NA ----> NA

Intron 1 GTGCATATTT ... GGATTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	33.33	3	2	1
A2	23.08	10	5	1
A3	21.74	9	4	1
A4	34.73	6	3	3.4
A5	33.33	5	5	0
A6	21.79	70	21	18
A7	21.43	77	31	11
A8	17.3	87	20	16.4
A9	19.57	104	31	19.6
A10	20	62	17	14

>TRINITY_DN36121_c0_g1_i2 from sample A6 / Example spliced isoform

CCGAAATTCAAAGGAGATTAAAAGTATTCAAATAGAGCGCTCTCCGGACACACAAATATTTCAAGAGCACCTCTGTGAAATATGTAACAAGGCAAAAGCACGATTTAATGGTCAGGAATGGGTGACCGAGGATCATCACTTGTACACACAGTTCCGGGACAGTCTCTTCTTTTCCTTGCGTGAGGCAGCGGTGCCGGTCC
CAACACAGAGAGCAAGACGGGGAAAGTACAGGTGCCCAAGGTTGCAGTTCTTGCATGCTTTCATAAATGTCCAATAGTTGTTGTTGAGAATTTGGATAGTCAAGTGACTTCGTGACAATCCACTGTGAACATTCACACATGGAAGCCCATTAGGAACCAATTGACAAATGGAGATTATAATGTTCTGAAGATCTAAAATA
AGGGTATGATATGTTTTAAAATTATGCTTACAATATCATAAACTGGGAACCCATTCTCAGTCACAAGTGCATAATCATGCTGGTAAGATCCTGCCAAAATTCACAAAAGCAACATAAGAGAAATAGTTATTAGTTATAATAACAAGTTTGAATATTTTATATATTTAACAAATACTATATAATGTAACAAATGACAAAAA
TGTATTTACAGTTGTAGAATAACATCTTTCATATAAAAAAGTATGTATGTTTTAGGCACATTTCTACTATCATTTGAGGAATGCTAGACCTCAATGTTTTGCATTCCCCATGAAACAGTCCAGTCAAATATTGCTCCTCATGGATTACCTGTATAGAATAAAATGCTATCATCTCAACTTTTATGATGCACCTTTATTTC
ATAGTGGTTCTTGTGAATGTTAATG

>TRINITY_DN36121_c0_g1_i3 from sample A6 / Example unspliced isoform:

CCGAAATTCAAAGGAGATTAAAAGTATTCAAATAGAGCGCTCTCCGGACACACAAATATTTCAAGAGCACCTCTGTGAAATATGTAACAAGGCAAAAGCACGATTTAATGGTCAGGAATGGGTGACCGAGGATCATCACTTGTACACACAGTTCCGGGACAGTCTCTTCTTTTCCTTGCGTGAGGCAGCGGTGCCGGTCC
CAACACAGAGAGCAAGACGGgtgcatatttaacgatgattctggatttgcagGGAAAGTACAGGTGCCCAAGGTTGCAGTTCTTGCATGCTTTCATAAATGTCCAATAGTTGTTGTTGAGAATTTGGATAGTCAAGTGACTTCGTGACAATCCACTGTGAACATTCACACATGGAAGCCCATTAGGAACCAATTGACAAA
TGGAGATTATAATGTTCTGAAGATCTAAAATAAGGGTATGATATGTTTTAAAATTATGCTTACAATATCATAAACTGGGAACCCATTCTCAGTCACAAGTGCATAATCATGCTGGTAAGATCCTGCCAAAATTCACAAAAGCAACATAAGAGAAATAGTTATTAGTTATAATAACAAGTTTGAATATTTTATATATTTAA
CAAATACTATATAATGTAACAAATGACAAAAATGTATTTACAGTTGTAGAATAACATCTTTCATATAAAAAAGTATGTATGTTTTAGGCACATTTCTACTATCATTTGAGGAATGCTAGACCTCAATGTTTTGCATTCCCCATGAAACAGTCCAGTCAAATATTGCTCCTCATGGATTACCTGTATAGAATAAAATGCTA
TCATCTCAACTTTTATGATGCACCTTTATTTCATAGTGGTTCTTGTGAATGTTAATG

Intron 2 GTGCATATTT ... GAAAGTACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	33.33	5	2	3
A2	23.08	10	5	1
A3	24.14	11	4	3
A4	33.33	6	3	3
A5	33.33	5	5	0
A6	24.07	82	21	31
A7	22.87	86	31	20
A8	18.8	95	20	24
A9	20.85	112	31	28
A10	20.73	65	17	17

>TRINITY_DN38051_c0_g1_i1 from sample A8 / Example spliced isoform

ATTCAAAGTAGATTAAAAGTATTCAAATAGAGCGCTCTCCGGACACACATATATTTCAAGAGCACCTCTGTGAAATATGTAACAAGGCAAAAGCACGATTTAATGGTCAGGAATGGGTGACCGAGGATCATCACTTGTACACACAGTTCCGGGACAGTCTCTTCTTTTCCTTGCGTGAGGCAGCGGTGCCGGTCCCAACA
CAGAGAGCAAGACGGGTGCCCAAGGTTGCAGTTCTTGCATGCTTTCATAAATGTCCAATAGTTGTTGTTGAGAATTTGGATAGTCAAGTGACTTCGTGACAATCCACTGTGAACATTCACACATGGAAGCCCATTAGGAACCAATTGACAAATGGAGATTATAATGTTCTGAAGATCTAAAATAAGGGTATGATATGTTT
TAAAATTATGCTTACAATATCATAAACTGGGAACCCATTCTCAGTCACAAGTGCATAATCATGCTGGTAAGATCCTGCCAAAATTCACAAAAGCAACATAAGAGAAATAGTTATTAGTTATAATAACAAGTTTGAATATTTTATATATTTAACAAATACTATATAATGTAACAAATGACAAAAATGTATTTACAGTTGTA
GAATAACATCTTTCATATAAAAAAGTATGTATGTTTTAGGCACATTTCTACTATCATTTGAGGAATGCTAGACCTCAATGTTTTGCATTCCCCATGAAAAATTCCAGTCAAATATTGCTCCTCATGGATTACCTGTATAGAATAAAATGCTATCATCTCAACTTTTATGATGCAC

>TRINITY_DN38051_c0_g1_i3 from sample A8 / Example unspliced isoform:

ATTCAAAGTAGATTAAAAGTATTCAAATAGAGCGCTCTCCGGACACACATATATTTCAAGAGCACCTCTGTGAAATATGTAACAAGGCAAAAGCACGATTTAATGGTCAGGAATGGGTGACCGAGGATCATCACTTGTACACACAGTTCCGGGACAGTCTCTTCTTTTCCTTGCGTGAGGCAGCGGTGCCGGTCCCAACA
CAGAGAGCAAGACGGgtgcatatttaacgatgattctggatttgcagggaaagtacagGTGCCCAAGGTTGCAGTTCTTGCATGCTTTCATAAATGTCCAATAGTTGTTGTTGAGAATTTGGATAGTCAAGTGACTTCGTGACAATCCACTGTGAACATTCACACATGGAAGCCCATTAGGAACCAATTGACAAATGGAG
ATTATAATGTTCTGAAGATCTAAAATAAGGGTATGATATGTTTTAAAATTATGCTTACAATATCATAAACTGGGAACCCATTCTCAGTCACAAGTGCATAATCATGCTGGTAAGATCCTGCCAAAATTCACAAAAGCAACATAAGAGAAATAGTTATTAGTTATAATAACAAGTTTGAATATTTTATATATTTAACAAAT
ACTATATAATGTAACAAATGACAAAAATGTATTTACAGTTGTAGAATAACATCTTTCATATAAAAAAGTATGTATGTTTTAGGCACATTTCTACTATCATTTGAGGAATGCTAGACCTCAATGTTTTGCATTCCCCATGAAAAATTCCAGTCAAATATTGCTCCTCATGGATTACCTGTATAGAATAAAATGCTATCATC
TCAACTTTTATGATGCAC