NA ----> NA
Intron 1 GTGAAATGCA ... GTCTTCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 37.93 | 9 | 3 | 8 |
| A2 | 81.82 | 1 | 5 | 4 |
| A3 | 54.55 | 5 | 5 | 7 |
| A4 | 61.54 | 5 | 3 | 13 |
| A5 | 50 | 4 | 4 | 4 |
| A6 | 46.67 | 20 | 23 | 12 |
| A7 | 54.17 | 22 | 35 | 17 |
| A8 | 50.98 | 25 | 30 | 22 |
| A9 | 46.99 | 22 | 22 | 17 |
| A10 | 40.74 | 16 | 17 | 5 |
>TRINITY_DN44639_c0_g2_i1 from sample A8 / Example spliced isoformCCCGTCGATAGTTAAAACCTTCACCACGCCGCAACGGATCGAGGAATAACCAGGACGGATGGCAATTAACCTAAACATGAGTGATGGCAGTAACCTGAAGATGCCGCGCATAAGATCAGAGGTTCCGAAGGAGTTAAGGTGTTAAGGTCCATGCACACACGGCCATGGAAGCGATGGAGCGCCGTCGGATTACAGGCGAG
GGACAATACCAAGAAATAGTTTTGACGGGTTGATCCGTGCCAGCCACGGTTATATCTTCCAGTTATGCGCGCTCCTCGCGCATGTGTGTATCAGCGCTGACAGCTTGCAAACTTGCTTTGAACGTTACAGGGCAGTAGCAAGTTTTACCTATTTACTTGGACGTGGTCGAGAGGTCATACTTCAATAGCTCGGACAAGGT
AAGGCTTTGATTGCCAGGACGATCTACAGGATCCTGGATCCCGTCATTCTCTGTACAATCGAACCTTGCCCTTGAAATTTATTCTGTGTGTAACGTATCTGAGATCGAATCCGTTCTAATCTCCGCCTTTGGTAATCATATTTTTCATGCAACAGAATTTGGTAATCATATTCTTTTAAATTATATTCATCTCTACCCTG
TCTTTAGAAGCCGCGGAACTTCTCGTGTTAAACCTTACATCATTCGCCAGCGAAATCTTAAACTAATGTGTATCGAATGATCTCAGATTTTAGATCGATTTTAATCAGAGTTCCAAGGGGATTCGTGTTTTCCATTACTGATAGCGATCTCAGTTCCACAACAGCAATCTCAGATCTACTCCCAAAATCCGTGGCGTTCC
CAGAAATTGTTATACGATTTTGATATTCGACTCTCTGTATGTCTATGTCTTTATTGATTGGCGTTCCGGAATCCAGCTGTCAATAGATCTTTAGTTATCTGTGTCTTCTCCAAAGAAGCAGGCGTTGCCAGAATACCCTAATCTTCAGCACACCGGCGCAAAATTTGGGTTAGAACAGACCTTTAAAAAATACATAAAAA
AAGTAGTAAACATTGAGGCATTAGATCCATCTTATAGTTGTTAATGCATATGGATGAACTCCGAGTTTTCAATACTAATGTAATTGCAACCGTCACTTCAGAAACTATGTAATAAATGCTCATGGTTGTGGATTAAGATCTACAACAACATTCATGTTTAAACTATATGAGAGATCGCATATGTATATTTGATTAGATTA
AGATGATATATTTGAAGGAAAAATTTGATCATAGTAAAGATATGTGATGAAGACGAGTAAAGATATGTGATGAAGACGAAAGAACTTTTGAGGAA
>TRINITY_DN44639_c0_g2_i3 from sample A8 / Example unspliced isoform:CCCGTCGATAGTTAAAACCTTCACCACGCCGCAACGGATCGAGGAATAACCAGGACGGATGGCAATTAACCTAAACATGAGTGATGGCAGTAACCTGAAGATGCCGCGCATAAGATCAGAGGTTCCGAAGGAGTTAAGGTGTTAAGGTCCATGCACACACGGCCATGGAAGCGATGGAGCGCCGTCGGATTACAGGCGAG
GGACAATACCAAGAAATAGTTTTGACGGGTTGATCCGTGCCAGCCACGGTTATATCTTCCAGTTATGCGCGCTCCTCGCGCATGTGTGTATCAGCGCTGACAGCTTGCAAACTTGCTTTGAACgtgaaatgcaatgcctctcagagccactcctttgttcaattctctcagttttttgtttaaattgcattgattttaat
gcccgtctcagactttggaggaactgggtactatgttttagtcctcatttcttgatctgttattgattttagttcttttgttacaaactttatatattgtcttcgcagGTTACAGGGCAGTAGCAAGTTTTACCTATTTACTTGGACGTGGTCGAGAGGTCATACTTCAATAGCTCGGACAAGGTAAGGCTTTGATTGCC
AGGACGATCTACAGGATCCTGGATCCCGTCATTCTCTGTACAATCGAACCTTGCCCTTGAAATTTATTCTGTGTGTAACGTATCTGAGATCGAATCCGTTCTAATCTCCGCCTTTGGTAATCATATTTTTCATGCAACAGAATTTGGTAATCATATTCTTTTAAATTATATTCATCTCTACCCTGTCTTTAGAAGCCGCG
GAACTTCTCGTGTTAAACCTTACATCATTCGCCAGCGAAATCTTAAACTAATGTGTATCGAATGATCTCAGATTTTAGATCGATTTTAATCAGAGTTCCAAGGGGATTCGTGTTTTCCATTACTGATAGCGATCTCAGTTCCACAACAGCAATCTCAGATCTACTCCCAAAATCCGTGGCGTTCCCAGAAATTGTTATAC
GATTTTGATATTCGACTCTCTGTATGTCTATGTCTTTATTGATTGGCGTTCCGGAATCCAGCTGTCAATAGATCTTTAGTTATCTGTGTCTTCTCCAAAGAAGCAGGCGTTGCCAGAATACCCTAATCTTCAGCACACCGGCGCAAAATTTGGGTTAGAACAGACCTTTAAAAAATACATAAAAAAAGTAGTAAACATTG
AGGCATTAGATCCATCTTATAGTTGTTAATGCATATGGATGAACTCCGAGTTTTCAATACTAATGTAATTGCAACCGTCACTTCAGAAACTATGTAATAAATGCTCATGGTTGTGGATTAAGATCTACAACAACATTCATGTTTAAACTATATGAGAGATCGCATATGTATATTTGATTAGATTAAGATGATATATTTGA
AGGAAAAATTTGATCATAGTAAAGATATGTGATGAAGACGAGTAAAGATATGTGATGAAGACGAAAGAACTTTTGAGGAA
Intron 2 GCAGGGACTA ... TTTATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 10 | 3 | 5 |
| A2 | 46.15 | 7 | 1 | 6 |
| A3 | 43.01 | 11.9 | 9 | 9 |
| A4 | 66.67 | 5 | 1 | 10 |
| A5 | 58.33 | 5 | 0 | 7 |
| A6 | 45.32 | 33.8 | 4.7 | 28 |
| A7 | 36.7 | 44.9 | 6.8 | 26 |
| A8 | 30.77 | 45 | 7 | 20 |
| A9 | 28.65 | 19.9 | 3.9 | 8 |
| A10 | 33.02 | 30.4 | 1.9 | 15 |
>TRINITY_DN59694_c0_g1_i1 from sample A4 / Example spliced isoformGGACGGATGGCAATTAACCTAAACATGAGTGATGGCAGTAACCTGAAGATGCCGCGCATAAGATCAGAGGTTCCGAAGGAGTTAAGGTGTTAAGGTCCATGCACACACGGCCATGGAAGCGATGGAGCGCCGTCGGATTACAGGCGAGGGACAATACCAAGAAATAGTTTTGACGGGTTGATCCGTGCCAGCCACGGTTA
TATCTTCCAGTTATGCGCGCTCCTCGCGCATGTGTGTATCAGCGCTGACAGCTTGCAAACTTGCTTTGAACGTGAAATGCAATGCCTCTCAGAGCCACTCCTTTGTTCAATTCTCTCAGTTTTTTGTTTAAATTGCATTGATTTTAATGCCCGTCTCAGACTTTGGAGGAACTGGGTACTATGTTTTAGTCCTCATTTCT
TGATCTGTTATTGATTTTAGTTCTTTTGTTACAAACTTTATATATTGTCTTCGCAGGTTACAGGGCAGTAGCAAGTTTTACCTATTTACTTGGACGTGGTCGAGAGGTCATACTTCAATAGCTCGGACAAGGTAAGGCTTTGATTGCCAGGACGATCTACAGGATCCTGGATCCCGTCATTCTCTGTACAATCGAACCTT
GCCCTTGAAATTTATTCTGTGTGTAACGTATCTGAGATCGAATCCGTTCTAATCTCCGCCTTTGGTAATCATATTTTTCATGCAACAGAATTTGGTAATCATATTCTTTTAAATTATATTCATCTCTACCCTGTCTTTAGAAGCCGCGGAACTTCTCGTGTTAAACCTTACATCATTCGCCAGCGAAATCTTAAACTAAT
GTGTATCGAATGATCTCAGATTTTAGATCGATTTTAATCAGAGTTCCAAGGGGATTCGTGTTTTCCATTACTGATAGCGATCTCAGTTCCACAACAGCAATCTCAGATCTACTCCCAAAATCCGTGGCGTTCCCAGAAATTGTTATACGATTTTGATATTCGACTCTCTGTATGTCTATGTCTTTATTGATTGGCGTTCC
GGAATCCAGCTGTCAATAGATCTTTAGTTATCTGTGTCTTCTCCAAAGAAGCAGGCGTTGCCAGAATACCCTAATCTTCAGCACACCGGCG
>TRINITY_DN59694_c0_g1_i2 from sample A4 / Example unspliced isoform:GGACGGATGGCAATTAACCTAAACATGAGTGATGGCAGTAACCTGAAGATGCCGCGCATAAGATCAGAGgcagggactacatgtttaggttaattgcatagatcaaaggcagggatgaaaaagactgagaggagaccaggtattgactattttgctgttttttattgcagGTTCCGAAGGAGTTAAGGTGTTAAGGTCCA
TGCACACACGGCCATGGAAGCGATGGAGCGCCGTCGGATTACAGGCGAGGGACAATACCAAGAAATAGTTTTGACGGGTTGATCCGTGCCAGCCACGGTTATATCTTCCAGTTATGCGCGCTCCTCGCGCATGTGTGTATCAGCGCTGACAGCTTGCAAACTTGCTTTGAACGTGAAATGCAATGCCTCTCAGAGCCACT
CCTTTGTTCAATTCTCTCAGTTTTTTGTTTAAATTGCATTGATTTTAATGCCCGTCTCAGACTTTGGAGGAACTGGGTACTATGTTTTAGTCCTCATTTCTTGATCTGTTATTGATTTTAGTTCTTTTGTTACAAACTTTATATATTGTCTTCGCAGGTTACAGGGCAGTAGCAAGTTTTACCTATTTACTTGGACGTGG
TCGAGAGGTCATACTTCAATAGCTCGGACAAGGTAAGGCTTTGATTGCCAGGACGATCTACAGGATCCTGGATCCCGTCATTCTCTGTACAATCGAACCTTGCCCTTGAAATTTATTCTGTGTGTAACGTATCTGAGATCGAATCCGTTCTAATCTCCGCCTTTGGTAATCATATTTTTCATGCAACAGAATTTGGTAAT
CATATTCTTTTAAATTATATTCATCTCTACCCTGTCTTTAGAAGCCGCGGAACTTCTCGTGTTAAACCTTACATCATTCGCCAGCGAAATCTTAAACTAATGTGTATCGAATGATCTCAGATTTTAGATCGATTTTAATCAGAGTTCCAAGGGGATTCGTGTTTTCCATTACTGATAGCGATCTCAGTTCCACAACAGCA
ATCTCAGATCTACTCCCAAAATCCGTGGCGTTCCCAGAAATTGTTATACGATTTTGATATTCGACTCTCTGTATGTCTATGTCTTTATTGATTGGCGTTCCGGAATCCAGCTGTCAATAGATCTTTAGTTATCTGTGTCTTCTCCAAAGAAGCAGGCGTTGCCAGAATACCCTAATCTTCAGCACACCGGCG
Intron 3 GTTATGCGCG ... GTCTTCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 45.45 | 9 | 7 | 8 |
| A2 | 44.68 | 13 | 17 | 4 |
| A3 | 68 | 4 | 10 | 7 |
| A4 | 54.55 | 10 | 11 | 13 |
| A5 | 62.5 | 3 | 6 | 4 |
| A6 | 61.64 | 14 | 33 | 12 |
| A7 | 60 | 23 | 52 | 17 |
| A8 | 65.14 | 19 | 49 | 22 |
| A9 | 58.97 | 24 | 52 | 17 |
| A10 | 54.67 | 17 | 36 | 5 |
>TRINITY_DN47042_c0_g1_i2 from sample A7 / Example spliced isoformGCCCCATCGATAGTTAAAACCTTCACCACGCCGCAACGGATCGAGGAATAACCAGGACGGATGGCAATTAACCTAAACATGAGTGATGGCAGTAACCTGAAGATGCCGCGCATAAGATCAGAGGTTCCGAAGGAGTTAAGGTGTTAAGGTCCATGCACACACGGCCATGGAAGCGATGGAGCGCCGTCGGATTACAGGCG
AGGGACAATACCAAGAAATAGTTTTGACGGGTTGATCCGTGCCAGCCACGGTTATATCTTCCAGTTACAGGGCAGTAGCAAGTTTTACCTATTTACTTGGACGTGGTCGAGAGGTCATACTTCAATAGCTCGGACAAGGTAAGGCTTTGATTGCCAGGACGATCTACAGGATCCTGGATCCCGTCATTCTCTGTACAATC
GAACCTTGCCCTTGAAATTTATTCTGTGTGTAACGTATCTGAGATCGAATCCGTTCTAATCTCCGCCTTTGGTAATCATATTTTTCATGCAACAGAATTTGGTAATCATATTCTTTTAAATTATATTCATCTCTACCCTGTCTTTAGAAGCCGCGGAACTTCTCGTGTTAAACCTTACATCATTCGCCAGCGAAATCTTA
AACTAATGTGTATCGAATGATCTCAGATTTTAGATCGATTTTAATCAGAGTTCCAAGGGGATTCGTGTTTTCCATTACTGATAGCGATCTCAGTTCCACAACAGCAATCTCAGATCTACTCCCAAAATCCGTGGCGTTCCCAGAAATTGTTATACGATTTTGATATTCGACTCTCTGTATGTCTATGTCTTTATTGATTG
GCGTTCCGGAATCCAGCTGTCAATAGATCTTTAGTTATCTGTGTCTTCTCCAAAGAAGCAGGCGTTGCCAGAATACCCTAATCTTCAGCACACCGGCGCAAAATTTGGGTTAGAACAGACCTTTAAAAAATACATAAAAAAAGTAGTAAACATTGAGGCATTAGATCCATCTTATAGTTGTTAATGCATATGGATGAACT
CCGAGTTTTCAATACTAATGTAATTGCAACCGTCACTTCAGAAACTATGTAATAAATGCTCATGGTTGTGGATTAAGATCTACAACAACATTCATGTTTAAACTATATGAGAGATCGCATATGTATATTTGATTAGATTAAGATGATATATTTGAAGGAAAAATTTGATCATAGTAAAGATATGTGATGAAGACGAGTAA
AGATATGTGATGAAGACGAAAGAAC
>TRINITY_DN47042_c0_g1_i1 from sample A7 / Example unspliced isoform:GCCCCATCGATAGTTAAAACCTTCACCACGCCGCAACGGATCGAGGAATAACCAGGACGGATGGCAATTAACCTAAACATGAGTGATGGCAGTAACCTGAAGATGCCGCGCATAAGATCAGAGGTTCCGAAGGAGTTAAGGTGTTAAGGTCCATGCACACACGGCCATGGAAGCGATGGAGCGCCGTCGGATTACAGGCG
AGGGACAATACCAAGAAATAGTTTTGACGGGTTGATCCGTGCCAGCCACGGTTATATCTTCCAgttatgcgcgctcctcgcgcatgtgtgtatcagcgctgacagcttgcaaacttgctttgaacgtgaaatgcaatgcctctcagagccactcctttgttcaattctctcagttttttgtttaaattgcattgatttta
atgcccgtctcagactttggaggaactgggtactatgttttagtcctcatttcttgatctgttattgattttagttcttttgttacaaactttatatattgtcttcgcagGTTACAGGGCAGTAGCAAGTTTTACCTATTTACTTGGACGTGGTCGAGAGGTCATACTTCAATAGCTCGGACAAGGTAAGGCTTTGATTG
CCAGGACGATCTACAGGATCCTGGATCCCGTCATTCTCTGTACAATCGAACCTTGCCCTTGAAATTTATTCTGTGTGTAACGTATCTGAGATCGAATCCGTTCTAATCTCCGCCTTTGGTAATCATATTTTTCATGCAACAGAATTTGGTAATCATATTCTTTTAAATTATATTCATCTCTACCCTGTCTTTAGAAGCCG
CGGAACTTCTCGTGTTAAACCTTACATCATTCGCCAGCGAAATCTTAAACTAATGTGTATCGAATGATCTCAGATTTTAGATCGATTTTAATCAGAGTTCCAAGGGGATTCGTGTTTTCCATTACTGATAGCGATCTCAGTTCCACAACAGCAATCTCAGATCTACTCCCAAAATCCGTGGCGTTCCCAGAAATTGTTAT
ACGATTTTGATATTCGACTCTCTGTATGTCTATGTCTTTATTGATTGGCGTTCCGGAATCCAGCTGTCAATAGATCTTTAGTTATCTGTGTCTTCTCCAAAGAAGCAGGCGTTGCCAGAATACCCTAATCTTCAGCACACCGGCGCAAAATTTGGGTTAGAACAGACCTTTAAAAAATACATAAAAAAAGTAGTAAACAT
TGAGGCATTAGATCCATCTTATAGTTGTTAATGCATATGGATGAACTCCGAGTTTTCAATACTAATGTAATTGCAACCGTCACTTCAGAAACTATGTAATAAATGCTCATGGTTGTGGATTAAGATCTACAACAACATTCATGTTTAAACTATATGAGAGATCGCATATGTATATTTGATTAGATTAAGATGATATATTT
GAAGGAAAAATTTGATCATAGTAAAGATATGTGATGAAGACGAGTAAAGATATGTGATGAAGACGAAAGAAC
Intron 4 GTGTGTATCA ... GTCTTCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.86 | 10 | 7 | 8 |
| A2 | 47.37 | 10 | 14 | 4 |
| A3 | 100 | 0 | 5 | 7 |
| A4 | 51.11 | 11 | 10 | 13 |
| A5 | 47.83 | 6 | 7 | 4 |
| A6 | 73.08 | 7 | 26 | 12 |
| A7 | 59.11 | 23 | 49.5 | 17 |
| A8 | 63.64 | 18 | 41 | 22 |
| A9 | 42.68 | 45 | 50 | 17 |
| A10 | 51.43 | 17 | 31 | 5 |
>TRINITY_DN40874_c0_g4_i3 from sample A6 / Example spliced isoformTTTCAGTTGGTTAGTTAGCGTGGCGGCGGCCCCATCGATAGTTAAAACCTTCACCACGCCGCAACGGATCGAGGAATAACCAGGACGGATGGCAATTAACCTAAACATGAGTGATGGCAGTAACCTGAAGATGCCGCGCATAAGATCAGAGGTTCCGAAGGAGTTAAGGTGTTAAGGTCCATGCACACACGGCCATGGAA
GCGATGGAGCGCCGTCGGATTACAGGCGAGGGACAATACCAAGAAATAGTTTTGACGGGTTGATCCGTGCCAGCCACGGTTATATCTTCCAGTTATGCGCGCTCCTCGCGCATGTTACAGGGCAGTAGCAAGTTTTACCTATTTACTTGGACGTGGTCGAGAGGTCATACTTCAATAGCTCGGACAAGGTAAGGCTTTGA
TTGCCAGGACGATCTACAGGATCCTGGATCCCGTCATTCTCTGTACAATCGAACCTTGCCCTTGAAATTTATTCTGTGTGTAACGTATCTGAGATCGAATCCGTTCTAATCTCCGCCTTTGGTAATCATATTTTTCATGCAACAGAATTTGGTAATCATATTCTTTTAAATTATATTCATCTCTACCCTGTCTTTAGAAG
CCGCGGAACTTCTCGTGTTAAACCTTACATCATTCGCCAGCGAAATCTTAAACTAATGTGTATCGAATGATCTCAGATTTTAGATCGATTTTAATCAGAGTTCCAAGGGGATTCGTGTTTTCCATTACTGATAGCGATCTCAGTTCCACAACAGCAATCTCAGATCTACTCCCAAAATCCGTGGCGTTCCCAGAAATTGT
TATACGATTTTGATATTCGACTCTCTGTATGTCTATGTCTTTATTGATTGGCGTTCCGGAATCCAGCTGTCAATAGATCTTTAGTTATCTGTGTCTTCTCCAAAGAAGCAGGCGTTGCCAGAATACCCTAATCTTCAGCACACCGGCGCAAAATTTGGGTTAGAACAGACCTTTAAAAAATACATAAAAAAAGTAGTAAA
CATTGAGGCATTAGATCCATCTTATAGTTGTTAATGCATATGGATGAACTCCGAGTTTTCAATACTAATGTAATTGCAACCGTCACTTCAGAAACTATGTAATAAATGCTCC
>TRINITY_DN40874_c0_g4_i2 from sample A6 / Example unspliced isoform:TTTCAGTTGGTTAGTTAGCGTGGCGGCGGCCCCATCGATAGTTAAAACCTTCACCACGCCGCAACGGATCGAGGAATAACCAGGACGGATGGCAATTAACCTAAACATGAGTGATGGCAGTAACCTGAAGATGCCGCGCATAAGATCAGAGGCAGGGACTACATGTTTAGGTTAATTGCATAGATCAAAGGCAGGGATGA
AAAAGACTGAGAGGAGACCAGGTATTGACTATTTTGCTGTTTTTTATTGCAGGTTCCGAAGGAGTTAAGGTGTTAAGGTCCATGCACACACGGCCATGGAAGCGATGGAGCGCCGTCGGATTACAGGCGAGGGACAATACCAAGAAATAGTTTTGACGGGTTGATCCGTGCCAGCCACGGTTATATCTTCCAGTTATGCG
CGCTCCTCGCGCATgtgtgtatcagcgctgacagcttgcaaacttgctttgaacgtgaaatgcaatgcctctcagagccactcctttgttcaattctctcagttttttgtttaaattgcattgattttaatgcccgtctcagactttggaggaactgggtactatgttttagtcctcatttcttgatctgttattgattt
tagttcttttgttacaaactttatatattgtcttcgcagGTTACAGGGCAGTAGCAAGTTTTACCTATTTACTTGGACGTGGTCGAGAGGTCATACTTCAATAGCTCGGACAAGGTAAGGCTTTGATTGCCAGGACGATCTACAGGATCCTGGATCCCGTCATTCTCTGTACAATCGAACCTTGCCCTTGAAATTTATTC
TGTGTGTAACGTATCTGAGATCGAATCCGTTCTAATCTCCGCCTTTGGTAATCATATTTTTCATGCAACAGAATTTGGTAATCATATTCTTTTAAATTATATTCATCTCTACCCTGTCTTTAGAAGCCGCGGAACTTCTCGTGTTAAACCTTACATCATTCGCCAGCGAAATCTTAAACTAATGTGTATCGAATGATCTC
AGATTTTAGATCGATTTTAATCAGAGTTCCAAGGGGATTCGTGTTTTCCATTACTGATAGCGATCTCAGTTCCACAACAGCAATCTCAGATCTACTCCCAAAATCCGTGGCGTTCCCAGAAATTGTTATACGATTTTGATATTCGACTCTCTGTATGTCTATGTCTTTATTGATTGGCGTTCCGGAATCCAGCTGTCAAT
AGATCTTTAGTTATCTGTGTCTTCTCCAAAGAAGCAGGCGTTGCCAGAATACCCTAATCTTCAGCACACCGGCGCAAAATTTGGGTTAGAACAGACCTTTAAAAAATACATAAAAAAAGTAGTAAACATTGAGGCATTAGATCCATCTTATAGTTGTTAATGCATATGGATGAACTCCGAGTTTTCAATACTAATGTAAT
TGCAACCGTCACTTCAGAAACTATGTAATAAATGCTCC
Intron 5 GCAATGCCTC ... GTCTTCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 37.93 | 9 | 3 | 8 |
| A2 | 81.82 | 1 | 5 | 4 |
| A3 | 80 | 1 | 1 | 7 |
| A4 | 61.54 | 5 | 3 | 13 |
| A5 | 50 | 4 | 4 | 4 |
| A6 | 47.95 | 19 | 23 | 12 |
| A7 | 56.25 | 21 | 37 | 17 |
| A8 | 52.48 | 24 | 31 | 22 |
| A9 | 44.83 | 24 | 22 | 17 |
| A10 | 40.74 | 16 | 17 | 5 |
>TRINITY_DN40874_c0_g4_i5 from sample A6 / Example spliced isoformTTTCAGTTGGTTAGTTAGCGTGGCGGCGGCCCCATCGATAGTTAAAACCTTCACCACGCCGCAACGGATCGAGGAATAACCAGGACGGATGGCAATTAACCTAAACATGAGTGATGGCAGTAACCTGAAGATGCCGCGCATAAGATCAGAGGTTCCGAAGGAGTTAAGGTGTTAAGGTCCATGCACACACGGCCATGGAA
GCGATGGAGCGCCGTCGGATTACAGGCGAGGGACAATACCAAGAAATAGTTTTGACGGGTTGATCCGTGCCAGCCACGGTTATATCTTCCAGTTATGCGCGCTCCTCGCGCATGTGTGTATCAGCGCTGACAGCTTGCAAACTTGCTTTGAACGTGAAATGTTACAGGGCAGTAGCAAGTTTTACCTATTTACTTGGACG
TGGTCGAGAGGTCATACTTCAATAGCTCGGACAAGGTAAGGCTTTGATTGCCAGGACGATCTACAGGATCCTGGATCCCGTCATTCTCTGTACAATCGAACCTTGCCCTTGAAATTTATTCTGTGTGTAACGTATCTGAGATCGAATCCGTTCTAATCTCCGCCTTTGGTAATCATATTTTTCATGCAACAGAATTTGGT
AATCATATTCTTTTAAATTATATTCATCTCTACCCTGTCTTTAGAAGCCGCGGAACTTCTCGTGTTAAACCTTACATCATTCGCCAGCGAAATCTTAAACTAATGTGTATCGAATGATCTCAGATTTTAGATCGATTTTAATCAGAGTTCCAAGGGGATTCGTGTTTTCCATTACTGATAGCGATCTCAGTTCCACAACA
GCAATCTCAGATCTACTCCCAAAATCCGTGGCGTTCCCAGAAATTGTTATACGATTTTGATATTCGACTCTCTGTATGTCTATGTCTTTATTGATTGGCGTTCCGGAATCCAGCTGTCAATAGATCTTTAGTTATCTGTGTCTTCTCCAAAGAAGCAGGCGTTGCCAGAATACCCTAATCTTCAGCACACCGGCGCAAAA
TTTGGGTTAGAACAGACCTTTAAAAAATACATAAAAAAAGTAGTAAACATTGAGGCATTAGATCCATCTTATAGTTGTTAATGCATATGGATGAACTCCGAGTTTTCAATACTAATGTAATTGCAACCGTCACTTCAGAAACTATGTAATAAATGCTCC
>TRINITY_DN40874_c0_g4_i2 from sample A6 / Example unspliced isoform:TTTCAGTTGGTTAGTTAGCGTGGCGGCGGCCCCATCGATAGTTAAAACCTTCACCACGCCGCAACGGATCGAGGAATAACCAGGACGGATGGCAATTAACCTAAACATGAGTGATGGCAGTAACCTGAAGATGCCGCGCATAAGATCAGAGGCAGGGACTACATGTTTAGGTTAATTGCATAGATCAAAGGCAGGGATGA
AAAAGACTGAGAGGAGACCAGGTATTGACTATTTTGCTGTTTTTTATTGCAGGTTCCGAAGGAGTTAAGGTGTTAAGGTCCATGCACACACGGCCATGGAAGCGATGGAGCGCCGTCGGATTACAGGCGAGGGACAATACCAAGAAATAGTTTTGACGGGTTGATCCGTGCCAGCCACGGTTATATCTTCCAGTTATGCG
CGCTCCTCGCGCATGTGTGTATCAGCGCTGACAGCTTGCAAACTTGCTTTGAACGTGAAATgcaatgcctctcagagccactcctttgttcaattctctcagttttttgtttaaattgcattgattttaatgcccgtctcagactttggaggaactgggtactatgttttagtcctcatttcttgatctgttattgattt
tagttcttttgttacaaactttatatattgtcttcgcagGTTACAGGGCAGTAGCAAGTTTTACCTATTTACTTGGACGTGGTCGAGAGGTCATACTTCAATAGCTCGGACAAGGTAAGGCTTTGATTGCCAGGACGATCTACAGGATCCTGGATCCCGTCATTCTCTGTACAATCGAACCTTGCCCTTGAAATTTATTC
TGTGTGTAACGTATCTGAGATCGAATCCGTTCTAATCTCCGCCTTTGGTAATCATATTTTTCATGCAACAGAATTTGGTAATCATATTCTTTTAAATTATATTCATCTCTACCCTGTCTTTAGAAGCCGCGGAACTTCTCGTGTTAAACCTTACATCATTCGCCAGCGAAATCTTAAACTAATGTGTATCGAATGATCTC
AGATTTTAGATCGATTTTAATCAGAGTTCCAAGGGGATTCGTGTTTTCCATTACTGATAGCGATCTCAGTTCCACAACAGCAATCTCAGATCTACTCCCAAAATCCGTGGCGTTCCCAGAAATTGTTATACGATTTTGATATTCGACTCTCTGTATGTCTATGTCTTTATTGATTGGCGTTCCGGAATCCAGCTGTCAAT
AGATCTTTAGTTATCTGTGTCTTCTCCAAAGAAGCAGGCGTTGCCAGAATACCCTAATCTTCAGCACACCGGCGCAAAATTTGGGTTAGAACAGACCTTTAAAAAATACATAAAAAAAGTAGTAAACATTGAGGCATTAGATCCATCTTATAGTTGTTAATGCATATGGATGAACTCCGAGTTTTCAATACTAATGTAAT
TGCAACCGTCACTTCAGAAACTATGTAATAAATGCTCC