAAAGTATTCGTGGTTCGGTTGAATTAAGTTGTTATTGTTTTGCTCAGCTTTGCTCAATATCAAGCATTGAGTAAGTCCTTTAATAATATGGTTTCAATTTTTGTAGTAGCTTATAATATAAATAAACAAAAGAATCCATGAATGG
GCTCATACCCAAGTTATTACCTGGATGCGTCCTTAAGTGCTAAGTGTTTCCTGGGATTTTGCTGCTTGTCAATATTGTATTTTGAGAACATATCTGAGAGCAAAGTCAAATCTAGTGCTTGCAAGTATTCGTGGTTCTGTTGAATCAAGTTATTGTTTTTCAGCTTTTCTCAATATCAGG
>TRINITY_DN130187_c0_g1_i12 from sample A1 / Example unspliced isoform:AAAGTACCTACCCATCTCGTAGAAATTCAAACCCATATTTTGTTCTAACTACTCAACGTTTAACGTGCGGTGAAATGAACAAAAATGCTTTACTGAATGTCAGAGCAGAGCAGAGGAGACAATACATATACCAAATTCAATACAAACAGGCGGAGGATCCACGAAATTCACCCCCTAACCTTCCCTGAATTCATATGCCA
ACTCTCGTCATGTTGCAAGCGCATAGTTAAGGACATTTTCAGCAAGGTTTTCGAGTTTAATTTCAAAGGATCCGCGGGAATTTTCCAGTGTTTCGTGCATAATAGCTAGGGCAGGGTTGGAATTATTTTGTGCTTGCTATCGATGTTGGCGATCGAATTTTCCACAGATGAAAATGGCTTCCAAGTCTCAGACAGCCAAA
GACCTAGTGGAGGAAGCCAAGAAGCGGGCATTATTGCTTTCTATATGCGTCATCGGTCTCGCATATCTAATGTCCTTGACAAGCTCTTCAGTATGGATTAACATGCCTGCAGCAGTTCTCCTGATAGTTCTTGTTCGCTACATTTCATATGATGTTAGTGCTCGTAGGAGGATTGCAGAGCAAGATACGCCATCTTCAGT
GAACAACATTTTACAAAACCAAATGCCCCTTGATCATGCATCATCCCAACCTCACTCTGAACCAAGTGATTGGAGAAGGAAAGTTGATTCCCCAGTTGTTGAGGCAGCAATTGACAAACTAACAAAGCATCTTGTGTCTGAATGGATGACCAATCTGTGGTATGAGAAGATAACACCTGACAAAGATGCTCCAGAAGAGC
TCACAGAAATCATGAATGGACTTCTTGGAGAAATTTGCTTGCGAGCCAAGGATGTGAATCTTATTGACCTTATCACCAGGGATACTGTCCATTTGGTGAGTGCGCATATAGATCTCTATCGAATAATACAGACCCAGATTGGCGAAGAAAAGTTGAGTAGCTTGTCAAATGATGAAAGAGATGCGAAATTGAAGTTAACT
CTAGCAGCAGATAACAAACTTCATCCAGCATTGTTTTCTGCCGAGGCAGAGCGCAAGGTTTTACAGCGTTTTATGGATGGTCTTATGAGTTTAACATGTAAACCCGACGACCTGCAATGCAAATTTTTCCGATATATTGCGAGAGAGCTTCTTGCCTGTGCAGTGATGCGTCCAATCATGAACTTAGCGAGTCCCAAgta
ttttctcgtaatgcttgttccatagtcactagtttttgtagatgttcctgagattcagtctcattgattaatcattagacattatataaatgttttaagttattgtagtcactttgatatgtatattatttgatcattgtctgcaatttatgatctttctggcagGTTCATCAATGAACGAATTGAATCTGCTGTTTTAT
CTCTCCGAAATAGGAATGGAAAACTAACGAAGGCCTCGGAGCCAGGGACAAAACAGAGTAAATCCTCAAGATCAAGGTTTACACCTGATCATTTCTCTGGTTTTCTAGATCGCTCTATCGCGGGGGTTGAACTTGTGCAGCTTGGACCTAGCCATGGCAAAAAGTCTGTGGAAATTGATGGGACACAAAATGGAGCTTCC
TCTACTTTTCATAATGAACCAAAGTATGCTTACTTTAAGTCATCAGCAGATATCCACCCAAAAAATCATATAGTGCAATATTACCAACAAGAGGGTGAGACATCTGATATTGTGATTGCAGACAATTGGAAGTCTCAATCTGAAAATGTTGAGGGGATAGAAACACACAATGTTGACAGTAGAATCATCCAGGCACGGCG
ATCCCCAGGTGGGGAGTGGGGTCAGATGCTTGATATTATCTCAAGGAGAAAGAAACAGGCCCTTGCTCCTGAGCATTTTGAGAATATGTGGGCAAAAGGGCGTAATTACAAAAAGAAAGAAATTGCAAATAGCTTATCAAAGCCTGTCAATCCTAGGGTATTGTCTGAGGCTTCTGATAAAACAAATCTCAGCAGGAAGC
CATTTTATGGACAGCCAGAAAATTCAGGGATAAGTAAGAGCTCTATTCCAGAAAGTTGTCCCAGTTTTTCTCAACAGATAAAGCAATCTACTGATGACTGCAGTAGAGTAATTGAAGATGCTGGCAGGCTGGAGGAACCTTCACCTGTTCATGAGCATATAAGACATGAAAAATCTTTTAAACAGCACATGGAAATTGTA
GAAGAGAGTGGGAGTTCCTATACGAGTGAAGAGGACGAGAGTAGCAGTGTGACAGGGCTTGGTACCCCTGGTATTAAGGTATGGGATAGTAAAAGTAATAGAGCTGGTTCTGCATCACATCATCCCTTAGAAAATGATCAAGGTCATCACAAAAAGCAAGGAAACAAAAGTCAGCTCCACTATCGTAGGTTATATAAAAC
AGCATCAGGTCGGAAAAGGACTAGATCCAAGCGGGGTGTAGATAACTGGCAAGAACTGGAAAGAACATCCTTTTATTTGGGAGATGGTCTGGACATATTGAACACTGCTCAGGCAGAGTCTATGAAAACTGAAGATCCAGAGGATGAGAGTGAAAATCAAAGTAGGGTGTCTAGTGGTACCTTGGCTTGTTCATCAGCTG
CTGCTGTCTGCAGTTCTGGAACAGCCAATTCATCTGAAATGAAATCTGAGAGCTCTCACTTGGCTGCAGCTTTACCATCTCAGCAACTGCGATGCAAGGTATTGGGAGCAAACTTTGTTAAAAGTGATTCCAAAACCATTGCTGTTTATTCTATCTCCGTGACAGATAATGAGAACCGTACATGGTCAATTAAAAGAAGA
TTTCGACATTTTGAGGAGCTACACCGACGGCTCAAGGTTTTGCCAGAATATTCATTACATCTGCCTCCCAAACGATTTTTATCGTCAAGTCTGGATGCTTCATTTGTATATGAACGCTGTAATTTGCTTGACAAGTATCTGAAGGATTTGCTTGTACTTCCAAATGTATCAGAATCTATTGAAGTCTGGGATTTTTTAAG
TGTTGATTCACAGACTTATATGTTTTCGAATTCTCTCTCAATAATTGAGACCTTATCTGTTGACCTTGATAACAGACAGTATGGGAAACATGCAAAATTCAATGAAAATAACACAAAGAAAACAAAAGAAGCTTTAGATTGGAATTGTGATAAATCAGCATTAAGATGCATTGAGTCTGATTCTCATCTAGCAACAAGCC
CTTCTGCTGAAGAATCTAGACAGCATGGTAGAGACACTGAACAGGAGCCTTCATTCTCTAAGAGCAAACAACAGGAAGGTATGCACGTTTCTTATTCAGAAAGTGATTCAGACATTGAGCAGCATGGAGGCAAAATACATTTAAAGATATCTGAAGGGAGTAGAAATAAGGCAAAGGCAGAGGTGAACATACTGAATGAT
GCTCCTGATGTACTTGGTATGGAGGATGATTCTATGGTACCATCTGAGTGGATACCACCAAATTTGAGTGTACCAATATTGAATTTGGTAGATGTCATTTTCCAACTACAGGATGGTGGTTGGATCAGGCGCCAAGCATTTTGGGTGGCAAAACAAGTACTACAGCTTGGCATGGGTGATGCGTTTGATGACTGGCTGAT
TGAGAAAGTTCAGCTTTTGCGAAAAGGAGAAGTCATCGCTTCAGCAATTAGTAAGATTGAACAGGTGACTTCAACATGACAGAATAACTGCCACCCAATGTTGATGTCAGCATGTGGGTTCCAGTTGGCAGATACCTGCAGGCCTAATTAAGCAAATATATTTGTAGGCAGTGAACGATGTGGCTTATTTTATACTTTTT
ATAATTTTCCTCCCTTAAAACTGTATTTTATTTGTTTTTACTTTGCTTGTTTTTAAGTAGCATGGACCCTTTGTTCCATTTATCTTTGAGATTTGATTCACTTTTATATTCCCCCACTTCTATGATCAACATATGTATTGACTACTAGTAATGCCAAGAAATGTCGACAAGGAGGAAGGCTTCATGTTCATTAGCTGGTA
TTACTATTTGTCCTGGTAAATTATGTGATCTTGTGTTGTTACTTTGCAACCTACATAATAAGGGTCAGGATACAAGCTATAATGACAGATGTATATTGAGAGTGC
Intron 4 GCAAGTATGA ... TCTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.04 | 85 | 37 | 26 |
| A2 | 27.61 | 59 | 29 | 16 |
| A3 | 22.93 | 79 | 26 | 21 |
| A4 | 18.84 | 56 | 17 | 9 |
| A5 | 29.58 | 25 | 10 | 11 |
| A6 | 25 | 30 | 9 | 11 |
| A7 | 24.75 | 76 | 24 | 26 |
| A8 | 22.77 | 39 | 12 | 11 |
| A9 | 25.32 | 59 | 20 | 20 |
| A10 | 27.91 | 62 | 27 | 21 |
>TRINITY_DN109330_c0_g1_i1 from sample A5 / Example spliced isoformACCTCAATTCCCTTTTTACTATTTATCTAAACCGATCACAAAGTATCTACCCATCTCGTAGAAATTCAAACCCATATTTTGTTCTAACTACTCAACGTTTAACGTGCGGTGAAATGAACAAAAATGCTTTACTGAATGTCAGAGCAGAGCAGAGGAGACAATACATATACCAAATTCAATACAAACAGGCGGAGGATCCA
CGAAATTCACCCCCTAACCTTCCCTGAATTCATATGCCAACTCTCGTCATGTTGCAAGCGCATAGTTAAGGACATTTTCAGCAAGGTTTTCGAGTTTAATTTCAAAGGATCCGCGGGAATTTTCCAGTGTTTCGTGCATAATAGCTAGGGCAGGGTTGGAATTATTTTGTGCTTGCTATCGATGTTGGCGATCGAATTTT
CCACAGATGAAAATGGCTTCCAAGTCTCAGACAGCCAAAGACCTAGTGGAGGAAGCCAAGAAGCGGGCATTATTGCTTTCTATATGCGTCATCGGTCTCGCATATCTAATGTCCTTGACAAGCTCTTCAGTATGGATTAACATGCCTGCAGCAGTTCTCCTGATAGTTCTTGTTCGCTACATTTCATATGATGTTAGTGC
TCGTAGGAGGATTGCAGAGCAAGATACGCCATCTTCAGTGAACAACATTTTACAAAACCAAATGCCCCTTGATCATGCATCATCCCAACCTCACTCTGAACCAAGTGATTGGAGAAGGAAAGTTGATTCCCCAGTTGTTGAGGCAGCAATTGACAAACTAACAAAGCATCTTGTGTCTGAATGGATGACCAATCTGTGGT
ATGAGAAGATAACACCTGACAAAGATGCTCCAGAAGAGCTCACAGAAATCATGAATGGACTTCTTGGAGAAATTTGCTTGCGAGCCAAGGATGTGAATCTTATTGACCTTATCACCAGGGATACTGTCCATTTGGTGAGTGAGCATATAGATCTCTATCGAATAATACAGACCCAGATTGGCGAAGAAAAGTTGAGTAGC
TTGTCAAATGATGAAAGAGATGCGAAATTGAAGTTAACTCTAGCAGCAGATAACAAACTTCATCCAGCATTGTTTTCTGCTGAGGCAGAGCGCAAGGTTGGAGGTTGCCTTGCATAAAAGTTTAAAACTGACATATAAACTGCAGCTAAAGTGCCATATATATCTTTATTCTTGTTAGTTTGTAACCTGTATCAGATCCT
GCCTTACGATGGTTCAAAGGTCACTTTCATAAAATTAACATTTATCTGTAGCTTGAAATATGGCTGCTATTTTGTATCTGAGAAATTTGTAACCTCTTCTGATTCGAACCTTTACCAGTACGGTTTTTTTGCAGGTTTTACAGCGTTTTATGGATGGTCTTATGAGTTTAACATGTAAACCCGACGACCTGCAATGCAAA
TTTTTCCGATATATTGCGAGAGAGCTTCTTGCCTGTGCAGTGATGCGTCCAATCATGAACTTAGCGAGTCCCAAGTTCATCAATGAACGAATTGAATCTGCTGTTTTATCTCTCCGAAATAGGAATGGAAAACTAACGAAGGCCTCGGAGCCAGGGACAAAACAGAGTAAATCCTCAAGATCAAGGTTTACACCTGATCA
TTTCTCTGGTTTTCTAGATCGCTCTATCGCGGGGGTTGAACTTGTGCAGCTTGGACCTAGCCATGGCAAAAAGTCTGTGGAAATTGATGGGACACAAAATGGAGCTTCCTCTACTTTTCATAATGAACCAAAGTATGCTTACTTTAAGTCATCAGCAGATATCCACCCAAAAAATCATATAGTGCAATATTACCAACAAG
AGGGTGAGACATCTGATATTGTGATTGCAGACAATTGGAAGTCTCAATCTGAAAATGTTGAGGGGATAGAAACACACAATGTTGACAGTAGAATCATCCAGGCACGGCGATCCCCAGGTGGGGAGTGGGGTCAGATGCTTGATATTATCTCAAGGAGAAAGAAACAGGCCCTTGCTCCTGAGCATTTTGAGAATATGTGG
GCAAAAGGGCGTAATTACAAAAAGAAAGAAATTGCAAATAGCTTATCAAAGCCTGTCAATCCTAGGGTATTGTCTGAGGCTTCTGATAAAACAAATCTCAGCAGGAAGCCATTTTATGGACAGCCAGAAAATTCAGGGATAAGTAAGAGCTCTATTCCAGAAAGTTGTCCCAGTTTTTCTCAACAGATAAAGCAATCTAC
TGATGACTGCAGTAGAGTAATTGAAGATGCTGGCAGGCTGGAGGAACCTTCACCTGTTCATGAGCATATAAGACATGAAAAATCTTTTAAACAGCACATGGAAATTGTAGAAGAGAGTGGGAGTTCCTATACGAGTGAAGAGGACGAGAGTAGCAGTGTGACAGGGCTTGGTACCCCTGGTATTAAGGTATGGGATAGTA
AAAGTAATAGAGCTGGTTCTGCATCACATCATCCCTTAGAAAATGATCAAGGTCATCACAAAAAGCAAGGAAACAAAAGTCAGCTCCACTATCGTAGGTTATATAAAACAGCATCAGGTCGGAAAAGGACTAGATCCAAGCGGGGTGTAGATAACTGGCAAGAACTGGAAAGAACATCCTTTTATTTGGGAGATGGTCTG
GACATATTGAACACTGCTCAGGCAGAGTCTATGAAAACTGAAGATCCAGAGGATGAGAGTGAAAATCAAAGTAGGGTGTCTAGTGGTACCTTGGCTTGTTCATCAGCTGCTGCTGTCTGCAGTTCTGGAACAGCCAATTCATCTGAAATGAAATCTGAGAGCTCTCACTTGGCTGCAGCTTTACCATCTCAGCAACTGCG
ATGCAAGGTATTGGGAGCAAACTTTGTTAAAAGTGATTCCAAAACCATTGCTGTTTATTCTATCTCCGTGACAGATAATGAGAACCGTACATGGTCAATTAAAAGAAGATTTCGACATTTTGAGGAGCTACACCGACGGCTCAAGGTTTTGCCAGAATATTCATTACATCTGCCTCCCAAACGATTTTTATCGTCAAGTC
TGGATGCTTCATTTGTATATGAACGCTGTAATTTGCTTGACAAGTATCTGAAGGATTTGCTTGTACTTCCAAATGTATCAGAATCTATTGAAGTCTGGGATTTTTTAAGTGTTGATTCACAGACTTATATGTTTTCGAATTCTCTCTCAATAATTGAGACCTTATCTGTTGACCTTGATAACAGACAGTATGGGAAACAT
GCAAAATTCAATGAAAATAACACAAAGAAAACAAAAGAAGCTTTAGATTGGAATTGTGATAAATCAGCATTAAGATGCATTGAGTCTGATTCTCATCTAGCAACAAGCCCTTCTGCTGAAGAATCTAGACAGCATGGTAGAGACACTGAACAGGAGCCTTCATTCTCTAAGAGCAAACAACAGGAAGGTATGCACGTTTC
TTATTCAGAAAGTGATTCAGACATTGAGCAGCATGGAGGCAAAATACATTTAAAGATATCTGAAGGGAGTAGAAATAAGGCAAAGGCAGAGGTGAACATACTGAATGATGCTCCTGATGTACTTGGTATGGAGGATGATTCTATGGTACCATCTGAGTGGATACCACCAAATTTGAGTGTACCAATATTGAATTTGGTAG
ATGTCATTTTCCAACTACAGGATGGTGGTTGGATCAGGCGCCAAGCATTTTGGGTGGCAAAACAAGTACTACAGCTTGGCATGGGTGATGCGTTTGATGACTGGCTGATTGAGAAAGTTCAGCTTTTGCGAAAAGGAGAAGTCATTGCTTCAGCAATTAGTAAGATTGAACAGATTCTTTGGCCTGATGGTATATTCCTA
ACTAAACATCCTCGGCGCCAACACCCTCCAGCTTCCTCAAAAGGTGATTCATCCATACCACATATCCCACCATCTTCCTCAAAAGGTGATCCATCTGCTCCACATATCACACCAACTTCCTCAAAAGGTGATCCGTTTGCTCCACATATTAGAGGAACAGCAACATCACCTAAGGAAGCGGAACATGGACAACATGAGGA
GAAAGATAACCAAAGTTTGTTGGATCAACAGATGGAAGAATCCCGTCGTGCAAAATTTGTCCGAGAGTTAATGATTGATAATGCCCCAGCTGCTCTTGTTGGTCTCGTAGGACGCAAGGAGTACGAGCGATGTGCCCGGGATATTTATTTCTTTCTTCAATCAGCAGTCTGTTTGAAGCAATTAGCTTACGGTCTTGTGG
AGATGCTTCTCCTAGCAGCATTTCCTGAGCTCCATAATATTGTGAGTTCTTGCCATACAGAAAAGGGAAATTTTGAGGTAATTTAACTTTCAAGAGATGAAATGATTCCATTTATTCGTTCCAATTGTTCTGGCTTTCAGTAGTGATTCATTGTGGCCATGGTTGATGTTGATTGGATGAGTTATGTTAAAATCGAATTG
GTCCATTTGTTGAGTCCACAAATGTGCTTATGGATGACGTGTCCTTAGTATTCAAAGTTTGTGGGCATTTTTCCCCTTGTCAATATTGTATTTTGAGAACATAACCAAGAGCAATGGCAAATCTAGTGCCTGAAAGTATTCATGGTTCGGTTGAATTAAGTTGTTATTGTTTTGCTCAGCTTTGCTCAATATCAAGCATT
GAGTAAGTCCTTTAATAATATGGTTTCAATTTTTGTAGTAGCTTATAATATAAATAAACAAAAGAATCCATGAATGGGCTCATACCCAAGTTATTACCTGGATGCGTCCTTAAGTGCTAAGTGTTTCCTGGGATTTTGCTGCTTGTCAATATTGTATTTTGAGAACATATCTGAGAGCAAAGTCAAATCTAGTGCTTGCA
AGTATTCGTGGTTCTGTTGAATCAAGTTATTGTTTTTCAGCTTTTCTCAATATCAGGCGA
>TRINITY_DN109330_c0_g1_i6 from sample A5 / Example unspliced isoform:ACCTCAATTCCCTTTTTACTATTTATCTAAACCGATCACAAAGTATCTACCCATCTCGTAGAAATTCAAACCCATATTTTGTTCTAACTACTCAACGTTTAACGTGCGGTGAAATGAACAAAAATGCTTTACTGAATGTCAGAGCAGAGCAGAGGAGACAATACATATACCAAATTCAATACAAACAGGCGGAGGATCCA
CGAAATTCACCCCCTAACCTTCCCTGAATTCATATGCCAACTCTCGTCATGTTGCAAGCGCATAGTTAAGGACATTTTCAGCAAGGTTTTCGAGTTTAATTTCAAAGGATCCGCGGGAATTTTCCAGTGTTTCGTGCATAATAGCTAGGGCAGGGTTGGAATTATTTTGTGCTTGCTATCGATGTTGGCGATCGAATTTT
CCACAGATGAAAATGGCTTCCAAGTCTCAGACAGCCAAAGACCTAGTGGAGGAAGCCAAGAAGCGGGCATTATTGCTTTCTATATGCGTCATCGGTCTCGCATATCTAATGTCCTTGACAAGCTCTTCAGTATGGATTAACATGCCTGCAGCAGTTCTCCTGATAGTTCTTGTTCGCTACATTTCATATGATGTTAGTGC
TCGTAGGAGGATTGCAGAGCAAGATACGCCATCTTCAGTGAACAACATTTTACAAAACCAAATGCCCCTTGATCATGCATCATCCCAACCTCACTCTGAACCAAGTGATTGGAGAAGGAAAGTTGATTCCCCAGTTGTTGAGGCAGCAATTGACAAACTAACAAAGCATCTTGTGTCTGAATGGATGACCAATCTGTGGT
ATGAGAAGATAACACCTGACAAAGATGCTCCAGAAGAGCTCACAGAAATCATGAATGGACTTCTTGGAGAAATTTGCTTGCGAGCCAAGGATGTGAATCTTATTGACCTTATCACCAGGGATACTGTCCATTTGGTGAGTGAGCATATAGATCTCTATCGAATAATACAGACCCAGATTGGCGAAGAAAAGTTGAGTAGC
TTGTCAAATGATGAAAGAGATGCGAAATTGAAGTTAACTCTAGCAGCAGATAACAAACTTCATCCAGCATTGTTTTCTGCTGAGGCAGAGCGCAAGGTTTTACAGCGTTTTATGGATGGTCTTATGAGTTTAACATGTAAACCCGACGACCTGCAATGCAAATTTTTCCGATATATTGCGAGAGAGCTTCTTGCCTGTGC
AGTGATGCGTCCAATCATGAACTTAGCGAGTCCCAAGTTCATCAATGAACGAATTGAATCTGCTGTTTTATCTCTCCGAAATAGGAATGGAAAACTAACGAAGGCCTCGGAGCCAGGGACAAAACAGAGTAAATCCTCAAGATCAAGGTTTACACCTGATCATTTCTCTGGTTTTCTAGATCGCTCTATCGCGGGGGTTG
AACTTGTGCAGCTTGGACCTAGCCATGGCAAAAAGTCTGTGGAAATTGATGGGACACAAAATGGAGCTTCCTCTACTTTTCATAATGAACCAAAGTATGCTTACTTTAAGTCATCAGCAGATATCCACCCAAAAAATCATATAGTGCAATATTACCAACAAGAGGGTGAGACATCTGATATTGTGATTGCAGACAATTGG
AAGTCTCAATCTGAAAATGTTGAGGGGATAGAAACACACAATGTTGACAGTAGAATCATCCAGGCACGGCGATCCCCAGGTGGGGAGTGGGGTCAGATGCTTGATATTATCTCAAGGAGAAAGAAACAGGCCCTTGCTCCTGAGCATTTTGAGAATATGTGGGCAAAAGGGCGTAATTACAAAAAGAAAGAAATTGCAAA
TAGCTTATCAAAGCCTGTCAATCCTAGGGTATTGTCTGAGGCTTCTGATAAAACAAATCTCAGCAGGAAGCCATTTTATGGACAGCCAGAAAATTCAGGGATAAGTAAGAGCTCTATTCCAGAAAGTTGTCCCAGTTTTTCTCAACAGATAAAGCAATCTACTGATGACTGCAGTAGAGTAATTGAAGATGCTGGCAGGC
TGGAGGAACCTTCACCTGTTCATGAGCATATAAGACATGAAAAATCTTTTAAACAGCACATGGAAATTGTAGAAGAGAGTGGGAGTTCCTATACGAGTGAAGAGGACGAGAGTAGCAGTGTGACAGGGCTTGGTACCCCTGGTATTAAGGTATGGGATAGTAAAAGTAATAGAGCTGGTTCTGCATCACATCATCCCTTA
GAAAATGATCAAGGTCATCACAAAAAGCAAGGAAACAAAAGTCAGCTCCACTATCGTAGGTTATATAAAACAGCATCAGGTCGGAAAAGGACTAGATCCAAGCGGGGTGTAGATAACTGGCAAGAACTGGAAAGAACATCCTTTTATTTGGGAGATGGTCTGGACATATTGAACACTGCTCAGGCAGAGTCTATGAAAAC
TGAAGATCCAGAGGATGAGAGTGAAAATCAAAGTAGGGTGTCTAGTGGTACCTTGGCTTGTTCATCAGCTGCTGCTGTCTGCAGTTCTGGAACAGCCAATTCATCTGAAATGAAATCTGAGAGCTCTCACTTGGCTGCAGCTTTACCATCTCAGCAACTGCGATGCAAGgcaagtatgaaactgtctttgacttaatatc
ttgtacagggtaatggaaattgggctgcagagcaaaggaagacataattttaagttgtcaatagcactgttgagtacaatagaaatcttgttggaggaagactgcatgtcaatgtctttttgtcaatgggactattgagtatgaaaggatagaagactacttggtggagtgcaccaggcaccttcaacttaagacatgat
gccataaaaaacagaaagaactaagatgcaaatagccataattggattagttgtgtctgtaaacttaatgcctagcaaggcgtattagctgtttaaaaaaattatgaaagcaatttaaatatgaaagatattcacggaaattcttttgcagGTATTGGGAGCAAACTTTGTTAAAAGTGATTCCAAAACCATTGCTGTTT
ATTCTATCTCCGTGACAGATAATGAGAACCGTACATGGTCAATTAAAAGAAGATTTCGACATTTTGAGGAGCTACACCGACGGCTCAAGGTTTTGCCAGAATATTCATTACATCTGCCTCCCAAACGATTTTTATCGTCAAGTCTGGATGCTTCATTTGTATATGAACGCTGTAATTTGCTTGACAAGTATCTGAAGGAT
TTGCTTGTACTTCCAAATGTATCAGAATCTATTGAAGTCTGGGATTTTTTAAGTGTTGATTCACAGACTTATATGTTTTCGAATTCTCTCTCAATAATTGAGACCTTATCTGTTGACCTTGATAACAGACAGTATGGGAAACATGCAAAATTCAATGAAAATAACACAAAGAAAACAAAAGAAGCTTTAGATTGGAATTG
TGATAAATCAGCATTAAGATGCATTGAGTCTGATTCTCATCTAGCAACAAGCCCTTCTGCTGAAGAATCTAGACAGCATGGTAGAGACACTGAACAGGAGCCTTCATTCTCTAAGAGCAAACAACAGGAAGGTATGCACGTTTCTTATTCAGAAAGTGATTCAGACATTGAGCAGCATGGAGGCAAAATACATTTAAAGA
TATCTGAAGGGAGTAGAAATAAGGCAAAGGCAGAGGTGAACATACTGAATGATGCTCCTGATGTACTTGGTATGGAGGATGATTCTATGGTACCATCTGAG
Intron 5 GTAGGTCCCA ... TCTCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 5.88 | 64 | 4 | 0 |
| A2 | 0 | 41 | 0 | 0 |
| A3 | 3.33 | 58 | 2 | 0 |
| A4 | 12.77 | 41 | 6 | 1 |
| A5 | 0 | 23 | 0 | 0 |
| A6 | 0 | 215 | 0 | 0 |
| A7 | 0.39 | 253 | 1 | 0 |
| A8 | 0.34 | 296 | 1 | 0 |
| A9 | 1.41 | 210 | 3 | 2 |
| A10 | 0 | 142 | 0 | 0 |
>TRINITY_DN108583_c0_g1_i1 from sample A4 / Example spliced isoformGGGCACCTCAATTCCCTTTTTACTATTTATCTAAACCGATCACAAAGTACCTACCCATCTCGTAGAAATTCAAACCCATATTTTGTTCTAACTACTCAACGTTTAACGTGCGGTGAAATGAACAAAAATGCTTTACTGAATGTCAGAGCAGAGCAGAGGAGACAATACATATACCAAATTCAATACAAACAGGCGGAGGA
TCCACGAAATTCACCCCCTAACCTTCCCTGAATTCATATGCCAACTCTCGTCATGTTGCAAGCGCATAGTTAAGGACATTTTCAGCAAGGTTTTCGAGTTTAATTTCAAAGGATCCGCGGGAATTTTCCAGTGTTTCGTGCATAATAGCTAGGGCAGGGTTGGAATTATTTTGTGCTTGCTATCGATGTTGGCGATCGAA
TTTTCCACAGATGAAAATGGCTTCCAAGTCTCAGACAGCCAAAGACCTAGTGGAGGAAGCCAAGAAGCGGGCATTACTGCTTTCTATATGCGTCATCGGTCTCGCATATCTAATGTCCTTGACAAGCTCTTCAGTATGGATTAACATGCCTGCAGCAGTTCTCCTGATAGTTCTTGTTCGCTACATTTCATATGATGTTA
GTGCTCGTAGGAGGATTGCAGAGCAAGATACGCCATCTTCAGTGAACAACATTTTACAAAACCAAATGCCCCTTGATCATGCATCATCCCAACCTCACTCTGAACCAAGTGATTGGAGAAGGAAAGTTGATTCCCCAGTTGTTGAGGCAGCAATTGACAAACTAACAAAGCATCTTGTGTCTGAATGGATGACCAATCTG
TGGTATGAGAAGATAACACCTGACAAAGATGCTCCAGAAGAGCTCACAGAAATCATGAATGGACTTCTTGGAGAAATTTGCTTGCGAGCCAAGGATGTGAATCTTATTGACCTTATCACCAGGGATACTGTCCATTTGGTGAGTGAGCATATAGATCTCTATCGAATAATACAGACCCAGATTGGCGAAGAAAAGTTGAG
TAGCTTGTCAAATGATGAAAGAGATGCGAAATTGAAGTTAACTCTAGCAGCAGATAACAAACTTCATCCAGCATTGTTTTCTGCCGAGGCAGAGCGCAAGGTTTTACAGCGTTTTATGGATGGTCTTATGAGTTTAACATGTAAACCCGACGACCTGCAATGCAAATTTTTCCGATATATTGCGAGAGAGCTTCTTGCCT
GTGCAGTGATGCGTCCAATCATGAACTTAGCGAGTCCCAAGTTCATCAATGAACGAATTGAATCTGCTGTTTTATCTCTCCGAAATAGGAATGGAAAACTAACTAAGACCTCGGAGCCAGGGACAAAACAGAGTAAATCCTCAAGATCAAGGTTTACACCTGATCATTTCTCTGGTTTTCTAGATCGCTCTATCGCGGGG
GTTGAACTTGTGCAGCTTGGACCTAGCCATGGCAAAAAGTCTGTGGAAATTGATGGGACACAAAATGGAGCTTCCTCTACTTTTCATAATGAACCAAAGTATGCTTACTTTAAGTCATCAGCAGATATCCACCCAAAAAATCATATAATGCAATATTACCAACAAGAGGGTGAGACATCTGATATTGTGATTGCAGACAA
TTGGAAGTCTCAATCTGAAAATGTTGAGGGGATAGAAACACACAATGTTGACAGTAGAATCATCCAGGCACGGCGATCCCCAGGTGGGGAGTGGGGTCAGATGCTTGATATTATCTCAAGGAGAAAGAAACAGGCCCTTGCTCCTGAGCATTTTGAGAATATGTGGGCAAAAGGGCGTAATTACAAAAAGAAAGAAATTG
CAAATAGCTTATCAAAGCCTGTCAATCCTAGGGTATTGTCTGAGGCTTCTGATAAAACAAATCTCAGCAGGAAGCCATTTTATGGACAGCCAGAAAATTCAGGGATAAGTAAGAGCTCTATTCCAGAAAGTTGTCCCAGTTTTTCTCAACAGATAAAGCAATCTACTGATGACTGCAGTAGAGTAATTGAAGATGCTGGC
AGGCTGGAGGAACCTTCACCTGTTCATGAGCATATAAGACATGAAAAATCTTTTAAACAGCACATGGAAATTGTAGAAGAGAGTGGGAGTTCCTATACGAGTGAAGAGGACGAGAGTAGCAGTGTGACAGGGCTTGGTACCCCTGGTATTAAGGTATGGGATAGTAAAAGTAATAGAGCTGGTTCTGCATCACATCATCC
CTTAGAAAATGATCAAGGTCATCACAAAAAGCAAGGAAACAAAAGTCAGCTCCACTATCGTAGGTTATATAAAACAGCATCAGGTCGGAAAAGGACTAGATCCAAGCGGGGTGTAGATAACTGGCAAGAACTGGAAAGAACATCCTTTTATTTGGGAGATGGTCTGGACATATTGAACACTGCTCAGGCAGAGTCTATGA
AAACTGAAGATCCAGAGGATGAGAGTGAAAATCAAAGTAGGGTGTCTAGTGGTACCTTGGCTTGTTCATCAGCTGCTGCTGTCTGCAGTTCTGGAACAGCCAATTCATCTGAAATAAAATCTGAGAGCTCTCACTTGGCTGCAGCTTTACCATCTCAGCAACTGCGATGCAAGGTATTGGGAGCAAACTTTGTTAAAAGT
GATTCCAAAACCATTGCTGTTTATTCTATCTCCGTGACAGATAATGAGAACCGTACATGGTCAATTAAAAGAAGATTTCGACATTTTGAGGAGCTACACCGACGGCTCAAGGTTTTGCCAGAATATTCATTACATCTGCCTCCCAAACGATTTTTATCGTCAAGTCTGGATGCTTCATTTGTATATGAACGCTGTAATTT
GCTTGACAAGTATCTGAAGGATTTGCTTGTACTTCCAAATGTATCAGAATCTATTGAAGTCTGGGATTTTTTAAGTGTTGATTCACAGACTTATATGTTTTCGAATTCTCTCTCAATAATTGAGACCTTATCTGTTGACCTTGATAACAGACAGTATGGGAAACATGCAAAATTCAATGAAAATAACACAAAGAAAACAA
AAGAAGCTTTAGATTGGAATTGTGATAAATCAGCATTAAGATGCATTGAGTCTGATTCTCATCTAGCAACAAGCCCTTCTGCTGAAGAATCTAGACAGCATGGTAGAGACACTGAACAGGAGCCTTCATTCTCTAAGAGCAAACAACAGGAAGGTATGCACGTTTCTTATTCAGAAAGTGATTCAGACATTGAGCAGCAT
GGAGGCAAAATACATTTAAAGATATCTGAAGGGAGTAGAAATAAGGCAAAGGCAGAGGTGAACATACTGAATGATGCTCCTGATGTACTTGGTATGGAGGACGATTCTATGGTACCATCTGAGTGGATACCACCAAATTTGAGTGTACCAATATTGAATTTGGTAGATGTCATTTTCCAACTACAGGATGGTGGTTGGAT
CAGGCGCCAAGCATTTTGGGTGGCAAAACAAGTACTACAGCTTGGCATGGGTGATGCGTTTGATGACTGGCTGATTGAGAAAGTTCAGCTTTTGCGAAAAGGAGAAGTCATCGCTTCAGCAATTAGTAAGATTGAACAGATTCTTTGGCCTGATGGTATATTCCTAACTAAACATCCTCGGCGCCAACACCCTCCAGCTT
CCTCAAAAGGTGATTCATCCATACCACATATCCCACCATCTTCCTCAAAAGGTGATCCATCTGCTCCACATATCACACCAACTTCCTCAAAAGGTGATCCGTTTGCTTCACATATTAGAGGAACAGCAACATCACCTAAGGAAGCGGAACATGGACAACATGAGGAGAAAGATAACCAAAGTTTGTTGGATCAACAGATG
GAAGAATCCCGTCGTGCAAAATTTGTCCGAGAGTTAATGATTGATAATGCCCCAGCTGCTCTTGTTGGTCTCGTAGGACGCAAGGAGTACGAGCGATGTGCCCGGGATATTTATTTCTTTCTTCAATCAGCAGTCTGTTTGAAGCAATTAGCTTACGGTCTTGTGGAGATGCTTCTCCTAGCAGCATTTCCTGAGCTCCA
TAATATTGTGAGTTCTTGCCATACAGAAAAGGGAAATTTTGAGGTAATTTAACTTTCAAGAGATGAAATGATTCCATTTATTCGTTCCAATTGTTCTGGCTTTCAGTAGTGATTCATTGTGGCCATGGTTGATGTTGATTGGATGAGTTATGTTAAAATGGAATTGGTCCATTTGTTGAGTCCACAAATATGCTTATGGA
TGACGTGTCCTTAGTATTCAAAGTTTGTGGGCATTTTTCCCCTTGTCAATATTGTATTTTGAGAACATAACCAAGAGCAATGGCAAATCTAGTGCCTGAAAGTATTCATGGTTCGGTTGAATTAAGTTGTTATTGTTTTGCTCAGCTTTGCTCAATATCAAGCATTGAGTAAGTCCTTTAATAATATGGTTTCAATTTTT
GTAGTAGCTTATAATATAAATAAACAAAAGAATCCATGAATGGGCTCATACCCAAGTTATTACCTGGATGCGTCCTTAAGTGCTAAGTGTTTCCTGGGATTTTGCTGCTTGTCAATATTGTATTTTGAGAACATAACCAAGAGCAATGGCAAATCTAGTGCCTGAAAGTATTC
>TRINITY_DN108583_c0_g1_i14 from sample A4 / Example unspliced isoform:TGCTTGTGAAAACCCAGTGGGGTAGGTGCAAGTCCTGGGTGACTTTGGTGGAATAGATACCCCCCATTTGTGGCCTCTTAGTTTACCCCCCATTTGTGGCTTCTTTTGTAGGGAAAGACTTTTCTGCCCATTGAATATCCTATGTAGAACAGTTGCCGCTTGCTTCTGTTGATTGGAAGCATTCAGTAAAACAAAACAAA
ATAAAATAAATTGGGTACTGTCTCATGTAGTAACACTCAGATTTGTTCTTTTTGCAAATGTTATGACTTGAACTCTTAGAGTTACCTAATTTTACATTGTAGTGCAGGCTGATATCCTTTCCACCAAACAGCTAATTCTAAAATGTCTTCTTGCTGCATCATGTTTCCAAAGTCAATTTGTCCCATATATCATGTGTATG
GCTTAAAGAAAGCATGGAACTGAGGCTCTCTCTAGTCTAGTTTCCAAGGAAGCTACACTGCAAAAAGATCATGGACCTCTATATGCATCATAGCCTATATTTTGACTTGCCAACCTGTTTCTTTTTTGTTTCTTTGGCATTTTAATCTTTATTGTGTGCCGTAATTTAGAATATTTTTGGAGGTCACTAGTATGTCTGTA
TATGCAGAGTGTAAATGGGAGTGTTGTATTCATATCCTGCAGATAATGCCCCAGCTGCTCTTGTTGGTCTCGTAGGACGCAAGGAGTACGAGCGATGTGCCCGGGATATTTATTTCTTTCTTCAAgtaggtcccaaatattgttttgattttcttagaaactaatggtcatcaaaagattactttgatgtatatatttca
ttttttttctttttctttcttttctgatttaacaagtgatgacatttgtttgcactgagaggcagattgatctaaaagaaggcattgcatttctttatttatctcttgcagTCAGCAGTCTGTTTGAAGCAATT
Intron 6 GTAAGTGAAT ... CTATTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.41 | 50 | 10.4 | 13.4 |
| A2 | 11.53 | 29 | 5.9 | 3.8 |
| A3 | 18.82 | 30 | 8.1 | 7.8 |
| A4 | 8.1 | 33 | 4.6 | 3.1 |
| A5 | 15.38 | 11 | 2.6 | 2 |
| A6 | 12.31 | 20 | 2.3 | 3.1 |
| A7 | 10.74 | 52 | 4.6 | 6.8 |
| A8 | 11.08 | 41 | 2.5 | 5.5 |
| A9 | 11.96 | 58 | 3.8 | 8.6 |
| A10 | 10.94 | 37 | 1.5 | 4.9 |
>TRINITY_DN130187_c0_g1_i18 from sample A1 / Example spliced isoformAAAGTACCTACCCATCTCGTAGAAATTCAAACCCATATTTTGTTCTAACTACTCAACGTTTAACGTGCGGTGAAATGAACAAAAATGCTTTACTGAATGTCAGAGCAGAGCAGAGGAGACAATACATATACCAAATTCAATACAAACAGGCGGAGGATCCACGAAATTCACCCCCTAACCTTCCCTGAATTCATATGCCA
ACTCTCGTCATGTTGCAAGCGCATAGTTAAGGACATTTTCAGCAAGGTTTTCGAGTTTAATTTCAAAGGATCCGCGGGAATTTTCCAGTGTTTCGTGCATAATAGCTAGGGCAGGGTTGGAATTATTTTGTGCTTGCTATCGATGTTGGCGATCGAATTTTCCACAGATGAAAATGGCTTCCAAGTCTCAGACAGCCAAA
GACCTAGTGGAGGAAGCCAAGAAGCGGGCATTATTGCTTTCTATATGCGTCATCGGTCTCGCATATCTAATGTCCTTGACAAGCTCTTCAGTATGGATTAACATGCCTGCAGCAGTTCTCCTGATAGTTCTTGTTCGCTACATTTCATATGATGTTAGTGCTCGTAGGAGGATTGCAGAGCAAGATACGCCATCTTCAGT
GAACAACATTTTACAAAACCAAATGCCCCTTGATCATGCATCATCCCAACCTCACTCTGAACCAAGTGATTGGAGAAGGAAAGTTGATTCCCCAGTTGTTGAGGCAGCAATTGACAAACTAACAAAGCATCTTGTGTCTGAATGGATGACCAATCTGTGGTATGAGAAGATAACACCTGACAAAGATGCTCCAGAAGAGC
TCACAGAAATCATGAATGGACTTCTTGGAGAAATTTGCTTGCGAGCCAAGGATGTGAATCTTATTGACCTTATCACCAGGGATACTGTCCATTTGGTGAGTGCGCATATAGATCTCTATCGAATAATACAGACCCAGATTGGCGAAGAAAAGTTGAGTAGCTTGTCAAATGATGAAAGAGATGCGAAATTGAAGTTAACT
CTAGCAGCAGATAACAAACTTCATCCAGCATTGTTTTCTGCCGAGGCAGAGCGCAAGGTTTTACAGCGTTTTATGGATGGTCTTATGAGTTTAACATGTAAACCCGACGACCTGCAATGCAAATTTTTCCGATATATTGCGAGAGAGCTTCTTGCCTGTGCAGTGATGCGTCCAATCATGAACTTAGCGAGTCCCAAGTT
CATCAATGAACGAATTGAATCTGCTGTTTTATCTCTCCGAAATAGGAATGGAAAACTAACTAAGACCTCGGAGCCAGGGACAAAACAGAGTAAATCCTCAAGATCAAGGTTTACACCTGATCATTTCTCTGGTTTTCTAGATCGCTCTATCGCGGGGGTTGAACTTGTGCAGCTTGGACCTAGCCATGGCAAAAAGTCTG
TGGAAATTGATGGGACACAAAATGGAGCTTCCTCTACTTTTCATAATGAACCAAAGTATGCTTACTTTAAGTCATCAGCAGATATCCACCCAAAAAATCATATAGTGCAATATTACCAACAAGAGGGTGAGACATCTGATATTGTGATTGCAGACAATTGGAAGTCTCAATCTGAAAATGTTGAGGGGATAGAAACACAC
AATGTTGACAGTAGAATCATCCAGGCACGGCGATCCCCAGGTGGGGAGTGGGGTCAGATGCTTGATATTATCTCAAGGAGAAAGAAACAGGCCCTTGCTCCTGAGCATTTTGAGAATATGTGGGCAAAAGGGCGTAATTACAAAAAGAAAGAAATTGCAAATAGCTTATCAAAGCCTGTCAATCCTAGGGTATTGTCTGA
GGCTTCTGATAAAACAAATCTCAGCAGGAAGCCATTTTATGGACAGCCAGAAAATTCAGGGATAAGTAAGAGCTCTATTCCAGAAAGTTGTCCCAGTTTTTCTCAACAGATAAAGCAATCTACTGATGACTGCAGTAGAGTAATTGAAGATGCTGGCAGGCTGGAGGAACCTTCACCTGTTCATGAGCATATAAGACATG
AAAAATCTTTTAAACAGCACATGGAAATTGTAGAAGAGAGTGGGAGTTCCTATACGAGTGAAGAGGACGAGAGTAGCAGTGTGACAGGGCTTGGTACCCCTGGTATTAAGGTATGGGATAGTAAAAGTAATAGAGCTGGTTCTGCATCACATCATCCCTTAGAAAATGATCAAGGTCATCACAAAAAGCAAGGAAACAAA
AGTCAGCTCCACTATCGTAGGTTATATAAAACAGCATCAGGTCGGAAAAGGACTAGATCCAAGCGGGGTGTAGATAACTGGCAAGAACTGGAAAGAACATCCTTTTATTTGGGAGATGGTCTGGACATATTGAACACTGCTCAGGCAGAGTCTATGAAAACTGAAGATCCAGAGGATGAGAGTGAAAATCAAAGTAGGGT
GTCTAGTGGTACCTTGGCTTGTTCATCAGCTGCTGCTGTCTGCAGTTCTGGAACAGCCAATTCATCTGAAATGAAATCTGAGAGCTCTCACTTGGCTGCAGCTTTACCATCTCAGCAACTGCGATGCAAGGTATTGGGAGCAAACTTTGTTAAAAGTGATTCCAAAACCATTGCTGTTTATTCTATCTCCGTGACAGATA
ATGAGAACCGTACATGGTCAATTAAAAGAAGATTTCGACATTTTGAGGAGCTACACCGACGGCTCAAGGTTTTGCCAGAATATTCATTACATCTGCCTCCCAAACGATTTTTATCGTCAAGTCTGGATGCTTCATTTGTATATGAACGCTGTAATTTGCTTGACAAGTATCTGAAGGATTTGCTTGTACTTCCAAATGTA
TCAGAATCTATTGAAGTCTGGGATTTTTTAAGTGTTGATTCACAGACTTATATGTTTTCGAATTCTCTCTCAATAATTGAGACCTTATCTGTTGACCTTGATAACAGACAGTATGGGAAACATGCAAAATTCAATGAAAATAACACAAAGAAAACAAAAGAAGCTTTAGATTGGAATTGTGATAAATCAGCATTAAGATG
CATTGAGTCTGATTCTCATCTAGCAACAAGCCCTTCTGCTGAAGAATCTAGACAGCATGGTAGAGACACTGAACAGGAGCCTTCATTCTCTAAGAGCAAACAACAGGAAGGTATGCACGTTTCTTATTCAGAAAGTGATTCAGACATTGAGCAGCATGGAGGCAAAATACATTTAAAGATATCTGAAGGGAGTAGAAATA
AGGCAAAGGCAGAGGTGAACATACTGAATGATGCTCCTGATGTACTTGGTATGGAGGATGATTCTATGGTACCATCTGAGTGGATACCACCAAATTTGAGTGTACCAATATTGAATTTGGTAGATGTCATTTTCCAACTACAGGATGGTGGTTGGATCAGGCGCCAAGCATTTTGGGTGGCAAAACAAGTACTACAGCTT
GGCATGGGTGATGCGTTTGATGACTGGCTGATTGAGAAAGTTCAGCTTTTGCGAAAAGGAGAAGTCATCGCTTCAGCAATTAGTAAGATTGAACAGATTCTTTGGCCTGATGGTATATTCCTAACTAAACATCCTCGGCGCCAACACCCTCCAGCTTCCTCAAAAGGTGATTCATCCATACCACATATCCCACCATCTTC
CTCAAAAGGTGATCCATCTGCTCCACATATCACACCAACTTCCTCAAAAGGTGATCCGTTTGCTTCACATATTAGAGGAACAGCAACATCACCTAAGGAAGCGGAACATGGACAACATGAGGAGAAAGATAACCAAAGTTTGTTGGATCAACAGATGGAAGAATCCCGTCGTGCAAAATTTGTCCGAGAGTTAATGATTG
ATAATGCCCCAGCTGCTCTTGTTGGTCTCGTAGGACGCAAGGAGTACGAGCGATGTGCCCGGGATATTTATTTCTTTCTTCAATCAGCAGTCTGTTTGAAGCAATTAGCTTACGGTCTTGTGGAGATGCTTCTCCTAGCAGCATTTCCTGAGCTCCATAATATTGTGAGTTCTTGCCATACAGAAAAGGGAAATTTTGAG
GTAATTTAACTTTCAAGAGATGAAATGATTCCATTTATTCGTTCCAATTGTTCTGGCTTTCAGTAGTGATTCATTGTGGCCATGGTTGATGTTGATTGGATGAGTTATGTTAAAATCGAATTGGTCCATTTGTTGAGTCCACAAATATGCTTATGGATGACGTGTCCTTAGTATTCAAAGTTTGTGGGCATTTTTCCCCT
TGTCAATATTGTATTTTGAGAACATAACCAAGAGCAATGGCAAATCTAGTGCCTGAAAGTATTCGTGGTTCGGTTGAATTAAGTTGTTATTGTTTTGCTCAGCTTTGCTCAATATCAAGCATTGAGTAAGTCCTTTAATAATATGGTTTCAATTTTTGTAGTAGCTTATAATATAAATAAACAAAAGAATCCATGAATGG
GCTCATACCCAAGTTATTACCTGGATGCGTCCTTAAGTGCTAAGTGTTTCCTGGGATTTTGCTGCTTGTCAATATTGTATTTTGAGAACATATCTGAGAGCAAAGTCAAATCTAGTGCTTGCAAGTATTCGTGGTTCTGTTGAATCAAGTTATTGTTTTTCAGCTTTTCTCAATATCAGG
>TRINITY_DN130187_c0_g1_i6 from sample A1 / Example unspliced isoform:TTTTCTACTAAATTCATTTTAATTGGTATTTTCTGTATTATTCTCAATTTTGTGCAACTTTATGATGAAAGGAGGTTCCAACTCTGTCATTCACATCTTGACAGACTTATATGTTTTCGAATTCTCTCTCAATAATTGAGACCTTATCTGgtaagtgaattggtggttttgtcagatgtcattttgtgtttgtgcatatt
ttctttgttaaatataactggttgtctttctcttctttattgtttctctttgcatggaaactattggcagTTGACCTTGATAACAGACAGTATGGGAAACATGCAAAATTCAATGAAAATAACACAAAGAAAACAAAAGAAGCTTTAGATTGGAATTGTGATAAATCAGCATTAAGATGCATTGAGTCTGATTCTCATCT
AGCAACAAGCCCTTCTGCTGAAGAATCTAGACAGCATGGTAGAGACACTGAACAGGAGCCTTCATTCTCTAAGAGCAAACAACAGGAAGGTATGCACGTTTCTTATTCAGAAAGTGATTCAGACATTGAGCAGCATGGAGGCAAAATACATTTAAAGATATCTGAAGGGAGTAGAAATAAGGCAAAGGCAGAGGTGAACA
TACTGAATGATGCTCCTGATGTACTTGGTATGGAGGATGATTCTATGGTACCATCTGAG
Intron 7 GTGTTGTATT ... ATGGGTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.72 | 48 | 22 | 13 |
| A2 | 25 | 45 | 19 | 11 |
| A3 | 30.95 | 58 | 28 | 24 |
| A4 | 23.6 | 34 | 15 | 6 |
| A5 | 23.64 | 21 | 12 | 1 |
| A6 | 22.81 | 22 | 12 | 1 |
| A7 | 19.48 | 62 | 20 | 10 |
| A8 | 20 | 34 | 9 | 8 |
| A9 | 12.35 | 71 | 11 | 9 |
| A10 | 19.72 | 57 | 20 | 8 |
>TRINITY_DN130187_c0_g1_i18 from sample A1 / Example spliced isoformAAAGTACCTACCCATCTCGTAGAAATTCAAACCCATATTTTGTTCTAACTACTCAACGTTTAACGTGCGGTGAAATGAACAAAAATGCTTTACTGAATGTCAGAGCAGAGCAGAGGAGACAATACATATACCAAATTCAATACAAACAGGCGGAGGATCCACGAAATTCACCCCCTAACCTTCCCTGAATTCATATGCCA
ACTCTCGTCATGTTGCAAGCGCATAGTTAAGGACATTTTCAGCAAGGTTTTCGAGTTTAATTTCAAAGGATCCGCGGGAATTTTCCAGTGTTTCGTGCATAATAGCTAGGGCAGGGTTGGAATTATTTTGTGCTTGCTATCGATGTTGGCGATCGAATTTTCCACAGATGAAAATGGCTTCCAAGTCTCAGACAGCCAAA
GACCTAGTGGAGGAAGCCAAGAAGCGGGCATTATTGCTTTCTATATGCGTCATCGGTCTCGCATATCTAATGTCCTTGACAAGCTCTTCAGTATGGATTAACATGCCTGCAGCAGTTCTCCTGATAGTTCTTGTTCGCTACATTTCATATGATGTTAGTGCTCGTAGGAGGATTGCAGAGCAAGATACGCCATCTTCAGT
GAACAACATTTTACAAAACCAAATGCCCCTTGATCATGCATCATCCCAACCTCACTCTGAACCAAGTGATTGGAGAAGGAAAGTTGATTCCCCAGTTGTTGAGGCAGCAATTGACAAACTAACAAAGCATCTTGTGTCTGAATGGATGACCAATCTGTGGTATGAGAAGATAACACCTGACAAAGATGCTCCAGAAGAGC
TCACAGAAATCATGAATGGACTTCTTGGAGAAATTTGCTTGCGAGCCAAGGATGTGAATCTTATTGACCTTATCACCAGGGATACTGTCCATTTGGTGAGTGCGCATATAGATCTCTATCGAATAATACAGACCCAGATTGGCGAAGAAAAGTTGAGTAGCTTGTCAAATGATGAAAGAGATGCGAAATTGAAGTTAACT
CTAGCAGCAGATAACAAACTTCATCCAGCATTGTTTTCTGCCGAGGCAGAGCGCAAGGTTTTACAGCGTTTTATGGATGGTCTTATGAGTTTAACATGTAAACCCGACGACCTGCAATGCAAATTTTTCCGATATATTGCGAGAGAGCTTCTTGCCTGTGCAGTGATGCGTCCAATCATGAACTTAGCGAGTCCCAAGTT
CATCAATGAACGAATTGAATCTGCTGTTTTATCTCTCCGAAATAGGAATGGAAAACTAACTAAGACCTCGGAGCCAGGGACAAAACAGAGTAAATCCTCAAGATCAAGGTTTACACCTGATCATTTCTCTGGTTTTCTAGATCGCTCTATCGCGGGGGTTGAACTTGTGCAGCTTGGACCTAGCCATGGCAAAAAGTCTG
TGGAAATTGATGGGACACAAAATGGAGCTTCCTCTACTTTTCATAATGAACCAAAGTATGCTTACTTTAAGTCATCAGCAGATATCCACCCAAAAAATCATATAGTGCAATATTACCAACAAGAGGGTGAGACATCTGATATTGTGATTGCAGACAATTGGAAGTCTCAATCTGAAAATGTTGAGGGGATAGAAACACAC
AATGTTGACAGTAGAATCATCCAGGCACGGCGATCCCCAGGTGGGGAGTGGGGTCAGATGCTTGATATTATCTCAAGGAGAAAGAAACAGGCCCTTGCTCCTGAGCATTTTGAGAATATGTGGGCAAAAGGGCGTAATTACAAAAAGAAAGAAATTGCAAATAGCTTATCAAAGCCTGTCAATCCTAGGGTATTGTCTGA
GGCTTCTGATAAAACAAATCTCAGCAGGAAGCCATTTTATGGACAGCCAGAAAATTCAGGGATAAGTAAGAGCTCTATTCCAGAAAGTTGTCCCAGTTTTTCTCAACAGATAAAGCAATCTACTGATGACTGCAGTAGAGTAATTGAAGATGCTGGCAGGCTGGAGGAACCTTCACCTGTTCATGAGCATATAAGACATG
AAAAATCTTTTAAACAGCACATGGAAATTGTAGAAGAGAGTGGGAGTTCCTATACGAGTGAAGAGGACGAGAGTAGCAGTGTGACAGGGCTTGGTACCCCTGGTATTAAGGTATGGGATAGTAAAAGTAATAGAGCTGGTTCTGCATCACATCATCCCTTAGAAAATGATCAAGGTCATCACAAAAAGCAAGGAAACAAA
AGTCAGCTCCACTATCGTAGGTTATATAAAACAGCATCAGGTCGGAAAAGGACTAGATCCAAGCGGGGTGTAGATAACTGGCAAGAACTGGAAAGAACATCCTTTTATTTGGGAGATGGTCTGGACATATTGAACACTGCTCAGGCAGAGTCTATGAAAACTGAAGATCCAGAGGATGAGAGTGAAAATCAAAGTAGGGT
GTCTAGTGGTACCTTGGCTTGTTCATCAGCTGCTGCTGTCTGCAGTTCTGGAACAGCCAATTCATCTGAAATGAAATCTGAGAGCTCTCACTTGGCTGCAGCTTTACCATCTCAGCAACTGCGATGCAAGGTATTGGGAGCAAACTTTGTTAAAAGTGATTCCAAAACCATTGCTGTTTATTCTATCTCCGTGACAGATA
ATGAGAACCGTACATGGTCAATTAAAAGAAGATTTCGACATTTTGAGGAGCTACACCGACGGCTCAAGGTTTTGCCAGAATATTCATTACATCTGCCTCCCAAACGATTTTTATCGTCAAGTCTGGATGCTTCATTTGTATATGAACGCTGTAATTTGCTTGACAAGTATCTGAAGGATTTGCTTGTACTTCCAAATGTA
TCAGAATCTATTGAAGTCTGGGATTTTTTAAGTGTTGATTCACAGACTTATATGTTTTCGAATTCTCTCTCAATAATTGAGACCTTATCTGTTGACCTTGATAACAGACAGTATGGGAAACATGCAAAATTCAATGAAAATAACACAAAGAAAACAAAAGAAGCTTTAGATTGGAATTGTGATAAATCAGCATTAAGATG
CATTGAGTCTGATTCTCATCTAGCAACAAGCCCTTCTGCTGAAGAATCTAGACAGCATGGTAGAGACACTGAACAGGAGCCTTCATTCTCTAAGAGCAAACAACAGGAAGGTATGCACGTTTCTTATTCAGAAAGTGATTCAGACATTGAGCAGCATGGAGGCAAAATACATTTAAAGATATCTGAAGGGAGTAGAAATA
AGGCAAAGGCAGAGGTGAACATACTGAATGATGCTCCTGATGTACTTGGTATGGAGGATGATTCTATGGTACCATCTGAGTGGATACCACCAAATTTGAGTGTACCAATATTGAATTTGGTAGATGTCATTTTCCAACTACAGGATGGTGGTTGGATCAGGCGCCAAGCATTTTGGGTGGCAAAACAAGTACTACAGCTT
GGCATGGGTGATGCGTTTGATGACTGGCTGATTGAGAAAGTTCAGCTTTTGCGAAAAGGAGAAGTCATCGCTTCAGCAATTAGTAAGATTGAACAGATTCTTTGGCCTGATGGTATATTCCTAACTAAACATCCTCGGCGCCAACACCCTCCAGCTTCCTCAAAAGGTGATTCATCCATACCACATATCCCACCATCTTC
CTCAAAAGGTGATCCATCTGCTCCACATATCACACCAACTTCCTCAAAAGGTGATCCGTTTGCTTCACATATTAGAGGAACAGCAACATCACCTAAGGAAGCGGAACATGGACAACATGAGGAGAAAGATAACCAAAGTTTGTTGGATCAACAGATGGAAGAATCCCGTCGTGCAAAATTTGTCCGAGAGTTAATGATTG
ATAATGCCCCAGCTGCTCTTGTTGGTCTCGTAGGACGCAAGGAGTACGAGCGATGTGCCCGGGATATTTATTTCTTTCTTCAATCAGCAGTCTGTTTGAAGCAATTAGCTTACGGTCTTGTGGAGATGCTTCTCCTAGCAGCATTTCCTGAGCTCCATAATATTGTGAGTTCTTGCCATACAGAAAAGGGAAATTTTGAG
GTAATTTAACTTTCAAGAGATGAAATGATTCCATTTATTCGTTCCAATTGTTCTGGCTTTCAGTAGTGATTCATTGTGGCCATGGTTGATGTTGATTGGATGAGTTATGTTAAAATCGAATTGGTCCATTTGTTGAGTCCACAAATATGCTTATGGATGACGTGTCCTTAGTATTCAAAGTTTGTGGGCATTTTTCCCCT
TGTCAATATTGTATTTTGAGAACATAACCAAGAGCAATGGCAAATCTAGTGCCTGAAAGTATTCGTGGTTCGGTTGAATTAAGTTGTTATTGTTTTGCTCAGCTTTGCTCAATATCAAGCATTGAGTAAGTCCTTTAATAATATGGTTTCAATTTTTGTAGTAGCTTATAATATAAATAAACAAAAGAATCCATGAATGG
GCTCATACCCAAGTTATTACCTGGATGCGTCCTTAAGTGCTAAGTGTTTCCTGGGATTTTGCTGCTTGTCAATATTGTATTTTGAGAACATATCTGAGAGCAAAGTCAAATCTAGTGCTTGCAAGTATTCGTGGTTCTGTTGAATCAAGTTATTGTTTTTCAGCTTTTCTCAATATCAGG
>TRINITY_DN130187_c0_g1_i16 from sample A1 / Example unspliced isoform:AAAGTACCTACCCATCTCGTAGAAATTCAAACCCATATTTTGTTCTAACTACTCAACGTTTAACGTGCGGTGAAATGAACAAAAATGCTTTACTGAATGTCAGAGCAGAGCAGAGGAGACAATACATATACCAAATTCAATACAAACAGGCGGAGGATCCACGAAATTCACCCCCTAACCTTCCCTGAATTCATATGCCA
ACTCTCGTCATGTTGCAAGCGCATAGTTAAGGACATTTTCAGCAAGGTTTTCGAGTTTAATTTCAAAGGATCCGCGGGAATTTTCCAGTGTTTCGTGCATAATAGCTAGGGCAGGGTTGGAATTATTTTGTGCTTGCTATCGATGTTGGCGATCGAATTTTCCACAGATGAAAATGGCTTCCAAGTCTCAGACAGCCAAA
GACCTAGTGGAGGAAGCCAAGAAGCGGGCATTATTGCTTTCTATATGCGTCATCGGTCTCGCATATCTAATGTCCTTGACAAGCTCTTCAGTATGGATTAACATGCCTGCAGCAGTTCTCCTGATAGTTCTTGTTCGCTACATTTCATATGATGTTAGTGCTCGTAGGAGGATTGCAGAGCAAGATACGCCATCTTCAGT
GAACAACATTTTACAAAACCAAATGCCCCTTGATCATGCATCATCCCAACCTCACTCTGAACCAAGTGATTGGAGAAGGAAAGTTGATTCCCCAGTTGTTGAGGCAGCAATTGACAAACTAACAAAGCATCTTGTGTCTGAATGGATGACCAATCTGTGGTATGAGAAGATAACACCTGACAAAGATGCTCCAGAAGAGC
TCACAGAAATCATGAATGGACTTCTTGGAGAAATTTGCTTGCGAGCCAAGGATGTGAATCTTATTGACCTTATCACCAGGGATACTGTCCATTTGGTGAGTGCGCATATAGATCTCTATCGAATAATACAGACCCAGATTGGCGAAGAAAAGTTGAGTAGCTTGTCAAATGATGAAAGAGATGCGAAATTGAAGTTAACT
CTAGCAGCAGATAACAAACTTCATCCAGCATTGTTTTCTGCCGAGGCAGAGCGCAAGGTTTTACAGCGTTTTATGGATGGTCTTATGAGTTTAACATGTAAACCCGACGACCTGCAATGCAAATTTTTCCGATATATTGCGAGAGAGCTTCTTGCCTGTGCAGTGATGCGTCCAATCATGAACTTAGCGAGTCCCAAGTT
CATCAATGAACGAATTGAATCTGCTGTTTTATCTCTCCGAAATAGGAATGGAAAACTAACTAAGACCTCGGAGCCAGGGACAAAACAGAGTAAATCCTCAAGATCAAGGTTTACACCTGATCATTTCTCTGGTTTTCTAGATCGCTCTATCGCGGGGGTTGAACTTGTGCAGCTTGGACCTAGCCATGGCAAAAAGTCTG
TGGAAATTGATGGGACACAAAATGGAGCTTCCTCTACTTTTCATAATGAACCAAAGTATGCTTACTTTAAGTCATCAGCAGATATCCACCCAAAAAATCATATAGTGCAATATTACCAACAAGAGGGTGAGACATCTGATATTGTGATTGCAGACAATTGGAAGTCTCAATCTGAAAATGTTGAGGGGATAGAAACACAC
AATGTTGACAGTAGAATCATCCAGGCACGGCGATCCCCAGGTGGGGAGTGGGGTCAGATGCTTGATATTATCTCAAGGAGAAAGAAACAGGCCCTTGCTCCTGAGCATTTTGAGAATATGTGGGCAAAAGGGCGTAATTACAAAAAGAAAGAAATTGCAAATAGCTTATCAAAGCCTGTCAATCCTAGGGTATTGTCTGA
GGCTTCTGATAAAACAAATCTCAGCAGGAAGCCATTTTATGGACAGCCAGAAAATTCAGGGATAAGTAAGAGCTCTATTCCAGAAAGTTGTCCCAGTTTTTCTCAACAGATAAAGCAATCTACTGATGACTGCAGTAGAGTAATTGAAGATGCTGGCAGGCTGGAGGAACCTTCACCTGTTCATGAGCATATAAGACATG
AAAAATCTTTTAAACAGCACATGGAAATTGTAGAAGAGAGTGGGAGTTCCTATACGAGTGAAGAGGACGAGAGTAGCAGTGTGACAGGGCTTGGTACCCCTGGTATTAAGGTATGGGATAGTAAAAGTAATAGAGCTGGTTCTGCATCACATCATCCCTTAGAAAATGATCAAGGTCATCACAAAAAGCAAGGAAACAAA
AGTCAGCTCCACTATCGTAGGTTATATAAAACAGCATCAGGTCGGAAAAGGACTAGATCCAAGCGGGGTGTAGATAACTGGCAAGAACTGGAAAGAACATCCTTTTATTTGGGAGATGGTCTGGACATATTGAACACTGCTCAGGCAGAGTCTATGAAAACTGAAGATCCAGAGGATGAGAGTGAAAATCAAAGTAGGGT
GTCTAGTGGTACCTTGGCTTGTTCATCAGCTGCTGCTGTCTGCAGTTCTGGAACAGCCAATTCATCTGAAATGAAATCTGAGAGCTCTCACTTGGCTGCAGCTTTACCATCTCAGCAACTGCGATGCAAGGTATTGGGAGCAAACTTTGTTAAAAGTGATTCCAAAACCATTGCTGTTTATTCTATCTCCGTGACAGATA
ATGAGAACCGTACATGGTCAATTAAAAGAAGgtgttgtatttaaaatcattgttattagttcttccatcttttctatattgtttaaaaacattgttttgaagaccagagtttggtgcccttttcttgtaaaagctttcagctataactgaatattttatgttgttaactcaagaaattaactggtatagtactctgaatt
ttatgctatattggctttctgcactattactagcctgactttttgtgataattgctgggaaattatatgggtttagATTTCGACATTTTGAGGAGCTACACCGACGGCTCAAGGTTTTGCCAGAATATTCATTACATCTGCCTCCCAAACGATTTTTATCGTCAAGTCTGGATGCTTCATTTGTATATGAACGCTGTAAT
TTGCTTGACAAGTATCTGAAGGATTTGCTTGTACTTCCAAATGTATCAGAATCTATTGAAGTCTGGGATTTTTTAAGTGTTGATTCACAGACTTATATGTTTTCGAATTCTCTCTCAATAATTGAGACCTTATCTG
Intron 8 GTTGGAGGTT ... TTTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.32 | 77 | 20 | 35 |
| A2 | 27.66 | 51 | 22 | 17 |
| A3 | 25.32 | 59 | 26 | 14 |
| A4 | 20.41 | 39 | 12 | 8 |
| A5 | 32.61 | 31 | 9 | 21 |
| A6 | 50 | 2 | 4 | 0 |
| A7 | 23.68 | 29 | 3 | 15 |
| A8 | 25.93 | 10 | 6 | 1 |
| A9 | 23.4 | 18 | 4 | 7 |
| A10 | 23.33 | 23 | 6 | 8 |
>TRINITY_DN123765_c0_g1_i10 from sample A2 / Example spliced isoformCCTCAATTCCCTTTTTACTATTTATCTAAACCGATCACAAAGTATCTACCCATCTCGTAGAAATTCAAACCCATATTTTGTTCTAACTACTCAACGTTTAACGTGCGGTGAAATGAACAAAAATGCTTTACTGAATGTTGTGTCAGATCAGAGGAGACAATACATATACCAAATTCAATACAAACAGGCGGAGGATCCAC
GAAATTCACCCCCTAACCTTCCCTGAATTCATATGCCAACTCTCGTCATGTTGCAAGCGCATACTTAAGGACATTTTCAGCAAGGTTTTCGAGTTTAATTTCAAAGGATCCGCGGGAATTTTCCAGTGTTTCGTGCATAATAGCTAGGGCAGGGTTGGAATTATTTTGTGCTTGCTATCGATGTTGGCGATCGAATTTTC
CACAGATGAAAATGGCTTCCAAGTCTCAGACAGCCAAAGACCTAGTGGAGGAAGCCAAGAAGCGGGCATTACTGCTTTCTATATGCGTCATCGGTCTCGCATATCTAATGTCCTTGACAAGCTCTTCAGTATGGATTAACATGCCTGCAGCAGTTCTCCTGATAGTTCTTGTTCGCTACATTTCATATGATGTTAGTGCT
CGTAGGAGGATTGCAGAGCAAGATACGCCATCTTCAGTGAACAACATTTTACAAAACCAAATGCCCCTTGATCATGCATCATCCCAACCTCACTCTGAACCAAGTGATTGGAGAAGGAAAGTTGATTCCCCAGTTGTTGAGGCAGCAATTGACAAACTAACAAAGCATCTTGTGTCTGAATGGATGACCAATCTGTGGTA
TGAGAAGATAACACCTGACAAAGATGCTCCAGAAGAGCTCACAGAAATCATGAATGGACTTCTTGGAGAAATTTGCTTGCGAGCCAAGGATGTGAATCTTATTGACCTTATCACCAGGGATACTGTCCATTTGGTGAGTGAGCATATAGATCTCTATCGAATAATACAGACCCAGATTGGCGAAGAAAAGTTGAGTAGCT
TGTCAAATGATGAAAGAGATGCGAAATTGAAGTTAACTCTAGCAGCAGATAACAAACTTCATCCAGCATTGTTTTCTGCCGAGGCAGAGCGCAAGGTTTTACAGCGTTTTATGGATGGTCTTATGAGTTTAACATGTAAACCCGACGACCTGCAATGCAAATTTTTCCGATATATTGCGAGAGAGCTTCTTGCCTGTGCA
GTGATGCGTCCAATCATGAACTTAGCGAGTCCCAAGTTCATCAATGAACGAATTGAATCTGCTGTTTTATCTCTCCGAAATAGGAATGGAAAACTAACTAAGACCTCGGAGCCAGGGACAAAACAGAGTAAATCCTCAAGATCAAGGTTTACACCTGATCATTTCTCTGGTTTTCTAGATCGCTCTATCGCGGGGGTTGA
ACTTGTGCAGCTTGGACCTAGCCATGGCAAAAAGTCTGTGGAAATTGATGGGACACAAAATGGAGCTTCCTCTACTTTTCATAATGAACCAAAGTATGCTTACTTTAAGTCATCAGCAGATATCCACCCAAAAAATCATATAATGCAATATTACCAACAAGAGGGTGAGACATCTGATATTGTGATTGCAGACAATTGGA
AGTCTCAATCTGAAAATGTTGAGGGGATAGAAACACACAATGTTGACAGTAGAATCATCCAGGCACGGCGATCCCCAGGTGGGGAGTGGGGTCAGATGCTTGATATTATCTCAAGGAGAAAGAAACAGGCCCTTGCTCCTGAGCATTTTGAGAATATGTGGGCAAAAGGGCGTAATTACAAAAAGAAAGAAATTGCAAAT
AGCTTATCAAAGCCTGTCAATCCTAGGGTATTGTCTGAGGCTTCTGATAAAACAAATCTCAGCAGGAAGCCATTTTATGGACAGCCAGAAAATTCAGGGATAAGTAAGAGCTCTATTCCAGAAAGTTGTCCCAGTTTTTCTCAACAGATAAAGCAATCTACTGATGACTGCAGTAGAGTAATTGAAGATGCTGGCAGGCT
GGAGGAACCTTCACCTGTTCATGAGCATATAAGACATGAAAAATCTTTTAAACAGCACATGGAAATTGTAGAAGAGAGTGGGAGTTCCTATACGAGTGAAGAGGACGAGAGTAGCAGTGTGACAGGGCTTGGTACCCCTGGTATTAAGGTATGGGATAGTAAAAGTAATAGAGCTGGTTCTGCATCACATCATCCCTTAG
AAAATGATCAAGGTCATCACAAAAAGCAAGGAAACAAAAGTCAGCTCCACTATCGTAGGTTATATAAAACAGCATCAGGTCGGAAAAGGACTAGATCCAAGCGGGGTGTAGATAACTGGCAAGAACTGGAAAGAACATCCTTTTATTTGGGAGATGGTCTGGACATATTGAACACTGCTCAGGCAGAGTCTATGAAAACT
GAAGATCCAGAGGATGAGAGTGAAAATCAAAGTAGGGTGTCTAGTGGTACCTTGGCTTGTTCATCAGCTGCTGCTGTCTGCAGTTCTGGAACAGCCAATTCATCTGAAATGAAATCTGAGAGCTCTCACTTGGCTGCAGCTTTACCATCTCAGCAACTGCGATGCAAGGTATTGGGAGCAAACTTTGTTAAAAGTGATTC
CAAAACCATTGCTGTTTATTCTATCTCCGTGACAGATAATGAGAACCGTACATGGTCAATTAAAAGAAGATTTCGACATTTTGAGGAGCTACACCGACGGCTCAAGGTTTTGCCAGAATATTCATTACATCTGCCTCCCAAACGATTTTTATCGTCAAGTCTGGATGCTTCATTTGTATATGAACGCTGTAATTTGCTTG
ACAAGTATCTGAAGGATTTGCTTGTACTTCCAAATGTATCAGAATCTATTGAAGTCTGGGATTTTTTAAGTGTTGATTCACAGACTTATATGTTTTCGAATTCTCTCTCAATAATTGAGACCTTATCTGTTGACCTTGATAACAGACAGTATGGGAAACATGCAAAATTCAATGAAAATAACACAAAGAAAACAAAAGAA
GCTTTAGATTGGAATTGTGATAAATCAGCATTAAGATGCATTGAGTCTGATTCTCATCTAGCAACAAGCCCTTCTGCTGAAGAATCTAGACAGCATGGTAGAGACACTGAACAGGAGCCTTCATTCTCTAAGAGCAAACAACAGGAAGGTATGCACGTTTCTTATTCAGAAAGTGATTCAGACATTGAGCAGCATGGAGG
CAAAATACATTTAAAGATATCTGAAGGGAGTAGAAATAAGGCAAAGGCAGAGGTGAACATACTGAATGATGCTCCTGATGTACTTGGTATGGAGGACGATTCTATGGTACCATCTGAGTGGATACCACCAAATTTGAGTGTACCAATATTGAATTTGGTAGATGTCATTTTCCAACTACAGGATGGTGGTTGGATCAGGC
GCCAAGCATTTTGGGTGGCAAAACAAGTACTACAGCTTGGCATGGGTGATGCGTTTGATGACTGGCTGATTGAGAAAGTTCAGCTTTTGCGAAAAGGAGAAGTCATCGCTTCAGCAATTAGTAAGATTGAACAGATTCTTTGGCCTGATGGTATATTCCTAACTAAACATCCTCGGCGCCAACACCCTCCAGCTTCCTCA
AAAGGTGATTCATCCATACCACATATCCCACCATCTTCCTCAAAAGGTGATCCATCTGCTCCACATATCACACCAACTTCCTCAAAAGGTGATCCGTTTGCTTCACATATTAGAGGAACAGCAACATCACCTAAGGAAGCGGAACATGGACAACATGAGGAGAAAGATAACCAAAGTTTGTTGGATCAACAGATGGAAGA
ATCCCGTCGTGCAAAATTTGTCCGAGAGTTAATGATTGGTAAGCTGAAGTGTCTGTTCTCATATCTTGGAAAAATAATTTAGATGATAGCTCACAGAGGTCCCTTTTACTTAGTTGGATTAGAATGTTCTTTTATGTTTGATAGTGTATTACAAGCAAAAAAAATTATCTTGTACTTGCAGAACTGAACTCAAGCTATTC
AAGAATATTTTGTATCTTTTGACAATCAAAATATGCTAGATCATCAAATTTGATTAGTAAGTTGATCAGTTGTATAAAATTTTCCATCAAATTTT
>TRINITY_DN123765_c0_g1_i13 from sample A2 / Example unspliced isoform:CCTCAATTCCCTTTTTACTATTTATCTAAACCGATCACAAAGTATCTACCCATCTCGTAGAAATTCAAACCCATATTTTGTTCTAACTACTCAACGTTTAACGTGCGGTGAAATGAACAAAAATGCTTTACTGAATGTTGTGTCAGATCAGAGGAGACAATACATATACCAAATTCAATACAAACAGGCGGAGGATCCAC
GAAATTCACCCCCTAACCTTCCCTGAATTCATATGCCAACTCTCGTCATGTTGCAAGCGCATACTTAAGGACATTTTCAGCAAGGTTTTCGAGTTTAATTTCAAAGGATCCGCGGGAATTTTCCAGTGTTTCGTGCATAATAGCTAGGGCAGGGTTGGAATTATTTTGTGCTTGCTATCGATGTTGGCGATCGAATTTTC
CACAGATGAAAATGGCTTCCAAGTCTCAGACAGCCAAAGACCTAGTGGAGGAAGCCAAGAAGCGGGCATTACTGCTTTCTATATGCGTCATCGGTCTCGCATATCTAATGTCCTTGACAAGCTCTTCAGTATGGATTAACATGCCTGCAGCAGTTCTCCTGATAGTTCTTGTTCGCTACATTTCATATGATGTTAGTGCT
CGTAGGAGGATTGCAGAGCAAGATACGCCATCTTCAGTGAACAACATTTTACAAAACCAAATGCCCCTTGATCATGCATCATCCCAACCTCACTCTGAACCAAGTGATTGGAGAAGGAAAGTTGATTCCCCAGTTGTTGAGGCAGCAATTGACAAACTAACAAAGCATCTTGTGTCTGAATGGATGACCAATCTGTGGTA
TGAGAAGATAACACCTGACAAAGATGCTCCAGAAGAGCTCACAGAAATCATGAATGGACTTCTTGGAGAAATTTGCTTGCGAGCCAAGGATGTGAATCTTATTGACCTTATCACCAGGGATACTGTCCATTTGGTGAGTGAGCATATAGATCTCTATCGAATAATACAGACCCAGATTGGCGAAGAAAAGTTGAGTAGCT
TGTCAAATGATGAAAGAGATGCGAAATTGAAGTTAACTCTAGCAGCAGATAACAAACTTCATCCAGCATTGTTTTCTGCTGAGGCAGAGCGCAAGgttggaggttgccttgcataaaagtttaaaactgacatataaactgcagctaaagtgccatatatatctttattcttgttagtttgtaacctgtatcagatcctg
ccttacgatggttcaaaggtcactttcataaaattaacatttatctgtagcttgaaatatggctgctattttgtatctgagaaatttgtaacctcttctgattcgaacctttaccagtacggtttttttgcagGTTTTACAGCGTTTTATGGATGGTCTTATGAGTTTAACATGTAAACCCGACGACCTGCAATGCAAAT
TTTTCCGATATATTGCGAGAGAGCTTCTTGCCTGTGCAGTGATGCGTCCAATCATGAACTTAGCGAGTCCCAAGTTCATCAATGAACGAATTGAATCTGCTGTTTTATCTCTCCGAAATAGGAATGGAAAACTAACTAAGACCTCGGAGCCAGGGACAAAACAGAGTAAATCCTCAAGATCAAGGTTTACACCTGATCAT
TTCTCTGGTTTTCTAGATCGCTCTATCGCGGGGGTTGAACTTGTGCAGCTTGGACCTAGCCATGGCAAAAAGTCTGTGGAAATTGATGGGACACAAAATGGAGCTTCCTCTACTTTTCATAATGAACCAAAGTATGCTTACTTTAAGTCATCAGCAGATATCCACCCAAAAAATCATATAATGCAATATTACCAACAAGA
GGGTGAGACATCTGATATTGTGATTGCAGACAATTGGAAGTCTCAATCTGAAAATGTTGAGGGGATAGAAACACACAATGTTGACAGTAGAATCATCCAGGCACGGCGATCCCCAGGTGGGGAGTGGGGTCAGATGCTTGATATTATCTCAAGGAGAAAGAAACAGGCCCTTGCTCCTGAGCATTTTGAGAATATGTGGG
CAAAAGGGCGTAATTACAAAAAGAAAGAAATTGCAAATAGCTTATCAAAGCCTGTCAATCCTAGGGTATTGTCTGAGGCTTCTGATAAAACAAATCTCAGCAGGAAGCCATTTTATGGACAGCCAGAAAATTCAGGGATAAGTAAGAGCTCTATTCCAGAAAGTTGTCCCAGTTTTTCTCAACAGATAAAGCAATCTACT
GATGACTGCAGTAGAGTAATTGAAGATGCTGGCAGGCTGGAGGAACCTTCACCTGTTCATGAGCATATAAGACATGAAAAATCTTTTAAACAGCACATGGAAATTGTAGAAGAGAGTGGGAGTTCCTATACGAGTGAAGAGGACGAGAGTAGCAGTGTGACAGGGCTTGGTACCCCTGGTATTAAGGTATGGGATAGTAA
AAGTAATAGAGCTGGTTCTGCATCACATCATCCCTTAGAAAATGATCAAGGTCATCACAAAAAGCAAGGAAACAAAAGTCAGCTCCACTATCGTAGGTTATATAAAACAGCATCAGGTCGGAAAAGGACTAGATCCAAGCGGGGTGTAGATAACTGGCAAGAACTGGAAAGAACATCCTTTTATTTGGGAGATGGTCTGG
ACATATTGAACACTGCTCAGGCAGAGTCTATGAAAACTGAAGATCCAGAGGATGAGAGTGAAAATCAAAGTAGGGTGTCTAGTGGTACCTTGGCTTGTTCATCAGCTGCTGCTGTCTGCAGTTCTGGAACAGCCAATTCATCTGAAATGAAATCTGAGAGCTCTCACTTGGCTGCAGCTTTACCATCTCAGCAACTGCGA
TGCAAGGTATTGGGAGCAAACTTTGTTAAAAGTGATTCCAAAACCATTGCTGTTTATTCTATCTCCGTGACAGATAATGAGAACCGTACATGGTCAATTAAAAGAAGATTTCGACATTTTGAGGAGCTACACCGACGGCTCAAGGTTTTGCCAGAATATTCATTACATCTGCCTCCCAAACGATTTTTATCGTCAAGTCT
GGATGCTTCATTTGTATATGAACGCTGTAATTTGCTTGACAAGTATCTGAAGGATTTGCTTGTACTTCCAAATGTATCAGAATCTATTGAAGTCTGGGATTTTTTAAGTGTTGATTCACAGACTTATATGTTTTCGAATTCTCTCTCAATAATTGAGACCTTATCTGTTGACCTTGATAACAGACAGTATGGGAAACATG
CAAAATTCAATGAAAATAACACAAAGAAAACAAAAGAAGCTTTAGATTGGAATTGTGATAAATCAGCATTAAGATGCATTGAGTCTGATTCTCATCTAGCAACAAGCCCTTCTGCTGAAGAATCTAGACAGCATGGTAGAGACACTGAACAGGAGCCTTCATTCTCTAAGAGCAAACAACAGGAAGGTATGCACGTTTCT
TATTCAGAAAGTGATTCAGACATTGAGCAGCATGGAGGCAAAATACATTTAAAGATATCTGAAGGGAGTAGAAATAAGGCAAAGGCAGAGGTGAACATACTGAATGATGCTCCTGATGTACTTGGTATGGAGGACGATTCTATGGTACCATCTGAGTGGATACCACCAAATTTGAGTGTACCAATATTGAATTTGGTAGA
TGTCATTTTCCAACTACAGGATGGTGGTTGGATCAGGCGCCAAGCATTTTGGGTGGCAAAACAAGTACTACAGCTTGGCATGGGTGATGCGTTTGATGACTGGCTGATTGAGAAAGTTCAGCTTTTGCGAAAAGGAGAAGTCATCGCTTCAGCAATTAGTAAGATTGAACAGATTCTTTGGCCTGATGGTATATTCCTAA
CTAAACATCCTCGGCGCCAACACCCTCCAGCTTCCTCAAAAGGTGATTCATCCATACCACATATCCCACCATCTTCCTCAAAAGGTGATCCATCTGCTCCACATATCACACCAACTTCCTCAAAAGGTGATCCGTTTGCTTCACATATTAGAGGAACAGCAACATCACCTAAGGAAGCGGAACATGGACAACATGAGGAG
AAAGATAACCAAAGTTTGTTGGATCAACAGATGGAAGAATCCCGTCGTGCAAAATTTGTCCGAGAGTTAATGATTGATAATGCCCCAGCTGCTCTTGTTGGTCTCGTAGGACGCAAGGAGTACGAGCGATGTGCCCGGGATATTTATTTCTTTCTTCAATCAGCAGTCTGTTTGAAGCAATTAGCTTACGGTCTTGTGGA
GATGCTTCTCCTAGCAGCATTTCCTGAGCTCCATAATATTGTGAGTTCTTGCCATACAGAAAAGGGAAATTTTGAGGTAATTTAACTTTCAAGAGATGAAATGATTCCATTTATTCGTTCCAATTGTTCTGGCTTTCAGTAGTGATTCATTGTGGCCATGGTTGATGTTGATTGGATGAGTTATGTTAAAATGGAATTGG
TCCATTTGTTGAGTCCACAAATATGCTTATGGATGACGTGTCCTTAGTATTCAAAGTTTGTGGGCATTTTTCCCCTTGTCAATATTGTATTTTGAGAACATAACCAAGAGCAATGGCAAATCTAGTGCCTGAAAGTATTCGTGGTTCGGTTGAATTAAGTTGTTATTGTTTTGCTCAGCTTTGCTCAATATCAAGCATTG
AGTAAGTCCTTTAATAATATGGTTTCAATTTTTGTAGTAGCTTATAATATAAATAAACAAAAGAATCCATGAATGGGCTCATACCCAAGTTATTACCTGGATGCGTCCTTAAGTGCTAAGTGTTTCCTGGGATTTTGCTGCTTGTCAATATTGTATTTTGAGAACTTAACTGAGAGCAAAGTCAAATCTAGTGCTTGCGA
GTATTCTTGGTTTGGTTGAATCAAGTTGTTATTGTTTTGTTCAGCTTTGCTTAATATCAGGCACCGAG
Intron 9 GTAATGCTTG ... TTTCTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.17 | 41 | 3 | 14 |
| A2 | 21.05 | 30 | 8 | 8 |
| A3 | 20 | 44 | 9 | 13 |
| A4 | 24 | 38 | 12 | 12 |
| A5 | 16.28 | 18 | 4 | 3 |
| A6 | 9.09 | 5 | 1 | 0 |
| A7 | 15.38 | 11 | 2 | 2 |
| A8 | 15.38 | 11 | 1 | 3 |
| A9 | 18.37 | 20 | 3 | 6 |
| A10 | 4.76 | 10 | 1 | 0 |
>TRINITY_DN130187_c0_g1_i19 from sample A1 / Example spliced isoformATATAAACTGCAGCTAAAGTGCCATATATATCTTTATTCTTGTTAGTTTGTAACCTGTATCAGATCCTGCCTTACGATGGTTCAAAGGTCACTTTCATAAAATTAACATTTATCTGTAGCTTGAAATATGGCTGCTATTTTGTATCTGAGAAATTTGTAACCTCTTCTGATTCGAACCTTTACCAGTACGGTTTTTTTGC
AGGTTTTACAGCGTTTTATGGATGGTCTTATGAGTTTAACATGTAAACCCGACGACCTGCAATGCAAATTTTTCCGATATATTGCGAGAGAGCTTCTTGCCTGTGCAGTGATGCGTCCAATCATGAACTTAGCGAGTCCCAAGTATTTTCTCGTTCATCAATGAACGAATTGAATCTGCTGTTTTATCTCTCCGAAATAG
GAATGGAAAACTAACTAAGACCTCGGAGCCAGGGACAAAACAGAGTAAATCCTCAAGATCAAGGTTTACACCTGATCATTTCTCTGGTTTTCTAGATCGCTCTATCGCGGGGGTTGAACTTGTGCAGCTTGGACCTAGCCATGGCAAAAAGTCTGTGGAAATTGATGGGACACAAAATGGAGCTTCCTCTACTTTTCATA
ATGAACCAAAGTATGCTTACTTTAAGTCATCAGCAGATATCCACCCAAAAAATCATATAGTGCAATATTACCAACAAGAGGGTGAGACATCTGATATTGTGATTGCAGACAATTGGAAGTCTCAATCTGAAAATGTTGAGGGGATAGAAACACACAATGTTGACAGTAGAATCATCCAGGCACGGCGATCCCCAGGTGGG
GAGTGGGGTCAGATGCTTGATATTATCTCAAGGAGAAAGAAACAGGCCCTTGCTCCTGAGCATTTTGAGAATATGTGGGCAAAAGGGCGTAATTACAAAAAGAAAGAAATTGCAAATAGCTTATCAAAGCCTGTCAATCCTAGGGTATTGTCTGAGGCTTCTGATAAAACAAATCTCAGCAGGAAGCCATTTTATGGACA
GCCAGAAAATTCAGGGATAAGTAAGAGCTCTATTCCAGAAAGTTGTCCCAGTTTTTCTCAACAGATAAAGCAATCTACTGATGACTGCAGTAGAGTAATTGAAGATGCTGGCAGGCTGGAGGAACCTTCACCTGTTCATGAGCATATAAGACATGAAAAATCTTTTAAACAGCACATGGAAATTGTAGAAGAGAGTGGGA
GTTCCTATACGAGTGAAGAGGACGAGAGTAGCAGTGTGACAGGGCTTGGTACCCCTGGTATTAAGGTATGGGATAGTAAAAGTAATAGAGCTGGTTCTGCATCACATCATCCCTTAGAAAATGATCAAGGTCATCACAAAAAGCAAGGAAACAAAAGTCAGCTCCACTATCGTAGGTTATATAAAACAGCATCAGGTCGG
AAAAGGACTAGATCCAAGCGGGGTGTAGATAACTGGCAAGAACTGGAAAGAACATCCTTTTATTTGGGAGATGGTCTGGACATATTGAACACTGCTCAGGCAGAGTCTATGAAAACTGAAGATCCAGAGGATGAGAGTGAAAATCAAAGTAGGGTGTCTAGTGGTACCTTGGCTTGTTCATCAGCTGCTGCTGTCTGCAG
TTCTGGAACAGCCAATTCATCTGAAATGAAATCTGAGAGCTCTCACTTGGCTGCAGCTTTACCATCTCAGCAACTGCGATGCAAGG
>TRINITY_DN130187_c0_g1_i3 from sample A1 / Example unspliced isoform:AAAGTACCTACCCATCTCGTAGAAATTCAAACCCATATTTTGTTCTAACTACTCAACGTTTAACGTGCGGTGAAATGAACAAAAATGCTTTACTGAATGTCAGAGCAGAGCAGAGGAGACAATACATATACCAAATTCAATACAAACAGGCGGAGGATCCACGAAATTCACCCCCTAACCTTCCCTGAATTCATATGCCA
ACTCTCGTCATGTTGCAAGCGCATAGTTAAGGACATTTTCAGCAAGGTTTTCGAGTTTAATTTCAAAGGATCCGCGGGAATTTTCCAGTGTTTCGTGCATAATAGCTAGGGCAGGGTTGGAATTATTTTGTGCTTGCTATCGATGTTGGCGATCGAATTTTCCACAGATGAAAATGGCTTCCAAGTCTCAGACAGCCAAA
GACCTAGTGGAGGAAGCCAAGAAGCGGGCATTATTGCTTTCTATATGCGTCATCGGTCTCGCATATCTAATGTCCTTGACAAGCTCTTCAGTATGGATTAACATGCCTGCAGCAGTTCTCCTGATAGTTCTTGTTCGCTACATTTCATATGATGTTAGTGCTCGTAGGAGGATTGCAGAGCAAGATACGCCATCTTCAGT
GAACAACATTTTACAAAACCAAATGCCCCTTGATCATGCATCATCCCAACCTCACTCTGAACCAAGTGATTGGAGAAGGAAAGTTGATTCCCCAGTTGTTGAGGCAGCAATTGACAAACTAACAAAGCATCTTGTGTCTGAATGGATGACCAATCTGTGGTATGAGAAGATAACACCTGACAAAGATGCTCCAGAAGAGC
TCACAGAAATCATGAATGGACTTCTTGGAGAAATTTGCTTGCGAGCCAAGGATGTGAATCTTATTGACCTTATCACCAGGGATACTGTCCATTTGGTGAGTGCGCATATAGATCTCTATCGAATAATACAGACCCAGATTGGCGAAGAAAAGTTGAGTAGCTTGTCAAATGATGAAAGAGATGCGAAATTGAAGTTAACT
CTAGCAGCAGATAACAAACTTCATCCAGCATTGTTTTCTGCCGAGGCAGAGCGCAAGGTTTTACAGCGTTTTATGGATGGTCTTATGAGTTTAACATGTAAACCCGACGACCTGCAATGCAAATTTTTCCGATATATTGCGAGAGAGCTTCTTGCCTGTGCAGTGATGCGTCCAATCATGAACTTAGCGAGTCCCAAGTA
TTTTCTCgtaatgcttgttccatagtcactagtttttgtagatgttcctgagattcagtctcattgattaatcattagacattatataaatgttttaagttattgtagtcactttgatatgtatattatttgatcattgtctgcaatttatgatctttctggcagGTTCATCAATGAACGAATTGAATCTGCTGTTTTAT
CTCTCCGAAATAGGAATGGAAAACTAACGAAGGCCTCGGAGCCAGGGACAAAACAGAGTAAATCCTCAAGATCAAGGTTTACACCTGATCATTTCTCTGGTTTTCTAGATCGCTCTATCGCGGGGGTTGAACTTGTGCAGCTTGGACCTAGCCATGGCAAAAAGTCTGTGGAAATTGATGGGACACAAAATGGAGCTTCC
TCTACTTTTCATAATGAACCAAAGTATGCTTACTTTAAGTCATCAGCAGATATCCACCCAAAAAATCATATAGTGCAATATTACCAACAAGAGGGTGAGACATCTGATATTGTGATTGCAGACAATTGGAAGTCTCAATCTGAAAATGTTGAGGGGATAGAAACACACAATGTTGACAGTAGAATCATCCAGGCACGGCG
ATCCCCAGGTGGGGAGTGGGGTCAGATGCTTGATATTATCTCAAGGAGAAAGAAACAGGCCCTTGCTCCTGAGCATTTTGAGAATATGTGGGCAAAAGGGCGTAATTACAAAAAGAAAGAAATTGCAAATAGCTTATCAAAGCCTGTCAATCCTAGGGTATTGTCTGAGGCTTCTGATAAAACAAATCTCAGCAGGAAGC
CATTTTATGGACAGCCAGAAAATTCAGGGATAAGTAAGAGCTCTATTCCAGAAAGTTGTCCCAGTTTTTCTCAACAGATAAAGCAATCTACTGATGACTGCAGTAGAGTAATTGAAGATGCTGGCAGGCTGGAGGAACCTTCACCTGTTCATGAGCATATAAGACATGAAAAATCTTTTAAACAGCACATGGAAATTGTA
GAAGAGAGTGGGAGTTCCTATACGAGTGAAGAGGACGAGAGTAGCAGTGTGACAGGGCTTGGTACCCCTGGTATTAAGGTATGGGATAGTAAAAGTAATAGAGCTGGTTCTGCATCACATCATCCCTTAGAAAATGATCAAGGTCATCACAAAAAGCAAGGAAACAAAAGTCAGCTCCACTATCGTAGGTTATATAAAAC
AGCATCAGGTCGGAAAAGGACTAGATCCAAGCGGGGTGTAGATAACTGGCAAGAACTGGAAAGAACATCCTTTTATTTGGGAGATGGTCTGGACATATTGAACACTGCTCAGGCAGAGTCTATGAAAACTGAAGATCCAGAGGATGAGAGTGAAAATCAAAGTAGGGTGTCTAGTGGTACCTTGGCTTGTTCATCAGCTG
CTGCTGTCTGCAGTTCTGGAACAGCCAATTCATCTGAAATGAAATCTGAGAGCTCTCACTTGGCTGCAGCTTTACCATCTCAGCAACTGCGATGCAAGGTATTGGGAGCAAACTTTGTTAAAAGTGATTCCAAAACCATTGCTGTTTATTCTATCTCCGTGACAGATAATGAGAACCGTACATGGTCAATTAAAAGAAGA
TTTCGACATTTTGAGGAGCTACACCGACGGCTCAAGGTTTTGCCAGAATATTCATTACATCTGCCTCCCAAACGATTTTTATCGTCAAGTCTGGATGCTTCATTTGTATATGAACGCTGTAATTTGCTTGACAAGTATCTGAAGGATTTGCTTGTACTTCCAAATGTATCAGAATCTATTGAAGTCTGGGATTTTTTAAG
TGTTGATTCACAGACTTATATGTTTTCGAATTCTCTCTCAATAATTGAGACCTTATCTGTTGACCTTGATAACAGACAGTATGGGAAACATGCAAAATTCAATGAAAATAACACAAAGAAAACAAAAGAAGCTTTAGATTGGAATTGTGATAAATCAGCATTAAGATGCATTGAGTCTGATTCTCATCTAGCAACAAGCC
CTTCTGCTGAAGAATCTAGACAGCATGGTAGAGACACTGAACAGGAGCCTTCATTCTCTAAGAGCAAACAACAGGAAGGTATGCACGTTTCTTATTCAGAAAGTGATTCAGACATTGAGCAGCATGGAGGCAAAATACATTTAAAGATATCTGAAGGGAGTAGAAATAAGGCAAAGGCAGAGGTGAACATACTGAATGAT
GCTCCTGATGTACTTGGTATGGAGGATGATTCTATGGTACCATCTGAGTGGATACCACCAAATTTGAGTGTACCAATATTGAATTTGGTAGATGTCATTTTCCAACTACAGGATGGTGGTTGGATCAGGCGCCAAGCATTTTGGGTGGCAAAACAAGTACTACAGCTTGGCATGGGTGATGCGTTTGATGACTGGCTGAT
TGAGAAAGTTCAGCTTTTGCGAAAAGGAGAAGTCATCGCTTCAGCAATTAGTAAGATTGAACAGATTCTTTGGCCTGATGGTATATTCCTAACTAAACATCCTCGGCGCCAACACCCTCCAGCTTCCTCAAAAGGTGATTCATCCATACCACATATCCCACCATCTTCCTCAAAAGGTGATCCATCTGCTCCACATATCA
CACCAACTTCCTCAAAAGGTGATCCGTTTGCTTCACATATTAGAGGAACAGCAACATCACCTAAGGAAGCGGAACATGGACAACATGAGGAGAAAGATAACCAAAGTTTGTTGGATCAACAGATGGAAGAATCCCGTCGTGCAAAATTTGTCCGAGAGTTAATGATTGGTAAGCTGAAGTGTCTGTTCTCATATCTTGGA
AAAATAATTTAGATGATAGCTCACAGAGGTCCCTTTTACTTAGTTGGATTAGAATGTTCTTTTATGTTTGATAGTGTATTACAAGCAAAAAAAATTATCTTGTACTTGCAGAACTGAACTCAAGCTATTCAAGAATATTTTGTATCCTTTGACAATCAAAATATGCTAGATCATCAAATTTGATTAGTAAGTTGATCAGT
TGTATAAAAT
Intron 10 GCAAGTATGA ... TCTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.04 | 82.3 | 37 | 8 |
| A2 | 33.08 | 58.7 | 29 | 5 |
| A3 | 24.76 | 79 | 26 | 3 |
| A4 | 23.4 | 55.7 | 17 | 2 |
| A5 | 28.57 | 25 | 10 | 4 |
| A6 | 23.72 | 29 | 9 | 0 |
| A7 | 24.79 | 73 | 24 | 0 |
| A8 | 23.85 | 38.3 | 12 | 0 |
| A9 | 26.4 | 56 | 20 | 0 |
| A10 | 30.45 | 61.7 | 27 | 0 |
>TRINITY_DN120451_c0_g1_i1 from sample A3 / Example spliced isoformAACACAACGAACGAGGATCATAACACTCTCAAAAACCTAAAAAAAAAATTAATATTTGTGTGGGCACCTCAATTCCCTTTTTACTATTTATCTAAACCGATCACAAAGTATCTACCCATCTCGTAGAAATTCAAACCCATATTTTGTTCTAACTACTCAACGTTTAACGTGCGGTGAAATGAACAAAAATGCTTTACTGA
ATGTCAGAGCAGAGCAGAGGAGACAATACATATACCAAATTCAATACAAACAGGCGGAGGATCCACGAAATTCACCCCCTAACCTTCCCTGAATTCATATGCCAACTCTCGTCATGTTGCAAGCGCATAGTTAAGGACATTTTCAGCAAGGTTTTCGAGTTTAATTTCAAAGGATCCGCGGGAATTTTCCAGTGTTTCGT
GCATAATAGCTAGGGCAGGGTTGGAATTATTTTGTGCTTGCTATCGATGTTGGCGATCGAATTTTCCACAGATGAAAATGGCTTCCAAGTCTCAGACAGCCAAAGACCTAGTGGAGGAAGCCAAGAAGCGGGCATTACTGCTTTCTATATGCGTCATCGGTCTCGCATATCTAATGTCCTTGACAAGCTCTTCAGTATGG
ATTAACATGCCTGCAGCAGTTCTCCTGATAGTTCTTGTTCGCTACATTTCATATGATGTTAGTGCTCGTAGGAGGATTGCAGAGCAAGATACGCCATCTTCAGTGAACAACATTTTACAAAACCAAATGCCCCTTGATCATGCATCATCCCAACCTCACTCTGAACCAAGTGATTGGAGAAGGAAAGTTGATTCCCCAGT
TGTTGAGGCAGCAATTGACAAACTAACAAAGCATCTTGTGTCTGAATGGATGACCAATCTGTGGTATGAGAAGATAACACCTGACAAAGATGCTCCAGAAGAGCTCACAGAAATCATGAATGGACTTCTTGGAGAAATTTGCTTGCGAGCCAAGGATGTGAATCTTATTGACCTTATCACCAGGGATACTGTCCATTTGG
TGAGTGAGCATATAGATCTCTATCGAATAATACAGACCCAGATTGGCGAAGAAAAGTTGAGTAGCTTGTCAAATGATGAAAGAGATGCGAAATTGAAGTTAACTCTAGCAGCAGATAACAAACTTCATCCAGCATTGTTTTCTGCCGAGGCAGAGCGCAAGGTTTTACAGCGTTTTATGGATGGTCTTATGAGTTTAACA
TGTAAACCCGACGACCTGCAATGCAAATTTTTCCGATATATTGCGAGAGAGCTTCTTGCCTGTGCAGTGATGCGTCCAATCATGAACTTAGCGAGTCCCAAGTTCATCAATGAACGAATTGAATCTGCTGTTTTATCTCTCCGAAATAGGAATGGAAAACTAACGAAGGCCTCGGAGCCAGGGACAAAACAGAGTAAATC
CTCAAGATCAAGGTTTACACCTGATCATTTCTCTGGTTTTCTAGATCGCTCTATTGCGGGGGTTGAACTTGTGCAGCTTGGACCTAGCCATGGCAAAAAGTCTGTGGAAATTGATGGGACACAAAATGGAGCTTCCTCTACTTTTCATAATGAACCAAAGTATGCTTACTTTAAGTCATCAGCAGATATCCACCCAAAAA
ATCATATAATGCAATATTACCAACAAGAGGGTGAGACATCTGATATTGTGATTGCAGACAATTGGAAGTCTCAATCTGAAAATGTTGAGGGGATAGAAACACACAATGTTGACAGTAGAATCATCCAGGCACGGCGATCCCCAGGTGGGGAGTGGGGTCAGATGCTTGATATTATCTCAAGGAGAAAGAAACAGGCCCTT
GCTCCTGAGCATTTTGAGAATATGTGGGCAAAAGGGCGTAATTACAAAAAGAAAGAAATTGCAAATAGCTTATCAAAGCCTGTCAATCCTAGGGTATTGTCTGAGGCTTCTGATAAAACAAATCTCAGCAGGAAGCCATTTTATGGACAGCCAGAAAATTCAGGGATAAGTAAGAGCTCTATTCCAGAAAGTTGTCCCAG
TTTTTCTCAACAGATAAAGCAATCTACTGATGACTGCAGTAGAGTAATTGAAGATGCTGGCAGGCTGGAGGAACCTTCACCTGTTCATGAGCATATAAGACATGAAAAATCTTTTAAACAGCACATGGAAATTGTAGAAGAGAGTGGGAGTTCCTATACGAGTGAAGAGGACGAGAGTAGCAGTGTGACAGGGCTTGGTA
CCCCTGGTATTAAGGTATGGGATAGTAAAAGTAATAGAGCTGGTTCTGCATCACATCATCCCTTAGAAAATGATCAAGGTCATCACAAAAAGCAAGGAAACAAAAGTCAGCTCCACTATCGTAGGTTATATAAAACAGCATCAGGTCGGAAAAGGACTAGATCCAAGCGGGGTGTAGATAACTGGCAAGAACTGGAAAGA
ACATCCTTTTATTTGGGAGATGGTCTGGACATATTGAACACTGCTCAGGCAGAGTCTATGAAAACTGAAGATCCAGAGGATGAGAGTGAAAATCAAAGTAGGGTGTCTAGTGGTACCTTGGCTTGTTCATCAGCTGCTGCTGTCTGCAGTTCTGGAACAGCCAATTCATCTGAAATGAAATCTGAGAGCTCTCACTTGGC
TGCAGCTTTACCATCTCAGCAACTGCGATGCAAGGTATTGGGAGCAAACTTTGTTAAAAGTGATTCCAAAACCATTGCTGTTTATTCTATCTCCGTGACAGATAATGAGAACCGTACATGGTCAATTAAAAGAAGATTTCGACATTTTGAGGAGCTACACCGACGGCTCAAGGTTTTGCCAGAATATTCATTACATCTGC
CTCCCAAACGATTTTTATCGTCAAGTCTGGATGCTTCATTTGTATATGAACGCTGTAATTTGCTTGACAAGTATCTGAAGGATTTGCTTGTACTTCCAAATGTATCAGAATCTATTGAAGTCTGGGATTTTTTAAGTGTTGATTCACAGACTTATATGTTTTCGAATTCTCTCTCAATAATTGAGACCTTATCTGTTGAC
CTTGATAACAGACAGTATGGGAAACATGCAAAATTCAATGAAAATAACACAAAGAAAACAAAAGAAGCTTTAGATTGGAATTGTGATAAATCAGCATTAAGATGCATTGAGTCTGATTCTCATCTAGCAACAAGCCCTTCTGCTGAAGAATCTAGACAGCATGGTAGAGACACTGAACAGGAGCCTTCATTCTCTAAGAG
CAAACAACAGGAAGGTATGCACGTTTCTTATTCAGAAAGTGATTCAGACATTGAGCAGCATGGAGGCAAAATACATTTAAAGATATCTGAAGGGAGTAGAAATAAGGCAAAGGCAGAGGTGAACATACTGAATGATGCTCCTGATGTACTTGGTATGGAGGACGATTCTATGGTACCATCTGAGTGGATACCACCAAATT
TGAGTGTACCAATATTGAATTTGGTAGATGTCATTTTCCAACTACAGGATGGTGGTTGGATCAGGCGCCAAGCATTTTGGGTGGCAAAACAAGTACTACAGCTTGGCATGGGTGATGCGTTTGATGACTGGCTGATTGAGAAAGTTCAGCTTTTGCGAAAAGGAGAAGTCATCGCTTCAGCAATTAGTAAGATTGAACAG
ATTCTTTGGCCTGATGGTATATTCCTAACTAAACATCCTCGGCGCCAACACCCTCCAGCTTCCTCAAAAGGTGATTCATCCATACCACATATCCCACCATCTTCCTCAAAAGGTGATCCATCTGCTCCACATATCACACCAACTTCCTCAAAAGGTGATCCGTTTGCTTCACATATTAGAGGAACAGCAACATCACCTAA
GGAAGCGGAACATGGACAACATGAGGAGAAAGATAACCAAAGTTTGTTGGATCAACAGATGGAAGAATCCCGTCGTGCAAAATTTGTCCGAGAGTTAATGATTGATAATGCCCCAGCTGCTCTTGTTGGTCTCGTAGGACGCAAGGAGTACGAGCGATGTGCCCGGGATATTTATTTCTTTCTTCAATCAGCAGTCTGTT
TGAAGCAATTAGCTTACGGTCTTGTGGAGATGCTTCTCCTAGCAGCATTTCCTGAGCTCCATAATATTGTGAGTTCTTGCCATACAGAAAAGGGAAATTTTGAGGTAATTTAACTTTCAAGAGATGAAATGATTCCATTTATTCGTTCCAATTGTTCTGGCTTTCAGTAGTGATTCATTGTGGCCATGGTTGATGTTGAT
TGGATGAGTTATGTTAAAATGGAATTGGTCCATTTGTTGAGTCCACAAATATGCTTATGGATGACGTGTCCTTAGTATTCAAAGTTTGTGGGCATTTTTCCCCTTGTCAATATTGTATTTTGAGAACATAACCAAGAGCAATGGCAAATCTAGTGCCTGAAAGTATTCGTGGTTCGGTTGAATTAAGTTGTTATTGTTTT
GCTCAGCTTTGCTCAATATCAAGCATTGAGTAAGTCCTTTAATAATATGGTTTCAATTTTTGTAGTAGCTTATAATATAAATAAACAAAAGAATCCATGAATGGGCTCATACCCAAGTTATTACCTGGATGCGTCCTTAAGTGCTAAGTGTTTCCTGGGATTTTGCTGCTTGTCAATATTGTATTTTGAGAACTTAACTG
AGAGCAAAGTCAAATCTAGTGCTTGCAAGTATTTGTGGTTCGGTCGATTCAAGTTGTTATTGTTTTGTTCGGCTTTGCTCAACATCAGGCATTGAGTAAGTTATTTAATATTGTGGTTTCAATTTTCCTATTAGAATTTACAACTAACAAAGGAACACATGGATGGGCTCATACGCAAGTTACCATCTGGATGTGTCCTT
AAGTTTTCAAAGTTTGCTGGGATTTTGCCCCTTGTCGATATTGTATTTCAAGAACATAAACAAGAGCAGGGACCAAATCTAGTGCCTGCAAGTATTCAGGGCTCAGTTGAATTATGCTATTGTTTTGCTCAATATGAAGCATTAAGTCCTTC
>TRINITY_DN120451_c0_g1_i3 from sample A3 / Example unspliced isoform:AACACAACGAACGAGGATCATAACACTCTCAAAAACCTAAAAAAAAAATTAATATTTGTGTGGGCACCTCAATTCCCTTTTTACTATTTATCTAAACCGATCACAAAGTATCTACCCATCTCGTAGAAATTCAAACCCATATTTTGTTCTAACTACTCAACGTTTAACGTGCGGTGAAATGAACAAAAATGCTTTACTGA
ATGTCAGAGCAGAGCAGAGGAGACAATACATATACCAAATTCAATACAAACAGGCGGAGGATCCACGAAATTCACCCCCTAACCTTCCCTGAATTCATATGCCAACTCTCGTCATGTTGCAAGCGCATAGTTAAGGACATTTTCAGCAAGGTTTTCGAGTTTAATTTCAAAGGATCCGCGGGAATTTTCCAGTGTTTCGT
GCATAATAGCTAGGGCAGGGTTGGAATTATTTTGTGCTTGCTATCGATGTTGGCGATCGAATTTTCCACAGATGAAAATGGCTTCCAAGTCTCAGACAGCCAAAGACCTAGTGGAGGAAGCCAAGAAGCGGGCATTACTGCTTTCTATATGCGTCATCGGTCTCGCATATCTAATGTCCTTGACAAGCTCTTCAGTATGG
ATTAACATGCCTGCAGCAGTTCTCCTGATAGTTCTTGTTCGCTACATTTCATATGATGTTAGTGCTCGTAGGAGGATTGCAGAGCAAGATACGCCATCTTCAGTGAACAACATTTTACAAAACCAAATGCCCCTTGATCATGCATCATCCCAACCTCACTCTGAACCAAGTGATTGGAGAAGGAAAGTTGATTCCCCAGT
TGTTGAGGCAGCAATTGACAAACTAACAAAGCATCTTGTGTCTGAATGGATGACCAATCTGTGGTATGAGAAGATAACACCTGACAAAGATGCTCCAGAAGAGCTCACAGAAATCATGAATGGACTTCTTGGAGAAATTTGCTTGCGAGCCAAGGATGTGAATCTTATTGACCTTATCACCAGGGATACTGTCCATTTGG
TGAGTGAGCATATAGATCTCTATCGAATAATACAGACCCAGATTGGCGAAGAAAAGTTGAGTAGCTTGTCAAATGATGAAAGAGATGCGAAATTGAAGTTAACTCTAGCAGCAGATAACAAACTTCATCCAGCATTGTTTTCTGCCGAGGCAGAGCGCAAGGTTTTACAGCGTTTTATGGATGGTCTTATGAGTTTAACA
TGTAAACCCGACGACCTGCAATGCAAATTTTTCCGATATATTGCGAGAGAGCTTCTTGCCTGTGCAGTGATGCGTCCAATCATGAACTTAGCGAGTCCCAAGTTCATCAATGAACGAATTGAATCTGCTGTTTTATCTCTCCGAAATAGGAATGGAAAACTAACGAAGGCCTCGGAGCCAGGGACAAAACAGAGTAAATC
CTCAAGATCAAGGTTTACACCTGATCATTTCTCTGGTTTTCTAGATCGCTCTATTGCGGGGGTTGAACTTGTGCAGCTTGGACCTAGCCATGGCAAAAAGTCTGTGGAAATTGATGGGACACAAAATGGAGCTTCCTCTACTTTTCATAATGAACCAAAGTATGCTTACTTTAAGTCATCAGCAGATATCCACCCAAAAA
ATCATATAATGCAATATTACCAACAAGAGGGTGAGACATCTGATATTGTGATTGCAGACAATTGGAAGTCTCAATCTGAAAATGTTGAGGGGATAGAAACACACAATGTTGACAGTAGAATCATCCAGGCACGGCGATCCCCAGGTGGGGAGTGGGGTCAGATGCTTGATATTATCTCAAGGAGAAAGAAACAGGCCCTT
GCTCCTGAGCATTTTGAGAATATGTGGGCAAAAGGGCGTAATTACAAAAAGAAAGAAATTGCAAATAGCTTATCAAAGCCTGTCAATCCTAGGGTATTGTCTGAGGCTTCTGATAAAACAAATCTCAGCAGGAAGCCATTTTATGGACAGCCAGAAAATTCAGGGATAAGTAAGAGCTCTATTCCAGAAAGTTGTCCCAG
TTTTTCTCAACAGATAAAGCAATCTACTGATGACTGCAGTAGAGTAATTGAAGATGCTGGCAGGCTGGAGGAACCTTCACCTGTTCATGAGCATATAAGACATGAAAAATCTTTTAAACAGCACATGGAAATTGTAGAAGAGAGTGGGAGTTCCTATACGAGTGAAGAGGACGAGAGTAGCAGTGTGACAGGGCTTGGTA
CCCCTGGTATTAAGGTATGGGATAGTAAAAGTAATAGAGCTGGTTCTGCATCACATCATCCCTTAGAAAATGATCAAGGTCATCACAAAAAGCAAGGAAACAAAAGTCAGCTCCACTATCGTAGGTTATATAAAACAGCATCAGGTCGGAAAAGGACTAGATCCAAGCGGGGTGTAGATAACTGGCAAGAACTGGAAAGA
ACATCCTTTTATTTGGGAGATGGTCTGGACATATTGAACACTGCTCAGGCAGAGTCTATGAAAACTGAAGATCCAGAGGATGAGAGTGAAAATCAAAGTAGGGTGTCTAGTGGTACCTTGGCTTGTTCATCAGCTGCTGCTGTCTGCAGTTCTGGAACAGCCAATTCATCTGAAATGAAATCTGAGAGCTCTCACTTGGC
TGCAGCTTTACCATCTCAGCAACTGCGATGCAAGgcaagtatgaaactgtctttgacttaatatcttgtacagggtaatggaaattgggctgcagagcaaaggaagacataattttaagttgtcaatagcactgttgagtacaatagaaatcttgttggaggaagactgcatgtcaatgtctttttgtcaatgggactat
tgagtatgaaaggatagaagactacttggtggagtgcaccaggcaccttcaacttaagacatgatgccataaaaaaacagaaagaactaagatgcaaatagccataattggattagttgtgtctgtaaacttaatgcctagcaaggcgtattagctgtttaaaaaaattatgaaagcaatttaaatatgaaagatattca
cggaaattcttttgcagGTATTGGGAGCAAACTTTGTTAAAAGTGATTCCAAAACCATTGCTGTTTATTCTATCTCCGTGACAGATAATGAGAACCGTACATGGTCAATTAAAAGAAG