NA ----> NA
Intron 1 GTGCATTTTG ... TTATGAAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.25 | 33 | 19 | 11 |
| A2 | 27.27 | 60 | 23 | 22 |
| A3 | 24.8 | 47 | 13 | 18 |
| A4 | 23.48 | 44 | 17 | 10 |
| A5 | 12.9 | 27 | 4 | 4 |
| A6 | 7.69 | 6 | 0 | 1 |
| A7 | 20.75 | 21 | 1 | 10 |
| A8 | 33.33 | 2 | 1 | 1 |
| A9 | 27.27 | 8 | 3 | 3 |
| A10 | 31.03 | 10 | 5 | 4 |
>TRINITY_DN128102_c1_g1_i6 from sample A1 / Example spliced isoformGAGAAACCCTAACTTTATTGCTAACCCCAAAGAATATTTCTTTAAAAGGTAAAGACAAGCTTCTTGGAGCATCATGCTCCAACATTGACCCTCTTAAACCCTCACCACTGTCGGCAGTAGCGTCTATACGCCCAAGCCAAAAATCCAGCCCCGGAACGTGGTCCGGAACCAGGTTCGGCATTAGAGGGCGAATGAATAAA
ACCCCAAAGAGCAGAGGTGAAAATAAGAAACATCAGAAGAATATGAATGGACGACCGCGACGAGGGTTTGAAGGATACCGAAGGAAATCTTGACGGCAGGTGGAAATGAACTGCTCTCTGGCTTAAACAGGCAGCAATCTGTACTGGGTTGCCTTTAGATTTCGAAGAGAATTCGACCCATATTCAAAGAAATCCGATAA
ACCATATATATGGAAGTTTCAGGTTCTACAGGTCCTGTTAATGGTGGGCAGCGGAGCGGGGTTTGATCAGAGGAACAGTGGTAATAAATGCCGTGAGGAGATGGTTTCCATGGCGGTGTTGGGGACGGTTTCACTTAAGAAATGGACCGAAGTCAGCGGGAAAAACCCAAGCTTTTCAGTTGAATGCAGGCTGGGCTCGC
AGGTCACACGTTCGCAGAAGTTCCGGTGCGGCGACAGGGGATTCGAGGACCCAGATGCGAGGTTAATGGCTCTGCGTTTTGGGTTTTTGACGGAAGGGCTGGTGGCCTTCAGGAGCTTTCTGTTCGAGGGTTCGAAGAAGCGAGGGCTTGTGTATATTTGTGTGAGGAGGAATCGTGCATGCGGTCTGCGGTTTGCTGAT
GTTGTTATCAGGGTGGATAGTGGGGTTACGAGGTCGATTTCGTTCAAGGGCTCGGGATCCAGCGATGGGGATGACGATGCTGTTGAGAGGGCTTTCTCGTTTGTTACAGGGTCAGGGATTGGGAATTGGGTGCGATGGTTTATGGGACAGCAGGTCGAGGGTCCGAGTTTACAACAAGGAGGAGGGGTTTGTGGGCACTG
TGGGCAGCGGAAGCAGCAACACCAGCATCAAGAGGAGTCTGATGACCCCCAGTGCGAGCAACAGATATCTGAAGATTACATGTGTTTTTCCTGTAAAAAGATAGAAAGGGATGAGATTACTATTATCAGGATGGATGAGCAGGGAGAATTCAAGGCGGTTCCTGTTGAAGAGATCTGCACAGATAATAAAAGTGCAGGGT
TATCAGTGAGTGAGTCTGTTTGCAGTGTCTGTGGATGTGAGGACAACGAAAATTTTGAGATAATGATGCATCCTTGCAGCTGCAACGGAGGTTCAGTTCTTGCCCATCCCTCCTGTGTTTCTGCATCCCTAGCAACTTCCAGGACAGGGAGCAATCAGGCACCAGCTTCATGTAAGGTCTGCGGTGGTAGAGGCACCATA
GGCTCACCAGAAGAAGGGACTTCAAAGCTACTCATGCTAAATCCAAACTTCAGAAGAAACACTACTAATGCCACTCAAAAGAAGGGAGTAAAACGAGTTTCTAGTGACCTAACCAATGGGGGATTGGGTAAAGCCGATCTCTCTGAGATCCAGCCTCTGAAAACATTTAATGAAGAGAGTGGCAGGAAAGCTGTACAGGA
TCCACAAAAGGATGATTTTTCCTTTTCTGAGTATGAAAAGCTTGGAGTTACTATTCCCACTCGGCGTTTTGATGATGCTGTTGCAAGTGTTCCCATAAAAAAACGGAAATACACACTGTTCCAGCTCCCTTCTCCTCCACCTGCATCCCCAACACCAGCTTCTCCATTGCGATCATCTTCTCCAGAGCTTGCTGCCTCTT
TAGTTCGTTCTGAAGGATTACCATCTGCAAAGCAAGAGCAGGGGGAACAGCAAGTGCTAGAAGGTATGGATGTTACAGGAGAATCTCTCCAGGAGAAATACACAGACGTTGTTGGTCAGTCCTTGAATGAAAATACCTTGAAAATTCCTAGTTCAGTAGGTTATTTTGCACAGGATATTGGCATTGCTAATTTGTCAGGA
AATTCAAGGTTCCCAATGTCTGCTTCTATAGGTAAGCCAGGGAGCAACAGCTTGGATGACAGAGTATCCAAAGTGGAATTAGTGGAATTCAAGAATCCTAAGCCTACACCTGAAAGATTGAATGATGGTGATATTGGTAGTCAAGATAATAAACAAGAAGTTTATGCATGTGTGGACACTCTGAAACAGGAAGAAGATTT
TAGGAGACGAGATCATGTGCTAGAGAGTGATCTGCTAGCCACTGCAGAGAATAAAATCCATGTAATCGAGGGAATTTCAGATTGTAATAATCTGAGCAGAACAGATCACATTACATGCATGGAGACAGAGGAATCAATGGAGTTAGCCCTATGCAGTAACTCTATTGCTCTAGGATCTAGAAATCATTTAGAGACAACTG
GCTGTAGTAAAATGTCTTCTGTAGCTGGGGAGAGTTCTGCTGCAGGTTTACAGGAAGATGGAGAGAAACAAGAGAAAGGAATGCTTTTGAGGTTGGATTCTGGCTATTTCAATGATGATAGGTCGCATTGGGACTTGAATACCCCTATGGATTCTTGGGAAAAGCAACTAGAAGTTGTAAATACAAATTCTAAACCTGAA
TTTTTACCTGCAGACACTGCAAACAATAAGAACTCAGAACATTTGGATGGGATTCAGGTACACATATTGGCTTCAGAAGCTAAGCATGATAGTGGAAAGTCTGAACAGGATATGCTGAGCAAGGTTTTACAGGCAGACCAAGATAATACTGCACTGAATTTCTCAGAAAGCTTAGCTTTTGGACATGATTCAGAACTTGA
TACTTCTCTCAGACTTCAGCCCGATGCCATTCTCAATCAGTGTAAGATAAACCTTGCATATATCTGTAAGAGTGGTTCACTATCAGAGGAATCGGTAGCTGAAAGGGAACTAAACCTCTCCATAGCACCTTCAGGAGGAGCTTGTGAATCAGTTATTAATGTTTCTTGTGTTGATGCCCAAGATGATAGACATTTCATAG
AGAAACCTTCAGATTGTCTTTTGGCAACAGACCGTTCCTTGCAAAGTGACAGTCAATTAGATAATACTCCGATTGATGACAATGTTGATATGTTTGATAAAACCGAGTCTTCTGCTGATTGTAAGCAAGATAAGGAACCTGCAGAAGATAATTTTGAAGCAACTGATGGCACTAGTTACAAGTGCAACTCAAGTGGTCCT
GAAACAACTTATGAAAATCCTGGTCTTATGCAAAAAAATTCCCCATCTTCTCCAGCCAGGAATCAACATCTTATCAAAACTGTCAATGATGACAGCATTGTTGATGATGCAAATGCTGCAACTATCTGTGCCGTTAATGCTTGTGTGGAGGATATTACCACCATGAAGGAAAATCCTAGAAGCCCCGAGCTTGGATTGGA
CAAGCAATCTGTGGAGGATGCCACAGAAATTGCCTATGGTGGTGACTCTGAGTTTGATGGTTACGATGATGAATCTGAACTTGTTTCGGATACTGAGAATATTTCGGATACTGAAAAAGAGATTGTTGAACAGGCTGAAAATGAGCATCAAGTTGAAGAAGGAGAATACAGAGAAACAGGGCTTCATACAGGGGAAGAAC
TGGAAGATGAACATGTTGATTATGGGGATTCTGATGGTAGAGATGCTGATGATCTCGGCATGGATCTAGATGACAGAGGAAAAGATGTGGAACATGAAAAAAACTGGGATGATGACCAGCAGTCTGAAATGGAAGAAAAATATGATACTGATAGTAATCATGAGGAACAGGACTCACAATTTGATGGAGTTGTTCAAGTC
AGTCAAGCTGGGGAAGAAGACACTAAATGTGAATCAGTGGAAGCTGAGCTAGATATTCAACACGCTACTGAGAAACAGGAACACAAAGGTGATGGCAGTCTATCTCAAACCAATGAAGTATTAGGTGAAGACATAAGTTTGGAGGTTGAACTGAAATGCCACCAAGATCAAAATAAGGGTGTTGTTGCAAAGTCAAGGGA
CGGGAGGTTCTTTACACGGCAGAAATCATCTGGATGGGATCAATTGCCTGATGGATTTGAAAGTGCAGCAGAAGCACTGAAGGCCGTCCATGGTACATTCATTAAGCGGGGGCGAGGTGCTGCTTTGATCTCTGGGGGACGCATAGGGCCTATGTCTTCCAGGGGTGCATCATCACGAAGGGATGGTGTATTTGGGGAAA
GAATGGATGTTGATGATTCTATGCACAGAAAAGAGGGTTTTTTTATCCGGGGAAGGGATGGAAGCCTTCCTACAAGTCCAAGTTTTGCTTCAAGGAAACCAACCAGGGGCAGAATTGTCGGAAGGGGCGGTGGACCTTCTCGTGGAATGCATAATATGGGAAGGGCTGATCCCTGGGCAGATGGTGGAACTCGGCATTTG
GGTCCACATAGGCATCATTCTCCTGATTATTATGGTGATCATGTTGGGTTTGGACCACATGTTTCTGCAAATGCCGCTGCTATGTCTGCTGCCAAGGTTGAAAGTAGTGGCTTTGTTGTTTCCATGGATGGTACCGTAACAAAAGTTTTGAGGGGAGGAATCCGAGGTCGAAGAGGTCGTGGTACATTGATGGGGAGGGG
AGTCCCCATGGGCATTGAGGAGAGCAGTGACTTTGGATTGCAGATGAGCATGGGACCTGGTGGCCTGATGTCAGATACAGGGATGAATGCGAGCAGGGCTAGAGCCATTGGTATAGGTCCTGACAGAATAAGTGCTGGTAATCATGTAGGGCGAGAAAGATATCGAGAGCCATCATTTGGAAATAATAGGTGGGATCATT
CAATAGGGGATTCTCCTCACAGGATGGACCACCAATTGAGAGAAAGAAATAGGAGTTTTACACCCCCTCCAGGTAGGAGATTGACTCGTATGTTGCGTTCACACACCCAGTCTCGTTCAAGATCAGGAACTCGCTCTCCACGGCCGAAGTCCTCTCCTAGGGGAAGCACTGGTGCTGGAATAGGCCGTGGACCAGCACCA
AGAAGGCGTAGCAGGACTCCTCCTACCCTAAGGTCAGAATCTAGAATGGACAGGCCAAAGTCCCCTTTATTTCAGAATGTTGGTTCCTTTGAACACAGGATGTTTCTATCCTCTTCTAGAACTCGGCGATCGCCTCCACAATCATCAAAATGGTCATATGACAGAAGGGATACAAACCATTTCAAGGACTCTGAATACAG
GAGATCTTTCCGTGCTGGGAGTCCATCAAAGAGAATGTCACCCCGAGGTGTTCATGAATCTGGGTTGATGGGCTCACCTGGTAGGTTAAAGCATAGTGAGTACCGGGGCACAGTATATACTTCTAGAACAGCTGAATTTGGCAGTGACAGTAGACGCTTCAAGCGTGATGAAAGTGAAGATGTTAGACTGAAGCAGAGTG
ATAATTCTGGGAGATCAATTGAGGTCGGTAGCACAGATATTAGACGATATAGACGTCAGGATGATGAAGGTGACTGTCAAGCTCGTAACTCTCGTGCTAAGGATGCTGGGATCTCAAGGGAGCAGGGCAGGGGGGACCATAATAGCAGGTTATAGACACATACGGGCTGTGAAAAAGTATTGTCTTTGGAGAGGAAGACT
GGAAGTGGCAGTTTCGTGTATTTGGAATTGCTTGAAGGTTGTGATGACATCAAATCAAGTGGAAGAGGCATTCCTGACAATTGTGTTAATCATTGCTTACCTTCACACTGTTGTATTTAGGTCTTTTTTAATGCGAGCCTGTTGCAGTCATCAGAAAACTTCCCTTTGGATTTTTGTGCAGGGAACATATCTGAAGTAGG
AAGTTCTCTTATTGGGTTGTAAAACCCAGAGTATGTAAAGTCTATGGTAGTTCAGTTCAAACATTACTTGTCATAGAAGAGATAAAATCCCAAGCACTTGCTATCACTAGTATCTGCTGTACCATGTCAATTTCCTGGGACTCTTAGGTGAATTCCCTTTTTATAAGCTGGCATTCACTATGTAGTACCAAGTCATGTTC
TATGCTTTTAAGCTGACCCTCGTAAAAATTCTTAGTTACCGGTAAAGATCCATTTTCTTGGTCTGAAATGTCACAGATCAGGTTCTGATTGTGCTGCTTGAATATTTCACACTACTGGGCAAAAAATGTCATGCGTCTTCCTACAGATCTTCTATAAATGAGCTGCAACAAGTAGCTCCAGTCAATTTTGTTTTCCTCTA
CCACACTTTCTCTTACGTGCACTCCCATATCTCGAGATTAAGTGGTTGTATTCATTATTAATTGTTAGAAATGTTTCTTGCTATCTATATAGGATCCTCGTTTTTTTTTCAAATAATTGGCTTCAAAATCTTTGTATATCGTGACATGGAAGGTCGGGCAATCTTCATGGACTGTGCCTGATTCTAAAG
>TRINITY_DN128102_c1_g1_i3 from sample A1 / Example unspliced isoform:GAGAATTCAAGGCGGTTCCTGTTGAAGAGATCTGCACAGATAATAAAAGTGCAGGGTTATCAGTGAGTGAGTCTGTTTGCAGTGTCTGTGGATGTGAGGACAACGAAAATTTTGAGATAATGATGCATCCTTGCAGCTGCAACGGAGGTTCAGTTCTTGCCCATCCCTCCTGTGTTTCTGCATCCCTAGCAACTTCCAGG
ACAGGGAGCAATCAGGCACCAGCTTCATGTAAGGTCTGCGGTGGTAGAGGCACCATAGGCTCACCAGAAGAAGGGACTTCAAAGCTACTCATGCTAAATCCAAACTTCAGAAGAAACACTACTAATGCCACTCAAAAGAAGGGAGTAAAACGAGTTTCTAGTGACCTAACCAATGGGGGATTGGGTAAAGCCGATCTCTC
TGAGATCCAGCCTCTGAAAACATTTAATGAAGAGAGTGGCAGGAAAGCTGTACAGGATCCACAAAAGGATGATTTTTCCTTTTCTGAGTATGAAAAGgtgcattttgctttgttctttagatataactgtgttcatagcagaacaaactttattttttaacaatttactgatagtttttaattttattttttatgaaaag
CTTGGAGTTACTATTCCCACTCGGCGTTTTGATGATGCTGTTGCAAGTGTTCCCATAAAAAAACGGAAATACACACTGTTCCAGCTCCCTTCTCCTCCACCTGCATCCCCAACACCAGCTTCTCCATTGCGATCATCTTCTCCAGAGCTTGCTGCCTCTTTAGTTCGTTCTGAAGGATTACCATCTGCAAAGCAAGAGCA
GGGGGAACAGCAAGTGCTAGAAGGTA
Intron 2 GTTAGTTACA ... CATTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.77 | 36 | 6.7 | 16 |
| A2 | 22.5 | 31 | 18.4 | 9 |
| A3 | 30.77 | 45 | 8 | 20 |
| A4 | 27.5 | 29 | 2.6 | 11 |
| A5 | 18.75 | 13 | 4.1 | 3 |
| A6 | 33.33 | 8 | 1.7 | 4 |
| A7 | 50 | 4 | 0 | 4 |
| A8 | 50 | 4 | 0 | 4 |
| A9 | 23.08 | 10 | 1.3 | 3 |
| A10 | 20 | 12 | 1.7 | 3 |
>TRINITY_DN128102_c1_g1_i6 from sample A1 / Example spliced isoformGAGAAACCCTAACTTTATTGCTAACCCCAAAGAATATTTCTTTAAAAGGTAAAGACAAGCTTCTTGGAGCATCATGCTCCAACATTGACCCTCTTAAACCCTCACCACTGTCGGCAGTAGCGTCTATACGCCCAAGCCAAAAATCCAGCCCCGGAACGTGGTCCGGAACCAGGTTCGGCATTAGAGGGCGAATGAATAAA
ACCCCAAAGAGCAGAGGTGAAAATAAGAAACATCAGAAGAATATGAATGGACGACCGCGACGAGGGTTTGAAGGATACCGAAGGAAATCTTGACGGCAGGTGGAAATGAACTGCTCTCTGGCTTAAACAGGCAGCAATCTGTACTGGGTTGCCTTTAGATTTCGAAGAGAATTCGACCCATATTCAAAGAAATCCGATAA
ACCATATATATGGAAGTTTCAGGTTCTACAGGTCCTGTTAATGGTGGGCAGCGGAGCGGGGTTTGATCAGAGGAACAGTGGTAATAAATGCCGTGAGGAGATGGTTTCCATGGCGGTGTTGGGGACGGTTTCACTTAAGAAATGGACCGAAGTCAGCGGGAAAAACCCAAGCTTTTCAGTTGAATGCAGGCTGGGCTCGC
AGGTCACACGTTCGCAGAAGTTCCGGTGCGGCGACAGGGGATTCGAGGACCCAGATGCGAGGTTAATGGCTCTGCGTTTTGGGTTTTTGACGGAAGGGCTGGTGGCCTTCAGGAGCTTTCTGTTCGAGGGTTCGAAGAAGCGAGGGCTTGTGTATATTTGTGTGAGGAGGAATCGTGCATGCGGTCTGCGGTTTGCTGAT
GTTGTTATCAGGGTGGATAGTGGGGTTACGAGGTCGATTTCGTTCAAGGGCTCGGGATCCAGCGATGGGGATGACGATGCTGTTGAGAGGGCTTTCTCGTTTGTTACAGGGTCAGGGATTGGGAATTGGGTGCGATGGTTTATGGGACAGCAGGTCGAGGGTCCGAGTTTACAACAAGGAGGAGGGGTTTGTGGGCACTG
TGGGCAGCGGAAGCAGCAACACCAGCATCAAGAGGAGTCTGATGACCCCCAGTGCGAGCAACAGATATCTGAAGATTACATGTGTTTTTCCTGTAAAAAGATAGAAAGGGATGAGATTACTATTATCAGGATGGATGAGCAGGGAGAATTCAAGGCGGTTCCTGTTGAAGAGATCTGCACAGATAATAAAAGTGCAGGGT
TATCAGTGAGTGAGTCTGTTTGCAGTGTCTGTGGATGTGAGGACAACGAAAATTTTGAGATAATGATGCATCCTTGCAGCTGCAACGGAGGTTCAGTTCTTGCCCATCCCTCCTGTGTTTCTGCATCCCTAGCAACTTCCAGGACAGGGAGCAATCAGGCACCAGCTTCATGTAAGGTCTGCGGTGGTAGAGGCACCATA
GGCTCACCAGAAGAAGGGACTTCAAAGCTACTCATGCTAAATCCAAACTTCAGAAGAAACACTACTAATGCCACTCAAAAGAAGGGAGTAAAACGAGTTTCTAGTGACCTAACCAATGGGGGATTGGGTAAAGCCGATCTCTCTGAGATCCAGCCTCTGAAAACATTTAATGAAGAGAGTGGCAGGAAAGCTGTACAGGA
TCCACAAAAGGATGATTTTTCCTTTTCTGAGTATGAAAAGCTTGGAGTTACTATTCCCACTCGGCGTTTTGATGATGCTGTTGCAAGTGTTCCCATAAAAAAACGGAAATACACACTGTTCCAGCTCCCTTCTCCTCCACCTGCATCCCCAACACCAGCTTCTCCATTGCGATCATCTTCTCCAGAGCTTGCTGCCTCTT
TAGTTCGTTCTGAAGGATTACCATCTGCAAAGCAAGAGCAGGGGGAACAGCAAGTGCTAGAAGGTATGGATGTTACAGGAGAATCTCTCCAGGAGAAATACACAGACGTTGTTGGTCAGTCCTTGAATGAAAATACCTTGAAAATTCCTAGTTCAGTAGGTTATTTTGCACAGGATATTGGCATTGCTAATTTGTCAGGA
AATTCAAGGTTCCCAATGTCTGCTTCTATAGGTAAGCCAGGGAGCAACAGCTTGGATGACAGAGTATCCAAAGTGGAATTAGTGGAATTCAAGAATCCTAAGCCTACACCTGAAAGATTGAATGATGGTGATATTGGTAGTCAAGATAATAAACAAGAAGTTTATGCATGTGTGGACACTCTGAAACAGGAAGAAGATTT
TAGGAGACGAGATCATGTGCTAGAGAGTGATCTGCTAGCCACTGCAGAGAATAAAATCCATGTAATCGAGGGAATTTCAGATTGTAATAATCTGAGCAGAACAGATCACATTACATGCATGGAGACAGAGGAATCAATGGAGTTAGCCCTATGCAGTAACTCTATTGCTCTAGGATCTAGAAATCATTTAGAGACAACTG
GCTGTAGTAAAATGTCTTCTGTAGCTGGGGAGAGTTCTGCTGCAGGTTTACAGGAAGATGGAGAGAAACAAGAGAAAGGAATGCTTTTGAGGTTGGATTCTGGCTATTTCAATGATGATAGGTCGCATTGGGACTTGAATACCCCTATGGATTCTTGGGAAAAGCAACTAGAAGTTGTAAATACAAATTCTAAACCTGAA
TTTTTACCTGCAGACACTGCAAACAATAAGAACTCAGAACATTTGGATGGGATTCAGGTACACATATTGGCTTCAGAAGCTAAGCATGATAGTGGAAAGTCTGAACAGGATATGCTGAGCAAGGTTTTACAGGCAGACCAAGATAATACTGCACTGAATTTCTCAGAAAGCTTAGCTTTTGGACATGATTCAGAACTTGA
TACTTCTCTCAGACTTCAGCCCGATGCCATTCTCAATCAGTGTAAGATAAACCTTGCATATATCTGTAAGAGTGGTTCACTATCAGAGGAATCGGTAGCTGAAAGGGAACTAAACCTCTCCATAGCACCTTCAGGAGGAGCTTGTGAATCAGTTATTAATGTTTCTTGTGTTGATGCCCAAGATGATAGACATTTCATAG
AGAAACCTTCAGATTGTCTTTTGGCAACAGACCGTTCCTTGCAAAGTGACAGTCAATTAGATAATACTCCGATTGATGACAATGTTGATATGTTTGATAAAACCGAGTCTTCTGCTGATTGTAAGCAAGATAAGGAACCTGCAGAAGATAATTTTGAAGCAACTGATGGCACTAGTTACAAGTGCAACTCAAGTGGTCCT
GAAACAACTTATGAAAATCCTGGTCTTATGCAAAAAAATTCCCCATCTTCTCCAGCCAGGAATCAACATCTTATCAAAACTGTCAATGATGACAGCATTGTTGATGATGCAAATGCTGCAACTATCTGTGCCGTTAATGCTTGTGTGGAGGATATTACCACCATGAAGGAAAATCCTAGAAGCCCCGAGCTTGGATTGGA
CAAGCAATCTGTGGAGGATGCCACAGAAATTGCCTATGGTGGTGACTCTGAGTTTGATGGTTACGATGATGAATCTGAACTTGTTTCGGATACTGAGAATATTTCGGATACTGAAAAAGAGATTGTTGAACAGGCTGAAAATGAGCATCAAGTTGAAGAAGGAGAATACAGAGAAACAGGGCTTCATACAGGGGAAGAAC
TGGAAGATGAACATGTTGATTATGGGGATTCTGATGGTAGAGATGCTGATGATCTCGGCATGGATCTAGATGACAGAGGAAAAGATGTGGAACATGAAAAAAACTGGGATGATGACCAGCAGTCTGAAATGGAAGAAAAATATGATACTGATAGTAATCATGAGGAACAGGACTCACAATTTGATGGAGTTGTTCAAGTC
AGTCAAGCTGGGGAAGAAGACACTAAATGTGAATCAGTGGAAGCTGAGCTAGATATTCAACACGCTACTGAGAAACAGGAACACAAAGGTGATGGCAGTCTATCTCAAACCAATGAAGTATTAGGTGAAGACATAAGTTTGGAGGTTGAACTGAAATGCCACCAAGATCAAAATAAGGGTGTTGTTGCAAAGTCAAGGGA
CGGGAGGTTCTTTACACGGCAGAAATCATCTGGATGGGATCAATTGCCTGATGGATTTGAAAGTGCAGCAGAAGCACTGAAGGCCGTCCATGGTACATTCATTAAGCGGGGGCGAGGTGCTGCTTTGATCTCTGGGGGACGCATAGGGCCTATGTCTTCCAGGGGTGCATCATCACGAAGGGATGGTGTATTTGGGGAAA
GAATGGATGTTGATGATTCTATGCACAGAAAAGAGGGTTTTTTTATCCGGGGAAGGGATGGAAGCCTTCCTACAAGTCCAAGTTTTGCTTCAAGGAAACCAACCAGGGGCAGAATTGTCGGAAGGGGCGGTGGACCTTCTCGTGGAATGCATAATATGGGAAGGGCTGATCCCTGGGCAGATGGTGGAACTCGGCATTTG
GGTCCACATAGGCATCATTCTCCTGATTATTATGGTGATCATGTTGGGTTTGGACCACATGTTTCTGCAAATGCCGCTGCTATGTCTGCTGCCAAGGTTGAAAGTAGTGGCTTTGTTGTTTCCATGGATGGTACCGTAACAAAAGTTTTGAGGGGAGGAATCCGAGGTCGAAGAGGTCGTGGTACATTGATGGGGAGGGG
AGTCCCCATGGGCATTGAGGAGAGCAGTGACTTTGGATTGCAGATGAGCATGGGACCTGGTGGCCTGATGTCAGATACAGGGATGAATGCGAGCAGGGCTAGAGCCATTGGTATAGGTCCTGACAGAATAAGTGCTGGTAATCATGTAGGGCGAGAAAGATATCGAGAGCCATCATTTGGAAATAATAGGTGGGATCATT
CAATAGGGGATTCTCCTCACAGGATGGACCACCAATTGAGAGAAAGAAATAGGAGTTTTACACCCCCTCCAGGTAGGAGATTGACTCGTATGTTGCGTTCACACACCCAGTCTCGTTCAAGATCAGGAACTCGCTCTCCACGGCCGAAGTCCTCTCCTAGGGGAAGCACTGGTGCTGGAATAGGCCGTGGACCAGCACCA
AGAAGGCGTAGCAGGACTCCTCCTACCCTAAGGTCAGAATCTAGAATGGACAGGCCAAAGTCCCCTTTATTTCAGAATGTTGGTTCCTTTGAACACAGGATGTTTCTATCCTCTTCTAGAACTCGGCGATCGCCTCCACAATCATCAAAATGGTCATATGACAGAAGGGATACAAACCATTTCAAGGACTCTGAATACAG
GAGATCTTTCCGTGCTGGGAGTCCATCAAAGAGAATGTCACCCCGAGGTGTTCATGAATCTGGGTTGATGGGCTCACCTGGTAGGTTAAAGCATAGTGAGTACCGGGGCACAGTATATACTTCTAGAACAGCTGAATTTGGCAGTGACAGTAGACGCTTCAAGCGTGATGAAAGTGAAGATGTTAGACTGAAGCAGAGTG
ATAATTCTGGGAGATCAATTGAGGTCGGTAGCACAGATATTAGACGATATAGACGTCAGGATGATGAAGGTGACTGTCAAGCTCGTAACTCTCGTGCTAAGGATGCTGGGATCTCAAGGGAGCAGGGCAGGGGGGACCATAATAGCAGGTTATAGACACATACGGGCTGTGAAAAAGTATTGTCTTTGGAGAGGAAGACT
GGAAGTGGCAGTTTCGTGTATTTGGAATTGCTTGAAGGTTGTGATGACATCAAATCAAGTGGAAGAGGCATTCCTGACAATTGTGTTAATCATTGCTTACCTTCACACTGTTGTATTTAGGTCTTTTTTAATGCGAGCCTGTTGCAGTCATCAGAAAACTTCCCTTTGGATTTTTGTGCAGGGAACATATCTGAAGTAGG
AAGTTCTCTTATTGGGTTGTAAAACCCAGAGTATGTAAAGTCTATGGTAGTTCAGTTCAAACATTACTTGTCATAGAAGAGATAAAATCCCAAGCACTTGCTATCACTAGTATCTGCTGTACCATGTCAATTTCCTGGGACTCTTAGGTGAATTCCCTTTTTATAAGCTGGCATTCACTATGTAGTACCAAGTCATGTTC
TATGCTTTTAAGCTGACCCTCGTAAAAATTCTTAGTTACCGGTAAAGATCCATTTTCTTGGTCTGAAATGTCACAGATCAGGTTCTGATTGTGCTGCTTGAATATTTCACACTACTGGGCAAAAAATGTCATGCGTCTTCCTACAGATCTTCTATAAATGAGCTGCAACAAGTAGCTCCAGTCAATTTTGTTTTCCTCTA
CCACACTTTCTCTTACGTGCACTCCCATATCTCGAGATTAAGTGGTTGTATTCATTATTAATTGTTAGAAATGTTTCTTGCTATCTATATAGGATCCTCGTTTTTTTTTCAAATAATTGGCTTCAAAATCTTTGTATATCGTGACATGGAAGGTCGGGCAATCTTCATGGACTGTGCCTGATTCTAAAG
>TRINITY_DN128102_c1_g1_i1 from sample A1 / Example unspliced isoform:GAGAAACCCTAACTTTATTGCTAACCCCAAAGAATATTTCTTTAAAAGGTAAAGACAAGCTTCTTGGAGCATCATGCTCCAACATTGACCCTCTTAAACCCTCACCACTGTCGGCAGTAGCGTCTATACGCCCAAGCCAAAAATCCAGCCCCGGAACGTGGTCCGGAACCAGGTTCGGCATTAGAGGGCGAATGAATAAA
ACCCCAAAGAGCAGAGGTGAAAATAAGAAACATCAGAAGAATATGAATGGACGACCGCGACGAGGGTTTGAAGGATACCGAAGGAAATCTTGACGGCAGGTGGAAATGAACTGCTCTCTGGCTTAAACAGGCAGCAATCTGTACTGGGTTGCCTTTAGATTTCGAAGAGAATTCGACCCATATTCAAAGAAATCCGATAA
ACCATATATATGGAAGTTTCAGGTTCTACAGGTCCTGTTAATGGTGGGCAGCGGAGCGGGGTTTGATCAGAGGAACAGTGGTAATAAATGCCGTGAGGAGATGGTTTCCATGGCGGTGTTGGGGACGGTTTCACTTAAGAAATGGACCGAAGTCAGCGGGAAAAACCCAAGCTTTTCAGTTGAATGCAGGCTGGGCTCGC
AGGTCACACGTTCGCAGAAGTTCCGGTGCGGCGACAGGGGATTCGAGGACCCAGATGCGAGGTTAATGGCTCTGCGTTTTGGGTTTTTGACGGAAGGGCTGGTGGCCTTCAGGAGCTTTCTGTTCGAGGGTTCGAAGAAGCGAGGGCTTGTGTATATTTGTGTGAGGAGGAATCGTGCATGCGGTCTGCGGTTTGCTGAT
GTTGTTATCAGGGTGGATAGTGGGGTTACGAGGTCGATTTCGTTCAAGGGCTCGGGATCCAGCGATGGGGATGACGATGCTGTTGAGAGGGCTTTCTCGTTTGTTACAGGGTCAGGGATTGGGAATTGGGTGCGATGGTTTATGGGACAGCAGGTCGAGGGTCCGAGTTTACAACAAGGAGGAGGGGTTTGTGGGCACTG
TGGGCAGCGGAAGCAGCAACACCAGCATCAAGAGGAGTCTGATGACCCCCAGTGCGAGCAACAGATATCTGAAGATTACATGTGTTTTTCCTGTAAAAAGATAGAAAGGGATGAGATTACTATTATCAGGATGGATGAGCAGgttagttacaggcatccattccattcagcagggccttctgtgggtgtcagctaaatgg
cttttgttatactgagttccatagagatatttgattgattaaagtattacatctagtcgatggcctccatggccatggccattatcaatttaaggtcaaacttttgggaatcatggtgcaacactattaaaaacctaattaggttgtagtgtgcatttggaggttaaaaggatttatatgagggccttacattttgcagG
GAGAATTCAAGGCGGTTCCTGTTGAAGAGATCTGCACAGATAATAAAAGTGCAGGGTTATCAGTGAGTGAGTCTGTTTGCAGTGTCTGTGGATGTGAGGACAACGAAAATTTTGAGATAATGATGCATCCTTGCAGCTGCAACGGAGGTTCAGTTCTTGCCCATCCCTCCTGTGTTTCTGCATCCCTAGCAACTTCCAGG
ACAGGGAGCAATCAGGCACCAGCTTCATGTAAGGTCTGCGGTGGTAGAGGCACCATAGGCTCACCAGAAGAAGGGACTTCAAAGCTACTCATGCTAAATCCAAACTTCAGAAGAAACACTACTAATGCCACTCAAAAGAAGGGAGTAAAACGAGTTTCTAGTGACCTAACCAATGGGGGATTGGGTAAAGCCGATCTCTC
TGAGATCCAGCCTCTGAAAACATTTAATGAAGAGAGTGGCAGGAAAGCTGTACAGGATCCACAAAAGGATGATTTTTCCTTTTCTGAGTATGAAAAGCTTGGAGTTACTATTCCCACTCGGCGTTTTGATGATGCTGTTGCAAGTGTTCCCATAAAAAAACGGAAATACACACTGTTCCAGCTCCCTTCTCCTCCACCTG
CATCCCCAACACCAGCTTCTCCATTGCGATCATCTTCTCCAGAGCTTGCTGCCTCTTTAGTTCGTTCTGAAGGATTACCATCTGCAAAGCAAGAGCAGGGGGAACAGCAAGTGCTAGAAGGTATGGATGTTACAGGAGAATCTCTCCAGGAGAAATACACAGACGTTGTTGGTCAGTCCTTGAATGAAAATACCTTGAAA
ATTCCTAGTTCAGTAGGTTATTTTGCACAGGATATTGGCATTGCTAATTTGTCAGGAAATTCAAGGTTCCCAATGTCTGCTTCTATAGGTAAGCCAGGGAGCAACAGCTTGGATGACAGAGTATCCAAAGTGGAATTAGTGGAATTCAAGAATCCTAAGCCTACACCTGAAAGATTGAATGATGGTGATATTGGTAGTCA
AGATAATAAACAAGAAGTTTATGCATGTGTGGACACTCTGAAACAGGAAGAAGATTTTAGGAGACGAGATCATGTGCTAGAGAGTGATCTGCTAGCCACTGCAGAGAATAAAATCCATGTAATCGAGGGAATTTCAGATTGTAATAATCTGAGCAGAACAGATCACATTACATGCATGGAGACAGAGGAATCAATGGAGT
TAGCCCTATGCAGTAACTCTATTGCTCTAGGATCTAGAAATCATTTAGAGACAACTGGCTGTAGTAAAATGTCTTCTGTAGCTGGGGAGAGTTCTGCTGCAGGTTTACAGGAAGATGGAGAGAAACAAGAGAAAGGAATGCTTTTGAGGTTGGATTCTGGCTATTTCAATGATGATAGGTCGCATTGGGACTTGAATACC
CCTATGGATTCTTGGGAAAAGCAACTAGAAGTTGTAAATACAAATTCTAAACCTGAATTTTTACCTGCAGACACTGCAAACAATAAGAACTCAGAACATTTGGATGGGATTCAGGTACACATATTGGCTTCAGAAGCTAAGCATGATAGTGGAAAGTCTGAACAGGATATGCTGAGCAAGGTTTTACAGGCAGACCAAGA
TAATACTGCACTGAATTTCTCAGAAAGCTTAGCTTTTGGACATGATTCAGAACTTGATACTTCTCTCAGACTTCAGCCCGATGCCATTCTCAATCAGTGTAAGATAAACCTTGCATATATCTGTAAGAGTGGTTCACTATCAGAGGAATCGGTAGCTGAAAGGGAACTAAACCTCTCCATAGCACCTTCAGGAGGAGCTT
GTGAATCAGTTATTAATGTTTCTTGTGTTGATGCCCAAGATGATAGACATTTCATAGAGAAACCTTCAGATTGTCTTTTGGCAACAGACCGTTCCTTGCAAAGTGACAGTCAATTAGATAATACTCCGATTGATGACAATGTTGATATGTTTGATAAAACCGAGTCTTCTGCTGATTGTAAGCAAGATAAGGAACCTGCA
GAAGATAATTTTGAAGCAACTGATGGCACTAGTTACAAGTGCAACTCAAGTGGTCCTGAAACAACTTATGAAAATCCTGGTCTTATGCAAAAAAATTCCCCATCTTCTCCAGCCAGGAATCAACATCTTATCAAAACTGTCAATGATGACAGCATTGTTGATGATGCAAATGCTGCAACTATCTGTGCCGTTAATGCTTG
TGTGGAGGATATTACCACCATGAAGGAAAATCCTAGAAGCCCCGAGCTTGGATTGGACAAGCAATCTGTGGAGGATGCCACAGAAATTGCCTATGGTGGTGACTCTGAGTTTGATGGTTACGATGATGAATCTGAACTTGTTTCGGATACTGAGAATATTTCGGATACTGAAAAAGAGATTGTTGAACAGGCTGAAAATG
AGCATCAAGTTGAAGAAGGAGAATACAGAGAAACAGGGCTTCATACAGGGGAAGAACTGGAAGATGAACATGTTGATTATGGGGATTCTGATGGTAGAGATGCTGATGATCTCGGCATGGATCTAGATGACAGAGGAAAAGATGTGGAACATGAAAAAAACTGGGATGATGACCAGCAGTCTGAAATGGAAGAAAAATAT
GATACTGATAGTAATCATGAGGAACAGGACTCACAATTTGATGGAGTTGTTCAAGTCAGTCAAGCTGGGGAAGAAGACACTAAATGTGAATCAGTGGAAGCTGAGCTAGATATTCAACACGCTACTGAGAAACAGGAACACAAAGGTGATGGCAGTCTATCTCAAACCAATGAAGTATTAGGTGAAGACATAAGTTTGGA
GGTTGAACTGAAATGCCACCAAGATCAAAATAAGGGTGTTGTTGCAAAGTCAAGGGACGGGAGGTTCTTTACACGGCAGAAATCATCTGGATGGGATCAATTGCCTGATGGATTTGAAAGTGCAGCAGAAGCACTGAAGGCCGTCCATGGTACATTCATTAAGCGGGGGCGAGGTGCTGCTTTGATCTCTGGGGGACGCA
TAGGGCCTATGTCTTCCAGGGGTGCATCATCACGAAGGGATGGTGTATTTGGGGAAAGAATGGATGTTGATGATTCTATGCACAGAAAAGAGGGTTTTTTTATCCGGGGAAGGGATGGAAGCCTTCCTACAAGTCCAAGTTTTGCTTCAAGGAAACCAACCAGGGGCAGAATTGTCGGAAGGGGCGGTGGACCTTCTCGT
GGAATGCATAATATGGGAAGGGCTGATCCCTGGGCAGATGGTGGAACTCGGCATTTGGGTCCACATAGGCATCATTCTCCTGATTATTATGGTGATCATGTTGGGTTTGGACCACATGTTTCTGCAAATGCCGCTGCTATGTCTGCTGCCAAGGTTGAAAGTAGTGGCTTTGTTGTTTCCATGGATGGTACCGTAACAAA
AGTTTTGAGGGGAGGAATCCGAGGTCGAAGAGGTCGTGGTACATTGATGGGGAGGGGAGTCCCCATGGGCATTGAGGAGAGCAGTGACTTTGGATTGCAGATGAGCATGGGACCTGGTGGCCTGATGTCAGATACAGGGATGAATGCGAGCAGGGCTAGAGCCATTGGTATAGGTCCTGACAGAATAAGTGCTGGTAATC
ATGTAGGGCGAGAAAGATATCGAGAGCCATCATTTGGAAATAATAGGTGGGATCATTCAATAGGGGATTCTCCTCACAGGATGGACCACCAATTGAGAGAAAGAAATAGGAGTTTTACACCCCCTCCAGGTAGGAGATTGACTCGTATGTTGCGTTCACACACCCAGTCTCGTTCAAGATCAGGAACTCGCTCTCCACGG
CCGAAGTCCTCTCCTAGGGGAAGCACTGGTGCTGGAATAGGCCGTGGACCAGCACCAAGAAGGCGTAGCAGGACTCCTCCTACCCTAAGGTCAGAATCTAGAATGGACAGGCCAAAGTCCCCTTTATTTCAGAATGTTGGTTCCTTTGAACACAGGATGTTTCTATCCTCTTCTAGAACTCGGCGATCGCCTCCACAATC
ATCAAAATGGTCATATGACAGAAGGGATACAAACCATTTCAAGGACTCTGAATACAGGAGATCTTTCCGTGCTGGGAGTCCATCAAAGAGAATGTCACCCCGAGGTGTTCATGAATCTGGGTTGATGGGCTCACCTGGTAGGTTAAAGCATAGTGAGTACCGGGGCACAGTATATACTTCTAGAACAGCTGAATTTGGCA
GTGACAGTAGACGCTTCAAGCGTGATGAAAGTGAAGATGTTAGACTGAAGCAGAGTGATAATTCTGGGAGATCAATTGAGGTCGGTAGCACAGATATTAGACGATATAGACGTCAGGATGATGAAGGTGACTGTCAAGCTCGTAACTCTCGTGCTAAGGATGCTGGGATCTCAAGGGAGCAGGGCAGGGGGGACCATAAT
AGCAGGTTATAGACACATACGGGCTGTGAAAAAGTATTGTCTTTGGAGAGGAAGACTGGAAGTGGCAGTTTCGTGTATTTGGAATTGCTTGAAGGTTGTGATGACATCAAATCAAGTGGAAGAGGCATTCCTGACAATTGTGTTAATCATTGCTTACCTTCACACTGTTGTATTTAGGTCTTTTTTAATGCGAGCCTGTT
GCAGTCATCAGAAAACTTCCCTTTGGATTTTTGTGCAGGGAACATATCTGAAGTAGGAAGTTCTCTTATTGGGTTGTAAAACCCAGAGTATGTAAAGTCTATGGTAGTTCAGTTCAAACATTACTTGTCATAGAAGAGATAAAATCCCAAGCACTTGCTATCACTAGTATCTGCTGTACCATGTCAATTTCCTGGGACTC
TTAGGTGAATTCCCTTTTTATAAGCTGGCATTCACTATGTAGTACCAAGTCATGTTCTATGCTTTTAAGCTGACCCTCGTAAAAATTCTTAGTTACCGGTAAAGATCCATTTTCTTGGTCTGAAATGTCACAGATCAGGTTCTGATTGTGCTGCTTGAATATTTCACACTACTGGGCAAAAAATGTCATGCGTCTTCCTA
CAGATCTTCTATAAATGAGCTGCAACAAGTAGCTCCAGTCAATTTTGTTTTCCTCTACCACACTTTCTCTTACGTGCACTCCCATATCTCGAGATTAAGTGGTTGTATTCATTATTAATTGTTAGAAATGTTTCTTGCTATCTATATAGGATCCTCGTTTTTTTTTCAAATAATTGGCTTCAAAATCTTTGTATATCGTG
ACATGGAAGGTCGGGCAATCTTCATGGACTGTGCCTGATTCTAAAG
Intron 3 GTGGGTATTT ... GTCAAAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.94 | 58 | 5.6 | 11 |
| A2 | 22.64 | 41 | 2.4 | 12 |
| A3 | 39.66 | 35 | 9 | 23 |
| A4 | 29.23 | 46 | 4.8 | 19 |
| A5 | 11.11 | 48 | 8.8 | 6 |
| A6 | 27.27 | 24 | 2.4 | 9 |
| A7 | 22.73 | 68 | 5.6 | 20 |
| A8 | 30.3 | 23 | 1.8 | 10 |
| A9 | 19.4 | 54 | 5.6 | 13 |
| A10 | 7.58 | 61 | 4.8 | 5 |
>TRINITY_DN121618_c0_g1_i6 from sample A3 / Example spliced isoformGAGAATTCAAGGCGGTTCCTGTTGAAGAGATCTGCACAGATAATAAAAGTGCAGGGTTATCAGTGAGTGAGTCTGTTTGCAGTGTCTGTGGATGTGAGGACAACGAAAATTTTGAGATAATGATGCATCCTTGCAGCTGCAACGGAGGTTCAGTTCTTGCCCATCCCTCCTGTGTTTCTGCATCCCTAGCAACTTCCAGG
ACAGGGAGCAATCAGGCACCAGCTTCATGTAAGGTCTGCGGTGGTAGAGGCACCATAGGCTCACCAGAAGAAGGGACTTCAAAGCTACTCATGCTAAATCCAAACTTCAGAAGAAACACTACTAATGCCACTCAAAAGAAGGGAGTAAAACGAGTTTCTAGTGACCTAACCAATGGGGGAGTGGGTAAAGCCGATCTCTC
TGAGATCCAGCCTCTGAAAACATTTAATGAAGAGAGTGGCAGGAAAGCTGTACAGGATCCACAAAAGGATGATTTTTCCTTTTCTGAGTATGAAAAGGTGCATTTTGCTTTGTTCTTTAGATATAACTGTGTTCATAGCAGAACAAACTTTATTTTTTAACAATTTACTGATAGTTTTTAATTTTATTTTTTATGAAAAG
CTTGGAGTTACTATTCCCACTCGGCGTTTTGATGATGCTGTTGCAAGTGTTCCCATAAAAAAACGGAAATACACACTGTTCCAGCTCCCTTCTCCTCCACCTGCATCCCCAACACCAGCTTCTCCATTGCGATCATCTTCTCCAGAGCTTGCTGCCTCTTTAGTTCGTTCTGAAGGATTACCATCTGCAAAGCAAGAGCA
GGGGGAACAGCAAGTGCTAGAAGGTATGGATGTTACAGGAGAATCTCTCCAGGAGAAATACACAGACGTTGTTGGTCAGTCCTTGAATGAAAATACCTTGAAAATTCCTAGTTCAGTAGGTTATTTTGCACAGGATATTGGCATTGCTAATTTGTCAGGAAATTCAAGGTTCCCAATGTCTGCTTCTATAGGTAAGCCAG
GGAGCAACAGCTTGGATGACAGAGTATCCAAAGTGGAATTAGTGGAATTCAAGAATCCTAAGCCTACACCTGAAAGATTGAATGATGGTGATATTGGTAGTCAAGATAATAAACAAGAAGTTTATGCATGTGTGGACACTCTGAAACAGGAAGAAGATTTTAGGAGACGAGATCATGTGCTAGAGAGTGATCTGCTAGCC
ACTGCAGAGAATAAAATCCATGTAATCGAGGGAATTTCAGATTGTAATAATCTGAGCAGAACAGATCACATTACATGCATGGAGACAGAGGAATCAATGGAGTTAGCCCTATGCAGTAACTCTATTGCTCTAGGATCTAGAAATCATTTAGAGACAACTGGCTGTAGTAAAATGTCTTCTGTAGCTGGGGAGAGTTCTGC
TGCAGGTTTACAGGAAGATGGAGAGAAACAAGAGAAAGGAATGCTTTTGAGGTTGGATTCTGGCTATTTCAATGATGATAGGTCGCATTGGGACTTGAATACCCCTATGGATTCTTGGGAAAAGCAACTAGAAGTTGTAAATACAAATTCTAAACCTGAATTTTTACCTGCAGACACTGCAAACAATAAGAACTCAGAAC
ATTTGGATGGGATTCAGGTACACATATTGGCTTCAGAAGCTAAGCATGATAGTGGAAAGTCTGAACAGGATATGCTGAGCAAGGTTTTACAGGCAGACCAAGATAATACTGCACTGAATTTCTCAGAAAGCTTAGCTTTTGGACATGATTCAGAACTTGATACTTCTCTCAGACTTCAGCCCGATGCCATTCTCAATCAG
TGTAAGATAAACCTTGCATATATCTGTAAGAGTGGTTCACTATCAGAGGAATCGGTAGCTGAAAGGGAACTAAACCTCTCCATAGCACCTTCAGGAGGAGCTTGTGAATCAGTTATTAATGTTTCTTGTGTTGATGCCCAAGATGATAGACATTTCATAGAGAAACCTTCAGATTGTCTTTTGGCAACAGACCGTTCCTT
GCAAAGTGACAGTCAATTAGATAATACTCCGATTGATGACAATGTTGATATGTTTGATAAAACCGAGTCTTCTGCTGATTGTAAGCAAGATAAGGAACCTGCAGAAGATAATTTTGAAGCAACTGATGGCACTAGTTACAAGTGCAACTCAAGTGGTCCTGAAACAACTTATGAAAATCCTGGTCTTATGCAAAAAAATT
CCCCATCTTCTCCAGCCAGGAATCAACATCTTATCAAAACTGTCAATGATGACAGCATTGTTGATGATGCAAATGCTGCAACTATCTGTGCCGTTAATGCTTGTGTGGAGGATATTACCACCATGAAGGAAAATCCTAGAAGCCCCGAGCTTGGATTGGACAAGCAATCTGTGGAGGATGCCACAGAAATTGCCTATGGT
GGTGACTCTGAGTTTGATGGTTACGATGATGAATCTGAACTTGTTTCGGATACTGAGAATATTTCGGATACTGAAAAAGAGATTGTTGAACAGGCTGAAAATGAGCATCAAGTTGAAGAAGGAGAATACAGAGAAACAGGGCTTCATACAGGGGAAGAACTGGAAGATGAACATGTTGATTATGGGGATTCTGATGGTAG
AGATGCTGATGATCTCGGCATGGATCTAGATGACAGAGGAAAAGATGTGGAACATGAAAAAAACTGGGATGATGACCAGCAGTCTGAAATGGAAGAAAAATATGATACTGATAGTAATCATGAGGAACAGGACTCACAATTTGATGGAGTTGTTCAAGTCAGTCAAGCTGGGGAAGAAGACACTAAATGTGAATCAGTGG
AAGCTGAGCTAGATATTCAACACGCTACTGAGAAACAGGAACACAAAGGTGATGGCAGTCTATCTCAAACCAATGAAGTATTAGGTGAAGACATAAGTTTGGAGGTTGAACTGAAATGCCACCAAGATCAAAATAAGGGTGTTGTTGCAAAGTCAAGGGACGGGAGGTTCTTTACACGGCAGAAATCATCTGGATGGGAT
CAATTGCCTGATGGATTTGAAAGTGCAGCAGAAGCACTGAAGGCCGTCCATGGTACATTCATTAAGCGGGGGCGAGGTGCTGCTTTGATCTCTGGGGGACGCATAGGGCCTATGTCTTCCAGGGGTGCATCATCACGAAGGGATGGTGTATTTGGGGAAAGAATGGATGTTGATGATTCTATGCACAGAAAAGAGGGTTT
TTTTATCCGGGGAAGGGATGGAAGCCTTCCTACAAGTCCAAGTTTTGCTTCAAGGAAACCAACCAGGGGCAGAATTGTCGGAAGGGGCGGTGGACCTTCTCGTGGAATGCATAATATGGGAAGGGCTGATCCCTGGGCAGATGGTGGAACTCGGCATTTGGGTCCACATAGGCATCATTCTCCTGATTATTATGGTGATC
ATGTTGGGTTTGGACCACATGTTTCTGCAAATGCCGCTGCTATGTCTGCTGCCAAGGTTGAAAGTAGTGGCTTTGTTGTTTCCATGGATGGTACCGTAACAAAAGTTTTGAGGGGAGGAATCCGAGGTCGAAGAGGTCGTGGTACATTGATGGGGAGGGGAGTCCCCATGGGCATTGAGGAGAGCAGTGACTTTGGATTG
CAGATGAGCATGGGACCTGGTGGCCTGATGTCAGATACAGGGATGAATGCGAGCAGGGCTAGAGCCATTGGTATAGGTCCTGACAGAATAAGTGCTGGTAATCATGTAGGGCGAGAAAGATATCGAGAGCCATCATTTGGAAATAATAGGTGGGATCATTCAATAGGGGATTCTCCTCACAGGATGGACCACCAATTGAG
AGAAAGAAATAGGAGTTTTACACCCCCTCCAGGTAGGAGATTGACTCGTATGTTGCGTTCACACACCCAGTCTCGTTCAAGATCAGGAACTCGCTCTCCACGGCCGAAGTCCTCTCCTAGGGGAAGCACTGGTGCTGGAATAGGCCGTGGACCAGCACCAAGAAGGCGTAGCAGGACTCCTCCTACCCTAAGGTCAGAAT
CTAGAATGGACAGGCCAAAGTCCCCTTTATTTCAGAATGTTGGTTCCTTTGAACACAGGATGTTTCTATCCTCTTCTAGAACTCGGCGATCGCCTCCACAATCATCAAAATGGTCATATGACAGAAGGGATACAAACCATTTCAAGGACTCTGAATACAGGAGATCTTTCCGTGCTGGGAGTCCATCAAAGAGAATGTCA
CCCCGAGGTGTTCATGAATCTGGGTTGATGGGCTCACCTGGTAGGTTAAAGCATAGTGAGTACCGGGGCACAGTATATACTTCTAGAACAGCTGAATTTGGCAGTGACAGTAGACGCTTCAAGCGTGATGAAAGTGAAGATGTTAGACTGAAGCAGAGTGATAATTCTGGGAGATCAATTGAGGTCGGTAGCACAGATAT
TAGACGATATAGACGTCAGGATGA
>TRINITY_DN121618_c0_g1_i8 from sample A3 / Example unspliced isoform:TGCTAGCCCCCCCAAGGTCCATAATTAAAACGACAGAGAAACCCTAACTTTATTGCTAACCCCAAAGAATATTTCTTTAAAAGGTAAAGACAAGCTTCTTGGAGCATCATGCTCCAACATTGACCCTCTTAAACCCTCACCACTGTCGGCAGTAGCGTCTATACGCCCAAGCCAAAAATCCAGCCCCGGAACGTGGTCCG
GAACCAGGTTCGGCATTAGAGGGCGAATGAATAAAACCCCAAAGAGCAGAGGTGAAAATAAGAAACATCAGAAGAATATGAATGGACGACCGCGACGAGGGTTTGAAGGATACCGAAGGAAATCTTGACGGCAGGTGGAAATGAACTGCTCTCTGGCTTAAACAGGCAGCAATCTGTACTGGGTTGCCTTTAGATTTCGA
AGAGAATTCGACCCAGATTCAAAGAAATCCGATAAACCATATATATGGAAGTTTCAGGTTCTACAGGTCCTGTTAATGGTGGGCAGCGGAGCGGGGTTTGATCAGAGGAACAGTGGTAATAAATGCCGTGAGGATATGGTTTCCATGGCGGTGTTGGGGACGGTTTCACTTAAGAAATGGACCGAAGTCAGCGGGAAAAA
CCCAAGCTTTTCAGTTGAATGCAGGCTGGGCTCGCAGGTCACACGTTCGCAGAAGTTCCGGTGCGGCGACAGGGGATTCGAGGACCCAGATGCGAGGTTAATGGCTCTGCGTTTTGGGTTTTTGACGGAAGGGCTGGTGGCCTTCAGGAGCTTTCTGTTCGAGGGTTCGAAGAAGCGAGGGCTTGTGTATATTTGTGTGA
GGAGGAATCGTGCATGCGGTCTGCGGTTTGCTGATGTTGTTATCAGGGTGGATAGTGGGGTTACGAGGTCGATTTCGTTCAAGGGCTCGGGATCCAGCGATGGGGATGACGATGCTGTTGAGAGGGCTTTCTCGTTTGTTACAGGGTCAGGGATTGGGAATTGGGTGCGATGGTTTATGGGACAGCAGGTCGAGGGTCCG
AGTTTACAACAAGGAGGAGGGGTTTGTGGGCACTGTGGGCAGCGGAAGCAGCAACACCAGCATCAAGAGGAGTCTGATGACCCCCAGTGCGAGCAACAGATATCTGAAGATTACATGTGTTTTTCCTGTAAAAAGATAGAAAGGGATGAGATTACTATTATCAGGATGGATGAGCAGGGAGAATTCAAGGCGGTTCCTGT
TGAAGAGATCTGCACAGATAATAAAAGTGCAGGGTTATCAGTGAGTGAGTCTGTTTGCAGTGTCTGTGGATGTGAGGACAACGAAAATTTTGAGATAATGATGCATCCTTGCAGCTGCAACGGAGGTTCAGTTCTTGCCCATCCCTCCTGTGTTTCTGCATCCCTAGCAACTTCCAGGACAGGGAGCAATCAGGCACCAG
CTTCATGTAAGGTCTGCGGTGGTAGAGGCACCATAGGCTCACCAGAAGAAGGGACTTCAAAGCTACTCATGCTAAATCCAAACTTCAGAAGAAACACTACTAATGCCACTCAAAAGAAGGGAGTAAAACGAGTTTCTAGTGACCTAACCAATGGGGGAGTGGGTAAAGCCGATCTCTCTGAGATCCAGCCTCTGAAAACA
TTTAATGAAGAGAGTGGCAGGAAAGCTGTACAGGATCCACAAAAGGATGATTTTTCCTTTTCTGAGTATGAAAAGCTTGGAGTTACTATTCCCACTCGGCGTTTTGATGATGCTGTTGCAAGTGTTCCCATAAAAAAACGGAAATACACACTGTTCCAGCTCCCTTCTCCTCCACCTGCATCCCCAACACCAGCTTCTCC
ATTGCGATCATCTTCTCCAGAGCTTGCTGCCTCTTTAGTTCGTTCTGAAGGATTACCATCTGCAAAGCAAGAGCAGGGGGAACAGCAAGTGCTAGAAGGTAAGCCAGGGAGCAACAGCTTGGATGACAGAGTATCCAAAGTGGAATTAGTGGAATTCAAGAATCCTAAGCCTACACCTGAAAGATTGAATGATGGTGATA
TTGGTAGTCAAGATAATAAACAAGAAGTTTATGCATGTGTGGACACTCTGAAACAGGAAGAAGATTTTAGGAGACGAGATCATGTGCTAGAGAGTGATCTGCTAGCCACTGCAGAGAATAAAATCCATGTAATCGAGGGAATTTCAGATTGTAATAATCTGAGCAGAACAGATCACATTACATGCATGGAGACAGAGGAA
TCAATGGAGTTAGCCCTATGCAGTAACTCTATTGCTCTAGGATCTAGAAATCATTTAGAGACAACTGGCTGTAGTAAAATGTCTTCTGTAGCTGGGGAGAGTTCTGCTGCAGGTTTACAGGAAGATGGAGAGAAACAAGAGAAAGGAATGCTTTTGAGGTTGGATTCTGGCTATTTCAATGATGATAGGTCGCATTGGGA
CTTGAATACCCCTATGGATTCTTGGGAAAAGCAACTAGAAGTTGTAAATACAAATTCTAAACCTGAATTTTTACCTGCAGACACTGCAAACAATAAGAACTCAGAACATTTGGATGGGATTCAGGTACACATATTGGCTTCAGAAGCTAAGCATGATAGTGGAAAGTCTGAACAGGATATGCTGAGCAAGGTTTTACAGG
CAGACCAAGATAATACTGCACTGAATTTCTCAGAAAGCTTAGCTTTTGGACATGATTCAGAACTTGATACTTCTCTCAGACTTCAGCCCGATGCCATTCTCAATCAGTGTAAGATAAACCTTGCATATATCTGTAAGAGTGGTTCACTATCAGAGGAATCGGTAGCTGAAAGGGAACTAAACCTCTCCATAGCACCTTCA
GGAGGAGCTTGTGAATCAGTTATTAATGTTTCTTGTGTTGATGCCCAAGATGATAGACATTTCATAGAGAAACCTTCAGATTGTCTTTTGGCAACAGACCGTTCCTTGCAAAGTGACAGTCAATTAGATAATACTCCGATTGATGACAATGTTGATATGTTTGATAAAACCGAGTCTTCTGCTGATTGTAAGCAAGATAA
GGAACCTGCAGAAGATAATTTTGAAGCAACTGATGGCACTAGTTACAAGTGCAACTCAAGTGGTCCTGAAACAACTTATGAAAATCCTGGTCTTATGCAAAAAAATTCCCCATCTTCTCCAGCCAGGAATCAACATCTTATCAAAACTGTCAATGATGACAGCATTGTTGATGATGCAAATGCTGCAACTATCTGTGCCG
TTAATGCTTGTGTGGAGGATATTACCACCATGAAGGAAAATCCTAGAAGCCCCGAGCTTGGATTGGACAAGCAATCTGTGGAGGATGCCACAGAAATTGCCTATGGTGGTGACTCTGAGTTTGATGGTTACGATGATGAATCTGAACTTGTTTCGGATACTGAGAATATTTCGGATACTGAAAAAGAGATTGTTGAACAG
GCTGAAAATGAGCATCAAGTTGAAGAAGGAGAATACAGAGAAACAGGGCTTCATACAGGGGAAGAACTGGAAGATGAACATGTTGATTATGGGGATTCTGATGGTAGAGATGCTGATGATCTCGGCATGGATCTAGATGACAGAGGAAAAGATGTGGAACATGAAAAAAACTGGGATGATGACCAGCAGTCTGAAATGGA
AGAAAAATATGATACTGATAGTAATCATGAGGAACAGGACTCACAATTTGATGGAGTTGTTCAAGTCAGTCAAGCTGGGGAAGAAGACACTAAATGTGAATCAGTGGAAGCTGAGCTAGATATTCAACACGCTACTGAGAAACAGGAACACAAAGGTGATGGCAGTCTATCTCAAACCAATGAAGTATTAGGTGAAGACA
TAAGTTTGGAGGTTGAACTGAAATGCCACCAAGATCAAAATAAGGGTGTTGTTGCAAAGTCAAGGGACGGGAGGTTCTTTACACGGCAGAAATCATCTGGATGGGATCAATTGCCTGATGGATTTGAAAGTGCAGCAGAAGCACTGAAGGCCGTCCATGGTACATTCATTAAGCGGGGGCGAGGTGCTGCTTTGATCTCT
GGGGGACGCATAGGGCCTATGTCTTCCAGGGGTGCATCATCACGAAGGGATGGTGTATTTGGGGAAAGAATGGATGTTGATGATTCTATGCACAGAAAAGAGGGTTTTTTTATCCGGGGAAGgtgggtatttctgtcatttctgtttttgcatagtgttttgaattttcctagtgccattctttttctgccctatactgc
ttgaatactatttccttaaggctaacggattagtttcttgtggtcaaaatagGGATGGAAGCCTTCCTACAAGTCCAAGTTTTGCTTCAAGGAAACCAACCAGGGGCAGAATTGTCGGAAGGGGCGGTGGACCTTCTCGTGGAATGCATAATATGGGAAGGGCTGATCCCTGGGCAGATGGTGGAACTCGGCATTTGGGT
CCACATAGGCATCATTCTCCTGATTATTATGGTGATCATGTTGGGTTTGGACCACATGTTTCTGCAAATGCCGCTGCTATGTCTGCTGCCAAGGTTGAAAGTAGTGGCTTTGTTGTTTCCATGGATGGTACCGTAACAAAAGTTTTGAGGGGAGGAATCCGAGGTCGAAGAGGTCGTGGTACATTGATGGGGAGGGGAGT
CCCCATGGGCATTGAGGAGAGCAGTGACTTTGGATTGCAGATGAGCATGGGACCTGGTGGCCTGATGTCAGATACAGGGATGAATGCGAGCAGGGCTAGAGCCATTGGTATAGGTCCTGACAGAATAAGTGCTGGTAATCATGTAGGGCGAGAAAGATATCGAGAGCCATCATTTGGAAATAATAGGTGGGATCATTCAA
TAGGGGATTCTCCTCACAGGATGGACCACCAATTGAGAGAAAGAAATAGGAGTTTTACACCCCCTCCAGGTAGGAGATTGACTCGTATGTTGCGTTCACACACCCAGTCTCGTTCAAGATCAGGAACTCGCTCTCCACGGCCGAAGTCCTCTCCTAGGGGAAGCACTGGTGCTGGAATAGGCCGTGGACCAGCACCAAGA
AGGCGTAGCAGGACTCCTCCTACCCTAAGGTCAGAATCTAGAATGGACAGGCCAAAGTCCCCTTTATTTCAGAATGTTGGTTCCTTTGAACACAGGATGTTTCTATCCTCTTCTAGAACTCGGCGATCGCCTCCACAATCATCAAAATGGTCATATGACAGAAGGGATACAAACCATTTCAAGGACTCTGAATACAGGAG
ATCTTTCCGTGCTGGGAGTCCATCAAAGAGAATGTCACCCCGAGGTGTTCATGAATCTGGGTTGATGGGCTCACCTGGTAGGTTAAAGCATAGTGAGTACCGGGGCACAGTATATACTTCTAGAACAGCTGAATTTGGCAGTGACAGTAGACGCTTCAAGCGTGATGAAAGTGAAGATGTTAGACTGAAGCAGAGTGATA
ATTCTGGGAGATCAATTGAGGTCGGTAGCACAGATATTAGACGATATAGACGTCAGGATGATGAAGGTGACTGTCAAGCTCGTAACTCTCGTGCTAAGGATGCTGGGATCTCAAGGGAGCAGGGCAGGGGGGACCATAATAGCAGGTTATAGACACATACGGGCTGTGAAAAAGTATTGTCTTTGGAGAGGAAGACTGGA
AGTGGCAGTTTCGTGTATTTGGAATTGCTTGAAGGTTGTGATGACATCAAATCAAGTGGAAGAGGCATTCCTGACAATTGTGTTAATCATTGCTTACCTTCACACTGTTGTATTTAGGTCTTTTTTAATGCGAGCCTGTTGCAGTCATCAGAAAACTTCCCTTTGGATTTTTGTGCAGGGAACATATCTGAAGTAGGAAG
TTCTCTTATTGGGTTGTAAAACCCAGAGTATGTAAAGTCTATGGTAGTTCAGTTCAAACATTACTTGTCATAGAAGAGATAAAATCCCAAGCACTTGCTATCACTAGTATCTGCTGTACCATGTCAATTTCCTGGGACTCTTAGGTGAATTCCCTTTTTATAAGCTGGCATTCACTATGTAGTACCAAGTCATGTTCTAT
GCTTTTAAGCTGACCCTCGTAAAAATTCTTAGTTACCGGTAAAGATCCATTTTCTTGGTCTGAAATGTCACAGATCAGGTTCTGATTGTGCTGCTTGAATATTTCACACTACTGGGCAAAAAATGTCATGCGTCTTCCTACAGATCTTCTATAAATGAGCTGCAACAAGTAGCTCCAGTCAATTTTGTTTTCCTCTACCA
CACTTTCTCTTACGTGCACTCCCATATCTCGAGATTAAGTGGTTGTATTCATTATTAATTGTTAGAAATGTTTCTTGCTATCTATATAGGATCCTCGTTTTTTTTTTCAAATAATTGGCTTCAAAATCTTTGTATATCGTGACATGGAAGGTCGGGCAATCTTCATGGACTGTGCCTGATTCTAAAGGAGTGTAGATATG
TTAATTGCCACTCCATGTTAGTGAACAGTCAAATTTTAAATGCATATTGAGAAAATAATATTCTGAAATTATAGGAGTTGCGCTTGCACTCCTAGAGTCTGTCACTACTGATTGTACTTTTGAGTCCCATTGACCTAACGTTTTGGTCGTTTGTG
Intron 4 GTATGGATGT ... GCTTCTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.43 | 15 | 28 | 47 |
| A2 | 78.82 | 9 | 42 | 25 |
| A3 | 57.8 | 23 | 17 | 46 |
| A4 | 58.18 | 23 | 21 | 43 |
| A5 | 57.89 | 8 | 12 | 10 |
| A6 | 71.43 | 1 | 4 | 1 |
| A7 | 47.37 | 5 | 0 | 9 |
| A8 | 33.33 | 2 | 1 | 1 |
| A9 | 42.86 | 2 | 3 | 0 |
| A10 | 33.33 | 5 | 1 | 4 |
>TRINITY_DN128102_c1_g1_i5 from sample A1 / Example spliced isoformGAGAAACCCTAACTTTATTGCTAACCCCAAAGAATATTTCTTTAAAAGGTAAAGACAAGCTTCTTGGAGCATCATGCTCCAACATTGACCCTCTTAAACCCTCACCACTGTCGGCAGTAGCGTCTATACGCCCAAGCCAAAAATCCAGCCCCGGAACGTGGTCCGGAACCAGGTTCGGCATTAGAGGGCGAATGAATAAA
ACCCCAAAGAGCAGAGGTGAAAATAAGAAACATCAGAAGAATATGAATGGACGACCGCGACGAGGGTTTGAAGGATACCGAAGGAAATCTTGACGGCAGGTGGAAATGAACTGCTCTCTGGCTTAAACAGGCAGCAATCTGTACTGGGTTGCCTTTAGATTTCGAAGAGAATTCGACCCATATTCAAAGAAATCCGATAA
ACCATATATATGGAAGTTTCAGGTTCTACAGGTCCTGTTAATGGTGGGCAGCGGAGCGGGGTTTGATCAGAGGAACAGTGGTAATAAATGCCGTGAGGAGATGGTTTCCATGGCGGTGTTGGGGACGGTTTCACTTAAGAAATGGACCGAAGTCAGCGGGAAAAACCCAAGCTTTTCAGTTGAATGCAGGCTGGGCTCGC
AGGTCACACGTTCGCAGAAGTTCCGGTGCGGCGACAGGGGATTCGAGGACCCAGATGCGAGGTTAATGGCTCTGCGTTTTGGGTTTTTGACGGAAGGGCTGGTGGCCTTCAGGAGCTTTCTGTTCGAGGGTTCGAAGAAGCGAGGGCTTGTGTATATTTGTGTGAGGAGGAATCGTGCATGCGGTCTGCGGTTTGCTGAT
GTTGTTATCAGGGTGGATAGTGGGGTTACGAGGTCGATTTCGTTCAAGGGCTCGGGATCCAGCGATGGGGATGACGATGCTGTTGAGAGGGCTTTCTCGTTTGTTACAGGGTCAGGGATTGGGAATTGGGTGCGATGGTTTATGGGACAGCAGGTCGAGGGTCCGAGTTTACAACAAGGAGGAGGGGTTTGTGGGCACTG
TGGGCAGCGGAAGCAGCAACACCAGCATCAAGAGGAGTCTGATGACCCCCAGTGCGAGCAACAGATATCTGAAGATTACATGTGTTTTTCCTGTAAAAAGATAGAAAGGGATGAGATTACTATTATCAGGATGGATGAGCAGGGAGAATTCAAGGCGGTTCCTGTTGAAGAGATCTGCACAGATAATAAAAGTGCAGGGT
TATCAGTGAGTGAGTCTGTTTGCAGTGTCTGTGGATGTGAGGACAACGAAAATTTTGAGATAATGATGCATCCTTGCAGCTGCAACGGAGGTTCAGTTCTTGCCCATCCCTCCTGTGTTTCTGCATCCCTAGCAACTTCCAGGACAGGGAGCAATCAGGCACCAGCTTCATGTAAGGTCTGCGGTGGTAGAGGCACCATA
GGCTCACCAGAAGAAGGGACTTCAAAGCTACTCATGCTAAATCCAAACTTCAGAAGAAACACTACTAATGCCACTCAAAAGAAGGGAGTAAAACGAGTTTCTAGTGACCTAACCAATGGGGGATTGGGTAAAGCCGATCTCTCTGAGATCCAGCCTCTGAAAACATTTAATGAAGAGAGTGGCAGGAAAGCTGTACAGGA
TCCACAAAAGGATGATTTTTCCTTTTCTGAGTATGAAAAGCTTGGAGTTACTATTCCCACTCGGCGTTTTGATGATGCTGTTGCAAGTGTTCCCATAAAAAAACGGAAATACACACTGTTCCAGCTCCCTTCTCCTCCACCTGCATCCCCAACACCAGCTTCTCCATTGCGATCATCTTCTCCAGAGCTTGCTGCCTCTT
TAGTTCGTTCTGAAGGATTACCATCTGCAAAGCAAGAGCAGGGGGAACAGCAAGTGCTAGAAGGTAAGCCAGGGAGCAACAGCTTGGATGACAGAGTATCCAAAGTGGAATTAGTGGAATTCAAGAATCCTAAGCCTACACCTGAAAGATTGAATGATGGTGATATTGGTAGTCAAGATAATAAACAAGAAGTTTATGCA
TGTGTGGACACTCTGAAACAGGAAGAAGATTTTAGGAGACGAGATCATGTGCTAGAGAGTGATCTGCTAGCCACTGCAGAGAATAAAATCCATGTAATCGAGGGAATTTCAGATTGTAATAATCTGAGCAGAACAGATCACATTACATGCATGGAGACAGAGGAATCAATGGAGTTAGCCCTATGCAGTAACTCTATTGC
TCTAGGATCTAGAAATCATTTAGAGACAACTGGCTGTAGTAAAATGTCTTCTGTAGCTGGGGAGAGTTCTGCTGCAGGTTTACAGGAAGATGGAGAGAAACAAGAGAAAGGAATGCTTTTGAGGTTGGATTCTGGCTATTTCAATGATGATAGGTCGCATTGGGACTTGAATACCCCTATGGATTCTTGGGAAAAGCAAC
TAGAAGTTGTAAATACAAATTCTAAACCTGAATTTTTACCTGCAGACACTGCAAACAATAAGAACTCAGAACATTTGGATGGGATTCAGGTACACATATTGGCTTCAGAAGCTAAGCATGATAGTGGAAAGTCTGAACAGGATATGCTGAGCAAGGTTTTACAGGCAGACCAAGATAATACTGCACTGAATTTCTCAGAA
AGCTTAGCTTTTGGACATGATTCAGAACTTGATACTTCTCTCAGACTTCAGCCCGATGCCATTCTCAATCAGTGTAAGATAAACCTTGCATATATCTGTAAGAGTGGTTCACTATCAGAGGAATCGGTAGCTGAAAGGGAACTAAACCTCTCCATAGCACCTTCAGGAGGAGCTTGTGAATCAGTTATTAATGTTTCTTG
TGTTGATGCCCAAGATGATAGACATTTCATAGAGAAACCTTCAGATTGTCTTTTGGCAACAGACCGTTCCTTGCAAAGTGACAGTCAATTAGATAATACTCCGATTGATGACAATGTTGATATGTTTGATAAAACCGAGTCTTCTGCTGATTGTAAGCAAGATAAGGAACCTGCAGAAGATAATTTTGAAGCAACTGATG
GCACTAGTTACAAGTGCAACTCAAGTGGTCCTGAAACAACTTATGAAAATCCTGGTCTTATGCAAAAAAATTCCCCATCTTCTCCAGCCAGGAATCAACATCTTATCAAAACTGTCAATGATGACAGCATTGTTGATGATGCAAATGCTGCAACTATCTGTGCCGTTAATGCTTGTGTGGAGGATATTACCACCATGAAG
GAAAATCCTAGAAGCCCCGAGCTTGGATTGGACAAGCAATCTGTGGAGGATGCCACAGAAATTGCCTATGGTGGTGACTCTGAGTTTGATGGTTACGATGATGAATCTGAACTTGTTTCGGATACTGAGAATATTTCGGATACTGAAAAAGAGATTGTTGAACAGGCTGAAAATGAGCATCAAGTTGAAGAAGGAGAATA
CAGAGAAACAGGGCTTCATACAGGGGAAGAACTGGAAGATGAACATGTTGATTATGGGGATTCTGATGGTAGAGATGCTGATGATCTCGGCATGGATCTAGATGACAGAGGAAAAGATGTGGAACATGAAAAAAACTGGGATGATGACCAGCAGTCTGAAATGGAAGAAAAATATGATACTGATAGTAATCATGAGGAAC
AGGACTCACAATTTGATGGAGTTGTTCAAGTCAGTCAAGCTGGGGAAGAAGACACTAAATGTGAATCAGTGGAAGCTGAGCTAGATATTCAACACGCTACTGAGAAACAGGAACACAAAGGTGATGGCAGTCTATCTCAAACCAATGAAGTATTAGGTGAAGACATAAGTTTGGAGGTTGAACTGAAATGCCACCAAGAT
CAAAATAAGGGTGTTGTTGCAAAGTCAAGGGACGGGAGGTTCTTTACACGGCAGAAATCATCTGGATGGGATCAATTGCCTGATGGATTTGAAAGTGCAGCAGAAGCACTGAAGGCCGTCCATGGTACATTCATTAAGCGGGGGCGAGGTGCTGCTTTGATCTCTGGGGGACGCATAGGGCCTATGTCTTCCAGGGGTGC
ATCATCACGAAGGGATGGTGTATTTGGGGAAAGAATGGATGTTGATGATTCTATGCACAGAAAAGAGGGTTTTTTTATCCGGGGAAGGGATGGAAGCCTTCCTACAAGTCCAAGTTTTGCTTCAAGGAAACCAACCAGGGGCAGAATTGTCGGAAGGGGCGGTGGACCTTCTCGTGGAATGCATAATATGGGAAGGGCTG
ATCCCTGGGCAGATGGTGGAACTCGGCATTTGGGTCCACATAGGCATCATTCTCCTGATTATTATGGTGATCATGTTGGGTTTGGACCACATGTTTCTGCAAATGCCGCTGCTATGTCTGCTGCCAAGGTTGAAAGTAGTGGCTTTGTTGTTTCCATGGATGGTACCGTAACAAAAGTTTTGAGGGGAGGAATCCGAGGT
CGAAGAGGTCGTGGTACATTGATGGGGAGGGGAGTCCCCATGGGCATTGAGGAGAGCAGTGACTTTGGATTGCAGATGAGCATGGGACCTGGTGGCCTGATGTCAGATACAGGGATGAATGCGAGCAGGGCTAGAGCCATTGGTATAGGTCCTGACAGAATAAGTGCTGGTAATCATGTAGGGCGAGAAAGATATCGAGA
GCCATCATTTGGAAATAATAGGTGGGATCATTCAATAGGGGATTCTCCTCACAGGATGGACCACCAATTGAGAGAAAGAAATAGGAGTTTTACACCCCCTCCAGGTAGGAGATTGACTCGTATGTTGCGTTCACACACCCAGTCTCGTTCAAGATCAGGAACTCGCTCTCCACGGCCGAAGTCCTCTCCTAGGGGAAGCA
CTGGTGCTGGAATAGGCCGTGGACCAGCACCAAGAAGGCGTAGCAGGACTCCTCCTACCCTAAGGTCAGAATCTAGAATGGACAGGCCAAAGTCCCCTTTATTTCAGAATGTTGGTTCCTTTGAACACAGGATGTTTCTATCCTCTTCTAGAACTCGGCGATCGCCTCCACAATCATCAAAATGGTCATATGACAGAAGG
GATACAAACCATTTCAAGGACTCTGAATACAGGAGATCTTTCCGTGCTGGGAGTCCATCAAAGAGAATGTCACCCCGAGGTGTTCATGAATCTGGGTTGATGGGCTCACCTGGTAGGTTAAAGCATAGTGAGTACCGGGGCACAGTATATACTTCTAGAACAGCTGAATTTGGCAGTGACAGTAGACGCTTCAAGCGTGA
TGAAAGTGAAGATGTTAGACTGAAGCAGAGTGATAATTCTGGGAGATCAATTGAGGTCGGTAGCACAGATATTAGACGATATAGACGTCAGGATGATGAAGGTGACTGTCAAGCTCGTAACTCTCGTGCTAAGGATGCTGGGATCTCAAGGGAGCAGGGCAGGGGGGACCATAATAGCAGGTTATAGACACATACGGGCT
GTGAAAAAGTATTGTCTTTGGAGAGGAAGACTGGAAGTGGCAGTTTCGTGTATTTGGAATTGCTTGAAGGTTGTGATGACATCAAATCAAGTGGAAGAGGCATTCCTGACAATTGTGTTAATCATTGCTTACCTTCACACTGTTGTATTTAGGTCTTTTTTAATGCGAGCCTGTTGCAGTCATCAGAAAACTTCCCTTTG
GATTTTTGTGCAGGGAACATATCTGAAGTAGGAAGTTCTCTTATTGGGTTGTAAAACCCAGAGTATGTAAAGTCTATGGTAGTTCAGTTCAAACATTACTTGTCATAGAAGAGATAAAATCCCAAGCACTTGCTATCACTAGTATCTGCTGTACCATGTCAATTTCCTGGGACTCTTAGGTGAATTCCCTTTTTATAAGC
TGGCATTCACTATGTAGTACCAAGTCATGTTCTATGCTTTTAAGCTGACCCTCGTAAAAATTCTTAGTTACCGGTAAAGATCCATTTTCTTGGTCTGAAATGTCACAGATCAGGTTCTGATTGTGCTGCTTGAATATTTCACACTACTGGGCAAAAAATGTCATGCGTCTTCCTACAGATCTTCTATAAATGAGCTGCAA
CAAGTAGCTCCAGTCAATTTTGTTTTCCTCTACCACACTTTCTCTTACGTGCACTCCCATATCTCGAGATTAAGTGGTTGTATTCATTATTAATTGTTAGAAATGTTTCTTGCTATCTATATAGGATCCTCGTTTTTTTTTCAAATAATTGGCTTCAAAATCTTTGTATATCGTGACATGGAAGGTCGGGCAATCTTCAT
GGACTGTGCCTGATTCTAAAG
>TRINITY_DN128102_c1_g1_i2 from sample A1 / Example unspliced isoform:GAGAAACCCTAACTTTATTGCTAACCCCAAAGAATATTTCTTTAAAAGGTAAAGACAAGCTTCTTGGAGCATCATGCTCCAACATTGACCCTCTTAAACCCTCACCACTGTCGGCAGTAGCGTCTATACGCCCAAGCCAAAAATCCAGCCCCGGAACGTGGTCCGGAACCAGGTTCGGCATTAGAGGGCGAATGAATAAA
ACCCCAAAGAGCAGAGGTGAAAATAAGAAACATCAGAAGAATATGAATGGACGACCGCGACGAGGGTTTGAAGGATACCGAAGGAAATCTTGACGGCAGGTGGAAATGAACTGCTCTCTGGCTTAAACAGGCAGCAATCTGTACTGGGTTGCCTTTAGATTTCGAAGAGAATTCGACCCATATTCAAAGAAATCCGATAA
ACCATATATATGGAAGTTTCAGGTTCTACAGGTCCTGTTAATGGTGGGCAGCGGAGCGGGGTTTGATCAGAGGAACAGTGGTAATAAATGCCGTGAGGAGATGGTTTCCATGGCGGTGTTGGGGACGGTTTCACTTAAGAAATGGACCGAAGTCAGCGGGAAAAACCCAAGCTTTTCAGTTGAATGCAGGCTGGGCTCGC
AGGTCACACGTTCGCAGAAGTTCCGGTGCGGCGACAGGGGATTCGAGGACCCAGATGCGAGGTTAATGGCTCTGCGTTTTGGGTTTTTGACGGAAGGGCTGGTGGCCTTCAGGAGCTTTCTGTTCGAGGGTTCGAAGAAGCGAGGGCTTGTGTATATTTGTGTGAGGAGGAATCGTGCATGCGGTCTGCGGTTTGCTGAT
GTTGTTATCAGGGTGGATAGTGGGGTTACGAGGTCGATTTCGTTCAAGGGCTCGGGATCCAGCGATGGGGATGACGATGCTGTTGAGAGGGCTTTCTCGTTTGTTACAGGGTCAGGGATTGGGAATTGGGTGCGATGGTTTATGGGACAGCAGGTCGAGGGTCCGAGTTTACAACAAGGAGGAGGGGTTTGTGGGCACTG
TGGGCAGCGGAAGCAGCAACACCAGCATCAAGAGGAGTCTGATGACCCCCAGTGCGAGCAACAGATATCTGAAGATTACATGTGTTTTTCCTGTAAAAAGATAGAAAGGGATGAGATTACTATTATCAGGATGGATGAGCAGGGAGAATTCAAGGCGGTTCCTGTTGAAGAGATCTGCACAGATAATAAAAGTGCAGGGT
TATCAGTGAGTGAGTCTGTTTGCAGTGTCTGTGGATGTGAGGACAACGAAAATTTTGAGATAATGATGCATCCTTGCAGCTGCAACGGAGGTTCAGTTCTTGCCCATCCCTCCTGTGTTTCTGCATCCCTAGCAACTTCCAGGACAGGGAGCAATCAGGCACCAGCTTCATGTAAGGTCTGCGGTGGTAGAGGCACCATA
GGCTCACCAGAAGAAGGGACTTCAAAGCTACTCATGCTAAATCCAAACTTCAGAAGAAACACTACTAATGCCACTCAAAAGAAGGGAGTAAAACGAGTTTCTAGTGACCTAACCAATGGGGGATTGGGTAAAGCCGATCTCTCTGAGATCCAGCCTCTGAAAACATTTAATGAAGAGAGTGGCAGGAAAGCTGTACAGGA
TCCACAAAAGGATGATTTTTCCTTTTCTGAGTATGAAAAGCTTGGAGTTACTATTCCCACTCGGCGTTTTGATGATGCTGTTGCAAGTGTTCCCATAAAAAAACGGAAATACACACTGTTCCAGCTCCCTTCTCCTCCACCTGCATCCCCAACACCAGCTTCTCCATTGCGATCATCTTCTCCAGAGCTTGCTGCCTCTT
TAGTTCGTTCTGAAGGATTACCATCTGCAAAGCAAGAGCAGGGGGAACAGCAAGTGCTAGAAGgtatggatgttacaggagaatctctccaggagaaatacacagacgttgttggtcagtccttgaatgaaaataccttgaaaattcctagttcagtaggttattttgcacaggatattggcattgctaatttgtcagga
aattcaaggttcccaatgtctgcttctatagGTAAGCCAGGGAGCAACAGCTTGGATGACAGAGTATCCAAAGTGGAATTAGTGGAATTCAAGAATCCTAAGCCTACACCTGAAAGATTGAATGATGGTGATATTGGTAGTCAAGATAATAAACAAGAAGTTTATGCATGTGTGGACACTCTGAAACAGGAAGAAGATTT
TAGGAGACGAGATCATGTGCTAGAGAGTGATCTGCTAGCCACTGCAGAGAATAAAATCCATGTAATCGAGGGAATTTCAGATTGTAATAATCTGAGCAGAACAGATCACATTACATGCATGGAGACAGAGGAATCAATGGAGTTAGCCCTATGCAGTAACTCTATTGCTCTAGGATCTAGAAATCATTTAGAGACAACTG
GCTGTAGTAAAATGTCTTCTGTAGCTGGGGAGAGTTCTGCTGCAGGTTTACAGGAAGATGGAGAGAAACAAGAGAAAGGAATGCTTTTGAGGTTGGATTCTGGCTATTTCAATGATGATAGGTCGCATTGGGACTTGAATACCCCTATGGATTCTTGGGAAAAGCAACTAGAAGTTGTAAATACAAATTCTAAACCTGAA
TTTTTACCTGCAGACACTGCAAACAATAAGAACTCAGAACATTTGGATGGGATTCAGGTACACATATTGGCTTCAGAAGCTAAGCATGATAGTGGAAAGTCTGAACAGGATATGCTGAGCAAGGTTTTACAGGCAGACCAAGATAATACTGCACTGAATTTCTCAGAAAGCTTAGCTTTTGGACATGATTCAGAACTTGA
TACTTCTCTCAGACTTCAGCCCGATGCCATTCTCAATCAGTGTAAGATAAACCTTGCATATATCTGTAAGAGTGGTTCACTATCAGAGGAATCGGTAGCTGAAAGGGAACTAAACCTCTCCATAGCACCTTCAGGAGGAGCTTGTGAATCAGTTATTAATGTTTCTTGTGTTGATGCCCAAGATGATAGACATTTCATAG
AGAAACCTTCAGATTGTCTTTTGGCAACAGACCGTTCCTTGCAAAGTGACAGTCAATTAGATAATACTCCGATTGATGACAATGTTGATATGTTTGATAAAACCGAGTCTTCTGCTGATTGTAAGCAAGATAAGGAACCTGCAGAAGATAATTTTGAAGCAACTGATGGCACTAGTTACAAGTGCAACTCAAGTGGTCCT
GAAACAACTTATGAAAATCCTGGTCTTATGCAAAAAAATTCCCCATCTTCTCCAGCCAGGAATCAACATCTTATCAAAACTGTCAATGATGACAGCATTGTTGATGATGCAAATGCTGCAACTATCTGTGCCGTTAATGCTTGTGTGGAGGATATTACCACCATGAAGGAAAATCCTAGAAGCCCCGAGCTTGGATTGGA
CAAGCAATCTGTGGAGGATGCCACAGAAATTGCCTATGGTGGTGACTCTGAGTTTGATGGTTACGATGATGAATCTGAACTTGTTTCGGATACTGAGAATATTTCGGATACTGAAAAAGAGATTGTTGAACAGGCTGAAAATGAGCATCAAGTTGAAGAAGGAGAATACAGAGAAACAGGGCTTCATACAGGGGAAGAAC
TGGAAGATGAACATGTTGATTATGGGGATTCTGATGGTAGAGATGCTGATGATCTCGGCATGGATCTAGATGACAGAGGAAAAGATGTGGAACATGAAAAAAACTGGGATGATGACCAGCAGTCTGAAATGGAAGAAAAATATGATACTGATAGTAATCATGAGGAACAGGACTCACAATTTGATGGAGTTGTTCAAGTC
AGTCAAGCTGGGGAAGAAGACACTAAATGTGAATCAGTGGAAGCTGAGCTAGATATTCAACACGCTACTGAGAAACAGGAACACAAAGGTGATGGCAGTCTATCTCAAACCAATGAAGTATTAGGTGAAGACATAAGTTTGGAGGTTGAACTGAAATGCCACCAAGATCAAAATAAGGGTGTTGTTGCAAAGTCAAGGGA
CGGGAGGTTCTTTACACGGCAGAAATCATCTGGATGGGATCAATTGCCTGATGGATTTGAAAGTGCAGCAGAAGCACTGAAGGCCGTCCATGGTACATTCATTAAGCGGGGGCGAGGTGCTGCTTTGATCTCTGGGGGACGCATAGGGCCTATGTCTTCCAGGGGTGCATCATCACGAAGGGATGGTGTATTTGGGGAAA
GAATGGATGTTGATGATTCTATGCACAGAAAAGAGGGTTTTTTTATCCGGGGAAGGGATGGAAGCCTTCCTACAAGTCCAAGTTTTGCTTCAAGGAAACCAACCAGGGGCAGAATTGTCGGAAGGGGCGGTGGACCTTCTCGTGGAATGCATAATATGGGAAGGGCTGATCCCTGGGCAGATGGTGGAACTCGGCATTTG
GGTCCACATAGGCATCATTCTCCTGATTATTATGGTGATCATGTTGGGTTTGGACCACATGTTTCTGCAAATGCCGCTGCTATGTCTGCTGCCAAGGTTGAAAGTAGTGGCTTTGTTGTTTCCATGGATGGTACCGTAACAAAAGTTTTGAGGGGAGGAATCCGAGGTCGAAGAGGTCGTGGTACATTGATGGGGAGGGG
AGTCCCCATGGGCATTGAGGAGAGCAGTGACTTTGGATTGCAGATGAGCATGGGACCTGGTGGCCTGATGTCAGATACAGGGATGAATGCGAGCAGGGCTAGAGCCATTGGTATAGGTCCTGACAGAATAAGTGCTGGTAATCATGTAGGGCGAGAAAGATATCGAGAGCCATCATTTGGAAATAATAGGTGGGATCATT
CAATAGGGGATTCTCCTCACAGGATGGACCACCAATTGAGAGAAAGAAATAGGAGTTTTACACCCCCTCCAGGTAGGAGATTGACTCGTATGTTGCGTTCACACACCCAGTCTCGTTCAAGATCAGGAACTCGCTCTCCACGGCCGAAGTCCTCTCCTAGGGGAAGCACCAAGAAGGCGTAGCAGGACTCCTCCTACCCT
AAGGTCAGAATCTAGAATGGACAGGCCAAAGTCCCCTTTATTTCAGAATGTTGGTTCCTTTGAACACAGGATGTTTCTATCCTCTTCTAGAACTCGGCGATCGCCTCCACAATCATCAAAATGGTCATATGACAGAAGGGATACAAACCATTTCAAGGACTCTGAATACAGGAGATCTTTCCGTGCTGGGAGTCCATCAA
AGAGAATGTCACCCCGAGGTGTTCATGAATCTGGGTTGATGGGCTCACCTGGTAGGTTAAAGCATAGTGAGTACCGGGGCACAGTATATACTTCTAGAACAGCTGAATTTGGCAGTGACAGTAGACGCTTCAAGCGTGATGAAAGTGAAGATGTTAGACTGAAGCAGAGTGATAATTCTGGGAGATCAATTGAGGTCGGT
AGCACAGATATTAGACGATATAGACGTCAGGATGATGAAGGTGACTGTCAAGCTCGTAACTCTCGTGCTAAGGATGCTGGGATCTCAAGGGAGCAGGGCAGGGGGGACCATAATAGCAGGTTATAGACACATACGGGCTGTGAAAAAGTATTGTCTTTGGAGAGGAAGACTGGAAGTGGCAGTTTCGTGTATTTGGAATT
GCTTGAAGGTTGTGATGACATCAAATCAAGTGGAAGAGGCATTCCTGACAATTGTGTTAATCATTGCTTACCTTCACACTGTTGTATTTAGGTCTTTTTTAATGCGAGCCTGTTGCAGTCATCAGAAAACTTCCCTTTGGATTTTTGTGCAGGGAACATATCTGAAGTAGGAAGTTCTCTTATTGGGTTGTAAAACCCAG
AGTATGTAAAGTCTATGGTAGTTCAGTTCAAACATTACTTGTCATAGAAGAGATAAAATCCCAAGCACTTGCTATCACTAGTATCTGCTGTACCATGTCAATTTCCTGGGACTCTTAGGTGAATTCCCTTTTTATAAGCTGGCATTCACTATGTAGTACCAAGTCATGTTCTATGCTTTTAAGCTGACCCTCGTAAAAAT
TCTTAGTTACCGGTAAAGATCCATTTTCTTGGTCTGAAATGTCACAGATCAGGTTCTGATTGTGCTGCTTGAATATTTCACACTACTGGGCAAAAAATGTCATGCGTCTTCCTACAGATCTTCTATAAATGAGCTGCAACAAGTAGCTCCAGTCAATTTTGTTTTCCTCTACCACACTTTCTCTTACGTGCACTCCCATA
TCTCGAGATTAAGTGGTTGTATTCATTATTAATTGTTAGAAATGTTTCTTGCTATCTATATAGGATCCTCGTTTTTTTTTCAAATAATTGGCTTCAAAATCTTTGTATATCGTGACATGGAAGGTCGGGCAATCTTCATGGACTGTGCCTGATTCTAAAG