NA ----> NA

Intron 1 GTCTTGCAGC ... GATCTGAAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	11.72	15.6	3.6	2
A2	15.45	7.2	2.4	1
A3	14.41	38.8	11.4	6
A4	0	6.8	2.4	0
A5	0	3.6	1.2	0
A6	21.49	95.4	15.6	26
A7	15.94	101.6	26.4	19
A8	17.81	68	14.4	14.6
A9	17.07	92.8	15.6	18.6
A10	20.6	65.4	15.4	16

>TRINITY_DN40636_c2_g1_i1 from sample A8 / Example spliced isoform

TGCTGAGAGATTCTGAAGGAGGAGAAAGAGCTCAAATTCTTCAAAAGCAAGGGTGAAGGAAGGAAAGCTTATGGCAATGGAGGAAGGATGCACACCTATGTCCATGGTTGATCAGTTTGATCTGGCAATGCATCCTCCACTGACGTTGCATAAGCATCCAATGTGTGCAGAAATAATAGAACTTTTCCAGAAATGTCATC
AGGAGCATCCCATTGCAAAATTTTGGGGTGAATGTACTGACCTGAAGCTGAAGCTTGATCAGTGCTTTCGTCAGGAAAAAGCAATAAAAAGAAAGGCCAATTTCGAAGAAAGCAAGAGATTCAAGGAGAGGCTGCGTGCTAATAAAGCTGCAATGGATACTTCTAATTTGGAGTCATCTTCACCTTCTCAATCTGCAGAA
TAATTGTAACATATTGCACGTGTTAAAGGAGCACAAGATCGGTTTGATTGTCTTTTTTGTATTTTGTCTATCATCTTAAAAAGGAGCTCAATTTTGACTCAATCCTATATTCAATTCCATTGGAGGAAGAACTCTCCTGAACTATAATAATATTGTTTATGGCAAAGTTGCTTTCCAAGTGGGTAACATTTCTTTTGGCC
ACAACAGCCTTTGTTGAGATAATTGGCAGTGATGATGGGGGCATACTATACTTACTGACAATGAAAACCTGTCTAATTATGTTTGGTAACATAAAGTTATAATAAGTTGAATATGCTATACCTCGTGCTTGAAGATTAATTTTAAGCACAGTGAATGGTCGGAAATAAAAAATCTATGGTTCGCACCCCCAATGGCTTTC
TCACAGTGATAGAATGCTGAAATTGCTGCAGCCATTGTTCTGAGAGTTGCGCTTTTTTGACTATATAGTTACAATATTTTGATGTATGTTTGGAATGCTTTGATCAATGTTTTTAGTGTGAA

>TRINITY_DN40636_c2_g1_i2 from sample A8 / Example unspliced isoform:

AAATTATGCAAAGTGGGTGAGAATTAATGTAAAGACTAAAACATCGTGCAGAAAATCTGTTTGTCCGTATGCAACACGATCGATTGTCACGAACTTCGCCACTTACCAACTTAAACAAACTGATTTCCGAGCTGGTCGTCTACTCCATATTCACTTCTGGGAAAGATCATAGAGAGGCCAAGTTCTGAATTTTTTTACAG
GTTGATCAGTTTGATCTGGCAATGCATCCTCCACTGACGTTGCATAAGCATCCAATGTGTGCAGAAgtcttgcagctggagttctgacgaccatgagacttggagcaacaacaaggagaaggatctgtgatctgaaagATAATAGAACTTTTCCAGAAATGTCATCAGGAGCATCCCATTGCAAAATTTTGGGGTGAATG
TACTGACCTGAAGCTGAAGCTTGATCAGTGCTTTCGTCAGGAAAAAGCAATAAAAAGAAAGGCCAATTTCGAAGAAAGCAAGAGATTCAAGGAGAGGCTGCGTGCTAATAAAGCTGCAATGGATACTTCTAATTTGGAGTCATCTTCACCTTCTCAATCTGCAGAATAATTGTAACATATTGCACGTGTTAAAGGAGCAC
AAGATCGGTTTGATTGTCTTTTTTGTATTTTGTCTATCATCTTAAAAAGGAGCTCAATTTTGACTCAATCCTATATTCAATTCCATTGGAGGAAGAACTCTCCTGAACTATAATAATATTGTTTATGGCAAAGTTGCTTTCCAAGTGGGTAACATTTCTTTTGGCCACAACAGCCTTTGTTGAGATAATTGGCAGTGATG
ATGGGGGCATACTATACTTACTGACAATGAAAACCTGTCTAATTATGTTTGGTAACATAAAGTTATAATAAGTTGAATATGCTATACCTCGTGCTTGAAGATTAATTTTAAGCACAGTGAATGGTCGGAAATAAAAAATCTATGGTTCGCACCCCCAATGGCTTTCTCACAGTGATAGAATGCTGAAATTGCTGCAGCCA
TTGTTCTGAGAGTTGCGCTTTTTTGACTATATAGTTACAATATTTTGATGTATGTTTGGAATGCTTTGATCAATGTTTTTAGTGTGAA

Intron 2 GTGAGTTCAG ... GGCTTTATAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	16.67	5	1	1
A2	15.15	14	4	1
A3	25	12	6	2
A4	60	3	2	7
A5	30	7	0	6
A6	21.67	94	23	29
A7	15.41	118	13	30
A8	15.61	100	12	25
A9	14.62	108	20	17
A10	14.59	79	13	14

>TRINITY_DN66695_c0_g1_i3 from sample A4 / Example spliced isoform

GTAAAGACTAAAACATCGTGCAGAAAATCTGTTTGTCCGTATGCAACACGATCGATTGTCACGAACTTCGCCACTTACCAACTTAAACAAACTGATTTCCGAGCTGGTCGTCTACTCCATATTCACTTCTGGGAAAGATCATAGAGAGGCCAAGTTCTGAATTTTTTTACAGGTTGATCAGTTTGATCTGGCAATGCATC
CTCCACTGACGTTGCATAAGCATCCAATGTGTGCAGAAATAATAGAACTTTTCCAGAAATGTCATCAGGAGCATCCCATTGCAAAATTTTGGGGTGAATGTACTGACCTGAAGCTGAAGCTTGATCAGTGCTTTCGTCAGGAAAAAGCAATAAAAAGAAAGGCCAATTTCGAAGAAAGCAAGAGATTCAAGGAGAGGCTG
CGTGCTAATAAAGCTGCAATGGATACTTCTAATTTGGAGTCATCTTCACCTTCTCAATCTGCAGAATAATTGTAACATATTGCACGTGTTAAAGGAGCACAAGATCGGTTTGATTGTCTTTTTTGTATTTTGTCTATCATCTTAAAAAGGAGCTCAATTTTGACTCAATCCTATATTCAATTCCATTGGAGGAAGAACTC
TCCTGAACTATAATAATATTGTTTATGGCAAAGTTGCTTTCCAAGTGGGTAACATTTCTTTTGGCCACAACAGCCTTTGTTGAGATAATTGGCAGTGATGATGGGGGCATACTATACTTACTGACAA

>TRINITY_DN66695_c0_g1_i1 from sample A4 / Example unspliced isoform:

GTAAAGACTAAAACATCGTGCAGAAAATCTGTTTGTCCGTATGCAACACGATCGATTGTCACGAACTTCGCCACTTACCAACTTAAACAAACTGATTTCCGAGCTGGTCGTCTACTCCATATTCACTTCTGGGAAAGATCATAGAGAGGCCAAGTTCTGAATTTTTTTACAGGTTGATCAGTTTGATCTGGCAATGCATC
CTCCACTGACGTTGCATAAGCATCCAATGTGTGCAGAAATAATAGAACTTTTCCAGAAATGTCATCAGGAGCATCCCATTGCAAAATTTTGGGGTGAATGTACTGACCTGAAGCTGAAGCTTGATCAGTGCTTTCGTCAGGAAgtgagttcagtgtttacattttacctgatcttttcacaatttttttcttttctttta
gagctgagcctaagcagtttatttttccttgtttcttttccaattagacattcacataattgttacattgatgtttttggctttatagAAAGCAATAAAAAGAAAGGCCAATTTCGAAGAAAGCAAGAGATTCAAGGAGAGGCTGCGTGCTAATAAAGCTGCAATGGATACTTCTAATTTGGAGTCATCTTCACCTTCTC
AATCTGCAGAATAATTGTAACATATTGCACGTGTTAAAGGAGCACAAGATCGGTTTGATTGTCTTTTTTGTATTTTGTCTATCATCTTAAAAAGGAGCTCAATTTTGACTCAATCCTATATTCAATTCCATTGGAGGAAGAACTCTCCTGAACTATAATAATATTGTTTATGGCAAAGTTGCTTTCCAAGTGGGTAACAT
TTCTTTTGGCCACAACAGCCTTTGTTGAGATAATTGGCAGTGATGATGGGGGCATACTATACTTACTGACAA