sp|Q6YUU5|MDR_ORYSJ ----> Putative multidrug resistance protein
Intron 1 GTAAAGATTT ... TGCGTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0 | 4 | 1 | 0 |
| A2 | 25 | 12 | 0 | 4 |
| A3 | 29.41 | 12 | 1 | 5 |
| A4 | 30 | 14 | 0 | 6 |
| A5 | 57.14 | 3 | 2 | 4 |
| A6 | 0 | 2 | 0 | 0 |
| A7 | -1 | 0 | 0 | 0 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | -1 | 0 | 0 | 0 |
| A10 | 33.33 | 2 | 0 | 1 |
>TRINITY_DN96995_c0_g1_i3 from sample A5 / Example spliced isoformGTAGCTGCAATCGATCTGCTAGGAAAGTTTATTGCCCTCATCTCTGTAAGTTGGGCAGCCGCCGCCAATGGCTGCTAGTGTTGATACACACCAGGAGGGGAGTTCAAAGAATACAGAAGGAAACGGCATGTCGATATGGAAGATTTTCAGATATGCCGATTGTGCAGATGTTTTTATGATGGTGTTAGGTACTTTGGGTT
CAATTGCTGATGGATCTCTAGCAGGCGCTGGCGTCTTGATTATCCTGAGTCGATTAATAAATAGTCTCGGATCTGATCCTTCAGCTTCGAAGAATCCTGATTTCATGAATTCAATGAACAAGCAAATAGTGCCTTTTCTGTATTTGGCAGCTGGAGTATGGCTTGCAGCGTTTTTAGAGGGTTTCTGCTGGACAAGAACT
GCAGAAAGACAGGCATCTGTACTGCGCAGAAAGTATTTGAAAGCTGTTCTTAGGCAGGAAGTTGGATTTTTTGATAACAGCCACACACATATTGCTGAGGTGGTTAACAGTGTTTACAACGACACCCTCGTCATACAGGACACCCTTAGTGAAAAGGTTCCCAATTTCGTCATGAATTTGTCAAATTTCTTTGCTTCCTA
TGCGGCCAGTTTCTATTTGTCATGGAGCTTGGCGTTGGTGACATTACCCCTATCTAGTTTACTGGTAATAGGAGGATTGCTCTACGGTCGAACTCTCATAAAGATAGCGAAAAAGATGCTCGCAGAATATAATCAGTCTAGTATAATTGCAGAGCAAGCGGTTTCTTCTATTAGAACCGTCTATTCTTTCGTTGGAGAAG
CAAAGGCTTTGGCCAAATTTTCATCCGCACTTGATGCAGCAGTTAAACTTGGGCTTAAACAAGGACTGGCAAAAGGAATTGCCATAGGTGGTAATGGAGCAGTAAGTTTTGCCTTGTGGGCTTTCATTTCATGGTATGGAAGCAGATTGGTGATGAATCATAATGTGAGCGGAGGAAAGATTTTTGGTGTAGGCTACTGC
ATAATCCTGGGTGGACTGTCTCTGGCGGCCGCGCTTCCAAATCTCAAATACTTTTCTGAGGCAGGCATTGCGGCTATTCGCATATTTAAGATGATTGATAGAGTACCAGAGATAGATTCAGAGGATGTGAAAGGAAAAGTCTTGAAAAGCGTCTCGGGGGAGGTCGAATTTCGGAACGTTCAATTTGCGTATCCGTCTAG
ACCAGATAGCATGATATTTCACAATTTTTGCCTCACTATTCCTGCACTCGAAACAGTGGCTTTGGTGGGCGGCAGTGGATCTGGAAAATCGACAGCCATTGCATTATTAGAACGGTTCTACGATCCACTTAAAGGAGAAATTCTTCTGGATGGGGAGAATATTAAAGGTTTGCAACTGAAATGGCTGCGTAAACAAATC
>TRINITY_DN96995_c0_g1_i2 from sample A5 / Example unspliced isoform:GGCTTGCAGCGTTTTTAGgtaaagatttttaaactctcagtgaactcactgtttattctttaatctttaacgatataaggtgtctgtgggtttcaagtagagcagtttattgaacattggccttgcgtttcagAGGGTTTCTGCTGGACAAGAACTGCAGAAAGACAGGCATCTGTACTGCGCAGAAAGTATTTGAAAGC
TGTTCTTAGGCAGGAAGTTGGATTTTTTGATAACAGCCACACACATATTGCTGAGGTGGTTAACAGTGTTTACAACGACACCCTCGTCATACAGGACACCCTTAGTGAAAAGGTTCCCAATTTCGTCATGAATTTGTCAAATTTCTTTGCTTCCTATGCGGCCAGTTTCTATTTGTCATGGAGCTTGGCGTTGGTGACAT
TACCCCTATCTAGTTTACTGGTAATAGGAGGATTGCTCTACGGTCGAACTCTCATAAAGATAGCGAAAAAGATGCTCGCAGAATATAATCAGTCTAGTATAATTGCAGAGCAAGCGGTTTCTTCTATTAGAACCGTCTATTCTTTCGTTGGAGAAGCAAAGGCTTTGGCCAAATTTTCATCCGCACTTGATGCAGCAGTT
AAACTTGGGCTTAAACAAGGACTGGCAAAAGGAATTGCCATAGGTGGTAATGGAGCAGTAAGTTTTGCCTTGTGGGCTTTCATTTCATGGTATGGAAGCAGATTGGTGATGAATCATAATGTGAGCGGAGGAAAGATTTTTGGTGTAGGCTACTGCATAATCCTGGGTGGACTGTCTCTGGCGGCCGCGCTTCCAAATCT
CAAATACTTTTCTGAGGCAGGCATTGCGGCTATTCGCATATTTAAGATGATTGATAGAGTACCAGAGATAGATTCAGAGGATGTGAAAGGAAAAGTCTTGAAAAGCGTCTCGGGGGAGGTCGAATTTCGGAACGTTCAATTTGCGTATCCGTCTAGACCAGATAGCATGATATTTCACAATTTTTGCCTCACTATTCCTG
CACTCGAAACAGTGGCTTTGGTGGGCGGCAGTGGATCTGGAAAATCGACAGCCATTGCATTATTAGAACGGTTCTACGATCCACTTAAAGGAGAAATTCTTCTGGATGGGGAGAATATTAAAGGTTTGCAACTGAAATGGCTGCGTAAACAAATC
Intron 2 GTTCTCTTTC ... CTAAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.33 | 23 | 9 | 5 |
| A2 | 29.17 | 17 | 5 | 9 |
| A3 | 30.61 | 17 | 11 | 4 |
| A4 | 12.5 | 7 | 2 | 0 |
| A5 | 20 | 4 | 2 | 0 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 20 | 18 | 8 | 1 |
| A8 | 33.33 | 6 | 2 | 4 |
| A9 | 20 | 2 | 1 | 0 |
| A10 | 23.81 | 8 | 5 | 0 |
>TRINITY_DN114016_c0_g1_i2 from sample A1 / Example spliced isoformAAGGAAATAAAAGTATAAATAGGATCACTCTATAGAGATGAACACAATCGGTAGCTGCAATCGATCTGCTAGGAAAGTTTATTGCCCTCATCTCTGTAAGTTGGGCAGCCGCCGCCAATGGCTGCTAGTGTTGATACACACCAGGAGGGGAGTTCAAAGAATACAGAAGGAAACGGCATGTCGATATGGAAGATTTTCAG
ATATGCCGATTGTGCAGATGTTTTTATGATGGTGTTAGGTACTTTGGGTTCAATTGCTGATGGATCTCTAGCAGGCGCTGGCGTCTTGATTATCCTGAGTCGATTAATAAATAGTCTCGGATCTGATCCTTCAGCTTCGAAGAATCCTGATTTCATGAATTCAATGAACAAGCAAATAGTGCCTTTTCTGTATTTGGCAG
CTGGAGTATGGCTTGCAGCGTTTTTAGAGGGTTTCTGCTGGACAAGAACTGCAGAAAGACAGGCATCTGTACTGCGCAGAAAGTATTTGAAAGCTGTTCTTAGGCAGGAAGTTGGATTTTTTGATAACAGCCACACACATATTGCTGAGGTGGTTAACAGTGTTTACAACGACACCCTCGTCATACAGGACACCCTTAGT
GAAAAGGTTCCCAATTTCGTCATGAATTTGTCAAATTTCTTTGCTTCCTATGCGGCCAGTTTCTATTTGTCATGGAGCTTGGCGTTGGTGACATTACCCCTATCTAGTTTACTGGTAATAGGAGGATTGCTCTACGGTCGAACTCTCATAAAGATAGCGAAAAAGATGCTCGCAGAATATAATCAGTCTAGTATAATTGC
AGAGCAAGCGGTTTCTTCTATTAGAACCGTCTATTCATTCGTTGGAGAAGCAAAGGCTTTGGCCAAATTTTCATCCGCACTTGATGCAGCAGTTAAACTTGGGCTTAAACAAGGACTGGCAAAAGGAATTGCCATAGGTGGTAATGGAGCAGTAAGTTTTGCCTTGTGGGCTTTCATTTCATGGTATGGAAGCAGATTGG
TGATGAATCATAATGTGAGCGGAGGAAAGATTTTTGGTGTAGGCTACTGCATAATCCTGGGTGGACTGTCTCTGGCGGCCGCGCTTCCAAATCTCAAATACTTTTCTGAGGCAGGCATTGCGGCTATTCGCATATTTAAGATGATTGATAGAGTACCAGAGATAGATTCAGAGGATGTGAAAGGAAAAGTCTTGAAAAGC
GTCTCGGGGGAGGTCGAATTTCGGAACGTTCAATTTGCGTATCCGTCTAGACCAGATAGCATGATATTTCACAATTTTTGCCTCACTATTCCTGCACTCGAAACAGTGGCTTTGGTGGGCGGCAGTGGATCTGGAAAATCGACAGCCATTGCATTATTAGAACGGTTCTACGATCCACTTAAAGGAGAAATTCTTCTGGA
TGGGGAGAATATTAAAGGTTTGCAACTGAAATGGCTGCGTAAACAAATCGGCCTAGTTAGTCAGGAGCCTGCTCTGTTCGCCTCTTCCATTCGGGAGAATATTTTGTTTGGAAAGGATGACGCGACAATGGATGAAATCATCAATGTTGCAAAAGCTTCCAACGCCCACAACTTCATTAGCCAACTCCCAAACGGCTATG
ACACACAGGTAGGAGAAAGTGGCGTGCAGATGTCCGGAGGACAAAAGCAGAGAATAGCCATAGCTAGAGCGATGCTGAAAAACCCTTCCATTCTGCTTTTAGATGAGGCCACCAGTGCTTTAGACGCAGAATCAGAAAAGATTGTTCAAGATGCACTTGGTAAGGCTTCTATTGGGCGCACAACGGTGGTTGTGGCTCAT
CGTCTCTCCACAATTCAGGGAGCTCATAAAATTGCGGTGATGCAAAATGGTCAAGTCATCGAAATCGGTGGACACCAAGAACTGATCAATAACCCAAATGGGGCATATACCGCTTTGCTGAAAATACAGGAGAAGGCCCCGTTACATGATACTATTGCTCTTAACGCTTCATCAAATGCTTTAATTTCACCCAGAATAAG
TATCCAAAGCCCAGGAAGCAAATCACCAGCTACTCCAAATCAAATTGGTAGTTCCTTATCCGGCCTGGAAGAAGGAGAAAATAAAGCCAATGCTGAGTCCAGATCTTCCTTCTGTAGGTTGCTTTCATTGAATGCTCCAGAGTGGAAGCATACTCTGATGGGCTGTATAGGCGCATTTGGATATGCGGCAACTCAAATAG
CGTATTCCGTCACTGTAGCAAGCATGATTACTGCGCTCTTTCTAAAAGACAAAGACCAGATCAGATCTAAAGTCGGAATTTATTGCATTCTTTTTATAGCCCTCGCAGTGCATGTATTTGCAGTGAATTTGGTTCAGCATTATAACTTCGCAGTGGTAGGCGAGTTTCTAGCAAAAAGGATCCGCCAAAGAATGCTTTCA
AAAATTCTTACATTCGAAGTGGGCTGGTTCGATCTCGACCAAAATTCCAGTGGAGCTATTTGCTCAAAACTGGCCAAGGAAGCTAATGTGGTGAGATCCTTGGTAGGGGATCGTGTTTCTCTTCTAGTGGAGTGTCTCTCTGGAGTAATTATAACTGTGACTCTAGGAATGTTGGTAGCATGGCGACTTGCTATTGTGTT
GATTGCTATTCAGCCGCTGATGGTGCTCTGCTTCTACACTCGAAACGTTCTCCTTAAAAGCATTTCGGGTAAGTCTATTAAAGCGCAGAATCAAGGCAGCCAAGTGGCCTTCGAATGTGTCACGCATCATAGAACCATAGCGGCCTTTTGCTCTCAAGAAAAAATTATTCGTTTTTTTGAATCCACACAGGCAGGCCCAG
GGAGGGAGAACAAGAAACAGTCATGGTACGCAGGATTGGCTCTGGGAACTTCAAAGTTCCTTGAAATATGTTATTGGCCTTTTGAGTTTTGGTATGGAGGGAGGCTTATAGCGCACGGCCTTATCAGTTTCCATGCTTTTTTATTGAACCATTTTATTTTTGGAAGGTTGGGCCGAATGATAGCCGATGCTGGAAGCATG
ACTTCGGACCTGGCCAAAGGATCTGATGCTGTCACGTCTGTGTTTGAAATTTTGGACAGAAATAGCCTTATAAATCCGGAGGACCCTAATGGGGTTAACCCTGAGAAAGTCCAAGGCACTGTAGCGCTGAGGAGTGTGGACTTCGCTTATCCAGCTCGTCCAGATGCCATGATCTTGAGAAATTTCTCCCTTAAAATCAA
TGCAGGGAGCAGCGTAGCACTAGTGGGAAAGAGCGGGTGTGGTAAGTCTACCATCATCGGACTGATAGAGAGATTCTACGATCCGCTGAAAGGGAAGGTACTCATAGATGGCAAAGACATAAGGAGCTTCAATTTGCGATCTCTGAGAGAACACATAGCTCTTGTAGGGCAGGAGCCAACTCTTTTTTCTGGGAGCATCA
GGGAGAACATTGCGTATGGTAAAGAGAACGCAACTGAGGCGGAGATAATAGAGGCTGCCAAGGCTGCCAATGCCCATGAATTCATTTCGTGCTTGAAGGATGGATATGAAACCAACGCAGGGAGCAGGGGAACGCAGTTGTCTGGGGGACAGAAGCAAAGAATAGCGATAGCGAGGGCAATTATAAAGAATCCAAGTATC
TTGCTATTGGACGAGGCAACCAGTGCATTGGATGCTCATTCCGAGAGGGTGGTTCAAGAGGCAATAGATCGAGTAACAGTGGGAAGAACGACAGTGGCTGTAGCTCATCGATTGACCTCTATTCAGAATTCGGACTGCATAGCAGTTGTTGAGAAAGGCAGCGTTGTTGAGCAGGGAAATCACGCCCAGCTCCTGGCTAA
AGGCGAAGGCGGAGCATATTTTGGTCTCATTCAACTGCAGCAACGGCATTAGGTAATCATAATCATATTCATATTAATATTTCTTCAAATGGTATGAGACCGAAGCTGTAAAGTTAGGCAATCGGTTGAGTGCTCATCACGATTCTGTAAATGGTCTGATGATGCGAAGGTCTCATTATTCATGGCTGGGCTGCCACATT
GACAACCACATGAATCTCTGTACCAGGCATTAATTATAACGGATGGGTTGTCTAAATATATGAAATTTCCGTATTTCTCCCGATTGGTTTGTTGAAGCATCTACCATGTCTTTACTTTTCAATTATGTCAACCTACCCTTCAACCCCCCATTTATTTTCATTTCTTTTAATGGTTTTCTATTATCGACCCCGTACTAATA
ATTGTTATTTTCCTTATTTATCC
>TRINITY_DN114016_c0_g1_i5 from sample A1 / Example unspliced isoform:AAGGAAATAAAAGTATAAATAGGATCACTCTATAGAGATGAACACAATCGGTAGCTGCAATCGATCTGCTAGGAAAGTTTATTGCCCTCATCTCTGTAAGTTGGGCAGCCGCCGCCAATGGCTGCTAGTGTTGATACACACCAGGAGGGGAGTTCAAAGAATACAGAAGGAAACGGCATGTCGATATGGAAGATTTTCAG
ATATGCCGATTGTGCAGATGTTTTTATGATGGTGTTAGGTACTTTGGGTTCAATTGCTGATGGATCTCTAGCAGGCGCTGGCGTCTTGATTATCCTGAGTCGATTAATAAATAGTCTCGGATCTGATCCTTCAGCTTCGAAGAATCCTGATTTCATGAATTCAATGAACAAGCAAATAGTGCCTTTTCTGTATTTGGCAG
CTGGAGTATGGCTTGCAGCGTTTTTAGAGGGTTTCTGCTGGACAAGAACTGCAGAAAGACAGGCATCTGTACTGCGCAGAAAGTATTTGAAAGCTGTTCTTAGGCAGGAAGTTGGATTTTTTGATAACAGCCACACACATATTGCTGAGGTGGTTAACAGTGTTTACAACGACACCCTCGTCATACAGGACACCCTTAGT
GAAAAGGTTCCCAATTTCGTCATGAATTTGTCAAATTTCTTTGCTTCCTATGCGGCCAGTTTCTATTTGTCATGGAGCTTGGCGTTGGTGACATTACCCCTATCTAGTTTACTGGTAATAGGAGGATTGCTCTACGGTCGAACTCTCATAAAGATAGCGAAAAAGATGCTCGCAGAATATAATCAGTCTAGTATAATTGC
AGAGCAAGCGGTTTCTTCTATTAGAACCGTCTATTCATTCGTTGGAGAAGCAAAGGCTTTGGCCAAATTTTCATCCGCACTTGATGCAGCAGTTAAACTTGGGCTTAAACAAGGACTGGCAAAAGGAATTGCCATAGGTGGTAATGGAGCAGTAAGTTTTGCCTTGTGGGCTTTCATTTCATGGTATGGAAGCAGATTGG
TGATGAATCATAATGTGAGCGGAGGAAAGATTTTTGGTGTAGGCTACTGCATAATCCTGGGTGGACTGTCTCTGGCGGCCGCGCTTCCAAATCTCAAATACTTTTCTGAGGCAGGCATTGCGGCTATTCGCATATTTAAGATGATTGATAGAGTACCAGAGATAGATTCAGAGGATGTGAAAGGAAAAGTCTTGAAAAGC
GTCTCGGGGGAGGTCGAATTTCGGAACGTTCAATTTGCGTATCCGTCTAGACCAGATAGCATGATATTTCACAATTTTTGCCTCACTATTCCTGCACTCGAAACAGTGGCTTTGGTGGGCGGCAGTGGATCTGGAAAATCGACAGCCATTGCATTATTAGAACGGTTCTACGATCCACTTAAAGGAGAAATTCTTCTGGA
TGGGGAGAATATTAAAGGTTTGCAACTGAAATGGCTGCGTAAACAAATCGGCCTAGTTAGTCAGGAGCCTGCTCTGTTCGCCTCTTCCATTCGGGAGAATATTTTGTTTGGAAAGGATGACGCGACAATGGATGAAATCATCAATGTTGCAAAAGCTTCCAACGCCCACAACTTCATTAGCCAACTCCCAAACGGCTATG
ACACACAGgttctctttcagggtttgtaaaaacacaattcataagcatagttctactttgtcaattaaaatagcaagtattcatttcaagatctttctaaatgcagGTAGGAGAAAGTGGCGTGCAGATGTCCGGAGGACAAAAGCAGAGAATAGCCATAGCTAGAGCGATGCTGAAAAACCCTTCCATTCTGCTTTTAG
ATGAGGCCACCAGTGCTTTAGACGCAGAATCAGAAAAGATTGTTCAAGATGCACTTGGTAAGGCTTCTATTGGGCGCACAACGGTGGTTGTGGCTCATCGTCTCTCCACAATTCAGGGAGCTCATAAAATTGCGGTGATGCAAAATGGTCAAGTCATCGAAATCGGTGGACACCAAGAACTGATCAATAACCCAAATGGG
GCATATACCGCTTTGCTGAAAATACAGGAGAAGGCCCCGTTACATGATACTATTGCTCTTAACGCTTCATCAAATGCTTTAATTTCACCCAGAATAAGTATCCAAAGCCCAGGAAGCAAATCACCAGCTACTCCAAATCAAATTGGTAGTTCCTTATCCGGCCTGGAAGAAGGAGAAAATAAAGCCAATGCTGAGTCCAG
ATCTTCCTTCTGTAGGTTGCTTTCATTGAATGCTCCAGAGTGGAAGCATACTCTGATGGGCTGTATAGGCGCATTTGGATATGCGGCAACTCAAATAGCGTATTCCGTCACTGTAGCAAGCATGATTACTGCGCTCTTTCTAAAAGACAAAGACCAGATCAGATCTAAAGTCGGAATTTATTGCATTCTTTTTATAGCCC
TCGCAGTGCATGTATTTGCAGTGAATTTGGTTCAGCATTATAACTTCGCAGTGGTAGGCGAGTTTCTAGCAAAAAGGATCCGCCAAAGAATGCTTTCAAAAATTCTTACATTCGAAGTGGGCTGGTTCGATCTCGACCAAAATTCCAGTGGAGCTATTTGCTCAAAACTGGCCAAGGAAGCTAATGTGGTGAGATCCTTG
GTAGGGGATCGTGTTTCTCTTCTAGTGGAGTGTCTCTCTGGAGTAATTATAACTGTGACTCTAGGAATGTTGGTAGCATGGCGACTTGCTATTGTGTTGATTGCTATTCAGCCGCTGATGGTGCTCTGCTTCTACACTCGAAACGTTCTCCTTAAAAGCATTTCGGGTAAGTCTATTAAAGCGCAGAATCAAGGCAGCCA
AGTGGCCTTCGAATGTGTCACGCATCATAGAACCATAGCGGCCTTTTGCTCTCAAGAAAAAATTATTCGTTTTTTTGAATCCACACAGGCAGGCCCAGGGAGGGAGAACAAGAAACAGTCATGGTACGCAGGATTGGCTCTGGGAACTTCAAAGTTCCTTGAAATATGTTATTGGCCTTTTGAGTTTTGGTATGGAGGGA
GGCTTATAGCGCACGGCCTTATCAGTTTCCATGCTTTTTTATTGAACCATTTTATTTTTGGAAGGTTGGGCCGAATGATAGCCGATGCTGGAAGCATGACTTCGGACCTGGCCAAAGGATCTGATGCTGTCACGTCTGTGTTTGAAATTTTGGACAGAAATAGCCTTATAAATCCGGAGGACCCTAATGGGGTTAACCCT
GAGAAAGTCCAAGGCACTGTAGCGCTGAGGAGTGTGGACTTCGCTTATCCAGCTCGTCCAGATGCCATGATCTTGAGAAATTTCTCCCTTAAAATCAATGCAGGGAGCAGCGTAGCACTAGTGGGAAAGAGCGGGTGTGGTAAGTCTACCATCATCGGACTGATAGAGAGATTCTACGATCCGCTGAAAGGGAAGGTACT
CATAGATGGCAAAGACATAAGGAGCTTCAATTTGCGATCTCTGAGAGAACACATAGCTCTTGTAGGGCAGGAGCCAACTCTTTTTTCTGGGAGCATCAGGGAGAACATTGCGTATGGTAAAGAGAACGCAACTGAGGCGGAGATAATAGAGGCTGCCAAGGCTGCCAATGCCCATGAATTCATTTCGTGCTTGAAGGATG
GATATGAAACCAACGCAGGGAGCAGGGGAACGCAGTTGTCTGGGGGACAGAAGCAAAGAATAGCGATAGCGAGGGCAATTATAAAGAATCCAAGTATCTTGCTATTGGACGAGGCAACCAGTGCATTGGATGCTCATTCCGAGAGGGTGGTTCAAGAGGCAATAGATCGAGTAACAGTGGGAAGAACGACAGTGGCTGTA
GCTCATCGATTGACCTCTATTCAGAATTCGGACTGCATAGCAGTTGTTGAGAAAGGCAGCGTTGTTGAGCAGGGAAATCACGCCCAGCTCCTGGCTAAAGGCGAAGGCGGAGCATATTTTGGTCTCATTCAACTGCAGCAACGGCATTAGGTAATCATAATCATATTCATATTAATATTTCTTCAAATGGTATGAGACCG
AAGCTGTAAAGTTAGGCAATCGGTTGAGTGCTCATCACGATTCTGTAAATGGTCTGATGATGCGAAGGTCTCATTATTCATGGCTGGGCTGCCACATTGACAACCACATGAATCTCTGTACCAGGCATTAATTATAACGGATGGGTTGTCTAAATATATGAAATTTCCGTATTTCTCCCGATTGGTTTGTTGAAGCATCT
ACCATGTCTTTACTTTTCAATTATGTCAACCTACCCTTCAACCCCCCATTTATTTTCATTTCTTTTAATGGTTTTCTATTATCGACCCCGTACTAATAATTGTTATTTTCCTTATTTATCC
Intron 3 GTAAGTTTTC ... TCAAATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.18 | 5 | 5 | 2 |
| A2 | 37.5 | 10 | 8 | 4 |
| A3 | 16.67 | 5 | 1 | 1 |
| A4 | 20.93 | 17 | 7 | 2 |
| A5 | 5.88 | 8 | 1 | 0 |
| A6 | 33.33 | 1 | 1 | 0 |
| A7 | 11.11 | 4 | 1 | 0 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 0 | 2 | 0 | 0 |
| A10 | -1 | 0 | 0 | 0 |
>TRINITY_DN114016_c0_g1_i2 from sample A1 / Example spliced isoformAAGGAAATAAAAGTATAAATAGGATCACTCTATAGAGATGAACACAATCGGTAGCTGCAATCGATCTGCTAGGAAAGTTTATTGCCCTCATCTCTGTAAGTTGGGCAGCCGCCGCCAATGGCTGCTAGTGTTGATACACACCAGGAGGGGAGTTCAAAGAATACAGAAGGAAACGGCATGTCGATATGGAAGATTTTCAG
ATATGCCGATTGTGCAGATGTTTTTATGATGGTGTTAGGTACTTTGGGTTCAATTGCTGATGGATCTCTAGCAGGCGCTGGCGTCTTGATTATCCTGAGTCGATTAATAAATAGTCTCGGATCTGATCCTTCAGCTTCGAAGAATCCTGATTTCATGAATTCAATGAACAAGCAAATAGTGCCTTTTCTGTATTTGGCAG
CTGGAGTATGGCTTGCAGCGTTTTTAGAGGGTTTCTGCTGGACAAGAACTGCAGAAAGACAGGCATCTGTACTGCGCAGAAAGTATTTGAAAGCTGTTCTTAGGCAGGAAGTTGGATTTTTTGATAACAGCCACACACATATTGCTGAGGTGGTTAACAGTGTTTACAACGACACCCTCGTCATACAGGACACCCTTAGT
GAAAAGGTTCCCAATTTCGTCATGAATTTGTCAAATTTCTTTGCTTCCTATGCGGCCAGTTTCTATTTGTCATGGAGCTTGGCGTTGGTGACATTACCCCTATCTAGTTTACTGGTAATAGGAGGATTGCTCTACGGTCGAACTCTCATAAAGATAGCGAAAAAGATGCTCGCAGAATATAATCAGTCTAGTATAATTGC
AGAGCAAGCGGTTTCTTCTATTAGAACCGTCTATTCATTCGTTGGAGAAGCAAAGGCTTTGGCCAAATTTTCATCCGCACTTGATGCAGCAGTTAAACTTGGGCTTAAACAAGGACTGGCAAAAGGAATTGCCATAGGTGGTAATGGAGCAGTAAGTTTTGCCTTGTGGGCTTTCATTTCATGGTATGGAAGCAGATTGG
TGATGAATCATAATGTGAGCGGAGGAAAGATTTTTGGTGTAGGCTACTGCATAATCCTGGGTGGACTGTCTCTGGCGGCCGCGCTTCCAAATCTCAAATACTTTTCTGAGGCAGGCATTGCGGCTATTCGCATATTTAAGATGATTGATAGAGTACCAGAGATAGATTCAGAGGATGTGAAAGGAAAAGTCTTGAAAAGC
GTCTCGGGGGAGGTCGAATTTCGGAACGTTCAATTTGCGTATCCGTCTAGACCAGATAGCATGATATTTCACAATTTTTGCCTCACTATTCCTGCACTCGAAACAGTGGCTTTGGTGGGCGGCAGTGGATCTGGAAAATCGACAGCCATTGCATTATTAGAACGGTTCTACGATCCACTTAAAGGAGAAATTCTTCTGGA
TGGGGAGAATATTAAAGGTTTGCAACTGAAATGGCTGCGTAAACAAATCGGCCTAGTTAGTCAGGAGCCTGCTCTGTTCGCCTCTTCCATTCGGGAGAATATTTTGTTTGGAAAGGATGACGCGACAATGGATGAAATCATCAATGTTGCAAAAGCTTCCAACGCCCACAACTTCATTAGCCAACTCCCAAACGGCTATG
ACACACAGGTAGGAGAAAGTGGCGTGCAGATGTCCGGAGGACAAAAGCAGAGAATAGCCATAGCTAGAGCGATGCTGAAAAACCCTTCCATTCTGCTTTTAGATGAGGCCACCAGTGCTTTAGACGCAGAATCAGAAAAGATTGTTCAAGATGCACTTGGTAAGGCTTCTATTGGGCGCACAACGGTGGTTGTGGCTCAT
CGTCTCTCCACAATTCAGGGAGCTCATAAAATTGCGGTGATGCAAAATGGTCAAGTCATCGAAATCGGTGGACACCAAGAACTGATCAATAACCCAAATGGGGCATATACCGCTTTGCTGAAAATACAGGAGAAGGCCCCGTTACATGATACTATTGCTCTTAACGCTTCATCAAATGCTTTAATTTCACCCAGAATAAG
TATCCAAAGCCCAGGAAGCAAATCACCAGCTACTCCAAATCAAATTGGTAGTTCCTTATCCGGCCTGGAAGAAGGAGAAAATAAAGCCAATGCTGAGTCCAGATCTTCCTTCTGTAGGTTGCTTTCATTGAATGCTCCAGAGTGGAAGCATACTCTGATGGGCTGTATAGGCGCATTTGGATATGCGGCAACTCAAATAG
CGTATTCCGTCACTGTAGCAAGCATGATTACTGCGCTCTTTCTAAAAGACAAAGACCAGATCAGATCTAAAGTCGGAATTTATTGCATTCTTTTTATAGCCCTCGCAGTGCATGTATTTGCAGTGAATTTGGTTCAGCATTATAACTTCGCAGTGGTAGGCGAGTTTCTAGCAAAAAGGATCCGCCAAAGAATGCTTTCA
AAAATTCTTACATTCGAAGTGGGCTGGTTCGATCTCGACCAAAATTCCAGTGGAGCTATTTGCTCAAAACTGGCCAAGGAAGCTAATGTGGTGAGATCCTTGGTAGGGGATCGTGTTTCTCTTCTAGTGGAGTGTCTCTCTGGAGTAATTATAACTGTGACTCTAGGAATGTTGGTAGCATGGCGACTTGCTATTGTGTT
GATTGCTATTCAGCCGCTGATGGTGCTCTGCTTCTACACTCGAAACGTTCTCCTTAAAAGCATTTCGGGTAAGTCTATTAAAGCGCAGAATCAAGGCAGCCAAGTGGCCTTCGAATGTGTCACGCATCATAGAACCATAGCGGCCTTTTGCTCTCAAGAAAAAATTATTCGTTTTTTTGAATCCACACAGGCAGGCCCAG
GGAGGGAGAACAAGAAACAGTCATGGTACGCAGGATTGGCTCTGGGAACTTCAAAGTTCCTTGAAATATGTTATTGGCCTTTTGAGTTTTGGTATGGAGGGAGGCTTATAGCGCACGGCCTTATCAGTTTCCATGCTTTTTTATTGAACCATTTTATTTTTGGAAGGTTGGGCCGAATGATAGCCGATGCTGGAAGCATG
ACTTCGGACCTGGCCAAAGGATCTGATGCTGTCACGTCTGTGTTTGAAATTTTGGACAGAAATAGCCTTATAAATCCGGAGGACCCTAATGGGGTTAACCCTGAGAAAGTCCAAGGCACTGTAGCGCTGAGGAGTGTGGACTTCGCTTATCCAGCTCGTCCAGATGCCATGATCTTGAGAAATTTCTCCCTTAAAATCAA
TGCAGGGAGCAGCGTAGCACTAGTGGGAAAGAGCGGGTGTGGTAAGTCTACCATCATCGGACTGATAGAGAGATTCTACGATCCGCTGAAAGGGAAGGTACTCATAGATGGCAAAGACATAAGGAGCTTCAATTTGCGATCTCTGAGAGAACACATAGCTCTTGTAGGGCAGGAGCCAACTCTTTTTTCTGGGAGCATCA
GGGAGAACATTGCGTATGGTAAAGAGAACGCAACTGAGGCGGAGATAATAGAGGCTGCCAAGGCTGCCAATGCCCATGAATTCATTTCGTGCTTGAAGGATGGATATGAAACCAACGCAGGGAGCAGGGGAACGCAGTTGTCTGGGGGACAGAAGCAAAGAATAGCGATAGCGAGGGCAATTATAAAGAATCCAAGTATC
TTGCTATTGGACGAGGCAACCAGTGCATTGGATGCTCATTCCGAGAGGGTGGTTCAAGAGGCAATAGATCGAGTAACAGTGGGAAGAACGACAGTGGCTGTAGCTCATCGATTGACCTCTATTCAGAATTCGGACTGCATAGCAGTTGTTGAGAAAGGCAGCGTTGTTGAGCAGGGAAATCACGCCCAGCTCCTGGCTAA
AGGCGAAGGCGGAGCATATTTTGGTCTCATTCAACTGCAGCAACGGCATTAGGTAATCATAATCATATTCATATTAATATTTCTTCAAATGGTATGAGACCGAAGCTGTAAAGTTAGGCAATCGGTTGAGTGCTCATCACGATTCTGTAAATGGTCTGATGATGCGAAGGTCTCATTATTCATGGCTGGGCTGCCACATT
GACAACCACATGAATCTCTGTACCAGGCATTAATTATAACGGATGGGTTGTCTAAATATATGAAATTTCCGTATTTCTCCCGATTGGTTTGTTGAAGCATCTACCATGTCTTTACTTTTCAATTATGTCAACCTACCCTTCAACCCCCCATTTATTTTCATTTCTTTTAATGGTTTTCTATTATCGACCCCGTACTAATA
ATTGTTATTTTCCTTATTTATCC
>TRINITY_DN114016_c0_g1_i1 from sample A1 / Example unspliced isoform:AAGGAAATAAAAGTATAAATAGGATCACTCTATAGAGATGAACACAATCGGTAGCTGCAATCGATCTGCTAGGAAAGTTTATTGCCCTCATCTCTGTAAGTTGGGCAGCCGCCGCCAATGGCTGCTAGTGTTGATACACACCAGGAGGGGAGTTCAAAGAATACAGAAGGAAACGGCATGTCGATATGGAAGATTTTCAG
ATATGCCGATTGTGCAGATGTTTTTATGATGGTGTTAGGTACTTTGGGTTCAATTGCTGATGGATCTCTAGCAGGCGCTGGCGTCTTGATTATCCTGAGTCGATTAATAAATAGTCTCGGATCTGATCCTTCAGCTTCGAAGAATCCTGATTTCATGAATTCAATGAACAAGCAAATAGTGCCTTTTCTGTATTTGGCAG
CTGGAGTATGGCTTGCAGCGTTTTTAGAGGGTTTCTGCTGGACAAGAACTGCAGAAAGACAGGCATCTGTACTGCGCAGAAAGTATTTGAAAGCTGTTCTTAGGCAGGAAGTTGGATTTTTTGATAACAGCCACACACATATTGCTGAGGTGGTTAACAGTGTTTACAACGACACCCTCGTCATACAGGACACCCTTAGT
GAAAAGGTTCCCAATTTCGTCATGAATTTGTCAAATTTCTTTGCTTCCTATGCGGCCAGTTTCTATTTGTCATGGAGCTTGGCGTTGGTGACATTACCCCTATCTAGTTTACTGGTAATAGGAGGATTGCTCTACGGTCGAACTCTCATAAAGATAGCGAAAAAGATGCTCGCAGAATATAATCAGTCTAGTATAATTGC
AGAGCAAGCGGTTTCTTCTATTAGAACCGTCTATTCATTCGTTGGAGAAGCAAAGGCTTTGGCCAAATTTTCATCCGCACTTGATGCAGCAGTTAAACTTGGGCTTAAACAAGGACTGGCAAAAGGAATTGCCATAGGTGGTAATGGAGCAGTAAGTTTTGCCTTGTGGGCTTTCATTTCATGGTATGGAAGCAGATTGG
TGATGAATCATAATGTGAGCGGAGGAAAGATTTTTGGTGTAGGCTACTGCATAATCCTGGGTGGACTgtaagttttcctcactttctttaattattgaaattttctatgtccctcgtttgtctggaaaacatactaatttatgtcaaattcagGTCTCTGGCGGCCGCGCT