sp|D3U717|AROD3_PETHY ----> Arogenate dehydratase 3

Intron 1 GTTTGTAATT ... CATCATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	50.37	9.4	12	5.9
A2	48.29	8.5	5	10
A3	49.78	20.3	17	21.4
A4	61.6	6.1	11	6.1
A5	46.12	11	9	8.8
A6	48.84	27.8	16	33.5
A7	43.27	38.6	17	38.3
A8	47.94	36.6	31	33.9
A9	38.91	40.5	10	38.4
A10	42.66	27.5	11	26.5

>TRINITY_DN115242_c0_g1_i4 from sample A3 / Example spliced isoform

AGTGTCCAAGCTTACAAGCGAGAAAACAGGAAGATAATGTCTAATAAACCTCGTCAATTGAGGTGAAACACTCAAATAATTAAGATTTTGTCATAACCGAGGGGCTGTGGAACTTGGGAGCGTCGCAGATATCGAATTTGGGACCAAAGAATGGCCTCCAAACTCTGCCCATCGTCTCCCGCTCTGGGTTTCTCCAACTC
CTCACTGCTGCCCAAATCGCGTCAATTGACAGAAACAACACTTCCCACGCCCACCACGAAACTATGTAGAAATCGGGCACGACGGGCATCACTTCATCACTCAGGAAGCGAATGGCGAATTCCCCGTGCGATGTCATCGGCCCAATCCGCGACCCAGAAACAGGGCGAGAATCAGAATGGGAGTGTTAGCCTGGAGGCGG
GGACAGTTCCCAAGGACTTGGTTTCTCTGCCCAGTTCGTGTTTTCATGTCTCCATGCAAAAAAAATCATACTCAGGCCTCTGTCTGTGACGGATCTAGCTACACCACCCAGCCATGGTTCTCAGGTTCGTGTGGCGTATCAGGGAGTTCCTGG

>TRINITY_DN115242_c0_g1_i5 from sample A3 / Example unspliced isoform:

AGTGTCCAAGCTTACAAGCGAGAAAACAGGAAGATAATGTCTAATAAACCTCGTCAATTGAGGTGAAACACTCAAATAATTAAGATTTTGTCATAACCGAGGGGCTGTGGAACTTGGGAGCGTCGCAGATATCGAATTTGGGACCAAAGAATGGCCTCCAAACTCTGCCCATCGTCTCCCGCTCTGGGTTTCTCCAACTC
CTCACTGCTGCCCAAATCGCGTCAATTGACAGAAACAACACTTCCCACGCCCACCACGAAACTATGTAGAAATCGGGCACGACGGGCATCACTTCATCACTCAGGAAGCGAATGGCGAATTCCCCGTGCGATGTCATCGGCCCAATCCGCGACCCAGAAACAGGGCGAGAATCAGAATGGGAGTGTTAGCCTGGAGGCGG
GGACAGTTCCCAAGGACTTGGTTTCTCTGCCCAGTTCGTGTTTTCATGTCTCCATGCAAAAAAAATCATACTCAgtttgtaattcgtccgagaaatggtatcatttttatcttccatttttttcccttcaagtcacataaattgtcggttcatcatgcagGGCCTCTGTCTGTGACGGATCTAGCTACACCACCCAGCCA
TGGTTCTCAGGTTCGTGTGGCGTATCAGGGAGTTCCTGGCGCATACAGTGAGGCTGCAGCATTGAAAGCTTATCCACAGTGCGAGGCAGTTCCTTGCGAACAATTTGAAGCGGCATTCCAGGCAGTTGAACTGTGGCTTGTTGATAAAGCAGTTTTGCCTATTGAAAATTCACTCGGAGGCAGCATTCACCGTAATTATG
ATTTACTTCTTCGCCACCGCTTGCATATAGTAGGTGAAGTGCAGCTTGCAGTTCATCACTGCCTTTTGGGTCTTCCTGGTGTGAATAAGGAAGAGCTAAAGCGTGTTGTAAGCCATCCCCAGGCTCTCTCCCAATGTGAGCACACATTGAGCACTTTGGGGGTTATACGTGAAGCAGTAGATGATACGGCTGGGGCTGCC
CAGTTTATAGCTGCTAATAATCTTCGAGACACAGGGGCTGTTGCAAGTGCCCGAGCTGCTGAGATTTATGGTCTACAGATTCTTGCGGATGGAATTCAGGATGATTCAGACAATGTTACTCGGTTCTTAATGTTGGCAAGGGAGCCCATCATTCCAAGAATTGACAGACCATTCAAGACGAGCATTGTTTTCACTCTCGA
GGAGGGACCTGGAGTTCTTTTTAAGGCACTTGCAGTGTTTGCTCTAAGAGATATCAATCTAACGAAGATAGAGAGTAGACCTCAGAGAAAGCGGCCATTGCGGGTAGTTGATGATAGTAATACTGGTGCTGCAAAGTATTTTGACTATCTCTTCTACATTGACTTTGAAGCTTCCATGGCTGATCCACGAGCACAAAATG
CCTTAGGTCACCTTCAGGAATTTGCGACATTTATGCGTGTTTTGGGAAGCTATCCTATGGACATGACCCCCATGGGTCGATTATAAGCCTTATCTGATAAAAACTTATATTATTTGATGTACACTTATATAAGAAGTGGTTTGTTCATGAGCAAAGATTTTCTGTAGATAAATCTTTTCCTGCTTTGAGCATAGCGAAAC
AAATATTCCAGCTCCCAGTATTTATCTTCTGCATGGGATTTGTTTGAGAAGATGGGATTCGAGAGGGTGTAACACTACTTATTTAACATTTTTTGACAATTTGTCCAAATTTCTGTTTGTCTTACCTCAAGGCACTTTTTAGTGACATACAACCACTTGCTGATATTTTGAAAATATGTAGATACATACATATGTTCAGC
TTTTGGAGCTGCATTCCCCTGTTACTGTACTTGTGAGTAAAGTTAAGATTTCTAGCCTCCTGATACCAAAGTAAACAATAATAATTGGATCAAAAGATTGATAGTGTATTGTATTGAATTGTTAGTACTGTATTCCATGAAATTCTTTTCCAGCCTCAATAAGGTTGTTCTGTAAGTGCAGGCACATGCACCATACAAAA
TTTACAGAGAAAGGGCTGGCTTTGTATTGTATCAAATCATGTAATTAGAATTGTTGAAATTGCATTTAAGCTGGGAAATCAACCTTGGTAACTCTATCTGCTTTTGAAGTATTATTATGCCTGGTCTACCACGGGTATGTTTGGAAGTTGCCATCATAAGTAACATTAGGAACATACTCGTCCTGGTGATGCCTTTTTGA
GAAGACATACAATGCAGTCAAATCTACTTGTAACAGAAATCTTTAAAATAGATTGGTGTGAAGCTGAATTGAAGTTGATGATAGATGCTTTTATACTCCATATTTGAAACAACC

Intron 2 GTGAGTAATG ... GTAAGTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	29.14	22	13	5.3
A2	43.63	6	6	3.3
A3	48.27	10	15	3.7
A4	48.15	7	13	0
A5	50	3	4	2
A6	55	51	98	26.7
A7	58.01	45	96	28.3
A8	56.31	113	208	83.3
A9	56.91	78	141	65
A10	52.15	37	55	25.7

>TRINITY_DN43068_c0_g2_i4 from sample A8 / Example spliced isoform

TAAAAAGTGATTTTCGGATCAAGGATCAGATTGGGGTCAGTGTCCAAGCTTACAAGCGAGAAAACAGGAAGATAATGTCTAATAAACCTCGTCAATTGAGGTGAAACACTCAAATAATTAAGATTTTGTCATAACCGAGGGGCTGTGGAACTTGGGAGCGTCGCAGATATCGAATTTGGGACCAAAGAATGGCCTCCAAA
CTCTGCCCATCGTCTCCCGCTCTGGGTTTCTCCAACTCCTCACTGCTGCCCAAATCGCGTCAATTGACAGAAACAACACTTCCCACGCCCACCACGAAACTATGTAGAAATCGGGCACGACGGGCATCACTTCATCACTCAGGAAGCGAATGGCGAATTCCCCGTGCGATGTCATCGGCCCAATCCGCGACCCAGAAACA
GGGCGAGAATCAGAATGGGAGTGTTAGCCTGGAGGCGGGGACAGTTCCCAAGGACTTGGTTTCTCTGCCCAGGCCTCTGTCTGTGACGGATCTAGCTACACCACCCAGCCATGGTTCTCAGGTTCGTGTGGCGTATCAGGGAGTTCCTGGAGCATACAGTGAGGCTGCAGCATTGAAAGCTTATCCACAGTGCGAGGCAG
TTCCTTGCGAACAATTTGAAGCGGCATTCCAGGCAGTTGAACTGTGGCTTGTTGATAAAGCAGTTTTGCCTATTGAAAATTCACTCGGAGGCAGCATTCACCGTAATTATGATTTACTTCTTCGCCACCGCTTGCATATAGTAGGTGAAGTGCAGCTTGCAGTTCATCACTGCCTTTTGGGTCTTCCTGGTGTGAAGAAG
GAAGAGCTAAAGCGTGTTGTAAGCCATCCCCAGGCTCTCTCCCAATGTGAGCACACATTGAGCACTTTGGGGGTTATACGTGAAGCAGTAGATGATACGGCTGGGGCTGCCCAGTTTATAGCTGCTAATAATCTTCGAGACACAGGGGCTGTTGCAAGTGTCCGAGCTGCTGAGATTTATGGTCTACAGATTCTTGCGGA
TGGAATTCAGGATGATTCAGACAATGTTACTCGGTTCTTAATGTTGGCAAGGGAGCCCATCATTCCAAGAATTGACAGACCATTCAAGACGAGCATTGTTTTCACTCTCGAGGAGGGACCTGGAGTTCTTTTTAAGGCACTTGCAGTGTTTGCTCTAAGAGATATCAATCTAACGAAGATAGAGAGTAGACCTCAGAGAA
AGCGGCCATTGCGGGTAGTTGATGATAGTAATACTGGTGCTGCAAAGTATTTTGACTATCTCTTCTACATTGACTTTGAAGCTTCCATGGCTGATCCACGAGCACAAAATGCCTTAGGTCACCTTCAGGAATTTGCGACATTTATGCGTGTTTTGGGAAGCTATCCTATGGACATGACCCCCATGGGTCGATTATAAGCC
TTATCTGATAAAAACTTATATTATTTGATGTACACTTATATAAGAAGTGGTTTGTTCATGAGCAAAGATTTTCTGTAGATAAATCTTTTCCTGCTTTGAGCATAGCGAAACAAATATTCCAGCTCCCAGTATTTATCTTCTGCATGGGATTTGTTTGAGAAGATGGGATTCGAGAGGGTGTAACACTACTTATTTAACAT
TTTTTGACAATTTGTCCAAATTTCTGTTCGTCTTACCTCAAGGCACTTTTTAGTGACATACAACCACTTGCTGATATTTTGAAAATATGTAGATACATACATATGTTCAGCTTTTGGAGCTGCATTCCCCTGTTACTGTACTTGCACATGCACCATACAAAATTTACAGAGAAAGGGCTGGCTTTGTATTGTATCAAATC
ATGTAATTAGAATTGTTGAAATTGCATTTAAGCTGGGAAATCAACCTTGGTAACTCTATCTGCTTTTGAAGTATTATTATGCCTGGTCTACCACGGGTATGTTTGGAAGTTGCCATCATAAGTAACATTAGGAACATACTCGTCCTGGTGATGCCTTTTTGAGAAGACATACAATGCAGTCAAATCTACTTGTAACAGAA
ATCTTTAAAATAGATTGGTGTGAAGCTGAATTGAAGTTGATGATAGATGCTTTTATACTCCATATTTGAAACAACCTGTTTTTTCTTGGATGGATTCTTCTCTTATTTCCTATTATTTTTGTACTTGAAGTAGTTAATTAAAACATTTGCAAATTATAGTCACAATGGTTCATGTTCAATGACCGTGAGACAGTTTAAAT
GTAGTTTGCACGAAGTTTACAATATAA

>TRINITY_DN43068_c0_g2_i7 from sample A8 / Example unspliced isoform:

TAAAAAGTGATTTTCGGATCAAGGATCAGATTGGGGTCAGTGTCCAAGCTTACAAGCGAGAAAACAGGAAGATAATGTCTAATAAACCTCGTCAATTGAGGTGAAACACTCAAATAATTAAGATTTTGTCATAACCGAGGGGCTGTGGAACTTGGGAGCGTCGCAGATATCGAATTTGGGACCAAAGAATGGCCTCCAAA
CTCTGCCCATCGTCTCCCGCTCTGGGTTTCTCCAACTCCTCACTGCTGCCCAAATCGCGTCAATTGACAGAAACAACACTTCCCACGCCCACCACGAAACTATGTAGAAATCGGGCACGACGGGCATCACTTCATCACTCAGGAAGCGAATGGCGAATTCCCCGTGCGATGTCATCGGCCCAATCCGCGACCCAGAAACA
GGGCGAGAATCAGAATGGGAGTGTTAGCCTGGAGGCGGGGACAGTTCCCAAGGACTTGGTTTCTCTGCCCAGTTCGTGTTTTCATGTCTCCATGCAAAAAAAATCATACTCAGTTTGTAATTCGTCCGAGAAATGGTATCATTTTTATCTTCCATTTTTTTCCCTTCAAGTCACATAAATTGTCGGTTCATCATGCAGGG
CCTCTGTCTGTGACGGATCTAGCTACACCACCCAGCCATGGTTCTCAGGTTCGTGTGGCGTATCAGGGAGTTCCTGGAGCATACAGTGAGGCTGCAGCATTGAAAGCTTATCCACAGTGCGAGGCAGTTCCTTGCGAACAATTTGAAGCGGCATTCCAGGCAGTTGAACTGTGGCTTGTTGATAAAGCAGTTTTGCCTAT
TGAAAATTCACTCGGAGGCAGCATTCACCGTAATTATGATTTACTTCTTCGCCACCGCTTGCATATAGTAGGTGAAGTGCAGCTTGCAGTTCATCACTGCCTTTTGGGTCTTCCTGGTGTGAAGAAGGAAGAGCTAAAGCGTGTTGTAAGCCATCCCCAGGCTCTCTCCCAATGTGAGCACACATTGAGCACTTTGGGGG
TTATACGTGAAGCAGTAGATGATACGGCTGGGGCTGCCCAGTTTATAGCTGCTAATAATCTTCGAGACACAGGGGCTGTTGCAAGTGTCCGAGCTGCTGAGATTTATGGTCTACAGATTCTTGCGGATGGAATTCAGGATGATTCAGACAATGTTACTCGGTTCTTAATGTTGGCAAGGGAGCCCATCATTCCAAGAATT
GACAGACCATTCAAGACGAGCATTGTTTTCACTCTCGAGGAGGGACCTGGAGTTCTTTTTAAGGCACTTGCAGTGTTTGCTCTAAGAGATATCAATCTAACGAAGATAGAGAGTAGACCTCAGAGAAAGCGGCCATTGCGGGTAGTTGATGATAGTAATACTGGTGCTGCAAAGTATTTTGACTATCTCTTCTACATTGA
CTTTGAAGCTTCCATGGCTGATCCACGAGCACAAAATGCCTTAGGTCACCTTCAGGAATTTGCGACATTTATGCGTGTTTTGGGAAGCTATCCTATGGACATGACCCCCATGGGTCGATTATAAGCCTTATCTGATAAAAACTTATATTATTTGATGTACACTTATATAAGAAGTGGTTTGTTCATGAGCAAAGATTTTC
TGTAGATAAATCTTTTCCTGCTTTGAGCATAGCGAAACAAATATTCCAGCTCCCAGTATTTATCTTCTGCATGGGATTTGTTTGAGAAGATGGGATTCGAGAGGGTGTAACACTACTTATTTAACATTTTTTGACAATTTGTCCAAATTTCTGTTCGTCTTACCTCAAGGCACTTTTTAGTGACATACAACCACTTGCTG
ATATTTTGAAAATATGTAGATACATACATATGTTCAGCTTTTGGAGCTGCATTCCCCTGTTACTGTACTTgtgagtaatgttaagatttctagcctcctgataccaaagtaaacaataataattggatcaaaagattgatagtgtattgtattgaattgttagtactgtattccatgaaattcttttccagcctcaataa
ggttgttctgtaagtgcagGCACATGCACCATACAAAATTTACAGAGAAAGGGCTGGCTTTGTATTGTATCAAATCATGTAATTAGAATTGTTGAAATTGCATTTAAGCTGGGAAATCAACCTTGGTAACTCTATCTGCTTTTGAAGTATTATTATGCCTGGTCTACCACGGGTATGTTTGGAAGTTGCCATCATAAGTA
ACATTAGGAACATACTCGTCCTGGTGATGCCTTTTTGAGAAGACATACAATGCAGTCAAATCTACTTGTAACAGAAATCTTTAAAATAGATTGGTGTGAAGCTGAATTGAAGTTGATGATAGATGCTTTTATACTCCATATTTGAAACAACCTGTTTTTTCTTGGATGGATTCTTCTCTTATTTCCTATTATTTTTGTAC
TTGAAGTAGTTAATTAAAACATTTGCAAATTATAGTCACAATGGTTCATGTTCAATGACCGTGAGACAGTTTAAATGTAGTTTGCACGAAGTTTACAATATAA

Intron 3 GTTCGTGTTT ... CATCATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	23.66	68	21.1	5.6
A2	8.05	42.2	3.7	9.7
A3	24.49	64.4	20.9	19.9
A4	30.66	42	18.6	5.5
A5	23.52	38	11.7	8.4
A6	22.97	92.7	27.7	32.7
A7	18.01	171.1	37.6	36.8
A8	30.54	118	51.9	32.6
A9	20.29	174.8	44.5	36.7
A10	19.33	154.3	37	25.6

>TRINITY_DN125352_c0_g1_i1 from sample A1 / Example spliced isoform

GTCCAAGCTTACAAGCGAGAAAACAGGAAGATAATGTCTAATAAACCTCGTCAATTGAGGTGAAACACTCAAATAATTAAGATTTTGTCATAACCGAGGGGCTGTGGAACTTGGGAGCGTCGCAGATATCGAATTTGGGACCAAAGAATGGCCTCCAAACTCTGCCCATCGTCTCCCGCTCTGGGTTTCTCCAACTCCTC
ACTGCTGCCCAAATCGCGTCAATTGACAGAAACAACACTTCCCACGCCCACCACGAAACTATGTAGAAATCGGGCACGACGGGCATCACTTCATCACTCAGGAAGCGAATGGCGAATTCCCCGTGCGATGTCATCGGCCCAATCCGCGACCCAGAAACAGGGCGAGAATCAGAATGGGAGTGTTAGCCTGGAGGCGGGGA
CAGTTCCCAAGGACTTGGTTTCTCTGCCCAGGCCTCTGTCTGTGACGGATCTAGCTACACCACCCAGCCATGGTTCTCAGGTTCGTGTGGCGTATCAGGGAGTTCCTGGCGCATACAGTGAGGCTGCAGCATTGAAAGCTTATCCACAGTGCGAGGCAGTTCCTTGCGAACAATTTGAAGCGGCATTCCAGGCAGTTGAA
CTGTGGCTTGTTGATAAAGCAGTTTTGCCTATTGAAAATTCACTCGGAGGCAGCATTCACCGTAATTATGATTTACTTCTTCGCCACCGCTTGCATATAGTAGGTGAAGTGCAGCTTGCAGTTCATCACTGCCTTTTGGGTCTTCCTGGTGTGAATAAGGAAGAGCTAAAGCGTGTTGTAAGCCATCCCCAGGCTCTCTC
CCAATGTGAGCACACATTGAGCACTTTGGGGGTTATACGTGAAGCAGTAGATGATACGGCTGGGGCTGCCCAGTTTATAGCTGCTAATAATCTTCGAGACACAGGGGCTGTTGCAAGTGTCCGAGCTGCTGAGATTTATGGTCTACAGATTCTTGCGGATGGAATTCAGGATGATTCAGACAATGTTACTCGGTTCTTAA
TGTTGGCAAGGGAGCCCATCATTCCAAGAATTGACAGACCATTCAAGACGAGCATTGTTTTCACTCTCGAGGAGGGACCTGGAGTTCTTTTTAAGGCACTTGCAGTGTTTGCTCTAAGAGATATCAATCTAACGAAGATAGAGAGTAGACCTCAGAGAAAGCGGCCATTGCGGGTAGTTGATGATAGTAATACTGGTGCT
GCAAAGTATTTTGACTATCTCTTCTACATTGACTTTGAAGCTTCCATGGCTGATCCACGAGCACAAAATGCCTTAGGTCACCTTCAGGAATTTGCGACATTTATGCGTGTTTTGGGAAGCTATCCTATGGACATGACCCCCATGGGTCGATTATAAGCCTTATCTGATAAAAACTTATATTATTTGATGTACACTTATAT
AAGAAGTGGTTTGTTCATGAGCAAAGATTTTCTGTAGATAAATCTTTTCCTGCTTTGAGCATAGCGAAACAAATATTCCAGCTCCCAGTATTTATCTTCTGCATGGGATTTGTTTGAGAAGATGGGATTCGAGAGGGTGTAACACTACTTATTTAACATTTTTTGACAATTTGTCCAAATTTCTGTTTGTCTTACCTCAA
GGCACTTTTTAGTGACATACAACCACTTGCTGATATTTTGAAAATATGTAGATACATACATATGTTCAGCTTTTGGAGCTGCATTCCCCTGTTACTGTACTTGTGAGTAAAGGCACATGCACCATACAAAATTTACAGAGAAAGGGCTGGCTTTGTATTGTATCAAATCATGTAATTAGAATTGTTGAAATTGCATTTAA
GCTGGGAAATCAACCTTGGTAACTCTATCTGCTTTTGAAGTATTATTATGCCTGGTCTACCACGGGTATGTTTGGAAGTTGCCATCATAAGTAACATTAGGAACATACTCGTCCTGGTGATGCCTTTTTGAGAAGACATACAATGCAGTCAAATCTACTTGTAACAGAAATCTTTAAAATAGATTGGTGTGAAG

>TRINITY_DN125352_c0_g1_i9 from sample A1 / Example unspliced isoform:

GTCCAAGCTTACAAGCGAGAAAACAGGAAGATAATGTCTAATAAACCTCGTCAATTGAGGTGAAACACTCAAATAATTAAGATTTTGTCATAACCGAGGGGCTGTGGAACTTGGGAGCGTCGCAGATATCGAATTTGGGACCAAAGAATGGCCTCCAAACTCTGCCCATCGTCTCCCGCTCTGGGTTTCTCCAACTCCTC
ACTGCTGCCCAAATCGCGTCAATTGACAGAAACAACACTTCCCACGCCCACCACGAAACTATGTAGAAATCGGGCACGACGGGCATCACTTCATCACTCAGGAAGCGAATGGCGAATTCCCCGTGCGATGTCATCGGCCCAATCCGCGACCCAGAAACAGGGCGAGAATCAGAATGGGAGTGTTAGCCTGGAGGCGGGGA
CAGTTCCCAAGGACTTGGTTTCTCTGCCCAgttcgtgttttcatgtctccatgcaaaaaaaatcatactcagtttgtaattcgtccgagaaatggtatcatttttatcttccatttttttcccttcaagtcacataaattgtcggttcatcatgcagGGCCTCTGTCTGTGACGGATCTA

Intron 4 GCACATGTTT ... GTTCTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	22.46	107	33	29
A2	25.51	73	28	22
A3	24.42	65	17	25
A4	19.59	39	8	11
A5	20	38	7	12
A6	20.15	214	59	49
A7	20.21	308	66	90
A8	18.88	247	52	63
A9	19.15	247	53	64
A10	20.48	233	47	73

>TRINITY_DN45521_c0_g1_i1 from sample A7 / Example spliced isoform

AAAGTAATTCAAAGTTTCAATGAGTTCGAAGACATAGTGAGGAGATTGGGGTCAGTGTCCAAGCTTACAAGCGAGAAAACAGGAAGATAATGTCTAATAAACCTCGTCAATTGAGGTGAAACACTCAAATAATTAAGATTTTGTCATAACCGAGGGGCTGTGGAACTTGGGAGCGTCGCAGATATCGAATTTGGGACCAA
AGAATGGCCTCCAAACTCTGCCCATCGTCTCCCGCTCTGGGTTTCTCCAACTCCTCACTGCTGCCCAAATCGCGTCAATTGACAGAAACAACACTTCCCACGCCCACCACGAAACTATGTAGAAATCGGGCACGACGGGCATCACTTCATCACTCAGGAAGCGAATGGCGAATTCCCCGTGCGATGTCATCGGCCCAATC
CGCGACCCAGAAACAGGGCGAGAATCAGAATGGGAGTGTTAGCCTGGAGGCGGGGACAGTTCCCAAGGACTTGGTTTCTCTGCCCAGGCCTCTGTCTGTGACGGATCTAGCTACACCACCCAGCCATGGTTCTCAGGTTCGTGTGGCGTATCAGGGAGTTCCTGGAGCATACAGTGAGGCTGCAGCATTGAAAGCTTATC
CACAGTGCGAGGCAGTTCCTTGCGAACAATTTGAAGCGGCATTCCAGGCAGTTGAACTGTGGCTTGTTGATAAAGCAGTTTTGCCTATTGAAAATTCACTCGGAGGCAGCATTCACCGTAATTATGATTTACTTCTTCGCCACCGCTTGCATATAGTAGGTGAAGTGCAGCTTGCAGTTCATCACTGCCTTTTGGGTCTT
CCTGGTGTGAAGAAGGAAGAGCTAAAGCGTGTTGTAAGCCATCCCCAGGCTCTCTCCCAATGTGAGCACACATTGAGCACTTTGGGGGTTATACGTGAAGCAGTAGATGATACGGCTGGGGCTGCCCAGTTTATAGCTGCTAATAATCTTCGAGACACAGGGGCTGTTGCAAGTGTCCGAGCTGCTGAGATTTATGGTCT
ACAGATTCTTGCGGATGGAATTCAGGATGATTCAGACAATGTTACTCGGTTCTTAATGTTGGCAAGGGAGCCCATCATTCCAAGAATTGACAGACCATTCAAGACGAGCATTGTTTTCACTCTCGAGGAGGGACCTGGAGTTCTTTTTAAGGCACTTGCAGTGTTTGCTCTAAGAGATATCAATCTAACGAAGATAGAGA
GTAGACCTCAGAGAAAGCGGCCATTGCGGGTAGTTGATGATAGTAATACTGGTGCTGCAAAGTATTTTGACTATCTCTTCTACATTGACTTTGAAGCCTCTATGGCTGATCTACGAGCGCAAAGTGCATTAGGTCATCTACAGGTAAAGTTTTGTTAAGCCATCTTTTGAGGGAGTTGTTCCAGAGTGAG

>TRINITY_DN45521_c0_g1_i9 from sample A7 / Example unspliced isoform:

AAAGTAATTCAAAGTTTCAATGAGTTCGAAGACATAGTGAGGAGATTGGGGTCAGTGTCCAAGCTTACAAGCGAGAAAACAGGAAGATAATGTCTAATAAACCTCGTCAATTGAGGTGAAACACTCAAATAATTAAGATTTTGTCATAACCGAGGGGCTGTGGAACTTGGGAGCGTCGCAGATATCGAATTTGGGACCAA
AGAATGGCCTCCAAACTCTGCCCATCGTCTCCCGCTCTGGGTTTCTCCAACTCCTCACTGCTGCCCAAATCGCGTCAATTGACAGAAACAACACTTCCCACGCCCACCACGAAACTATGTAGAAATCGGGCACGACGGGCATCACTTCATCACTCAGGAAGCGAATGGCGAATTCCCCGTGCGATGTCATCGGCCCAATC
CGCGACCCAGAAACAGGGCGAGAATCAGAATGGGAGTGTTAGCCTGGAGGCGGGGACAGTTCCCAAGGACTTGGTTTCTCTGCCCAGGCCTCTGTCTGTGACGGATCTAGCTACACCACCCAGCCATGGTTCTCAGGTTCGTGTGGCGTATCAGGGAGTTCCTGGAGCATACAGTGAGGCTGCAGCATTGAAAGCTTATC
CACAGTGCGAGGCAGTTCCTTGCGAACAATTTGAAGCGGCATTCCAGGCAGTTGAACTGTGGCTTGTTGATAAAGCAGTTTTGCCTATTGAAAATTCACTCGGAGGCAGCATTCACCGTAATTATGATTTACTTCTTCGCCACCGCTTGCATATAGTAGGTGAAGTGCAGCTTGCAGTTCATCACTGCCTTTTGGGTCTT
CCTGGTGTGAAGAAGGAAGAGCTAAAGCGTGTTGTAAGCCATCCCCAGGCTCTCTCCCAATGTGAGCACACATTGAGCACTTTGGGGGTTATACGTGAAGCAGTAGATGATACGGCTGGGGCTGCCCAGTTTATAGCTGCTAATAATCTTCGAGACACAGGGGCTGTTGCAAGTGTCCGAGCTGCTGAGATTTATGGTCT
ACAGATTCTTGCGGATGGAATTCAGgcacatgttttgtttttctttctttctatttctgcaacattcttctatcaatttattcatgaaacaatgatgtacgagcatattacaaaaaaaccatgtggcagaagggctatgaacacaagacaaaatcaggggtaaattaccaaccttccctgcaacaacaaaccctacagct
aaaaggtggggtgtcatgtaaatcaggagtttgtaacgaaccatactattcttccctctaaaaactctaaggttgtcatggaagggagcagcatgaccccagttgcaaaaggtggggtagctaaggtttaagctgctgaatgcattcacaactctactcataggtggctacatccatcagactagaactcacaatcacag
aagtgcttcattccacagcactacagaggtttgccagggagcacatagtctcaaacacccaaaacccacaactcttgtagtgactctctgcgcagggcagccatccctttgaatgggataagcaatccttcccacagttcgtaactcggcgtcaagctgtgtgcccatgagcagatctaccctggttaactggccataca
gcagcatgctgccacacttcctccaaaagctcactgcatctgcctcacgttctcctcttgctggcagtagtgtgtgctactgagagtggcctgcaaacaagtatgcctgctgcactttgccaggacctgttcaactgcaggtggtctgccactccctcattccagcatcggtccactgaaacagctgccatgatactctc
ttcactgctgaaacgtctctaagtgatgcacagaccccagagttggctgggcattgtccccctcaatgctgcttcctcacttttcctggttgccagcatgccattctcgacatgctggggaaacacactaggatttgctgcaggagctgctcgagggagggagacaggtgcctctcctttttcctcctgttcactcctct
catcaaactcctaggcacatgttgtcaagtctatgtttttatttatttattttttgaaagtgcttctttttaaactcatttagaaacattacaactggttctaagagattgtgtactataaatggcttgtttccatgagtggaacagtcctcgaggggtgaaccttaaacacaagcactcctgtttggctaggctgccgt
gacaggtggttactgttccaagtcactcaggacttgcacctggccccaacggcttattcgtgtctcaggtgagttgaaccttggtgggtggtctgacttgctaccatctttgctgctgaaccacaaccccattgacaactctatatgtttattgtctagaaaatgatattacatagtgactttgtaatatacatgtgatg
ttgaatttcggtaggcctgatctgatctgacaatttcatgttcttgcagGATGATTCAGACAATGTTACTCGGTTCTTAATGTTGGCAAGGGAGCCCATCATTCCAAGAATTGACAGACCATTCAAGACGAGCATTGTTTTCACTCTCGAGGAGGGACCTGGAGTTCTTTTTAAGGCACTTGCAGTGTTTGCTCTAAGAG
ATATCAATCTAACGAAGATAGAGAGTAGACCTCAGAGAAAGCGGCCATTGCGGGTAGTTGATGATAGTAATACTGGTGCTGCAAAGTATTTTGACTATCTCTTCTACATTGACTTTGAAGCTTCCATGGCTGATCCACGAGCACAAAATGCCTTAGGTCACCTTCAGGAATTTGCGACATTTATGCGTGTTTTGGGAAGC
TATCCTATGGACATGACCCCCATGGGTCGATTATAAGCCTTATCTGATAAAAACTTATATTATTTGATGTACACTTATATAAGAAGTGGTTTGTTCATGAGCAAAGATTTTCTGTAGATAAATCTTTTCCTGCTTTGAGCATAGCGAAACAAATATTCCAGCTCCCAGTATTTATCTTCTGCATGGGATTTGTTTGAGAA
GATGGGATTCGAGAGGGTGTAACACTACTTATTTAACATTTTTTGACAATTTGTCCAAATTTCTGTTCGTCTTACCTCAAGGCACTTTTTAGTGACATACAACCACTTGCTGATATTTTGAAAATATGTAGATACATACATATGTTCAGCTTTTGGAGCTGCATTCCCCTGTTACTGTACTTGTGAGTAATGTTAAGATT
TCTAGCCTCCTGATACCAAAGTAAACAATAATAATTGGATCAAAAGATTGATAGTGTATTGTATTGAATTGTTAGTACTGTATTCCATGAAATTCTTTTCCAGCCTCAATAAGGTTGTTCTGTAAGTGCAGGCACATGCACCATACAAAATTTACAGAGAAAGGGCTGGCTTTGTATTGTATCAAATCATGTAATTAGAA
TTGTTGAAATTGCATTTAAGCTGGGAAATCAACCTTGGTAACTCTATCTGCTTTTGAAGTATTATTATGCCTGGTCTACCACGGGTATGTTTGGAAGTTGCCATCATAAGTAACATTAGGAACATACTCGTCCTGGTGATGCCTTTTTGAGAAGACATACAATGCAGTCAAATCTACTTGTAACAGAAATCTTTAAAATA
GATTGGTGTGAAGCTGAATTGAAGTTGATGATAGATGCTTTTATACTCCATATTTGAAACAACCTGTTTTTTCTTGGATGGATTCTTCTCTTATTTCCTATTATTTTTGTACTTGAAGTAGTTAATTAAAACATTTGCAAATTATA