sp|Q9LRE6|DPOD1_ORYSJ ----> DNA polymerase delta catalytic subunit
Intron 1 GCATATGAGA ... ACTGAGCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 61.21 | 64 | 107 | 95 |
| A2 | 67.74 | 30 | 77 | 49 |
| A3 | 75.26 | 24 | 73 | 73 |
| A4 | 70.99 | 19 | 41 | 52 |
| A5 | 73.13 | 9 | 22 | 27 |
| A6 | 83.65 | 13 | 72 | 61 |
| A7 | 67.65 | 71 | 159 | 138 |
| A8 | 70.87 | 74 | 160 | 200 |
| A9 | 77.13 | 47 | 152 | 165 |
| A10 | 72.24 | 49 | 123 | 132 |
>TRINITY_DN107764_c1_g2_i4 from sample A5 / Example spliced isoformCTAATCTCATGGTTCATTAGATATGACAAAGTGAGTTTTCATGTATCGTTTTTGTTGTTATTAGATTGCCAATTTAGTAACATTGCAAGGAGAAGATCGCCCATTTGTACGAAATGTAATGACCTTGAAGTCGTGCTCTCCAATTGTTGGTGTTGACGTAATGTCATTTGATAATGAAAGAGAGGTGTTGCTTGCATGGA
GGGATCTTATTCGTGAAGTTGATCCAGACCTTATCATTGGATATAATATATGCAAGTTTGACTTGCCATATCTTTTAGAGAGGGCAGAGACATTGAAAATAACAGAGTTCCCTTTCTTGGGCCGTATTAGAAATAGCCGTGTTCGTGTGAGGGACACCTCTTTCTCATCAAGGCAATATGGTACACGAGAGAGTAAGGAA
GCAACGATTGAAGGCAGAGTTCAGTTCGATTTATTTCAGGTGATGCAGAGAGATTACAAGCTCAGTTCGTATTCATTAAATTCCGTTTCTGCACACTTTCTTGGTGAGCAGAAAGAAGATGTGCATCATTCTATCATTTCTGATTTGCATAATGGGAATCCGGAGACAAGACGAAGGCTTGCTGTATATTGTCTGAAGGA
TGCTTATCTTCCACAGCGGCTCTTGGATAAACTGATGTTTATATACAATTATGTAGAGATGGCTCGTGTTACTGGTGTTCCTTTGTCATTTTTGCTTTCCAGGGGTCAAAGCATCAAGGTTTTATCTCAGATACTAAGAAAATCAAGGCAAAAAAATCTTCTTGTGCCAAATATTAAAGGCCAAAGCTCTGGTCAGGAGA
CTTTTGAAGGTGCAACGGTTTTGGAGGCAAAATCAGGGTTTTACGAGAAGCCAATTGCAACTCTGGACTTTGCATCCTTATATCCATCAATCATGATGGCATATAATCTTTGCTATTGCAGCTTGGTCAGGTCAGATGACCTTGCAAAATTTAATCTCCAACCAGAGTGTGTAAATAAAACACCATCGGGTGAGACTTTT
GTCAAACCAACTTTACAGAAGGGCATATTACCAGAGATCCTAGAAGAGTTACTGGCTGCCAGGAAAAGAGCCAAGGCAGATTTAAAGGAGGCTAAAGATCCTTTCGAAAAGGCTGTTTTGGATGGTCGACAACTGGCTTTGAAGATCAGTGCAAATTCAGTTTATGGGTTTACTGGTGCTACTGTTGGGCAGTTGCCCTG
TTTGGAGATTTCGTCGAGTGTGACAAGCTATGGCCGTCAAATGATAGAGCATACAAAGAGGCTAGTTGAAGAAAGGTTCACAATAGTTGGTGGTTACCAATACGATGCTGAGGTTGTATATGGAGATACAGATTCAGTTATGATACAGTTTGGTGTACCAACTATAGAGGAAGCCATGACACTAGGGAGGGAAGCCTCAG
ATTATATTAGTGCTACATTCACAAAGCCTATTAAACTAGAATTTGAAAAAATATACTACCCATACTTGTTGATCAGCAAGAAAAGATATGCTGGGCTGTTGTGGACAAAGCCAGATGCATATGACAAAATGGATACTAAAGGCATTGAAACAGTGCGAAGGGACAATTGTCTGTTGGTGAAGAACTTGGTTACAGAGTGT
CTTCACAAAATACTCATTGATCGTGACATACCCGGTGCAGTGCAGTATGTCAAGAACACTATTTCTGACCTGTTAATGAACAGAATGGATTTGTCACTTTTGGTGATAACTAAGGGTCTGACAAAGACTGGAGATGACTACGCAGTCAAGGCAGCGCATGTGGAACTAGCTGAGCGCATGCGGAAGAGGGATGCTGCAAC
TGCTCCAACTGTGGGTGATCGTGTTCCATACGTCATCATAAAGGCTGCAAAAGGTGCCAAGCCACTGTTGAGAATATTTGAGCCCATTTTGAAGAATGCAAGCAAGGAGCTTCTTCATGGAAGTCACACACGAGCAGTTTCCATATCAACTCCTTCAAATAGTGGAATTATGAAATTTGCCAAGAAACAACTCAGTTGTA
TTGGTTGTAAAACACCTATCAGTAAAGAAGATCAGACGCTTTGTTCACATTGCAAAGGAAGAGAAGCTGAACTGTATCAGAAAACAGTTGCAAATGTGAGGGAATTAGAAATGCTCTTTGGTAAACTATGGACACAATGTCAGCGTTGCCAAGGCTCTCTGCACCAAGATGTTCTTTGTACAAGTCGTGACTGTCCAATA
TTTTATCGTAGGAAGAAAGCTCAGAAAGACCTAACTGAAGCAGAGGTGCAACTAGAGCGCTGGCAATTTTGAGG
>TRINITY_DN107764_c1_g2_i7 from sample A5 / Example unspliced isoform:GTCTAAAATGGCGGGAAAGCCATTGCAGGAATAGGTGTTCCCCGCTTGTCCTTATGCTGGTACGCCATGGTTCACGTTCAAAACAGGTTATAGCCTGAGTCCAGTCCAGGAACCTGCCACTGCCCATTTCTTTCTTTTCTTCTACAGGTTTACACAGAGGGGGAAGCAAGGGCAAACCCTTGGAAATATCGATCTCATGG
AGGGCAAACGGCGTTTTGGGGGTCCGCCCTCTGCTCCTAATCCTCCTTCGAAGAGGTTCCAGCCCTCAGAGGAGGAGGATGAAGAATTGGACGAGGACGTGTTTCTCGAAGAAACCCTTTTGAGGGACGAGGAGCTCCTGCAAGACAGCGGGGTGGAGGGCCTCGCTTCTCGCCTCTCTAAGTGGAAGAGACCGCCTTTG
CCGTCCGCTTATGCTACTTCTCCCTCTCAAAGCATAGAGTTCCAGCAGTTGGATATTGATTACATTATAGGTGAAAGTCACCGGGAGATTTTGCCTCATTCAACTGGACAAGCAGCAATTTTGCGGATATTTGGTGTGACCCAAGAAGGTTACAGTGTATGCTGTCTTGTACATGGTTTTCAACCATACTTTTACATCAG
TTGCCTTGATGGGATGAGTCCAGATGACATAACAAGATTCCAGCAAGTCTTAGAGGCAAGGATGCGGGAAGCAAATAGAAATAGTAAGGTTACAAAGTTCATCACAAGGATTGAAATGGTTCAGAAAAGAAGTATTATGTACTATCAAGAACAGAAATTTCGAACTTTCCTTAAAATTGTCGTTGCTCTTCCTACAATGG
TTGCTAGTTGTAGAGGTATTTTAGAAAGGGGCATCACAATTGATGGATTGGGTTCAAGGTGCTTCACTACCTATGAAAGCAATGTTCTGTTTGCACTTCGTTTCATGATTGATTGTGATATTGTTGGTGGCAACTGGATTGAACTTCCTCCCTGGTCATACCAAAGATCTCCTAGGAACATGTCTTATTGCCAAATAGAA
GTTGATATTCTATATTCTAAATTAATTAGTCATAGCCCAGTTGGCAAGTACTCAAAGATGGCTCCCTTTAGAATTCTTAGTTTTGATATTGAATGTGCTGGTCGAAAAGGACATTTTCCAGAGCCCAATCATGATCCTGTTATCCAGATTGCCAATTTAGTAACATTGCAAGGAGAAGATCGCCCATTTGTACGAAATGT
AATGACCTTGAAGTCGTGCTCTCCAATTGTTGGTGTTGACGTAATGTCATTTGATAATGAAAGAGAGGTGTTGCTTGCATGGAGGGATCTTATTCGTGAAGTTGATCCAGACCTTATCATTGGATATAATATATGCAAGTTTGACTTGCCATATCTTTTAGAGAGGGCAGAGACATTGAAAATAACAGAGTTCCCTTTCT
TGGGCCGTATTAGAAATAGCCGTGTTCGTGTGAGGGACACCTCTTTCTCATCAAGGCAATATGGTACACGAGAGAGTAAGGAAGCAACGATTGAAGGCAGAGTTCAGTTCGATTTATTTCAGGTGATGCAGAGAGATTACAAGCTCAGTTCGTATTCATTAAATTCCGTTTCTGCACACTTTCTTGGTGAGCAGAAAGAA
GATGTGCATCATTCTATCATTTCTGATTTGCATAATGGGAATCCGGAGACAAGACGAAGGCTTGCTGTATATTGTCTGAAGGATGCTTATCTTCCACAGCGGCTCTTGGATAAACTGATGTTTATATACAATTATGTAGAGATGGCTCGTGTTACTGGTGTTCCTTTGTCATTTTTGCTTTCCAGGGGTCAAAGCATCAA
GGTTTTATCTCAGATACTAAGAAAATCAAGGCAAAAAAATCTTCTTGTGCCAAATATTAAAGGCCAAAGCTCTGGTCAGGAGACTTTTGAAGGTGCAACGGTTTTGGAGGCAAAATCAGGGTTTTACGAGAAGCCAATTGCAACTCTGGACTTTGCATCCTTATATCCATCAATCATGATGGCATATAATCTTTGCTATT
GCAGCTTGGTCAGGTCAGATGACCTTGCAAAATTTAATCTCCAACCAGAGTGTGTAAATAAAACACCATCGGGTGAGACTTTTGTCAAACCAACTTTACAGAAGGGCATATTACCAGAGATCCTAGAAGAGTTACTGGCTGCCAGGAAAAGAGCCAAGGCAGATTTAAAGGAGGCTAAAGATCCTTTCGAAAAGGCTGTT
TTGGATGGTCGACAACTGGCTTTGAAGATCAGTGCAAATTCAGTTTATGGGTTTACTGGTGCTACTGTTGGGCAGTTGCCCTGTTTGGAGATTTCGTCGAGTGTGACAAGCTATGGCCGTCAAATGATAGAGCATACAAAGAGGCTAGTTGAAGAAAGGTTCACAATAGTTGGTGGTTACCAATACGATGCTGAGGTTGT
ATATGGAGATACAGATTCAGTTATGATACAGTTTGGTGTACCAACTATAGAGGAAGCCATGACACTAGGGAGGGAAGCCTCAGATTATATTAGTGCTACATTCACAAAGCCTATTAAACTAGAATTTGAAAAAATATACTACCCATACTTGTTGATCAGCAAGAAAAGATATGCTGGGCTGTTGTGGACAAAGCCAGATG
CATATGACAAAATGGATACTAAAGGCATTGAAACAGTGCGAAGGGACAATTGTCTGTTGGTGAAGAACTTGGTTACAGAGTGTCTTCACAAAATACTCATTGATCGTGACATACCCGGTGCAGTGCAGTATGTCAAGAACACTATTTCTGACCTGTTAATGAACAGAATGGATTTGTCACTTTTGGTGATAACTAAGGGT
CTGACAAAGACTGGAGATGACTACGCAGTCAAGGCAGCGCATGTGGAACTAGCTGAGCGCATGCGGAAGAGGGATGCTGCAACTGCTCCAACTGTGGGTGATCGTGTTCCATACGTCATCATAAAGGCTGCAAAAGGTGCCAAGgcatatgagaaatccgaggatccaatttacgtcctggagaataacatccctattga
tccacaatactatctggagaatcaactgagcaagCCACTGTTGAGAATATTTGAGCCCATTTTGAAGAATGCAAGCAAGGAGCTTCTTCATGGAAGTCACACACGAGCAGTTTCCATATCAACTCCTTCAAATAGTGGAATTATGAAATTTGCCAAGAAACAACTCAGTTGTATTGGTTGTAAAACACCTATCAGTAAAG
AAGATCAGACGCTTTGTTCACATTGCAAAGGAAGAGAAGCTGAACTGTATCAGAAAACAGTTGCAAATGTGAGGGAATTAGAAATGCTCTTTGGTAAACTATGGACACAATGTCAGCGTTGCCAAGGCTCTCTGCACCAAGATGTTCTTTGTACAAGTCGTGACTGTCCAATATTTTATCGTAGGAAGAAAGCTCAGAAA
GACCTAACTGAAGCAGAGGTGCAACTAGAGCGCTGGCAATTTTGAGGCTATAGATGGGTGGCTATCTTACTCCTTGATGGTGGATGACACAACTAGTGGCCACAACAAATTAATTGCAACAATTAGATGTTGACTTCATATTTTTTGTTATCAAGTTGAGCAAATCATATGCTACAAGAGACGTAAGATTGTGTCTA
Intron 2 GTACCATGTA ... CCTTATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.42 | 110 | 0 | 48 |
| A2 | 31 | 106.9 | 1 | 48 |
| A3 | 31.02 | 129 | 0 | 58 |
| A4 | 32.02 | 70.1 | 1 | 33 |
| A5 | 27.11 | 48.4 | 0 | 18 |
| A6 | 31.85 | 72.8 | 0 | 34 |
| A7 | 32.7 | 222.4 | 0 | 108 |
| A8 | 28.94 | 140 | 2 | 57 |
| A9 | 30.62 | 136.1 | 0 | 60 |
| A10 | 34.67 | 122.6 | 0 | 65 |
>TRINITY_DN120809_c7_g1_i16 from sample A1 / Example spliced isoformGTTTGGGTGTTTACAATGCATCAAATTTTCTACAATGATAGAATTTTAAGCCTATTCAGTCTGATATTGAGGCTATATTACTTCTAGTAGCTAATAATTTGGACTTCTTTTGCAAAGAATCATCTATGACCAAGGTTGTCCATCATAAACGATATTTGTTGTTCATTTTACAGGATCTTATTCGTGAAGTTGATCCAGAC
CTTATCATTGGATATAATATATGCAAGTTTGACTTGCCATATCTTTTAGAGAGGGCAGAGACATTGAAAATAACAGAGTTCCCTTTCTTGGGCCGTATTAGAAATAGCCGTGTTCGTGTGAGGGACACCTCTTTCTCATCAAGGCAATATGGTACACGAGAGAGTAAGGAAGCAACGATTGAAGGCAGAGTTCAGTTCGA
TTTATTTCAGGTGATGCAGAGAGATTACAAGCTCAGTTCGTATTCATTAAATTCCGTTTCTGCACACTTTCTTGGTGAGCAGAAAGAAGATGTGCATCATTCTATCATTTCTGATTTGCATAATGGGAATCCGGAGACAAGACGAAGGCTTGCTGTATATTGTCTGAAGGATGCTTATCTTCCACAGCGGCTCTTGGATA
AACTGATGTTTATATACAATTATGTAGAGATGGCTCGTGTTACTGGTGTTCCTTTGTCATTTTTGCTTTCCAGGGGTCAAAGCATCAAGGTTTTATCTCAGATACTAAGAAAATCAAGGCAAAAAAATCTTCTTGTGCCAAATATTAAAGCCCAAAGCTCTGGTCAGGAGACTTTTGAAGGTGCAACGGTTTTGGAGGCA
AAATCAGGGTTTTACGAGAAGCCAATTGCAACTCTGGACTTTGCATCCTTATATCCATCAATCATGATGGCATATAATCTTTGCTATTGCAGCTTGGTCAGGTCAGATGACCTTGCAAAATTTAATCTCCAACCAGAGTGTGTAAATAAAACACCATCGGGTGAGACTTTTGTCAAACCAACTTTACAGAAGGGCATATT
ACCAGAGATCCTAGAAGAGTTACTGGCTGCCAGGAAAAGAGCCAAGGCAGATTTAAAGGAGGCTAAAGATCCTTTCGAAAAGGCTGTTTTGGATGGTCGACAACTGGCTTTGAAGATCAGTGCAAATTCAGTTTATGGGTTTACTGGTGCTACTGTTGGGCAGTTGCCCTGTTTGGAGATTTCGTCGAGTGTGACAAGCT
ATGGCCGTCAAATGATAGAGCATACAAAGAGGCTAGTTGAAGAAAGGTTCACAATAGTTGGTGGTTACCAATACGATGCTGAGGTTGTATATGGAGATACAGATTCAGTTATGATACAGTTTGGTGTACCAACTATAGAGGAAGCCATGACACTAGGGAGGGAAGCCTCAGATTATATTAGTGCTACATTCACAAAGCCT
ATTAAACTAGAATTTGAAAAAATATACTACCCATACTTGTTGATCAGCAAGAAAAGATATGCTGGGCTGTTGTGGACAAAGCCAGATGCATATGACAAAATGGATACTAAAGGCATTGAAACAGTGCGAAGGGACAATTGTCTGTTGGTGAAGAACTTGGTTACAGAGTGTCTTCACAAAATACTCATTGATCGTGACAT
ACCCGGTGCAGTGCAGTATGTCAAGAACACTATTTCTGACCTGTTAATGAACAGAATGGATTTGTCACTTTTGGTGATAACTAAGGGTCTGACAAAGACTGGAGATGACTACGCAGTCAAGGCAGCGCATGTGGAACTAGCTGAGCGCATGCGGAAGAGGGATGCTGCAACTGCTCCAACTGTGGGTGATCGTGTTCCAT
ACGTCATCATAAAGGCTGCAAAAGGTGCCAAGGCATATGAGAAATCCGAGGATCCAATTTACGTCCTGGAGAATAACATCCCTATTGATCCACAATACTATCTGGAGAATCAACTGAGCAAGCCACTGTTGAGAATATTTGAGCCCATTTTGAAGAATGCAAGCAAGGAGCTTCTTCATGGAAGTCACACACGAGCAGTT
TCCATATCAACTCCTTCAAATAGTGGAATTATGAAATTTGCCAAGAAACAACTCAGTTGTATTGGTTGTAAAACACCTATCAGTAAAGAAGATCAGACGCTTTGTTCACATTGCAAAGGAAGAGAAGCTGAACTGTATCAGAAAACAGTTGCAAATGTGAGGGAATTAGAAATGCTCTTTGGTAAACTATGGACACAATG
TCAGCGTTGCCAAGGCTCTCTGCACCAAGATGTTCTTTGTACAAGTCGTGACTGTCCAATATTTTATCGTAGGAAGAAAGCTCAGAAAGACCTAACTGAAGCAGAGGTGCAACTAGAGCGCTGGCAATTTTGAGGTTACTGCATGTGTAGCTTGTACTAATTTTCTTGTTGTCCAATGTTTCTGTTTTCCTGAATTTTCT
CTGGTGTATTTTTCTCTGGTTTCATGGACCTGGGAATTTATTTGGTCCCCATGTCAAGATGAGCCATGGTTGATTTAATGTACAGTAATTGGCAAAGTACTTGTTATTTAATGTAAACCGGATAGATATTCTTTTCTCCTTGCAAATGAGATGGAGAAAAAGTCAAAATGGATAGATATGTCCCAAAGCAGACCCT
>TRINITY_DN120809_c7_g1_i8 from sample A1 / Example unspliced isoform:ATATTAGTGCTACATTCACAAAGgtaccatgtaaacaattttaaatatctgtgaagcctctggagttattactgatgtttgtgtaacactgatagtgttttcatatcactttttcccttcaaaactacatcttcttttgtcattgcactttcaatagctctttgcaagtatgcatgtgacaggattatcagttatgtatt
tttttgtatatgagatctatctggtgtatctttggcttctaactagtgcagtgtttttcatatgcccttatacagCCTATTAAACTAGAATTTGAAAAAATATACTACCCATACTTGTTGATCAGCAAGAAAAGATATGCTGGGCTGTTGTGGACAAAGCCAGATGCATATGACAAAATGGATACTAAAGGCATTGAAAC
AGTGCGAAGGGACAATTGTCTGTTGGTGAAGAACTTGGTTACAGAGTGTCTTCACAAAATACTCATTGATCGTGACATACCCGGTGCAGTGCAGTATGTCAAGAACACTATTTCTGACCTGTTAATGAACAGAATGGATTTGTCACTTTTGGTGATAACTAAGGGTCTGACAAAGACTGGAGATGACTACGCAGTCAAGG
CAGCGCATGTGGAACTAGCTGAGCGCATGCGGAAGAGGGATGCTGCAACTGCTCCAACTGTGGGTGATCGTGTTCCATACGTCATCATAAAGGCTGCAAAAGGTGCCAAGG
Intron 3 GTCTGTCCTT ... TTCTCTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 1 | 1 | 0 |
| A2 | 33.33 | 2 | 2 | 0 |
| A3 | 84.62 | 1 | 9 | 2 |
| A4 | 57.89 | 4 | 6 | 5 |
| A5 | 16.67 | 5 | 1 | 1 |
| A6 | 46.67 | 16 | 18 | 10 |
| A7 | 38.46 | 16 | 10 | 10 |
| A8 | 89.47 | 1 | 12 | 5 |
| A9 | 91.3 | 1 | 13 | 8 |
| A10 | 60 | 3 | 6 | 3 |
>TRINITY_DN42791_c0_g1_i2 from sample A6 / Example spliced isoformATAAATTAAACCAAACGCATTAAACAAAAACAAAACAAAAGAACATTTTCTACCAAACTAAACCAGATGAAGAGTTTGGCGCCAATGCAGAAAGGAGAAAGGAGGAAGGGACTTTGAGATTTGGGATTTGGGAAACAATGCTAAGTGGAGGAAAGGATTTTGATTCCAATGCAATCCACCCAATCTATAATTTCACACTA
GCATTTGGAATCCCTTTTTATGGAGGATCAGGAGTTCATGACTTGAAATCCCATGTTTGTGATGGTAGATTCCTCGATATTAGAATCCCTTGAGAAGATGATACAAGGTTTATGTCCTCTCCCGAGTTCAAGGTGCATAATGTGTTAGGCACCAAAAAGGGTTGTATATGGCGATACAGATTCAGTTATGATACAGTTTG
GTGTACCAACTATAGAGGAAGCCATGACACTAGGGAGGGAAGCCTCAGATTATATTAGTGCTACATTCACAAAGCCTATTAAACTAGAATTTGAAAAAATATACTACCCATACTTGTTGATCAGCAAGAAAAGATATGCTGGGCTGTTGTGGACAAAGCCAGATGCATATGACAAAATGGATACTAAAGGCATTGAAACA
GTGCGAAGGGACAATTGTCTGTTGGTGAAGAACTTGGTTACAGAGTGTCTTCACAAAATACTCATTGATCGTGACATACCCGGTGCAGTGCAGTATGTCAAGAACACTATTTCTGACCTGTTAATGAACAGAATGGATTTGTCACTTTTGGTGATAACTAAGGGTCTGACAAAGACTGGAGATGACTACGCAGTCAAGGC
AGCGCATGTGGAACTAGCTGAGCGCATGCGGAAGAGGGATGCTGCAACTGCTCCAACTGTGGGTGATCGTGTTCCATACGTCATCATAAAGGCTGCAAAAGGTGCCAAGGCATATGAGAAATCCGAGGATCCAATTTACGTCCTGGAGAATAACATCCCTATTGATCCACAATACTATCTGGAGAATCAACTGAGCAAGC
CACTGTTGAGAATATTTGAGCCCATTTTGAAGAATGCAAGCAAGGAGCTTCTTCATGGAAGTCACACACGAGCAGTTTCCATATCAACTCCTTCAAATAGTGGAATTATGAAATTTGCCAAGAAACAACTCAGTTGTATTGGTTGTAAAACACCTATCAGTAAAGAAGATCAGACGCTTTGTTCACATTGCAAAGGAAGA
GAAGCTGAACTGTATCAGAAAACAGTTGCAAATGTGAGGGAATTAGAAATGCTCTTTGGTAAACTATGGACACAATGTCAGCGTTGCCAAGGCTCTCTGCACCAAGATGTTCTTTGTACAAGTCGTGACTGTCCAATATTTTATCGTAGGAAGAAAGCTCAGAAAGACCTAACTGAAGCAGAGGTGCAACTAGAGCGCTG
GCAATTTTGAGGTTACTGCATGTGTAGCTTGTACTAATTTTCTTGTTGTCCAATGTTTCTGTTTTCCTGAATTTTCTCTGGTGTATTTTTCTCTGGTTTCATGGACCTGGGAATTTATTTGGTCCCCATGTCAAGATGAGCCATGGTTGATTTAATGTACAGTAATTGGCAAAGTACTTGTTATTTAATGTAAACCGGAT
AGATATTCTTTTCTCCTTGCAAATGAGATGGAGAAAAAGTCAAAATGGATAGATATGTCCCAAAGCAGACCCTATAAAAAGCAACTTGCATGCATATGTATGTCCCAAATTTTAGGAGAGTGCACACTATAAAACACCGATCCACATGCATACATATGTACGTCCAGATGTGCATATAGCTGCATGGATGGAGGGATGGA
TAGGTAGATAGAGATTGATAGGCAGATAGAATCAGTTGCATCGACACAAGCAAATCAGACCCAAACAAGGAAGGGAAAAAGATAGGTGTGAAGCACAAAGAAGGCCATATTTTCCCTCTTTGGACAGTTTATACTAATTTGAAAACTTTACTGGTCATTGGATGATTGCACCTGTCAAAAGACTAATCCAGTGATGGCTT
GACAAGTATACCTTAAAATAAAAGGCATATATTAGAAAGGCTCTTATAACATCTCTCCCCATCCTCGGAGCAAATGCAGAGTCCTGGATGCCATCTTGATGATACTAATTTGAATACTTATTTGACCAGCCTTAGCAATCACAAGGATCATGATTTGAACAGAACCAACCATCTATCAATTTACATACAACACTCGTTAG
TTTCCTGGCTGGTGTATTGGATATGAAGTTGTGATGCATCATCTGCTTGTTAAAAGTCATCCTACCACTCATGTCTTTGAGTGCTGTCTAACTGAGTCTGTTACTCCAAGCATACATTTTCTCACTGTCAACTTGTCATGCACAACAACGCAGCCTTACCTACAATGCCATTGTAACTTCTACATAGCTGACTAAGTATT
GACATTTACTAGAGGGGCTTTGGTTAACATACCTTAGAATTCTAATCCATAATTTTATTGTCTACATAATGGGGTACATAAATCAACTAGTATTTTGTGCCATTATAATTATATTAACCCTAAATGAAAGAAAGTTGTGG
>TRINITY_DN42791_c0_g1_i6 from sample A6 / Example unspliced isoform:TTTTTATGGAGGTCGGCGAAGTCCAAAAATTAGTCACAATTTTTTTATTATTATTTTCAAAATGGTGCCCTAGGGATTTGTATAATTTTTTTTCCTCCAAGTTGCAGGATCAGGAGTTCATGACTTGAAATCCCATGTTTGTGATGGTAGATTCCTCGATATTAGAATCCCTTGAGAAGATGATACAAGgtctgtccttt
attcagagttcattcacagggttttgattccttggttgtggaagccctcgagaagatgatacagggttttgattcgttggctatgctttctctacagGTTTATGTCCTCTCCCGAGTTCAAGGTGCATAATGTGTTAGGCACCAAAAAGGGTTGTATATGGCGATACAGATTCAGTTATGATACAGTTTGGTGTACCAA
Intron 4 GCCGTCAAAT ... CGATGCTGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 85.71 | 4 | 18 | 26 |
| A2 | 66.67 | 9.3 | 7 | 21 |
| A3 | 79.38 | 10 | 20 | 47 |
| A4 | 75.76 | 5.3 | 9 | 19 |
| A5 | 74.27 | 7.3 | 11 | 24 |
| A6 | 68.95 | 15.3 | 21 | 40 |
| A7 | 69.25 | 33.7 | 34 | 91.7 |
| A8 | 76.33 | 12.7 | 21 | 48 |
| A9 | 76.36 | 13.7 | 24 | 53 |
| A10 | 82.55 | 9.3 | 27 | 52 |
>TRINITY_DN42791_c0_g1_i2 from sample A6 / Example spliced isoformATAAATTAAACCAAACGCATTAAACAAAAACAAAACAAAAGAACATTTTCTACCAAACTAAACCAGATGAAGAGTTTGGCGCCAATGCAGAAAGGAGAAAGGAGGAAGGGACTTTGAGATTTGGGATTTGGGAAACAATGCTAAGTGGAGGAAAGGATTTTGATTCCAATGCAATCCACCCAATCTATAATTTCACACTA
GCATTTGGAATCCCTTTTTATGGAGGATCAGGAGTTCATGACTTGAAATCCCATGTTTGTGATGGTAGATTCCTCGATATTAGAATCCCTTGAGAAGATGATACAAGGTTTATGTCCTCTCCCGAGTTCAAGGTGCATAATGTGTTAGGCACCAAAAAGGGTTGTATATGGCGATACAGATTCAGTTATGATACAGTTTG
GTGTACCAACTATAGAGGAAGCCATGACACTAGGGAGGGAAGCCTCAGATTATATTAGTGCTACATTCACAAAGCCTATTAAACTAGAATTTGAAAAAATATACTACCCATACTTGTTGATCAGCAAGAAAAGATATGCTGGGCTGTTGTGGACAAAGCCAGATGCATATGACAAAATGGATACTAAAGGCATTGAAACA
GTGCGAAGGGACAATTGTCTGTTGGTGAAGAACTTGGTTACAGAGTGTCTTCACAAAATACTCATTGATCGTGACATACCCGGTGCAGTGCAGTATGTCAAGAACACTATTTCTGACCTGTTAATGAACAGAATGGATTTGTCACTTTTGGTGATAACTAAGGGTCTGACAAAGACTGGAGATGACTACGCAGTCAAGGC
AGCGCATGTGGAACTAGCTGAGCGCATGCGGAAGAGGGATGCTGCAACTGCTCCAACTGTGGGTGATCGTGTTCCATACGTCATCATAAAGGCTGCAAAAGGTGCCAAGGCATATGAGAAATCCGAGGATCCAATTTACGTCCTGGAGAATAACATCCCTATTGATCCACAATACTATCTGGAGAATCAACTGAGCAAGC
CACTGTTGAGAATATTTGAGCCCATTTTGAAGAATGCAAGCAAGGAGCTTCTTCATGGAAGTCACACACGAGCAGTTTCCATATCAACTCCTTCAAATAGTGGAATTATGAAATTTGCCAAGAAACAACTCAGTTGTATTGGTTGTAAAACACCTATCAGTAAAGAAGATCAGACGCTTTGTTCACATTGCAAAGGAAGA
GAAGCTGAACTGTATCAGAAAACAGTTGCAAATGTGAGGGAATTAGAAATGCTCTTTGGTAAACTATGGACACAATGTCAGCGTTGCCAAGGCTCTCTGCACCAAGATGTTCTTTGTACAAGTCGTGACTGTCCAATATTTTATCGTAGGAAGAAAGCTCAGAAAGACCTAACTGAAGCAGAGGTGCAACTAGAGCGCTG
GCAATTTTGAGGTTACTGCATGTGTAGCTTGTACTAATTTTCTTGTTGTCCAATGTTTCTGTTTTCCTGAATTTTCTCTGGTGTATTTTTCTCTGGTTTCATGGACCTGGGAATTTATTTGGTCCCCATGTCAAGATGAGCCATGGTTGATTTAATGTACAGTAATTGGCAAAGTACTTGTTATTTAATGTAAACCGGAT
AGATATTCTTTTCTCCTTGCAAATGAGATGGAGAAAAAGTCAAAATGGATAGATATGTCCCAAAGCAGACCCTATAAAAAGCAACTTGCATGCATATGTATGTCCCAAATTTTAGGAGAGTGCACACTATAAAACACCGATCCACATGCATACATATGTACGTCCAGATGTGCATATAGCTGCATGGATGGAGGGATGGA
TAGGTAGATAGAGATTGATAGGCAGATAGAATCAGTTGCATCGACACAAGCAAATCAGACCCAAACAAGGAAGGGAAAAAGATAGGTGTGAAGCACAAAGAAGGCCATATTTTCCCTCTTTGGACAGTTTATACTAATTTGAAAACTTTACTGGTCATTGGATGATTGCACCTGTCAAAAGACTAATCCAGTGATGGCTT
GACAAGTATACCTTAAAATAAAAGGCATATATTAGAAAGGCTCTTATAACATCTCTCCCCATCCTCGGAGCAAATGCAGAGTCCTGGATGCCATCTTGATGATACTAATTTGAATACTTATTTGACCAGCCTTAGCAATCACAAGGATCATGATTTGAACAGAACCAACCATCTATCAATTTACATACAACACTCGTTAG
TTTCCTGGCTGGTGTATTGGATATGAAGTTGTGATGCATCATCTGCTTGTTAAAAGTCATCCTACCACTCATGTCTTTGAGTGCTGTCTAACTGAGTCTGTTACTCCAAGCATACATTTTCTCACTGTCAACTTGTCATGCACAACAACGCAGCCTTACCTACAATGCCATTGTAACTTCTACATAGCTGACTAAGTATT
GACATTTACTAGAGGGGCTTTGGTTAACATACCTTAGAATTCTAATCCATAATTTTATTGTCTACATAATGGGGTACATAAATCAACTAGTATTTTGTGCCATTATAATTATATTAACCCTAAATGAAAGAAAGTTGTGG
>TRINITY_DN42791_c0_g1_i10 from sample A6 / Example unspliced isoform:ATAAATTAAACCAAACGCATTAAACAAAAACAAAACAAAAGAACATTTTCTACCAAACTAAACCAGATGAAGAGTTTGGCGCCAATGCAGAAAGGAGAAAGGAGGAAGGGACTTTGAGATTTGGGATTTGGGAAACAATGCTAAGTGGAGGAAAGGATTTTGATTCCAATGCAATCCACCCAATCTATAATTTCACACTA
GCATTTGGAATCCCTTTTTATGGAGGATCAGGAGTTCATGACTTGAAATCCCATGTTTGTGATGGTAGATTCCTCGATATTAGAATCCCTTGAGAAGATGATACAAGGTTTATGTCCTCTCCCGAGTTCAAGGTGCATAATGTGTTAGGCACCAAAAAGGgccgtcaaatgatagagcatacaaagaggctagttgaaga
aaggttcacaatagttggtggttaccaatacgatgctgagGTTGTATATGGCGATACAGATTCAGTTATGATACAGTTTGGTGTACCAAGTACCAACTATAGAGGAAGCCATGACACTAGGGAGGGAAGCCTCAGATTATATTAGTGCTACATTCACAAAGGTACCATGTAAACAATTTTAAATATCTGTGAAGCCTCTG
GAGTTATTACTGATGTTTGTGTAACACTGATAGTGTTTTCATATTGTTAGTGCTAAAGTTAGCTCTCGACTACAAGAGGGCCAAGCTTACCACATCTGAAATACTAAATCTCAGCATGGGTAATCACAATAAAAACATTATTGATCAGGAT
Intron 5 GTGCAACTAG ... CAATTTTGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 87.83 | 7 | 58 | 43 |
| A2 | 87.1 | 4 | 33 | 21 |
| A3 | 86.36 | 6 | 46 | 30 |
| A4 | 82.76 | 5 | 27 | 21 |
| A5 | 100 | 0 | 9 | 8 |
| A6 | 85.71 | 8 | 57 | 39 |
| A7 | 91.44 | 8 | 107 | 64 |
| A8 | 91.39 | 13 | 175 | 101 |
| A9 | 85.62 | 11 | 82 | 49 |
| A10 | 94.81 | 2 | 45 | 28 |
>TRINITY_DN39979_c5_g1_i12 from sample A9 / Example spliced isoformGAAAGACCTAACTGAAGCAGAGGCTATAGATGGGTGGCTATCTTACTCCTTGATGGTGGATGACACAACTAGTGGCCACAACAAATTAATTGCAACAATTAGATGTTGACTTCATATTTTTTGTTATCAAGTTGAGCAAATCATATGCTACAAGAGACGTAAGATTGTGTCTAATGTGGCTTTGTAACATGTTGCTTGGT
AGCAACTTTTTGTGAATAGAGACATTCAATGATGCATGGAATTGTGGCAACTCCTCATCGACAACAAGTGGCTTCAAACTTCAAGGAAATAACTACATTTCTCTCTAAAAGCAAGACTTATGAACTCTCTACTTTCATGCCATGTTATAAGTGCTAGACATGCTTAATAACAAAACCCCAACGAAATTACATTGTCCAGC
ACATGAGAAAGATTAGACAATAACACACTTTGATATTATGGAACCAGTGCATTTATTACAATGGGATTTACTTCTCTTATATAGAGATCAAAATTCTTGGCTAGGTTGAAATATTAACTGGTTGCCAAAGAATATTTCAACCTAGGTTGCCAAAGGTCTTACCCCAACAATAAGAAGCTGATTATGAGGAAACATTTGGT
GCACCC
>TRINITY_DN39979_c5_g1_i7 from sample A9 / Example unspliced isoform:CAAAATCACATCTAAAAATTAAGAAAAAAAAATAGATACTAGATGTTTCAACTTGACAAAATCACATCAATTTATAAGGTGTCTAAAATGGCGGGAAAGCCATTGCAGGAATAGGTGTTCCCCGCTTGTCCTTATGCTGGTACGCCATGGTTCACGTTCAAAACAGGTTATAGCCTGAGTCCAGTCCAGGAACCTGCCAC
TGCCCATTTCTTTCTTTTCTTCTACAGGTTTACATACACAGAGTGAACAGAGGGGGAAGCAAGGGCAAACCCTTGGAAATATCGATCTCATGGAGGGCAAACGGCGTTTTGGGGGTCCGCCCTCTGCTCCTAATCCTCCTTCGAAGAGGTTCCAGCCCTCAGAGGAGGAGGATGAAGAATTGGACGAGGACGTGTTTCTC
GAAGAAACCCTTTTGAGGGACGAGGAGCTCCTGCAAGACAGCGGGGTGGAGGGCCTCGCTTCTCGCCTCTCTAAGTGGAAGAGACCGCCTTTGCCGTCCGCTTATGCTACTTCTCCCTCTCAAAGCATAGAGTTCCAGCAGTTGGATATTGATTACATTATAGGTGAAAGTCACCGGGAGATTTTGCCTCATTCAACTGG
ACAAGCAGCAATTTTGCGGATATTTGGTGTGACCCAAGAAGGTTACAGTGTATGCTGTCTTGTACATGGTTTTCAACCATACTTTTACATCAGTTGCCTTGATGGGATGAGTCCAGATGACATAACAAGATTCCAGCAAGTCTTAGAGGCAAGGATGCGGGAAGCAAATAGAAATAGTAAGGTTACAAAGTTCATCACAA
GGATTGAAATGGTTCAGAAAAGAAGTATTATGTACTATCAAGAACAGAAATTTCGAACTTTCCTTAAAATTGTCGTTGCTCTTCCTACAATGGTTGCTAGTTGTAGAGGTATTTTAGAAAGGGGCATCACAATTGATGGATTGGGTTCAAGGTGCTTCACTACCTATGAAAGCAATGTTCTGTTTGCACTTCGTTTCATG
ATTGATTGTGATATTGTTGGTGGCAACTGGATTGAACTTCCTCCCTGGTCATACCAAAGATCTCCTAGGAACATGTCTTATTGCCAAATAGAAGTTGATATTCTATATTCTAAATTAATTAGTCATAGCCCAGTTGGCAAGTACTCAAAGATGGCTCCCTTTAGAATTCTTAGTTTTGATATTGAATGTGCTGGTCGAAA
AGGACATTTTCCAGAGCCCAATCATGATCCTGTTATCCAGATTGCCAATTTAGTAACATTGCAAGGAGAAGATCGCCCATTTGTACGAAATGTAATGACCTTGAAGTCGTGCTCTCCAATTGTTGGTGTTGACGTAATGTCATTTGATAATGAAAGAGAGGTGTTGCTTGCATGGAGGGATCTTATTCGTGAAGTTGATC
CAGACCTTATCATTGGATATAATATATGCAAGTTTGACTTGCCATATCTTTTAGAGAGGGCAGAGACATTGAAAATAACAGAGTTCCCTTTCTTGGGCCGTATTAGAAATAGCCGTGTTCGTGTGAGGGACACCTCTTTCTCATCAAGGCAATATGGTACACGAGAGAGTAAGGAAGCAACGATTGAAGGCAGAGTTCAG
TTCGATTTATTTCAGGTGATGCAGAGAGATTACAAGCTCAGTTCGTATTCATTAAATTCCGTTTCTGCACACTTTCTTGGTGAGCAGAAAGAAGATGTGCATCATTCTATCATTTCTGATTTGCATAATGGGAATCCGGAGACAAGACGAAGGCTTGCTGTATATTGTCTGAAGGATGCTTATCTTCCACAGCGGCTCTT
GGATAAACTGATGTTTATATACAATTATGTAGAGATGGCTCGTGTTACTGGTGTTCCTTTGTCATTTTTGCTTTCCAGGGGTCAAAGCATCAAGGTTTTATCTCAGATACTAAGAAAATCAAGGCAAAAAAATCTTCTTGTGCCAAATATTAAAGGCCAAAGCTCTGGTCAGGAGACTTTTGAAGGTGCAACGGTTTTGG
AGGCAAAATCAGGGTTTTACGAGAAGCCAATTGCAACTCTGGACTTTGCATCCTTATATCCATCAATCATGATGGCATATAATCTTTGCTATTGCAGCTTGGTCAGGTCAGATGACCTTGCAAAATTTAATCTCCAACCAGAGTGTGTAAATAAAACACCATCGGGTGAGACTTTTGTCAAACCAACTTTACAGAAGGGC
ATATTACCAGAGATCCTAGAAGAGTTACTGGCTGCCAGGAAAAGAGCCAAGGCAGATTTAAAGGAGGCTAAAGATCCTTTCGAAAAGGCTGTTTTGGATGGTCGACAACTGGCTTTGAAGATCAGTGCAAATTCAGTTTATGGGTTTACTGGTGCTACTGTTGGGCAGTTGCCCTGTTTGGAGATTTCGTCGAGTGTGAC
AAGCTATGGCCGTCAAATGATAGAGCATACAAAGAGGCTAGTTGAAGAAAGGTTCACAATAGTTGGTGGTTACCAATACGATGCTGAGGTTGTATATGGAGATACAGATTCAGTTATGATACAGTTTGGTGTACCAACTATAGAGGAAGCCATGACACTAGGGAGGGAAGCCTCAGATTATATTAGTGCTACATTCACAA
AGCCTATTAAACTAGAATTTGAAAAAATATACTACCCATACTTGTTGATCAGCAAGAAAAGATATGCTGGGCTGTTGTGGACAAAGCCAGATGCATATGACAAAATGGATACTAAAGGCATTGAAACAGTGCGAAGGGACAATTGTCTGTTGGTGAAGAACTTGGTTACAGAGTGTCTTCACAAAATACTCATTGATCGT
GACATACCCGGTGCAGTGCAGTATGTCAAGAACACTATTTCTGACCTGTTAATGAACAGAATGGATTTGTCACTTTTGGTGATAACTAAGGGTCTGACAAAGACTGGAGATGACTACGCAGTCAAGGCAGCGCATGTGGAACTAGCTGAGCGCATGCGGAAGAGGGATGCTGCAACTGCTCCAACTGTGGGTGATCGTGT
TCCATACGTCATCATAAAGGCTGCAAAAGGTGCCAAGGCATATGAGAAATCCGAGGATCCAATTTACGTCCTGGAGAATAACATCCCTATTGATCCACAATACTATCTGGAGAATCAACTGAGCAAGCCACTGTTGAGAATATTTGAGCCCATTTTGAAGAATGCAAGCAAGGAGCTTCTTCATGGAAGTCACACACGAG
CAGTTTCCATATCAACTCCTTCAAATAGTGGAATTATGAAATTTGCCAAGAAACAACTCAGTTGTATTGGTTGTAAAACACCTATCAGTAAAGAAGATCAGACGCTTTGTTCACATTGCAAAGGAAGAGAAGCTGAACTGTATCAGAAAACAGTTGCAAATGTGAGGGAATTAGAAATGCTCTTTGGTAAACTATGGACA
CAATGTCAGCGTTGCCAAGGCTCTCTGCACCAAGATGTTCTTTGTACAAGTCGTGACTGTCCAATATTTTATCGTAGGAAGAAAGCTCAGAAAGACCTAACTGAAGCAGAGgtgcaactagagcgctggcaattttgagGCTATAGATGGGTGGCTATCTTACTCCTTGATGGTGGATGACACAACTAGTGGCCACAACA
AATTAATTGCAACAATTAGATGTTGACTTCATATTTTTTGTTATCAAGTTGAGCAAATCATATGCTACAAGAGACGTAAGATTGTGTCTAATGTGGCTTTGTAACATGTTGCTTGGTAGCAACTTTTTGTGAATAGAGACATTCAATGATGCATGGAATTGTGGCAACTCCTCATCGACAACAAGTGGCTTCAAACTTCA
AGGAAATAACTACATTTCTCTCTAAAAGCAAGACTTATGAACTCTCTACTTTCATGCCATGTTATAAGTGCTAGACATGCTTAATAACAAAACCCCAACGAAATTACATTGTCCAGCACATGAGAAAGATTAGACAATAACACACTTTGATATTATGGAACCAGTGCATTTATTACAATGGGATTTACTTCTCTTATATA
GAGATCAAAATTCTTGGCTAGGTTGAAATATTAACTGGTTGCCAAAGAATATTTCAACCTAGGTTGCCAAAGGTCTTACCCCAACAATAAGAAGCTGATTATGAGGAAACATTTGGTGCACCC
Intron 6 GTAAGCTGAC ... TCAATGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.94 | 58.2 | 8.4 | 10 |
| A2 | 8.34 | 34.3 | 1.3 | 3.5 |
| A3 | 11.72 | 47.8 | 2.8 | 7.5 |
| A4 | 24.72 | 25.7 | 8.8 | 8.8 |
| A5 | 13.16 | 13.6 | 0.8 | 2.5 |
| A6 | 15.69 | 67.2 | 3.8 | 16 |
| A7 | 14.24 | 153 | 5 | 29 |
| A8 | 12.6 | 201 | 8.8 | 34 |
| A9 | 10.49 | 120.3 | 7.8 | 16 |
| A10 | 6.64 | 73 | 4.3 | 5.5 |
>TRINITY_DN120809_c7_g1_i16 from sample A1 / Example spliced isoformGTTTGGGTGTTTACAATGCATCAAATTTTCTACAATGATAGAATTTTAAGCCTATTCAGTCTGATATTGAGGCTATATTACTTCTAGTAGCTAATAATTTGGACTTCTTTTGCAAAGAATCATCTATGACCAAGGTTGTCCATCATAAACGATATTTGTTGTTCATTTTACAGGATCTTATTCGTGAAGTTGATCCAGAC
CTTATCATTGGATATAATATATGCAAGTTTGACTTGCCATATCTTTTAGAGAGGGCAGAGACATTGAAAATAACAGAGTTCCCTTTCTTGGGCCGTATTAGAAATAGCCGTGTTCGTGTGAGGGACACCTCTTTCTCATCAAGGCAATATGGTACACGAGAGAGTAAGGAAGCAACGATTGAAGGCAGAGTTCAGTTCGA
TTTATTTCAGGTGATGCAGAGAGATTACAAGCTCAGTTCGTATTCATTAAATTCCGTTTCTGCACACTTTCTTGGTGAGCAGAAAGAAGATGTGCATCATTCTATCATTTCTGATTTGCATAATGGGAATCCGGAGACAAGACGAAGGCTTGCTGTATATTGTCTGAAGGATGCTTATCTTCCACAGCGGCTCTTGGATA
AACTGATGTTTATATACAATTATGTAGAGATGGCTCGTGTTACTGGTGTTCCTTTGTCATTTTTGCTTTCCAGGGGTCAAAGCATCAAGGTTTTATCTCAGATACTAAGAAAATCAAGGCAAAAAAATCTTCTTGTGCCAAATATTAAAGCCCAAAGCTCTGGTCAGGAGACTTTTGAAGGTGCAACGGTTTTGGAGGCA
AAATCAGGGTTTTACGAGAAGCCAATTGCAACTCTGGACTTTGCATCCTTATATCCATCAATCATGATGGCATATAATCTTTGCTATTGCAGCTTGGTCAGGTCAGATGACCTTGCAAAATTTAATCTCCAACCAGAGTGTGTAAATAAAACACCATCGGGTGAGACTTTTGTCAAACCAACTTTACAGAAGGGCATATT
ACCAGAGATCCTAGAAGAGTTACTGGCTGCCAGGAAAAGAGCCAAGGCAGATTTAAAGGAGGCTAAAGATCCTTTCGAAAAGGCTGTTTTGGATGGTCGACAACTGGCTTTGAAGATCAGTGCAAATTCAGTTTATGGGTTTACTGGTGCTACTGTTGGGCAGTTGCCCTGTTTGGAGATTTCGTCGAGTGTGACAAGCT
ATGGCCGTCAAATGATAGAGCATACAAAGAGGCTAGTTGAAGAAAGGTTCACAATAGTTGGTGGTTACCAATACGATGCTGAGGTTGTATATGGAGATACAGATTCAGTTATGATACAGTTTGGTGTACCAACTATAGAGGAAGCCATGACACTAGGGAGGGAAGCCTCAGATTATATTAGTGCTACATTCACAAAGCCT
ATTAAACTAGAATTTGAAAAAATATACTACCCATACTTGTTGATCAGCAAGAAAAGATATGCTGGGCTGTTGTGGACAAAGCCAGATGCATATGACAAAATGGATACTAAAGGCATTGAAACAGTGCGAAGGGACAATTGTCTGTTGGTGAAGAACTTGGTTACAGAGTGTCTTCACAAAATACTCATTGATCGTGACAT
ACCCGGTGCAGTGCAGTATGTCAAGAACACTATTTCTGACCTGTTAATGAACAGAATGGATTTGTCACTTTTGGTGATAACTAAGGGTCTGACAAAGACTGGAGATGACTACGCAGTCAAGGCAGCGCATGTGGAACTAGCTGAGCGCATGCGGAAGAGGGATGCTGCAACTGCTCCAACTGTGGGTGATCGTGTTCCAT
ACGTCATCATAAAGGCTGCAAAAGGTGCCAAGGCATATGAGAAATCCGAGGATCCAATTTACGTCCTGGAGAATAACATCCCTATTGATCCACAATACTATCTGGAGAATCAACTGAGCAAGCCACTGTTGAGAATATTTGAGCCCATTTTGAAGAATGCAAGCAAGGAGCTTCTTCATGGAAGTCACACACGAGCAGTT
TCCATATCAACTCCTTCAAATAGTGGAATTATGAAATTTGCCAAGAAACAACTCAGTTGTATTGGTTGTAAAACACCTATCAGTAAAGAAGATCAGACGCTTTGTTCACATTGCAAAGGAAGAGAAGCTGAACTGTATCAGAAAACAGTTGCAAATGTGAGGGAATTAGAAATGCTCTTTGGTAAACTATGGACACAATG
TCAGCGTTGCCAAGGCTCTCTGCACCAAGATGTTCTTTGTACAAGTCGTGACTGTCCAATATTTTATCGTAGGAAGAAAGCTCAGAAAGACCTAACTGAAGCAGAGGTGCAACTAGAGCGCTGGCAATTTTGAGGTTACTGCATGTGTAGCTTGTACTAATTTTCTTGTTGTCCAATGTTTCTGTTTTCCTGAATTTTCT
CTGGTGTATTTTTCTCTGGTTTCATGGACCTGGGAATTTATTTGGTCCCCATGTCAAGATGAGCCATGGTTGATTTAATGTACAGTAATTGGCAAAGTACTTGTTATTTAATGTAAACCGGATAGATATTCTTTTCTCCTTGCAAATGAGATGGAGAAAAAGTCAAAATGGATAGATATGTCCCAAAGCAGACCCT
>TRINITY_DN120809_c7_g1_i20 from sample A1 / Example unspliced isoform:TGTATTTGGGTTCCTTGCTTATTGTAGTGCACAATTGGGATACAGCTATTGTTTTGATTCAGCGTTTTAGAAAGTAAATAGGGTTCATATTTTTGATACTGAAATCTACGAGTTGCAGTAAAGAAGATCAGACGCTTTGTTCACATTGCAAAGGAAGAGAAGCTGAACTGTATCAGAAAACAGTTGCAAATGgtaagctg
actttctaataccagtactctttattggagaacttaaagtaggcgttatgtctatttttctcgcctaatattctctatcatgtggcactaatatttgatcaatgtcagTGAGGGAATTAGAAATGCTCTTTGGTAAACTATGGACACAATGTCAGCGTTGCCAAGGCTCTCTGCACCAAGATGTTCTTTGTACAAGTCGT
GACTGTCCAATATTTTATCGTAGGAAGAAAGCTCAGAAAGACCTAACTGAAGCAGAGGTGCAACTAGAGCGCTGGCAATTTTGAGG
Intron 7 GTAATAATTA ... TTGGGTTAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.57 | 107 | 45 | 21 |
| A2 | 18.95 | 77 | 26 | 10 |
| A3 | 13.61 | 73 | 13 | 10 |
| A4 | 20.39 | 41 | 14 | 7 |
| A5 | 15.38 | 22 | 3 | 5 |
| A6 | 14.79 | 72 | 10 | 15 |
| A7 | 20.5 | 159 | 49 | 33 |
| A8 | 17.74 | 160 | 34 | 35 |
| A9 | 14.85 | 152 | 24 | 29 |
| A10 | 18.81 | 123 | 24 | 33 |
>TRINITY_DN120809_c7_g1_i16 from sample A1 / Example spliced isoformGTTTGGGTGTTTACAATGCATCAAATTTTCTACAATGATAGAATTTTAAGCCTATTCAGTCTGATATTGAGGCTATATTACTTCTAGTAGCTAATAATTTGGACTTCTTTTGCAAAGAATCATCTATGACCAAGGTTGTCCATCATAAACGATATTTGTTGTTCATTTTACAGGATCTTATTCGTGAAGTTGATCCAGAC
CTTATCATTGGATATAATATATGCAAGTTTGACTTGCCATATCTTTTAGAGAGGGCAGAGACATTGAAAATAACAGAGTTCCCTTTCTTGGGCCGTATTAGAAATAGCCGTGTTCGTGTGAGGGACACCTCTTTCTCATCAAGGCAATATGGTACACGAGAGAGTAAGGAAGCAACGATTGAAGGCAGAGTTCAGTTCGA
TTTATTTCAGGTGATGCAGAGAGATTACAAGCTCAGTTCGTATTCATTAAATTCCGTTTCTGCACACTTTCTTGGTGAGCAGAAAGAAGATGTGCATCATTCTATCATTTCTGATTTGCATAATGGGAATCCGGAGACAAGACGAAGGCTTGCTGTATATTGTCTGAAGGATGCTTATCTTCCACAGCGGCTCTTGGATA
AACTGATGTTTATATACAATTATGTAGAGATGGCTCGTGTTACTGGTGTTCCTTTGTCATTTTTGCTTTCCAGGGGTCAAAGCATCAAGGTTTTATCTCAGATACTAAGAAAATCAAGGCAAAAAAATCTTCTTGTGCCAAATATTAAAGCCCAAAGCTCTGGTCAGGAGACTTTTGAAGGTGCAACGGTTTTGGAGGCA
AAATCAGGGTTTTACGAGAAGCCAATTGCAACTCTGGACTTTGCATCCTTATATCCATCAATCATGATGGCATATAATCTTTGCTATTGCAGCTTGGTCAGGTCAGATGACCTTGCAAAATTTAATCTCCAACCAGAGTGTGTAAATAAAACACCATCGGGTGAGACTTTTGTCAAACCAACTTTACAGAAGGGCATATT
ACCAGAGATCCTAGAAGAGTTACTGGCTGCCAGGAAAAGAGCCAAGGCAGATTTAAAGGAGGCTAAAGATCCTTTCGAAAAGGCTGTTTTGGATGGTCGACAACTGGCTTTGAAGATCAGTGCAAATTCAGTTTATGGGTTTACTGGTGCTACTGTTGGGCAGTTGCCCTGTTTGGAGATTTCGTCGAGTGTGACAAGCT
ATGGCCGTCAAATGATAGAGCATACAAAGAGGCTAGTTGAAGAAAGGTTCACAATAGTTGGTGGTTACCAATACGATGCTGAGGTTGTATATGGAGATACAGATTCAGTTATGATACAGTTTGGTGTACCAACTATAGAGGAAGCCATGACACTAGGGAGGGAAGCCTCAGATTATATTAGTGCTACATTCACAAAGCCT
ATTAAACTAGAATTTGAAAAAATATACTACCCATACTTGTTGATCAGCAAGAAAAGATATGCTGGGCTGTTGTGGACAAAGCCAGATGCATATGACAAAATGGATACTAAAGGCATTGAAACAGTGCGAAGGGACAATTGTCTGTTGGTGAAGAACTTGGTTACAGAGTGTCTTCACAAAATACTCATTGATCGTGACAT
ACCCGGTGCAGTGCAGTATGTCAAGAACACTATTTCTGACCTGTTAATGAACAGAATGGATTTGTCACTTTTGGTGATAACTAAGGGTCTGACAAAGACTGGAGATGACTACGCAGTCAAGGCAGCGCATGTGGAACTAGCTGAGCGCATGCGGAAGAGGGATGCTGCAACTGCTCCAACTGTGGGTGATCGTGTTCCAT
ACGTCATCATAAAGGCTGCAAAAGGTGCCAAGGCATATGAGAAATCCGAGGATCCAATTTACGTCCTGGAGAATAACATCCCTATTGATCCACAATACTATCTGGAGAATCAACTGAGCAAGCCACTGTTGAGAATATTTGAGCCCATTTTGAAGAATGCAAGCAAGGAGCTTCTTCATGGAAGTCACACACGAGCAGTT
TCCATATCAACTCCTTCAAATAGTGGAATTATGAAATTTGCCAAGAAACAACTCAGTTGTATTGGTTGTAAAACACCTATCAGTAAAGAAGATCAGACGCTTTGTTCACATTGCAAAGGAAGAGAAGCTGAACTGTATCAGAAAACAGTTGCAAATGTGAGGGAATTAGAAATGCTCTTTGGTAAACTATGGACACAATG
TCAGCGTTGCCAAGGCTCTCTGCACCAAGATGTTCTTTGTACAAGTCGTGACTGTCCAATATTTTATCGTAGGAAGAAAGCTCAGAAAGACCTAACTGAAGCAGAGGTGCAACTAGAGCGCTGGCAATTTTGAGGTTACTGCATGTGTAGCTTGTACTAATTTTCTTGTTGTCCAATGTTTCTGTTTTCCTGAATTTTCT
CTGGTGTATTTTTCTCTGGTTTCATGGACCTGGGAATTTATTTGGTCCCCATGTCAAGATGAGCCATGGTTGATTTAATGTACAGTAATTGGCAAAGTACTTGTTATTTAATGTAAACCGGATAGATATTCTTTTCTCCTTGCAAATGAGATGGAGAAAAAGTCAAAATGGATAGATATGTCCCAAAGCAGACCCT
>TRINITY_DN120809_c7_g1_i4 from sample A1 / Example unspliced isoform:ACAAAATCACATCTAAAAATTAAGAAAAAAAAATAGATACTAGATGTTTCAACTTGACAAAATCACATCAATTTATAAGGTGTCTAAAATGGCGGGAAAGCCATTGCAGGAATAGGTGTTCCCCGCTTGTCCTTATGCTGGTACGCCATGGTTCACGTTCAAAACAGGTTATAGCCTGAGTCCAGTCCAGGAACCTGCCA
CTGCCCATTTCTTTCTTTTCTTCTACAGGTTTACACAGAGGGGGAAGCAAGGGCAAACCCTTGGAAATATCGATCTCATGGAGGGCAAACGGCGTTTTGGGGGTCCGCCCTCTGCTCCTAATCCTCCTTCGAAGAGGTTCCAGCCCTCAGAGGAGGAGGATGAAGAATTGGACGAGGACGTGTTTCTCGAAGAAACCCTT
TTGAGGGACGAGGAGCTCCTGCAAGACAGCGGGGTGGAGGGCCTCGCTTCTCGCCTCTCTAAGTGGAAGAGACCGCCTTTGCCGTCCGCTTATGCTACTTCTCCCTCTCAAAGCATAGAGTTCCAGCAGTTGGATATTGATTACATTATAGGTGAAAGTCACCGGGAGATTTTGCCTCATTCAACTGGACAAGCAGCAAT
TTTGCGGATATTTGGTGTGACCCAAGAAGGTTACAGTGTATGCTGTCTTGTACATGGTTTTCAACCATACTTTTACATCAGTTGCCTTGATGGGATGAGTCCAGATGACATAACAAGATTCCAGCAAGTCTTAGAGGCAAGGATGCGGGAAGCAAATAGAAATAGTAAGGTTACAAAGTTCATCACAAGGATTGAAATGG
TTCAGAAAAGAAGTATTATGTACTATCAAGAACAGAAATTTCGAACTTTCCTTAAAATTGTCGTTGCTCTTCCTACAATGGTTGCTAGTTGTAGAGGTATTTTAGAAAGGGGCATCACAATTGATGGATTGGGTTCAAGGTGCTTCACTACCTATGAAAGCAATGTTCTGTTTGCACTTCGTTTCATGATTGATTGTGAT
ATTGTTGGTGGCAACTGGATTGAACTTCCTCCCTGGTCATACCAAAGATCTCCTAGGAACATGTCTTATTGCCAAATAGAAGTTGATATTCTATATTCTAAATTAATTAGTCATAGCCCAGTTGGCAAGTACTCAAAGATGGCTCCCTTTAGAATTCTTAGTTTTGATATTGAATGTGCTGGTCGAAAAGGACATTTTCC
AGAGCCCAATCATGATCCTGTTATCCAGATTGCCAATTTAGTAACATTGCAAGGAGAAGATCGCCCATTTGTACGAAATGTAATGACCTTGAAGTCGTGCTCTCCAATTGTTGGTGTTGACGTAATGTCATTTGATAATGAAAGAGAGGTGTTGCTTGCATGGAGGGATCTTATTCGTGAAGTTGATCCAGACCTTATCA
TTGGATATAATATATGCAAGTTTGACTTGCCATATCTTTTAGAGAGGGCAGAGACATTGAAAATAACAGAGTTCCCTTTCTTGGGCCGTATTAGAAATAGCCGTGTTCGTGTGAGGGACACCTCTTTCTCATCAAGGCAATATGGTACACGAGAGAGTAAGGAAGCAACGATTGAAGGCAGAGTTCAGTTCGATTTATTT
CAGGTGATGCAGAGAGATTACAAGCTCAGTTCGTATTCATTAAATTCCGTTTCTGCACACTTTCTTGGTGAGCAGAAAGAAGATGTGCATCATTCTATCATTTCTGATTTGCATAATGGGAATCCGGAGACAAGACGAAGGCTTGCTGTATATTGTCTGAAGGATGCTTATCTTCCACAGCGGCTCTTGGATAAACTGAT
GTTTATATACAATTATGTAGAGATGGCTCGTGTTACTGGTGTTCCTTTGTCATTTTTGCTTTCCAGGGGTCAAAGCATCAAGGTTTTATCTCAGATACTAAGAAAATCAAGGCAAAAAAATCTTCTTGTGCCAAATATTAAAGCCCAAAGCTCTGGTCAGGAGACTTTTGAAGGTGCAACGGTTTTGGAGGCAAAATCAG
GGTTTTACGAGAAGCCAATTGCAACTCTGGACTTTGCATCCTTATATCCATCAATCATGATGGCATATAATCTTTGCTATTGCAGCTTGGTCAGGTCAGATGACCTTGCAAAATTTAATCTCCAACCAGAGTGTGTAAATAAAACACCATCGGGTGAGACTTTTGTCAAACCAACTTTACAGAAGGGCATATTACCAGAG
ATCCTAGAAGAGTTACTGGCTGCCAGGAAAAGAGCCAAGGCAGATTTAAAGGAGGCTAAAGATCCTTTCGAAAAGGCTGTTTTGGATGGTCGACAACTGGCTTTGAAGATCAGTGCAAATTCAGTTTATGGGTTTACTGGTGCTACTGTTGGGCAGTTGCCCTGTTTGGAGATTTCGTCGAGTGTGACAAGCTATGGCCG
TCAAATGATAGAGCATACAAAGAGGCTAGTTGAAGAAAGGTTCACAATAGTTGGTGGTTACCAATACGATGCTGAGGTTGTATATGGAGATACAGATTCAGTTATGATACAGTTTGGTGTACCAACTATAGAGGAAGCCATGACACTAGGGAGGGAAGCCTCAGATTATATTAGTGCTACATTCACAAAGCCTATTAAAC
TAGAATTTGAAAAAATATACTACCCATACTTGTTGATCAGCAAGAAAAGATATGCTGGGCTGTTGTGGACAAAGCCAGATGCATATGACAAAATGGATACTAAAGGCATTGAAACAGTGCGAAGGGACAATTGTCTGTTGGTGAAGAACTTGGTTACAGAGTGTCTTCACAAAATACTCATTGATCGTGACATACCCGGT
GCAGTGCAGTATGTCAAGAACACTATTTCTGACCTGTTAATGAACAGAATGGATTTGTCACTTTTGGTGATAACTAAGGGTCTGACAAAGACTGGAGATGACTACGCAGTCAAGGCAGCGCATGTGGAACTAGCTGAGCGCATGCGGAAGAGGGATGCTGCAACTGCTCCAACTGTGGGTGATCGTGTTCCATACGTCAT
CATAAAGGCTGCAAAAGGTGCCAAGgtaataattaagcccttttgtgctcagtataagtctccatattgcactcaaagatggtcagttcaattcttttgccatgttttctttggaggcatatagtacagcaggattaaggatataatggttaatgtgtttacttgggttaagGCATATGAGAAATCCGAGGATCCAATTT
ACGTCCTGGAGAATAACATCCCTATTGATCCACAATACTATCTGGAGAATCAACTGAGCAAGCCACTGTTGAGAATATTTGAGCCCATTTTGAAGAATGCAAGCAAGGAGCTTCTTCATGGAAGTCACACACGAGCAGTTTCCATATCAACTCCTTCAAATAGTGGAATTATGAAATTTGCCAAGAAACAACTCAGTTGT
ATTGGTTGTAAAACACCTATCAGTAAAGAAGATCAGACGCTTTGTTCACATTGCAAAGGAAGAGAAGCTGAACTGTATCAGAAAACAGTTGCAAATGTGAGGGAATTAGAAATGCTCTTTGGTAAACTATGGACACAATGTCAGCGTTGCCAAGGCTCTCTGCACCAAGATGTTCTTTGTACAAGTCGTGACTGTCCAAT
ATTTTATCGTAGGAAGAAAGCTCAGAAAGACCTAACTGAAGCAGAGGTGCAACTAGAGCGCTGGCAATTTTGAGGTTACTGCATGTGTAGCTTGTACTAATTTTCTTGTTGTCCAATGTTTCTGTTTTCCTGAATTTTCTCTGGTGTATTTTTCTCTGGTTTCATGGACCTGGGAATTTATTTGGTCCCCATGTCAAGAT
GAGCCATGGTTGATTTAATGTACAGTAATTGGCAAAGTACTTGTTATTTAATGTAAACCGGATAGATATTCTTTTCTCCTTGCAAATGAGATGGAGAAAAAGTCAAAATGGATAGATATGTCCCAAAGCAGACCCT
Intron 8 GTGGTTAACT ... GCTTGTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.27 | 44 | 19 | 14 |
| A2 | 21.01 | 47 | 13 | 12 |
| A3 | 22.48 | 50 | 20 | 9 |
| A4 | 21.28 | 37 | 6 | 14 |
| A5 | 18.64 | 24 | 1 | 10 |
| A6 | 11.76 | 15 | 2 | 2 |
| A7 | 23.23 | 38 | 6 | 17 |
| A8 | 23.29 | 28 | 4 | 13 |
| A9 | 18.52 | 33 | 6 | 9 |
| A10 | 27.27 | 24 | 13 | 5 |
>TRINITY_DN120809_c7_g1_i16 from sample A1 / Example spliced isoformGTTTGGGTGTTTACAATGCATCAAATTTTCTACAATGATAGAATTTTAAGCCTATTCAGTCTGATATTGAGGCTATATTACTTCTAGTAGCTAATAATTTGGACTTCTTTTGCAAAGAATCATCTATGACCAAGGTTGTCCATCATAAACGATATTTGTTGTTCATTTTACAGGATCTTATTCGTGAAGTTGATCCAGAC
CTTATCATTGGATATAATATATGCAAGTTTGACTTGCCATATCTTTTAGAGAGGGCAGAGACATTGAAAATAACAGAGTTCCCTTTCTTGGGCCGTATTAGAAATAGCCGTGTTCGTGTGAGGGACACCTCTTTCTCATCAAGGCAATATGGTACACGAGAGAGTAAGGAAGCAACGATTGAAGGCAGAGTTCAGTTCGA
TTTATTTCAGGTGATGCAGAGAGATTACAAGCTCAGTTCGTATTCATTAAATTCCGTTTCTGCACACTTTCTTGGTGAGCAGAAAGAAGATGTGCATCATTCTATCATTTCTGATTTGCATAATGGGAATCCGGAGACAAGACGAAGGCTTGCTGTATATTGTCTGAAGGATGCTTATCTTCCACAGCGGCTCTTGGATA
AACTGATGTTTATATACAATTATGTAGAGATGGCTCGTGTTACTGGTGTTCCTTTGTCATTTTTGCTTTCCAGGGGTCAAAGCATCAAGGTTTTATCTCAGATACTAAGAAAATCAAGGCAAAAAAATCTTCTTGTGCCAAATATTAAAGCCCAAAGCTCTGGTCAGGAGACTTTTGAAGGTGCAACGGTTTTGGAGGCA
AAATCAGGGTTTTACGAGAAGCCAATTGCAACTCTGGACTTTGCATCCTTATATCCATCAATCATGATGGCATATAATCTTTGCTATTGCAGCTTGGTCAGGTCAGATGACCTTGCAAAATTTAATCTCCAACCAGAGTGTGTAAATAAAACACCATCGGGTGAGACTTTTGTCAAACCAACTTTACAGAAGGGCATATT
ACCAGAGATCCTAGAAGAGTTACTGGCTGCCAGGAAAAGAGCCAAGGCAGATTTAAAGGAGGCTAAAGATCCTTTCGAAAAGGCTGTTTTGGATGGTCGACAACTGGCTTTGAAGATCAGTGCAAATTCAGTTTATGGGTTTACTGGTGCTACTGTTGGGCAGTTGCCCTGTTTGGAGATTTCGTCGAGTGTGACAAGCT
ATGGCCGTCAAATGATAGAGCATACAAAGAGGCTAGTTGAAGAAAGGTTCACAATAGTTGGTGGTTACCAATACGATGCTGAGGTTGTATATGGAGATACAGATTCAGTTATGATACAGTTTGGTGTACCAACTATAGAGGAAGCCATGACACTAGGGAGGGAAGCCTCAGATTATATTAGTGCTACATTCACAAAGCCT
ATTAAACTAGAATTTGAAAAAATATACTACCCATACTTGTTGATCAGCAAGAAAAGATATGCTGGGCTGTTGTGGACAAAGCCAGATGCATATGACAAAATGGATACTAAAGGCATTGAAACAGTGCGAAGGGACAATTGTCTGTTGGTGAAGAACTTGGTTACAGAGTGTCTTCACAAAATACTCATTGATCGTGACAT
ACCCGGTGCAGTGCAGTATGTCAAGAACACTATTTCTGACCTGTTAATGAACAGAATGGATTTGTCACTTTTGGTGATAACTAAGGGTCTGACAAAGACTGGAGATGACTACGCAGTCAAGGCAGCGCATGTGGAACTAGCTGAGCGCATGCGGAAGAGGGATGCTGCAACTGCTCCAACTGTGGGTGATCGTGTTCCAT
ACGTCATCATAAAGGCTGCAAAAGGTGCCAAGGCATATGAGAAATCCGAGGATCCAATTTACGTCCTGGAGAATAACATCCCTATTGATCCACAATACTATCTGGAGAATCAACTGAGCAAGCCACTGTTGAGAATATTTGAGCCCATTTTGAAGAATGCAAGCAAGGAGCTTCTTCATGGAAGTCACACACGAGCAGTT
TCCATATCAACTCCTTCAAATAGTGGAATTATGAAATTTGCCAAGAAACAACTCAGTTGTATTGGTTGTAAAACACCTATCAGTAAAGAAGATCAGACGCTTTGTTCACATTGCAAAGGAAGAGAAGCTGAACTGTATCAGAAAACAGTTGCAAATGTGAGGGAATTAGAAATGCTCTTTGGTAAACTATGGACACAATG
TCAGCGTTGCCAAGGCTCTCTGCACCAAGATGTTCTTTGTACAAGTCGTGACTGTCCAATATTTTATCGTAGGAAGAAAGCTCAGAAAGACCTAACTGAAGCAGAGGTGCAACTAGAGCGCTGGCAATTTTGAGGTTACTGCATGTGTAGCTTGTACTAATTTTCTTGTTGTCCAATGTTTCTGTTTTCCTGAATTTTCT
CTGGTGTATTTTTCTCTGGTTTCATGGACCTGGGAATTTATTTGGTCCCCATGTCAAGATGAGCCATGGTTGATTTAATGTACAGTAATTGGCAAAGTACTTGTTATTTAATGTAAACCGGATAGATATTCTTTTCTCCTTGCAAATGAGATGGAGAAAAAGTCAAAATGGATAGATATGTCCCAAAGCAGACCCT
>TRINITY_DN120809_c7_g1_i18 from sample A1 / Example unspliced isoform:ACAAAATCACATCTAAAAATTAAGAAAAAAAAATAGATACTAGATGTTTCAACTTGACAAAATCACATCAATTTATAAGGTGTCTAAAATGGCGGGAAAGCCATTGCAGGAATAGGTGTTCCCCGCTTGTCCTTATGCTGGTACGCCATGGTTCACGTTCAAAACAGGTTATAGCCTGAGTCCAGTCCAGGAACCTGCCA
CTGCCCATTTCTTTCTTTTCTTCTACAGGTTTACACAGAGGGGGAAGCAAGGGCAAACCCTTGGAAATATCGATCTCATGGAGGGCAAACGGCGTTTTGGGGGTCCGCCCTCTGCTCCTAATCCTCCTTCGAAGAGGTTCCAGCCCTCAGAGGAGGAGGATGAAGAATTGGACGAGGACGTGTTTCTCGAAGAAACCCTT
TTGAGGGACGAGGAGCTCCTGCAAGACAGCGGGGTGGAGGGCCTCGCTTCTCGCCTCTCTAAGTGGAAGAGACCGCCTTTGCCGTCCGCTTATGCTACTTCTCCCTCTCAAAGCATAGAGTTCCAGCAGTTGGATATTGATTACATTATAGGTGAAAGTCACCGGGAGATTTTGCCTCATTCAACTGGACAAGCAGCAAT
TTTGCGGATATTTGGTGTGACCCAAGAAGGTTACAGTGTATGCTGTCTTGTACATGGTTTTCAACCATACTTTTACATCAGTTGCCTTGATGGGATGAGTCCAGATGACATAACAAGATTCCAGCAAGTCTTAGAGGCAAGGATGCGGGAAGCAAATAGAAATAGTAAGGTTACAAAGTTCATCACAAGGATTGAAATGG
TTCAGAAAAGAAGTATTATGTACTATCAAGAACAGAAATTTCGAACTTTCCTTAAAATTGTCGTTGCTCTTCCTACAATGGTTGCTAGTTGTAGAGGTATTTTAGAAAGGGGCATCACAATTGATGGATTGGGTTCAAGGTGCTTCACTACCTATGAAAGCAATGTTCTGTTTGCACTTCGTTTCATGATTGATTGTGAT
ATTGTTGGTGGCAACTGGATTGAACTTCCTCCCTGGTCATACCAAAGATCTCCTAGGAACATGTCTTATTGCCAAATAGAAGTTGATATTCTATATTCTAAATTAATTAGTCATAGCCCAGTTGGCAAGTACTCAAAGATGGCTCCCTTTAGAATTCTTAGTTTTGATATTGAATGTGCTGGTCGAAAAGGACATTTTCC
AGAGCCCAATCATGATCCTGTTATCCAGATTGCCAATTTAGTAACATTGCAAGGAGAAGATCGCCCATTTGTACGAAATGTAATGACCTTGAAGTCGTGCTCTCCAATTGTTGGTGTTGACGTAATGTCATTTGATAATGAAAGAGAGGTGTTGCTTGCATGGAGGGATCTTATTCGTGAAGTTGATCCAGACCTTATCA
TTGGATATAATATATGCAAGTTTGACTTGCCATATCTTTTAGAGAGGGCAGAGACATTGAAAATAACAGAGTTCCCTTTCTTGGGCCGTATTAGAAATAGCCGTGTTCGTGTGAGGGACACCTCTTTCTCATCAAGGCAATATGGTACACGAGAGAGTAAGGAAGCAACGATTGAAGGCAGAGTTCAGTTCGATTTATTT
CAGGTGATGCAGAGAGATTACAAGCTCAGTTCGTATTCATTAAATTCCGTTTCTGCACACTTTCTTGGTGAGCAGAAAGAAGATGTGCATCATTCTATCATTTCTGATTTGCATAATGGGAATCCGGAGACAAGACGAAGGCTTGCTGTATATTGTCTGAAGGATGCTTATCTTCCACAGCGGCTCTTGGATAAACTGAT
GTTTATATACAATTATGTAGAGATGGCTCGTGTTACTGGTGTTCCTTTGTCATTTTTGCTTTCCAGGGGTCAAAGCATCAAGGTTTTATCTCAGATACTAAGAAAATCAAGGCAAAAAAATCTTCTTGTGCCAAATATTAAAGCCCAAAGCTCTGGTCAGGAGACTTTTGAAGGTGCAACGGTTTTGGAGGCAAAATCAG
GGTTTTACGAGAAGCCAATTGCAACTCTGGACTTTGCATCCTTATATCCATCAATCATGATGGCATATAATCTTTGCTATTGCAGCTTGGTCAGGTCAGATGACCTTGCAAAATTTAATCTCCAACCAGAGTGTGTAAATAAAACACCATCGGGTGAGACTTTTGTCAAACCAACTTTACAGAAGGGCATATTACCAGAG
ATCCTAGAAGAGTTACTGGCTGCCAGGAAAAGAGCCAAGGCAGATTTAAAGgtggttaactacatgcttcctatgttcatgtttcatgcttgtatcttttcacttaccatctcagtttttaacttcctgtaagcttgtttagGAGGCTAAAGATCCTTTCGAAAAGGCTGTTTTGGATGGTCGACAACTGGCTTTGAAGA
TCAGTGCAAATTCAGTTTATGGGTTTACTGGTGCTACTGTTGGGCAGTTGCCCTGTTTGGAGATTTCGTCGAGTGTGACAAGCTATGGCCGTCAAATGATAGAGCATACAAAGAGGCTAGTTGAAGAAAGGTTCACAATAGTTGGTGGTTACCAATACGATGCTGAGGTTGTATATGGAGATACAGATTCAGTTATGATA
CAGTTTGGTGTACCAACTATAGAGGAAGCCATGACACTAGGGAGGGAAGCCTCAGATTATATTAGTGCTACATTCACAAAGCCTATTAAACTAGAATTTGAAAAAATATACTACCCATACTTGTTGATCAGCAAGAAAAGATATGCTGGGCTGTTGTGGACAAAGCCAGATGCATATGACAAAATGGATACTAA