sp|F4J8V5|AT13B_ARATH ----> Autophagy-related protein 13b
Intron 1 GTAAGGGGTT ... CACTGCATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.24 | 19 | 22 | 31 |
| A2 | 76.47 | 4 | 10 | 16 |
| A3 | 71.43 | 8 | 19 | 21 |
| A4 | 85.71 | 3 | 16 | 20 |
| A5 | 60.78 | 10 | 8 | 23 |
| A6 | 73.33 | 2 | 5 | 6 |
| A7 | 55.56 | 2 | 3 | 2 |
| A8 | 66.67 | 1 | 1 | 3 |
| A9 | 100 | 0 | 1 | 3 |
| A10 | 57.89 | 4 | 5 | 6 |
>TRINITY_DN109607_c0_g1_i2 from sample A1 / Example spliced isoformTTTTAATCTTTACTCTGAAAGCCTTTCCAATCTAAGGATAAAACAGGCGTGGGACCAAATTGCTTAGGCAATTGAAGCCGTGCCTGTTTTTAAGGCGTCGGATCTGCAGTTGATATATCTGGGAGGAAATCTGGAGAACGGAGATGCTTTTGCTTTTGCTGTTGCTGCTGTCCCAGATTGTGCAGCATGCGGTCTGCATT
GACCATGACAAGATCCTCCAGGTCTTGAGCTGATGAACTGCATCTGGTGACATCACAAACCCTATGGACTGTCTGTGTTGTGCTTGACTTTGCTATTTAATTGCAAAGGGGAGGAGTCTTGGTTGTTTATTACTACCGTTTGCATTGAGCTGCACCATGATTGCGTTCTTGGCGATGAATGCGAATCCAAGAGAGTCAAT
GAATTTTGTGGTTGAATTGTATAGCAAATCTTTTATGGGCATGTTTGAAGAATACATTGTAGATACAGCTCGGGAAGTCTTCATAGTTAACCTAACAATTGAAGGTTCGCAGATGTCATGTGAGGAGGCTGGGTGAATAACATATTTTGGTATTGGGATACATTGATGCCTTTGAAATTATAACCTGGCTCAAATTGAAT
GCTAACGTGGGGTCACTTCTGGTTCAGTAGCGTTGTCAATCTGAGCTGAAACCGTGCTTGTTGTGTGGTGTTTTTTTGGATGTGAAATCGAAAATGTCTTCACAAAGCACTTCCCAGGGTGAACCGGCCAAAATTGAGCAGATACTAAATGAGTTTTTTGCTAAGAGTTTGCATATAATACTGGACTCGAGGATTCCGTG
TGGTAGTTCTCATAATGGGGAATATTCTGGGGTATCATCCTCGATTTCCTCATCTTCATCAAGTCTCAGAACGAGGGATAAATGGTTTAATTTAGCTCTGGGAGAAAGCCCGGCTTCTTTTGAGAACATGGAGCTATGGCGGCGGAGCATGTCAGGGCCCATGATAGTGGATGTGATCCTTTTACGAGCTTCTGATCCAG
GAGATGAAACTTCAACTATACTGCCAAAGAAACAAAGTTTCGCCAGGAATGCATCCTGTAAAGGAGGTCATCTGAATTTCTTGAATGCTGGAGAAGAGTCTCCACCAGAAGTGTTAGATGTTGAAATCCTACTAGAAAGATGGAGAGTGCAATATGAATATAGGAAGCCCAGTACACGAGATATTCCTTTTGGCAGGACA
TCTGTTGGGAGTGGAATATCAAGGCGGGAGGATGTCAAGAAGGCAGGTAGCAATGTTGGGCATGGCAAAGGACGCAGTGTGTTAGGAACAGGAGAGAGTGAACTAGGAGCGGGATCTGCCCAAATTTCTTCTCATACTGTGGAAGTGCCTGTTGCGTATAAGAAAACATATAAGAGAACAGTTATATTGCTACGTTCTCT
TTATTGCACTTGTCGACTTTTACCAGCCTATCGGCTTTTCCGACATGATAATTCTTCTAGCAACAATTGCAACTTTACTATTGCTTACAGGGTTTCATTTTCACCTGACCCTCTATCTCGTGTTGATGAGGCTGAAATGCATCCCTACAACTTTACCCCAGTAGAGACTCCCTGTGGAAGACTTTGTTTGTCAGTGTTAT
ATCGTCCAATTGCACCAGATGCTTCTCTTGAGGCTTCTGTTCCTTTACTGCCACGGATTATCACAGACTATGTTAGAAGCCCCTCTGCAGATCCTTCAAAGAGGTTCCCTG
>TRINITY_DN109607_c0_g1_i1 from sample A1 / Example unspliced isoform:ATTGCTTAGGTATTCCTTATTTATTTATCAGATCTATCGCAAACATACATGCGGGCGAATCATTATTTTTTTCCTATTTCTACCCATTACCCACAATGCATTCATCTCCTCTGGAAATTTATTTTATAAAATTTTTCCAGGCAATTGAAGCCGTGCCTGTTTTTAAGGCGTCGGATCTGCAGTTGATATATCTGGGAGGA
AATCTGGAGAACGGAGATGCTTTTGCTTTTGCTGTTGCTGCTGTCCCAGATTGTGCAGCATGCGGTCTGCATTGACCATGACAAGgtaaggggtttttactggagcttacctctcttatattctcatactgatggcaatttcacaatcactactctgattttccgcaaaattcaatccgtagtgggatcagggtgttaaa
tggtccgtttccccaactggttacatctctcgagcggagcttcgttctgtgggcatttcatgggctatcaccgccacgaaactattggactaaattctcatttcaattcaattgcaaatttttcaagggcttattcggccccataagaaatagcaaattccaatttgagtgccctataagcaaattgcttatagactctt
tgtaaagtggaaattttgtgtgaagcatcggaattttgaattatttaattaatttatgaagggttatgcaactccactcggagaaagagagttcagttgttttgattaaaggcaatttttgctcgactcaagctttcagtggtaattgagatcgaggtgtctgtatgctttgtgggttctcttccttgtgattgttttct
ttgtgataccttcttaaatggaaggcttttaaaatcgcagtagcagattcttgaagggttatggatattatgttctgcgttaatatgactactaccactgcatagATCCTCCAGGTCTTGAGCTGATGAACTGCATCTGGTGACATCACAAACCCTATGGACTGTCTGTGTTGTGCTTGACTTTGCTATTTAATTGCAAA
GGGGAGGAGTCTTGGTTGTTTATTACTACCGTTTGCATTGAGCTGCACCATGATTGCGTTCTTGGCGATGAATGCGAATCCAAGAGAGTCAATGAATTTTGTGGTTGAATTGTATAGCAAATCTTTTATGGGCATGTTTGAAGAATACATTGTAGATACAGCTCGGGAAGTCTTCATAGTTAACCTAACAATTGAAGGTT
CGCAGATGTCATGTGAGGAGGCTGGGTGAATAACATATTTTGGTATTGGGATACATTGATGCCTTTGAAATTATAACCTGGCTCAAATTGAATGCTAACGTGGGGTCACTTCTGGTTCAGTAGCGTTGTCAATCTGAGCTGAAACCGTGCTTGTTGTGTGGTGTTTTTTTGGATGTGAAATCGAAAATGTCTTCACAAAG
CACTTCCCAGGGTGAACCGGCCAAAATTGAGCAGATACTAAATGAGTTTTTTGCTAAGAGTTTGCATATAATACTGGACTCGAGGATTCCGTGTGGTAGTTCTCATAATGGGGAATATTCTGGGGTATCATCCTCGATTTCCTCATCTTCATCAAGTCTCAGAACGAGGGATAAATGGTTTAATTTAGCTCTGGGAGAAA
GCCCGGCTTCTTTTGAGAACATGGAGCTATGGCGGCGGAGCATGTCAGGGCCCATGATAGTGGATGTGATCCTTTTACGAGCTTCTGATCCAGGAGATGAAACTTCAACTATACTGCCAAAGAAACAAAGTTTCGCCAGGAATGCATCCTGTAAAGGAGGTCATCTGAATTTCTTGAATGCTGGAGAAGAGTCTCCACCA
GAAGTGTTAGATGTTGAAATCCTACTAGAAAGATGGAGAGTGCAATATGAATATAGGAAGCCCAGTACACGAGATATTCCTTTTGGCAGGACATCTGTTGGGAGTGGAATATCAAGGCGGGAGGATGTCAAGAAGGCAGGTAGCAATGTTGGGCATGGCAAAGGACGCAGTGTGTTAGGAACAGGAGAGAGTGAACTAGG
AGCGGGATCTGCCCAAATTTCTTCTCATACTGTGGAAGTGCCTGTTGCGTATAAGAAAACATATAAGAGAACAGTTATATTGCTACGTTCTCTTTATTGCACTTGTCGACTTTTACCAGCCTATCGGCTTTTCCGACATGATAATTCTTCTAGCAACAATTGCAACTTTACTATTGCTTACAGGGTTTCATTTTCACCTG
ACCCTCTATCTCGTGTTGATGAGGCTGAAATGCATCCCTACAACTTTACCCCAGTAGAGACTCCCTGTGGAAGACTTTGTTTGTCAGTGTTATATCGTCCAATTGCACCAGATGCTTCTCTTGAGGCTTCTGTTCCTTTACTGCCACGGATTATCACAGACTATGTTAGAAGCCCCTCTGCAGATCCTTCAAAGAGGTTC
CCTG
Intron 2 GTAAGGGGTT ... ATTTATGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 61.9 | 8 | 22 | 4 |
| A2 | 77.78 | 2 | 10 | 4 |
| A3 | 54.55 | 10 | 19 | 5 |
| A4 | 63.64 | 8 | 16 | 12 |
| A5 | 73.33 | 2 | 8 | 3 |
| A6 | 66.67 | 2 | 5 | 3 |
| A7 | 33.33 | 3 | 3 | 0 |
| A8 | 14.29 | 3 | 1 | 0 |
| A9 | 100 | 0 | 1 | 1 |
| A10 | 22.58 | 12 | 5 | 2 |
>TRINITY_DN102497_c0_g1_i3 from sample A3 / Example spliced isoformCGTCACTCCTTTTCATTCTTCCCAAATCTTTATTCCCTTTGAACTTTTTAATCTTTACTCTGAAAGCCTTTCCAATCTAAGGATAAAACAGGCGTGGGACCAAATTGCTTAGGCAATTGAAGCCGTGCCTGTTTTTAAGGCGTCGGATCTGCAGTTGATATATCTGGGAGGAAATCTGGAGAACGGAGATGCTTTTGCTT
TTGCTGTTGCTGCTGTCCCAGATTGTGCAGCATGCGGTCTGCATTGACCATGACAAGGGTTATGCAACTCCACTCGGAGAAAGAGAGTTCAGTTGTTTTGATTAAAGGCAATTTTTGCTCGACTCAAGCTTTCAGTGGTAATTGAGATCGAGGTGTCTGTATGCTTTGTGGGTTCTCTTCCTTGTGATTGTTTTCTTTGT
GATACCTTCTTAAATGGAAGGCTTTTAAAATCGCAGTAGCAGATTCTTGAAGGGTTATGGATATTATGTTCTGCGTTAATATGACTACTACCACTGCATAGATCCTCCAGGTCTTGAGCTGATGAACTGCATCTGGTGACATCACAAACCCTATGGACTGTCTGTGTTGTGCTTGACTTTGCTATTTAATTGCAAAGGGG
AGGAGTCTTGGTTGTTTATTACTACCGTTTGCATTGAGCTGCACCATGATTGCGTTCTTGGCGATGAATGCGAATCCAAGAGAGTCAATGAATTTTGTGGTTGAATTGTATAGCAAATCTTTTATGGGCATGTTTGAAGAATACATTGTAGATACAGCTCGGGAAGTCTTCATAGTTAACCTAACAATTGAAGGTTCGCA
GATGTCATGTGAGGAGGCTGGGTGAATAACATATTTTGGTATTGGGATACATTGATGCCTTTGAAATTATAACCTGGCTCAAATTGAATGCTAACGTGGGGTCACTTCTGGTTCAGTAGCGTTGTCAATCTGAGCTGAAACCGTGCTTGTTGTGTGGTGTTTTTTTGGATGTGAAATCGAAAATGTCTTCACAAAGCACT
TCCCAGGGTGAACCGGCCAAAATTGAGCAGATACTAAATGAGTTTTTTGCTAAGAGTTTGCATATAATACTGGACTCGAGGATTCCGTGTGGTAGTTCTCATAATGGGGAATATTCTGGGGTATCATCCTCGATTTCCTCATCTTCATCAAGTCTCAGAACGAGGGATAAATGGTTTAATTTAGCTCTGGGAGAAAGCCC
GGCTTCTTTTGAGAACATGGAGCTATGGCGGCGGAGCATGTCAGGGCCCATGATAGTGGATGTGATCCTTTTACGAGCTTCTGATCCAGGAGATGAAACTTCAACTATACTGCCAAAGAAACAAAGTTTCGCCAGGAATGCATCCTGTAAAGGAGGTCATCTGAATTTCTTGAATGCTGGAGAAGAGTCTCCACCAGAAG
TGTTAGATGTTGAAATCCTACTAGAAAGATGGAGAGTGCAATATGAATATAGGAAGCCCAGTACACGAGATATTCCTTTTGGCAGGACATCTGTTGGGAGTGGAATATCAAGGCGGGAGGATGTCAAGAAGGCAGGTAGCAATGTTGGGCATGGCAAAGGACGCAGTGTGTTAGGAACAGGAGAGAGTGAACTAGGAGCG
GGATCTGCCCAAATTTCTTCTCATACTGTGGAAGTGCCTGTTGCGTATAAGAAAACATATAAGAGAACAGTTATATTGCTACGTTCTCTTTATTGCACTTGTCGACTTTTACCAGCCTATCGGCTTTTCCGACATGATAATTCTTCTAGCAACAATTGCAACTTTACTATTGCTTACAGGGTTTCATTTTCACCTGACCC
TCTATCTCGTGTTGATGAGGCTGAAATGCATCCCTACAACTTTACCCCAGTAGAGACTCCCTGTGGAAGACTTTGTTTGTCAGTGTTATATCGTCCAATTGCACCAGATGCTTCTCTTGAGGCTTCTGTTCCTTTACTGCCACGGATTATCACAGACTATGTTAGAAGCCCCTCTGCAGATCCTTCAAAGAGGTTCCCTG
GTGATATCACTGTAAAATCAGGGAAGAAAGAAGCATCTACAACTTCCCTCCCTTTGTCAGCACCAGGATCCCCTGCTTGTACAGCTTCTGTAAGAAGGCGCAGTTGGAATGGCAGTCCAGGCAAAGTGCTTCCTTCACCACCATCTTCCCTATCCCCTTCACATCGCCTCAGCATATCTCCTTCCCCTTCCCCTTCCTAC
TCATATGGTCATGGTTCTCCTTCTACATTACCTGCTTCTTGTCCTGATGGTCCTCAACAATACATGCGAGATCACTCTCTATCACCAAGTAGTTCTCCTATGGATCGTCTACATACCCAAATTTCTTCCCGTCAATCTCATTGCCACCAAAAAGCTGCTAGTTTTGATGAACATTGGTTATTGCCTCCATTTTCACCATC
TCCATCACCCTCACCACCAACACATTTACCAGAGGGTAATCATGCAGACCCTTTTGCACATTCTGGAAGTGCT
>TRINITY_DN102497_c0_g1_i4 from sample A3 / Example unspliced isoform:CGTCACTCCTTTTCATTCTTCCCAAATCTTTATTCCCTTTGAACTTTTTAATCTTTACTCTGAAAGCCTTTCCAATCTAAGGATAAAACAGGCGTGGGACCAAATTGCTTAGGCAATTGAAGCCGTGCCTGTTTTTAAGGCGTCGGATCTGCAGTTGATATATCTGGGAGGAAATCTGGAGAACGGAGATGCTTTTGCTT
TTGCTGTTGCTGCTGTCCCAGATTGTGCAGCATGCGGTCTGCATTGACCATGACAAGgtaaggggtttttactggagcttacctctcttatattctcatactgatggcaatttcacaatcactactctgattttccgcaaaattcaatccgtagtgggatcagggtgttaaatggtccgtttccccaactggttacatct
ctcgagcggagcttcgttctgtgggcatttcatgggctatcaccgccacgaaactattggactaaattctcatttcaattcaattgcaaatttttcaagggcttattcggccccataagaaatagcaaattccaatttgagtgccctataagcaaattgcttatagactctttgtaaagtggaaattttgtgtgaagcat
cggaattttgaattatttaattaatttatgaagGGTTATGCAACTCCAC
Intron 3 GTAAGGGGTT ... CAATCCGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 68.6 | 10 | 21.9 | 9.4 |
| A2 | 34.48 | 19 | 10 | 12.4 |
| A3 | 54.29 | 16 | 19 | 13.9 |
| A4 | 66.67 | 8 | 16 | 21.4 |
| A5 | 61.31 | 5 | 7.9 | 12.1 |
| A6 | 50 | 5 | 5 | 5.6 |
| A7 | 42.86 | 4 | 3 | 7.4 |
| A8 | 50 | 1 | 1 | 0 |
| A9 | 14.29 | 6 | 1 | 3.7 |
| A10 | 50 | 5 | 5 | 7.6 |
>TRINITY_DN109607_c0_g1_i4 from sample A1 / Example spliced isoformTTTTAATCTTTACTCTGAAAGCCTTTCCAATCTAAGGATAAAACAGGCGTGGGACCAAATTGCTTAGGCAATTGAAGCCGTGCCTGTTTTTAAGGCGTCGGATCTGCAGTTGATATATCTGGGAGGAAATCTGGAGAACGGAGATGCTTTTGCTTTTGCTGTTGCTGCTGTCCCAGATTGTGCAGCATGCGGTCTGCATT
GACCATGACAAGTGGGATCAGGGTGTTAAATGGTCCGTTTCCCCAACTGGTTACATCTCTCGAGCGGAGCTTCGTTCTGTGGGCATTTCATGGGCTATCACCGCCACGAAACTATTGGACTAAATTCTCATTTCAATTCAATTGCAAATTTTTCAAGGGCTTATTCGGCCCCATAAGAAATAGCAAATTCCAATTTGAGT
GCCCTATAAGCAAATTGCTTATAGACTCTTTGTAAAGTGGAAATTTTGTGTGAAGCATCGGAATTTTGAATTATTTAATTAATTTATGAAGGGTTATGCAACTCCACTCGGAGAAAGAGAGTTCAGTTGTTTTGATTAAAGGCAATTTTTGCTCGACTCAAGCTTTCAGTGGTAATTGAGATCGAGGTGTCTGTATGCTT
TGTGGGTTCTCTTCCTTGTGATTGTTTTCTTTGTGATACCTTCTTAAATGGAAGGCTTTTAAAATCGCAGTAGCAGATTCTTGAAGGGTTATGGATATTATGTTCTGCGTTAATATGACTACTACCACTGCATAGATCCTCCAGGTCTTGAGCTGATGAACTGCATCTGGTGACATCACAAACCCTATGGACTGTCTGTG
TTGTGCTTGACTTTGCTATTTAATTGCAAAGGGGAGGAGTCTTGGTTGTTTATTACTACCGTTTGCATTGAGCTGCACCATGATTGCGTTCTTGGCGATGAATGCGAATCCAAGAGAGTCAATGAATTTTGTGGTTGAATTGTATAGCAAATCTTTTATGGGCATGTTTGAAGAATACATTGTAGATACAGCTCGGGAAG
TCTTCATAGTTAACCTAACAATTGAAGGTTCGCAGATGTCATGTGAGGAGGCTGGGTGAATAACATATTTTGGTATTGGGATACATTGATGCCTTTGAAATTATAACCTGGCTCAAATTGAATGCTAACGTGGGGTCACTTCTGGTTCAGTAGCGTTGTCAATCTGAGCTGAAACCGTGCTTGTTGTGTGGTGTTTTTTT
GGATGTGAAATCGAAAATGTCTTCACAAAGCACTTCCCAGGGTGAACCGGCCAAAATTGAGCAGATACTAAATGAGTTTTTTGCTAAGAGTTTGCATATAATACTGGACTCGAGGATTCCGTGTGGTAGTTCTCATAATGGGGAATATTCTGGGGTATCATCCTCGATTTCCTCATCTTCATCAAGTCTCAGAACGAGGG
ATAAATGGTTTAATTTAGCTCTGGGAGAAAGCCCGGCTTCTTTTGAGAACATGGAGCTATGGCGGCGGAGCATGTCAGGGCCCATGATAGTGGATGTGATCCTTTTACGAGCTTCTGATCCAGGAGATGAAACTTCAACTATACTGCCAAAGAAACAAAGTTTCGCCAGGAATGCATCCTGTAAAGGAGGTCATCTGAAT
TTCTTGAATGCTGGAGAAGAGTCTCCACCAGAAGTGTTAGATGTTGAAATCCTACTAGAAAGATGGAGAGTGCAATATGAATATAGGAAGCCCAGTACACGAGATATTCCTTTTGGCAGGACATCTGTTGGGAGTGGAATATCAAGGCGGGAGGATGTCAAGAAGGCAGGTAGCAATGTTGGGCATGGCAAAGGACGCAG
TGTGTTAGGAACAGGAGAGAGTGAACTAGGAGCGGGATCTGCCCAAATTTCTTCTCATACTGTGGAAGTGCCTGTTGCGTATAAGAAAACATATAAGAGAACAGTTATATTGCTACGTTCTCTTTATTGCACTTGTCGACTTTTACCAGCCTATCGGCTTTTCCGACATGATAATTCTTCTAGCAACAATTGCAACTTTA
CTATTGCTTACAGGGTTTCATTTTCACCTGACCCTCTATCTCGTGTTGATGAGGCTGAAATGCATCCCTACAACTTTACCCCAGTAGAGACTCCCTGTGGAAGACTTTGTTTGTCAGTGTTATATCGTCCAATTGCACCAGATGCTTCTCTTGAGGCTTCTGTTCCTTTACTGCCACGGATTATCACAGACTATGTTAGA
AGCCCCTCTGCAGATCCTTCAAAGAGGTTCCCTG
>TRINITY_DN109607_c0_g1_i1 from sample A1 / Example unspliced isoform:ATTGCTTAGGTATTCCTTATTTATTTATCAGATCTATCGCAAACATACATGCGGGCGAATCATTATTTTTTTCCTATTTCTACCCATTACCCACAATGCATTCATCTCCTCTGGAAATTTATTTTATAAAATTTTTCCAGGCAATTGAAGCCGTGCCTGTTTTTAAGGCGTCGGATCTGCAGTTGATATATCTGGGAGGA
AATCTGGAGAACGGAGATGCTTTTGCTTTTGCTGTTGCTGCTGTCCCAGATTGTGCAGCATGCGGTCTGCATTGACCATGACAAGgtaaggggtttttactggagcttacctctcttatattctcatactgatggcaatttcacaatcactactctgattttccgcaaaattcaatccgtagTGGGATCAGGGTGTTAAA
TGGTCCGTTTCCCCAACTGGTTACATCTCTCGAGCGGAGCTTCGTTCTGTGGGCATTTCATGGGCTATCACCGCCACGAAACTATTGGACTAAATTCTCATTTCAATTCAATTGCAAATTTTTCAAGGGCTTATTCGGCCCCATAAGAAATAGCAAATTCCAATTTGAGTGCCCTATAAGCAAATTGCTTATAGACTCTT
TGTAAAGTGGAAATTTTGTGTGAAGCATCGGAATTTTGAATTATTTAATTAATTTATGAAGGGTTATGCAACTCCACTCGGAGAAAGAGAGTTCAGTTGTTTTGATTAAAGGCAATTTTTGCTCGACTCAAGCTTTCAGTGGTAATTGAGATCGAGGTGTCTGTATGCTTTGTGGGTTCTCTTCCTTGTGATTGTTTTCT
TTGTGATACCTTCTTAAATGGAAGGCTTTTAAAATCGCAGTAGCAGATTCTTGAAGGGTTATGGATATTATGTTCTGCGTTAATATGACTACTACCACTGCATAGATCCTCCAGGTCTTGAGCTGATGAACTGCATCTGGTGACATCACAAACCCTATGGACTGTCTGTGTTGTGCTTGACTTTGCTATTTAATTGCAAA
GGGGAGGAGTCTTGGTTGTTTATTACTACCGTTTGCATTGAGCTGCACCATGATTGCGTTCTTGGCGATGAATGCGAATCCAAGAGAGTCAATGAATTTTGTGGTTGAATTGTATAGCAAATCTTTTATGGGCATGTTTGAAGAATACATTGTAGATACAGCTCGGGAAGTCTTCATAGTTAACCTAACAATTGAAGGTT
CGCAGATGTCATGTGAGGAGGCTGGGTGAATAACATATTTTGGTATTGGGATACATTGATGCCTTTGAAATTATAACCTGGCTCAAATTGAATGCTAACGTGGGGTCACTTCTGGTTCAGTAGCGTTGTCAATCTGAGCTGAAACCGTGCTTGTTGTGTGGTGTTTTTTTGGATGTGAAATCGAAAATGTCTTCACAAAG
CACTTCCCAGGGTGAACCGGCCAAAATTGAGCAGATACTAAATGAGTTTTTTGCTAAGAGTTTGCATATAATACTGGACTCGAGGATTCCGTGTGGTAGTTCTCATAATGGGGAATATTCTGGGGTATCATCCTCGATTTCCTCATCTTCATCAAGTCTCAGAACGAGGGATAAATGGTTTAATTTAGCTCTGGGAGAAA
GCCCGGCTTCTTTTGAGAACATGGAGCTATGGCGGCGGAGCATGTCAGGGCCCATGATAGTGGATGTGATCCTTTTACGAGCTTCTGATCCAGGAGATGAAACTTCAACTATACTGCCAAAGAAACAAAGTTTCGCCAGGAATGCATCCTGTAAAGGAGGTCATCTGAATTTCTTGAATGCTGGAGAAGAGTCTCCACCA
GAAGTGTTAGATGTTGAAATCCTACTAGAAAGATGGAGAGTGCAATATGAATATAGGAAGCCCAGTACACGAGATATTCCTTTTGGCAGGACATCTGTTGGGAGTGGAATATCAAGGCGGGAGGATGTCAAGAAGGCAGGTAGCAATGTTGGGCATGGCAAAGGACGCAGTGTGTTAGGAACAGGAGAGAGTGAACTAGG
AGCGGGATCTGCCCAAATTTCTTCTCATACTGTGGAAGTGCCTGTTGCGTATAAGAAAACATATAAGAGAACAGTTATATTGCTACGTTCTCTTTATTGCACTTGTCGACTTTTACCAGCCTATCGGCTTTTCCGACATGATAATTCTTCTAGCAACAATTGCAACTTTACTATTGCTTACAGGGTTTCATTTTCACCTG
ACCCTCTATCTCGTGTTGATGAGGCTGAAATGCATCCCTACAACTTTACCCCAGTAGAGACTCCCTGTGGAAGACTTTGTTTGTCAGTGTTATATCGTCCAATTGCACCAGATGCTTCTCTTGAGGCTTCTGTTCCTTTACTGCCACGGATTATCACAGACTATGTTAGAAGCCCCTCTGCAGATCCTTCAAAGAGGTTC
CCTG
Intron 4 GTAAGGGGTT ... AGGCCAAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50.76 | 23.3 | 22 | 26 |
| A2 | 61.11 | 7 | 10 | 12 |
| A3 | 54.55 | 10 | 19 | 5 |
| A4 | 32.35 | 23 | 16 | 6 |
| A5 | 100 | 0 | 8 | 0 |
| A6 | 42.31 | 15 | 5 | 17 |
| A7 | 45.16 | 17 | 3 | 25 |
| A8 | 50 | 9 | 1 | 17 |
| A9 | 38.89 | 11 | 1 | 13 |
| A10 | 31.58 | 13 | 5 | 7 |
>TRINITY_DN41569_c0_g1_i4 from sample A7 / Example spliced isoformTTTTTAATCTTTACTCTGAAAGCCTTTCCAATCTAAGGATAAAACAGGCGTGGGACCAAATTGCTTAGGCAATTGAAGCCGTGCCTGTTTTTAAGGCGTCGGATCTGCAGTTGATATATCTGGGAGGAAATCTGGAGAACGGAGATGCTTTTGCTTTTGCTGTTGCTGCTGTCCCAGATTGTGCAGCATGCGGTCTGCAT
TGACCATGACAAGGTGTGCGGAACTGATGATATACAGCTACCAGGAATCAAATTCCCATCCAGTGGTTCACCGAGGATTCCATTCTCTAGAAGTTCCAGTAAACTTTCTTATCAGGATGATATTGAAGATGAGGAGTTTTCATACCCATTTGCACTATATGATGATGAGATGTCTGAGTGTAGAAGCAGGACCAATTCCA
TTGATGGAAGGCAAAGTGTCTCAGAATCTCTGGAAACTGTGGGCCGGACTGTGACAACACCTAGAAAATCACTGGGTGCTGCTGTAGGTGCTCTTGTACATTTGCTGAAATCTGCACCACCTTTACGTCCAGAATTTGGTGATTCATATGATTCCTCGCAAACATATCTGCAACCCCACGGTGTACCGGGTCTTTCCATC
ACAAGCTCCCATTCTGTGATGGATGGTTCGGGGTTATTTGCTCATAAAACAGCTGCTGATGCATTGGAGGAGCTTAGGAGCTACCGAGAAATGAAAGACAATTTACTGAGCCAAAGTGGAACTCGGGCAGTAGGGAAGCCAGCCTAACGGATCATAAATGCTAGAGCTGTTTGTTGAGTTCCTGAAGGCACCAAAGTAGT
AATGCTGGACTCTGCATGTACATATGTATAGTTAGTTTGAACTTAATTATTTGTTTCAGTTGGCAGTTCACAATTTGCTGGTTTCTCTGATTGGCCAATGGAAGTCAATGCTTACTATTGATAACAGGAGCAAAACTCTTTTCAAGGAGTCGCCTGTTAGTTTGTCCAAGCAATGTTCACAATTTAACAGAAAAGGAGTA
CTAATCTCATTATTTTTAAATTTTTATTATTGTTAACTGAGTTGATTACACATTGGAGAAACGGCCATTTGTGGTTCTGACATTGTACATTTGTTTCAAATAAGTCTCACAGGATTGTGCCGAGAAAATTTGAGTTCTCTTCATGGTGGAGTTTGATCCTTATTGTGTTATAGTGGTTTATTAGATAAAAGCATGAGCTA
GCGTA
>TRINITY_DN41569_c0_g1_i3 from sample A7 / Example unspliced isoform:TATTTTTTTCCTATTTCTACCCATTACCCACAATGCATTCATCTCCTCTGGAAATTTATTTTATAAAATTTTTCCAGGCAATTGAAGCCGTGCCTGTTTTTAAGGCGTCGGATCTGCAGTTGATATATCTGGGAGGAAATCTGGAGAACGGAGATGCTTTTGCTTTTGCTGTTGCTGCTGTCCCAGATTGTGCAGCATGC
GGTCTGCATTGACCATGACAAGgtaaggggtttttactggagcttacctctcttatattctcatactgatggcaatttcacaatcactactctgattttccgcaaaattcaatccgtagtgggatcagggtgttaaatggtccgtttccccaactggttacatctctcgagcggagcttcgttctgtgggcatttcatgg
gctatcaccgccacgaaactattggactaaattctcatttcaattcaattgcaaatttttcaagggcttattcggccccataagaaatagcaaattccaatttgagtgccctataagcaaattgcttatagactctttgtaaagtggaaattttgtgtgaagcatcggaattttgaattatttaattaatttatgaaggg
ttatgcaactccactcggagaaagagagttcagttgttttgattaaaggcaatttttgctcgactcaagctttcagtggtaattgagatcgaggtgtctgtatgctttgtgggttctcttccttgtgattgttttctttgtgataccttcttaaatggaaggcttttaaaatcgcagtagcagattcttgaagggttatg
gatattatgttctgcgttaatatgactactaccactgcatagatcctccaggtcttgagctgatgaactgcatctggtgacatcacaaaccctatggactgtctgtgttgtgcttgactttgctatttaattgcaaaggggaggagtcttggttgtttattactaccgtttgcattgagctgcaccatgattgcgttctt
ggcgatgaatgcgaatccaagagagtcaatgaattttgtggttgaattgtatagcaaatcttttatgggcatgtttgaagaatacattgtagatacagctcgggaagtcttcatagttaacctaacaattgaaggttcgcagatgtcatgtgaggaggctgggtgaataacatattttggtattgggatacattgatgcc
tttgaaattataacctggctcaaattgaatgctaacgtggggtcacttctggttcagtagcgttgtcaatctgagctgaaaccgtgcttgttgtgtggtgtttttttggatgtgaaatcgaaaatgtcttcacaaatcacttcccagggtgaaccggccaaaattgagcagatactaaatgagttttttgctaagagttt
gcatataatactggactcgaggattccgtgtggtagttctcataatggggaatattctggggtatcatcctcgatttcctcatcttcatcaagtctcagaacgagggataaatggtttaatttagctctgggagaaagcccggcttcttttgagaacatggagctatggcggcggagcatgtcagggcccatgatagtgg
atgtgatccttttacgagcttctgatccaggagatgaaacttcaactatactgccaaagaaacaaagtttcgccaggaatgcatcctgtaaaggaggtcatctgaatttcttgaatgctggagaagagtctccaccagaagtgttagatgttgaaatcctactagaaagatggagagtgcaatatgaatataggaagccc
agtacacgagatattccttttggcaggacatctgttgggagtggaatatcaaggcgggaggatgtcaagaaggcaggtagcaatgttgggcatggcaaaggacgcagtgtgttaggaacaggagagagtgaactaggagcgggatctgcccaaatttcttctcatactgtggaagtgcctgttgcgtataagaaaacata
taagagaacagttatattgctacgttctctttattgcacttgtcgacttttaccagcctatcggcttttccgacatgataattcttctagcaacaattgcaactttactattgcttacagggtttcattttcacctgaccctctatctcgtgttgatgaggctgaaatgcatccctacaactttaccccagtagagactc
cctgtggaagactttgtttgtcagtgttatatcgtccaattgcaccagatgcttctcttgaggcttctgttcctttactgccacggattatcacagactatgttagaagcccctctgcagatccttcaaagaggttccctggtgatatcactgtaaaatcagggaagaaagaagcatctacaacttccctccctttgtca
gcaccaggatcccctgcttgtacagcttctgtaagaaggcgcagttggaatggcagtccaggcaaagtgcttccttcaccaccatcttccctatccccttcacatcgcctcagcatatctccttccccttccccttcctactcatatggtcatggttctccttctacattacctgcttcttgtcctgatggtcctcaaca
atacatgcgagatcactctctatcaccaagtagttctcctatggatcgtctacatacccaaatttcttcccgtcaatctcattgccaccaaaaagctgctagttttgatgaacattggttattgcctccattttcaccatctccatcaccctcaccaccaacacatttaccagagggtaatcatgcagacccttttgcac
attctggaagtgctcctgtcagtattccagctccctcagttgggagaagtcaaaggaattgggcagttgaatgctataatcaaaacaagttcttacttcctcctctctcacccaaaagtagaaagccggatgccttacccaggaccgcctctgctaattctaggattatgtctactcaatccccagtttctcagggatat
ctatctgaatggcgctcctctagaaaacgggatgcttcaagaccagcagaatgtcaaactgggataactgcttttaatgcatacacaggccaaaagGTGTGCGGAACTGATGATATACAGCTACCAGGAATCAAATTCCCATCCAGTGGTTCACCGAGGATTCCATTCTCTAGAAGTTCCAGTAAACTTTCTTATCAGGA
TGATATTGAAGATGAGGAGTTTTCATACCCATTTGCACTATATGATGATGAGATGTCTGAGTGTAGAAGCAGGACCAATTCCATTGATGGAAGGCAAAGTGTCTCAGAATCTCTGGAAACTGTGGGCCGGACTGTGACAACACCTAGAAAATCACTGGGTGCTGCTGTAGGTGCTCTTGTACATTTGCTGAAATCTGCAC
CACCTTTACGTCCAGAATTTGGTGATTCATATGATTCCTCGCAAACATATCTGCAACCCCACGGTGTACCGGGTCTTTCCATCACAAGCTCCCATTCTGTGATGGATGGTTCGGGGTTATTTGCTCATAAAACAGCTGCTGATGCATTGGAGGAGCTTAGGAGCTACCGAGAAATGAAAGACAATTTACTGAGCCAAAGT
GGAACTCGGGCAGTAGGGAAGCCAGCCTAACGGATCATAAATGCTAGAGCTGTTTGTTGAGTTCCTGAAGGCACCAAAGTAGTAATGCTGGACTCTGCATGTACATATGTATAGTTAGTTTGAACTTAATTATTTGTTTCAGTTGGCAGTTCACAATTTGCTGGTTTCTCTGATTGGCCAATGGAAGTCAATGCTTACTA
TTGATAACAGGAGCAAAACTCTTTTCAAGGAGTCGCCTGTTAGTTTGTCCAAGCAATGTTCACAATTTAACAGAAAAGGAGTACTAATCTCATTATTTTTAAATTTTTATTATTGTTAACTGAGTTGATTACACATTGGAGAAACGGCCATTTGTGGTTCTGACATTGTACATTTGTTTCAAATAAGTCTCACAGGATTG
TGCCGAGAAAATTTGAGTTCTCTTCATGGTGGAGTTTGATCCTTATTGTGTTATAGTGGTTTATTAGATAAAAGCATGAGCTAGCGTA
Intron 5 GTATTCCTTA ... ATTTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 14 | 1 | 14 |
| A2 | 35.48 | 20 | 2 | 11 |
| A3 | 64.29 | 5 | 3 | 9 |
| A4 | 50.05 | 16 | 7.4 | 16 |
| A5 | 37.5 | 15 | 0 | 9 |
| A6 | 41.67 | 7 | 0 | 5 |
| A7 | 55.56 | 4 | 0 | 5 |
| A8 | 45 | 2.5 | 0 | 2 |
| A9 | 33.33 | 10 | 0 | 5 |
| A10 | 38.46 | 8 | 0.5 | 5 |
>TRINITY_DN105780_c0_g1_i2 from sample A2 / Example spliced isoformTTCTTCCCAAATCTTTATTCCCTTTGAACTTTTTAATCTTTACTCTGAAAGCCTTTCCAATCTAAGGATAAAACAGGCGTGGGACCAAATTGCTTAGGCAATTGAAGCCGTGCCTGTTTTTAAGGCGTCGGATCTGCAGTTGATATATCTGGGAGGAAATCTGGAGAACGGAGATGCTTTTGCTTTTGCTGTTGCTGCTG
TCCCAGATTGTGCAGCATGCGGTCTGCATTGACCATGACAAGGTAAGGGGTTTTTACTGGAGCTTACCTCTCTTATATTCTCATACTGATGGCAATTTCACAATCACTACTCTGATTTTCCGCAAAATTCAATCCGTAGTGGGATCAGGGTGTTAAATGG
>TRINITY_DN105780_c0_g1_i4 from sample A2 / Example unspliced isoform:TTCTTCCCAAATCTTTATTCCCTTTGAACTTTTTAATCTTTACTCTGAAAGCCTTTCCAATCTAAGGATAAAACAGGCGTGGGACCAAATTGCTTAGgtattccttatttatttatcagatctatcgcaaacatacatgcgggcgaatcattatttttttcctatttctacccattacccacaatgcattcatctcctct
ggaaatttattttaataaatttttccagGCAATTGAAGCCGTGCCTGTTTTTAAGGCGTCGGATCTGCAGTTGATATATCTGGGAGGAAATCTGGAGAACGGAGATGCTTTTGCTTTTGCTGTTGCTGCTGTCCCAGATTGTGCAGCATGCGGTCTGCATTGACCATGACAAG