NA ----> NA
Intron 1 GTATGTAAAT ... TTTGGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 76.19 | 5 | 6 | 16 |
| A2 | 100 | 0 | 6 | 5 |
| A3 | 85 | 3 | 7 | 17 |
| A4 | 82.61 | 4 | 3 | 19 |
| A5 | 75 | 1 | 0 | 3 |
| A6 | 77.27 | 15 | 18 | 51 |
| A7 | 68.83 | 24 | 4 | 53 |
| A8 | 70.83 | 7 | 2 | 17 |
| A9 | 79.31 | 6 | 10 | 23 |
| A10 | 75.76 | 16 | 18 | 50 |
>TRINITY_DN47373_c0_g1_i3 from sample A7 / Example spliced isoformCGATGATGGTAGAAGAGAAGGGAAAAGGGACATACTTCATCTTCGCGGCTTCGAATGACGATTCAGGGCGATTTCAGTTCAAGAAATTTCTAGAAGTTCTGCTACTGCCGTTAAATTCTTCGCCATGGTGATTCTCAGAGTGCTCTTAGGGGCAAATTTCAGTTGAATTGATGAGATTTTCGAGTTGGTTACCGGGCAAG
CAAACTCGAGATAACGGAGCTCTGAACAAGTCCACCGGACAAATTTGGGTTCGAATTTGTTTATAAACTGTTTTGTAAACTCGTAAGAGGCCTTTGACAGCAAGACGTGACAAAGTGGTAGGGAGTGCGGCGATTAAGGCGGGGCAGAGTGTGGAACATTTGAGGCGATCTAGCAGTGAGCTGTGTTCAGCAGGTCAGAA
CAAGTTGGTGTCTTGGAGTTTATCAGCGTCAGGGTAGCAGGTTTCGAGGGAAAGGTATGCCCACAAGTGCTGGTGTTCGAGAGGCTCTGGACAGACGACGAAACTGGTAGAGAACCGTTCCCTTTGAAAAATTCCTTTGGCGTAATAACATGGATAGCCATGGCTCCTGAACACAAAGAAATCGGAAGAAGCAGAGCGCC
ACTCGTAGATTGTACAAATACTCCGCCCATATCCATATCCAGACCTCGAAGAGCCCGCGGTGCCTATGCCTCCCCCTCCATTAACACTCAATTCACCCTCAAACGCCCGGCCGACCCCGATAACCGGGCGAACAATGTCGAGGATGCAGCTACTCCGACAGGCCACCTGAGAGAGAACAGCAGTTCCGATCACAACTTTA
GCACTCCGCAGGCGGTTTCGCCGGCCGTGGTCACTTCTCAGCTCACGGAGGAAAACGAGGACGAGGGTTTAAGTGATTTTAGGGTTTACAACAAACGCTGCCAGACAAAGGGCAGGGCTTTGGAGACGTTGTCGTTAAGCTGCCCACCTCTACGGAGGCCTCCCAGTGAAAGCCCTGCAGTGGAGAGGAGTCGTCAATAC
AGAAATCAGGGTGCTGATGTTCGGAAGAGGCGTCCAATCGATGCTTCAACTGATTTGCCCGAATCAGGAAGGCCAAAGGTGCAGAGACGACGAAACTCGATGCCAAAAGATGGGGGAGGATGCACATTGCCTGAAAGTTTTGTCCATGAACAGCAAGCTCACTATGCAGAGGTTGATGCATTTGTCCTCCAGGAAGAGGA
ACTGTCAGATGACAGTTCTGTATAGTACCAACTGAAATATTTGTAACTTGTCTATCTAGTTGATTGTTTTTGGCAATGGTAAATTGTTTTGAAGGTTTTTATTGCTGCAGAGATTCTTGCAGATGTATTTACAGGCCTCATTGATTTTTTGGCATTGGTAGCAGTGGATTAGCAATTCCACTCATTGCCAAAGCAACATG
ATCTAGTCCAGTATTCTGTCAACGTGCCCTTTTTGTCTCTTGTCTGTATCAGTAAAGGGAGTTGGGGCAAATGCAAATATAAGCTATAATTTGATTTTTGACTGTAACTACTTATAGTTGGTTTGACGGTCATGTACCATCTGCAGATCATTTGCAATATTTCTATGTTTATGCAAAGTCTTTTATATCGTGTTTTTGAT
ATAATTGCAAGGTCTTAAAGTTGTATATTTCTATTTGGTACGAATGAGCA
>TRINITY_DN47373_c0_g1_i7 from sample A7 / Example unspliced isoform:CGATGATGGTAGAAGAGAAGGGAAAAGGGACATACTTCATCTTCGCGGCTTCGAATGACGATTCAGgtatgtaaattccgctgtaattttatttgagctgcaaagtggcgaatttgttagagggagtggcactatcccagcataacgagtgagaggcgagggtttggttcagGGCGATTTCAGTTCAAGAAATTTCTAGA
AGTTCTGCTACTGCCGTTAAATTCTTCGCCATGGTGATTCTCAGAGTGCTCTTAGGGGCAAATTTCAGTTGAATTGATGAGATTTTCGAGTTGGTTACCGGGCAAGCAAACTCGAGATAACGGAGCTCTGAACAAGTCCACCGGACAAATTTGGGTTCGAATTTGTTTATAAACTGTTTTGTAAACTCGTAAGAGGCCTT
TGACAGCAAGACGTGACAAAGTGGTAGGGAGTGCGGCGATTAAGGCGGGGCAGAGTGTGGAACATTTGAGGCGATCTAGCAGTGAGCTGTGTTCAGCAGGTCAGAACAAGTTGGTGTCTTGGAGTTTATCAGCGTCAGGGTAGCAGGTTTCGAGGGAAAGGTATGCCCACAAGTGCTGGTGTTCGAGAGGCTCTGGACAG
ACGACGAAACTGGTAGAGAACCGTTCCCTTTGAAAAATTCCTTTGGCGTAATAACATGGATAGCCATGGCTCCTGAACACAAAGAAATCGGAAGAAGCAGAGCGCCACTCGTAGATTGTACAAATACTCCGCCCATATCCATATCCAGACCTCGAAGAGCCCGCGGTGCCTATGCCTCCCCCTCCATTAACACTCAATTC
ACCCTCAAACGCCCGGCCGACCCCGATAACCGGGCGAACAATGTCGAGGATGCAGCTACTCCGACAGGCCACCTGAGAGAGAACAGCAGTTCCGATCACAACTTTAGCACTCCGCAGGCGGTTTCGCCGGCCGTGGTCACTTCTCAGCTCACGGAGGAAAACGAGGACGAGGGTTTAAGTGATTTTAGGGTTTACAACAA
ACGCTGCCAGACAAAGGGCAGGGCTTTGGAGACGTTGTCGTTAAGCTGCCCACCTCTACGGAGGCCTCCCAGTGAAAGCCCTGCAGTGGAGAGGAGTCGTCAATACAGAAATCAGGGTGCTGATGTTCGGAAGAGGCGTCCAATCGATGCTTCAACTGATTTGCCCGAATCAGGAAGGCCAAAGGTGCAGAGACGACGAA
ACTCGATGCCAAAAGATGGGGGAGGATGCACATTGCCTGAAAGTTTTGTCCATGAACAGCAAGCTCACTATGCAGAGGTTGATGCATTTGTCCTCCAGGAAGAGGAACTGTCAGATGACAGTTCTGTATAGTACCAACTGAAATATTTGTAACTTGTCTATCTAGTTGATTGTTTTTGGCAATGGTAAATTGTTTTGAAG
GTTTTTATTGCTGCAGAGATTCTTGCAGATGTATTTACAGGCCTCATTGATTTTTTGGCATTGGTAGCAGTGGATTAGCAATTCCACTCATTGCCAAAGCAACATGATCTAGTCCAGTATTCTGTCAACGTGCCCTTTTTGTCTCTTGTCTGTATCAGTAAAGGGAGTTGGGGCAAATGCAAATATAAGCTATAATTTGA
TTTTTGACTGTAACTACTTATAGTTGGTTTGACGGTCATGTACCATCTGCAGATCATTTGCAATATTTCTATGTTTATGCAAAGTCTTTTATATCGTGTTTTTGATATAATTGCAAGGTCTTAAAGTTGTATATTTCTATTTGGTACGAATGAGCA
Intron 2 GTATGTAAAT ... CCAGTGAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 84.21 | 3 | 6 | 16 |
| A2 | 93.75 | 1 | 6 | 15 |
| A3 | 88.89 | 3 | 7 | 24 |
| A4 | 83.33 | 1 | 3 | 5 |
| A5 | 100 | 0 | 0 | 15 |
| A6 | 81.82 | 20 | 18 | 90 |
| A7 | 95.65 | 2 | 4 | 44 |
| A8 | 90.07 | 7.5 | 2 | 68 |
| A9 | 82.76 | 10 | 10 | 48 |
| A10 | 87.41 | 7.5 | 18 | 52 |
>TRINITY_DN44237_c0_g3_i1 from sample A6 / Example spliced isoformTTTATTACAATTTTAAAATACATTGACGTATATTTTGCCGCCATTAACGATGATGGTAGAAGAGAAGGGAAAAGGGACATACTTCATCTTCGCGGCTTCGAATGACGATTCAGCCCTGCAGTGGAGAGGAGTCGTCAATACAGAAATCAGGGTGCTGATGTTCGGAAGAGGCGTCCAATCGATGCTTCAACTGATTTGCC
CGAATCAGGAAGGCCGAAGGTGCAGAGACGACGAAACTCGATGCCAAAAGATGGGGGAGGATGCACATTGCCTGAAAGTTTTGTCCATGAACAGCAAGCTCACTATGCAGAGGTTGATGCATTTGTCCTCCAGGAAGAGGAACTGTCAGATGACAGTTCTGTATAGTACCAACTGAAATATTTGTAACTTGTCTATCTAG
TTGATTGTTTTTGGCAATGGTAAATTGTTTTGAAGGTTTTTATTGCTGCAGAGATTCTTGCAGATGTATTTACAGGCCTCATTGATTTTTTGGCATTGGTAGCAGTGGATTAGCAATTCCACTCATTGCCAAAGCAACATGATCTAGTCCAGTATTCTGTCAACGTGCCCTTTTTGTCTCTTGTCTGTATCAGTAAAGGG
AGTTGGGGCAAATGCAAATATAAGCTATAATTTGATTTTTGACTGTAACTACTTATAGTTGGTTTGACGGTCATGTACCATCTGCAGATCATTTGCAATATTTCTATGTTTATGCAAAGTCTTTTATATCGTGTTTTTGATATAATTGCAAGGTCTTAAAGTTGTATATTTCTATTTGGTACGAATGAGCTATGATATCG
TTTATTGGTTTGGAA
>TRINITY_DN44237_c0_g3_i2 from sample A6 / Example unspliced isoform:TTTATTACAATTTTAAAATACATTGACGTATATTTTGCCGCCATTAACGATGATGGTAGAAGAGAAGGGAAAAGGGACATACTTCATCTTCGCGGCTTCGAATGACGATTCAGgtatgtaaattccgctgtaattttatttgagctgcaaagtggcgaatttgttagagggagtggcactatcccagcataacgagtgag
aggcgagggtttggttcagggcgatttcagttcaagaaatttctagaagttctgctactgccgttaaattcttcgccatggtgattctcagagtgctcttaggggcaaatttcagttgaattgatgagattttcgagttggttaccgggcaagcaaactcgagataacggagctctgaacaagtccaccggacaaatttg
ggttcgaatttgtttataaactgttttgtaaactcgtaagaggcctttgacagcaagacgtgacaaagtggtagggagtgcggcgattaaggcggggcagagtgtggaacatttgaggcgatctagcagtgagctgtgttcagcaggtcagaacaagttggtgtcttggagtttatcagcgtcagggtagcaggtttcga
gggaaaggtatgcccacaagtgctggtgttcgagaggctctggacagacgacgaaactggtagagaaccgttccctttgaaaaattcctttggcgtaataacatggatagccatggctcctgaacacaaagaaatcggaagaagcagagcgccactcgtagattgtacaaatactccgcccatatccatatccagacctc
gaagagcccgcggtgcctatgcctccccctccattaacactcaattcaccctcaaacgcccggccgaccccgataaccgggcgaacaatgtcgaggatgcagctactccgacaggccacctgagagagaacagcagttccgatcacaactttagcactccgcaggcggtttcgccggccgtggtcacttctcagctcacg
gaggaaaacgaggacgagggtttaagtgattttagggtttacaacaaacgctgccagacaaagggcagggctttggagacgttgtcgttaagctgcccacctctacggaggcctcccagtgaaagCCCTGCAGTGGAGAGGAGTCGTCAATACAGAAATCAGGGTGCTGATGTTCGGAAGAGGCGTCCAATCGATGCTTC
AACTGATTTGCCCGAATCAGGAAGGCCAAAGAAGGTGCAGAGACGACGAAACTCGATGCCAAAAGATGGGGGAGGATGCACATTGCCTGAAAGTTTTGTCCATGAACAGCAAGCTCACTATGCAGAGGTTGATGCATTTGTCCTCCAGGAAGAGGAACTGTCAGATGACAGTTCTGTATAGTACCAACTGAAATATTTGT
AACTTGTCTATCTAGTTGATTGTTTTTGGCAATGGTAAATTGTTTTGAAGGTTTTTATTGCTGCAGAGATTCTTGCAGATGTATTTACAGGCCTCATTGATTTTTTGGCATTGGTAGCAGTGGATTAGCAATTCCACTCATTGCCAAAGCAACATGATCTAGTCCAGTATTCTGTCAACGTGCCCTTTTTGTCTCTTGTC
TGTATCAGTAAAGGGAGTTGGGGCAAATGCAAATATAAGCTATAATTTGATTTTTGACTGTAACTACTTATAGTTGGTTTGACGGTCATGTACCATCTGCAGATCATTTGCAATATTTCTATGTTTATGCAAAGTCTTTTATATCGTGTTTTTGATATAATTGCAAGGTCTTAAAGTTGTATATTTCTATTTGGTACGAA
TGAGCTATGATATCGTTTATTGGTTTGGAA