sp|Q9STX0|WRKY7_ARATH ----> Probable WRKY transcription factor 7


Intron 1 GTGAGTTTCG ... GTATTGGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A158.0136.31545
A258.0241.1350
A353.4546847
A458.2250.41064
A547.3728.9423
A655.48152.332169
A752.1201.737195
A856.0390.38101
A954201.327208
A1052.64168.124165



>TRINITY_DN96743_c0_g1_i2 from sample A3 / Example spliced isoform
CTGAGATTTTGACTCTGGGGTTTGAAGTTCAAGTAAATGGGGAAATTTAATCGGCTGCAAGAAGATAAGGCACGGGCTTCCGTTCGTTGTGGCTTGTTTATGCGGAGGGATGAATTCCGGTGGATTTGCCGAGAATTGCAGGGTATTTTGGCCGGAGACTCGCTGAAGATTCAAGAAGTCCCCAATGTAATTTGTTCCGT
TTCTTTACTTTGAGTCTTTAAATTTGCATTAATGGCTGAATATGGGGATTTGAAAGGGAGAATATCGTATTCATATGCTTGTTCATATTTATACAGTCTGTTGTTTGTATTTCTTGGATTTATTTTTTGATGGGTGTGTGTGATTCTTGAGATTTAGCGCCGAATAGAACGGATTCTGATCTTGGGGATTCGGATTATAG
AGTCGTCAAACACGGTTGTTCAGGGGCTTTCTTGAAATGTCCATGCTCGATTCTGTCTGTTGGGTTTGGGTTCTGTCTGTTTGTTTTAGGGTTAAAAAGATTTAAAAAATGGAGGTTCCTCTCGAGTGAATAGACATGGCCGTGGAGATGTTGGACTTCAGGAATTTCATGGAACGCGACGTGCACCAGGCGGCTTCTGC
AACGCTGGAGAGCGTGCAGAATCTGATACAATTGATATCCCGACAGCGGGAAATGCAAGAAGAGGGGGAGAGCCGTTGTGGGTCTGCTGCAGAAATGGCTGCAAATCGATTCAAAAAGGCCGTTTCAATGCTCGGAACCACAACCGGCCATGCTCGCTTCAGAAAAGCCCCGCCGGGATCTTCAGTTCCGGTTCCTCCTA
AGCTTTGCCCCTCTTTCGAAACTGGGCATGCGAATATGTCTGCTTCTTCTTCTTCTTCTCAGGAAGCCTTGAAGGATTCCGAAGGTTTTATCTCCCCTGCGCCATTGAACAATAACACCTTGTTCCGTCCCACCCCGCTGCACGTCCAGGTCCCTGCACAGAACCCAGTCATGGATTCAACCCCTCAGCAGCACAAGATT
CCATTATTGCCTATGAATTCAGATTACAGCTTCATGGGTTCCAGGTCCTTCAAAGAGTCCGTCATCTCGTCCTCGCCATTATCCTCCACTAACTCCTTCATGTCCTCACTCACAGCATCGGATCCCTGTGATAAAAGTTCTGTGCTGGTTCGATCTCTTAGCCCAACAGCCGTAGGTCGGCCCCCATTATCGTCCTGCAA
GAAAGCCTGCATCCATGGAAAGCCCGACGATCTCTCAGGAAAGTGTAACACAACAAGCGGACGCTGCCACTGCTCTTCAAAACGCAAGAAGTCCAGAGTGAAAAGAACTGTCAGAGTACCTGCAATCAGTGCAAAATTGGCAGACATCCCAGTTGATGAATTCTCATGGAGAAAATATGGGCAGAAGCCCATTAAGGGCT
CTCCACATCCAAGAGGCTATTACAAATGCAGCACAGTGAGGGGGTGTCCTGCAAGAAAGCACGTAGAACGCGCCCCTGACGATCCAAACGTATTGATTGTAACCTATGAGGGTGAACACAGCCATTCTCATTCTGTATCTGAAAACACAGGCCTGGTACTGGATTCGTGAAACCCATATACACAGAAAGGCATTAATCTA
GCTTTATATTACGCTACAGAATACGCCATTATTCCAAGGGGATGGAGATTATTTATAGGGCAATTTCCATGGGCGTTGCATGCCCACTACAGCGTTTTGCAATTTGGTACGAGTCAAGATTAATGCAAAATCCATAAAACGGAGGCCTTTCTACGTAAAAAAACCATCCTAATTTTTGTAGAGACTCGACGAATATATCC
ATTTATTTCTCTGCTACAACATGTTCTGTACATCTTTTGTGAAGTCTATATAATTTCATTGCAGTTCATGGTTTCTGTTTTGTGTGATGTTTTATCAGGGAAATTAGAGTTTTAAAGAGAATTTTTATATGTGAATGCCATTATTCTGGTATGATTCCGTTATACGGTTTTGAAATTTCTATCTGATGCGCTTTGACGGG
AATTTGACAAAGAGTTCCATAATTCACTGGTGTGGTGTGAACCATATTTGACAGATG


>TRINITY_DN96743_c0_g1_i3 from sample A3 / Example unspliced isoform:
CTGAGATTTTGACTCTGGGGTTTGAAGTTCAAGTAAATGGGGAAATTTAATCGGCTGCAAGAAGATAAGGCACGGGCTTCCGTTCGTTGTGGCTTGTTTATGCGGAGGGATGAATTCCGGTGGATTTGCCGAGAATTGCAGGGTATTTTGGCCGGAGACTCGCTGAAGATTCAAGAAGTCCCCAATGTAATTTGTTCCGT
TTCTTTACTTTGAGTCTTTAAATTTGCATTAATGGCTGAATATGGGGATTTGAAAGGGAGAATATCGTATTCATATGCTTGTTCATATTTATACAGTCTGTTGTTTGTATTTCTTGGATTTATTTTTTGATGGGTGTGTGTGATTCTTGAGATTTAGCGCCGAATAGAACGGATTCTGATCTTGGGGATTCGGATTATAG
AGTCGTCAAACACGGTTGTTCAGGGGCTTTCTTGAAATGTCCATGCTCGATTCTGTCTGTTGGGTTTGGGTTCTGTCTGTTTGTTTTAGGGTTAAAAAGATTTAAAAAATGGAGGTTCCTCgtgagtttcgaacctttatctcctgctaggtttaaggtcttgattccggggttctcgttcttgtttttttctccccttt
tcttaccaatccgtttctgtgtattggcag
TCGAGTGAATAGACATGGCCGTGGAGATGTTGGACTTCAGGAATTTCATGGAACGCGACGTGCACCAGGCGGCTTCTGCAACGCTGGAGAGCGTGCAGAATCTGATACAATTGATATCCCGACAGCGGGAAATGCAAGAAGAGGGGGAGAGCCGTTGTGGGTCTGCTGCA
GAAATGGCTGCAAATCGATTCAAAAAGGCCGTTTCAATGCTCGGAACCACAACCGGCCATGCTCGCTTCAGAAAAGCCCCGCCGGGATCTTCAGTTCCGGTTCCTCCTAAGCTTTGCCCCTCTTTCGAAACTGGGCATGCGAATATGTCTGCTTCTTCTTCTTCTTCTCAGGAAGCCTTGAAGGATTCCGAAGGTTTTAT
CTCCCCTGCGCCATTGAACAATAACACCTTGTTCCGTCCCACCCCGCTGCACGTCCAGGTCCCTGCACAGAACCCAGTCATGGATTCAACCCCTCAGCAGCACAAGATTCCATTATTGCCTATGAATTCAGATTACAGCTTCATGGGTTCCAGGTCCTTCAAAGAGTCCGTCATCTCGTCCTCGCCATTATCCTCCACTA
ACTCCTTCATGTCCTCACTCACAGCATCGGATCCCTGTGATAAAAGTTCTGTGCTGGTTCGATCTCTTAGCCCAACAGCCGTAGGTCGGCCCCCATTATCGTCCTGCAAGAAAGCCTGCATCCATGGAAAGCCCGACGATCTCTCAGGAAAGTGTAACACAACAAGCGGACGCTGCCACTGCTCTTCAAAACGCAAGAAG
TCCAGAGTGAAAAGAACTGTCAGAGTACCTGCAATCAGTGCAAAATTGGCAGACATCCCAGTTGATGAATTCTCATGGAGAAAATATGGGCAGAAGCCCATTAAGGGCTCTCCACATCCAAGAGGCTATTACAAATGCAGCACAGTGAGGGGGTGTCCTGCAAGAAAGCACGTAGAACGCGCCCCTGACGATCCAAACGT
ATTGATTGTAACCTATGAGGGTGAACACAGCCATTCTCATTCTGTATCTGAAAACACAGGCCTGGTACTGGATTCGTGAAACCCATATACACAGAAAGGCATTAATCTAGCTTTATATTACGCTACAGAATACGCCATTATTCCAAGGGGATGGAGATTATTTATAGGGCAATTTCCATGGGCGTTGCATGCCCACTACA
GCGTTTTGCAATTTGGTACGAGTCAAGATTAATGCAAAATCCATAAAACGGAGGCCTTTCTACGTAAAAAAACCATCCTAATTTTTGTAGAGACTCGACGAATATATCCATTTATTTCTCTGCTACAACATGTTCTGTACATCTTTTGTGAAGTCTATATAATTTCATTGCAGTTCATGGTTTCTGTTTTGTGTGATGTT
TTATCAGGGAAATTAGAGTTTTAAAGAGAATTTTTATATGTGAATGCCATTATTCTGGTATGATTCCGTTATACGGTTTTGAAATTTCTATCTGATGCGCTTTGACGGGAATTTGACAAAGAGTTCCATAATTCACTGGTGTGGTGTGAACCATATTTGACAGATG




Intron 2 GTTGTTCAGG ... GTATTGGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A15045845
A251.5547950
A347531847
A452.03591764
A542.59311223
A648.4218052169
A746.6522364195
A847.8711021101
A946.8523650208
A1046.6118923165



>TRINITY_DN41966_c0_g1_i1 from sample A10 / Example spliced isoform
TGAAGATTCAAGAAGTCCCCAATGTAATTTGTTCCGTTTCTTTACTTTGAGTCTTTAAATTTGCATTAATGGCTGAATATGGGGATTTGAAAGGGAGAATATCGTATTCATATGCTTGTTCATATTTATACAGTCTGTTGTTTGTATTTCTTGGATTTATTTTTTGATGGGTGTGTGTGATTCTTGAGATTTAGCGCCGA
ATAGAACGGATTCTGATCTTGGGGATTCGGATTATAGAGTCGTCAAACACGTCGAGTGAATAGACATGGCCGTGGAGATGTTGGACTTCAGGAATTTCATGGAACGCGACGTGCACCAGGCGGCTTCTGCAACGCTGGAGAGCGTGCAGAATCTGATACAATTGATATCCCGACAGCGGGAAATGCAAGAAGAGGGGGAG
AGCCGTTGTGGGTCTGCTGCAGAAATGGCTGCAAATCGATTCAAAAAGGCCGTTTCAATGCTCGGAACCACAACCGGCCATGCTCGCTTCAGAAAAGCCCCGCCGGGATCTTCAGTTCCGGTTCCTCCTAAGCTTTGCCCCTCTTTCGAAACTGGGCATGCGAATATGTCTGCTTCTTCTTCTTCTTCTCAGGAAGCCTT
GAAGGATTCCGAAGGTTTTATCTCCCCTGCGCCATTGAACAATAACACCTTGTTCCGTCCCACCCCGCTGCACGTCCAGGTCCCTGCACAGAACCCAGTCATGGATTCAACCCCTCAGCAGCACAAGATTCCATTATTGCCTATGAATTCAGATTACAGCTTCATGGGTTCCAGGTCCTTCAAAGAGTCCGTCATCTCGT
CCTCGCCATTATCCTCCACTAACTCCTTCATGTCCTCACTCACAGCATCGGATCCCTGTGATAAAAGTTCTGTGCTGGTTCGATCTCTTAGCCCAACAGCCGTAGGTCGGCCCCCATTATCGTCCTGCAAGAAAGCCTGCATCCATGGAAAGCCCGACGATCTCTCAGGAAAGTGTAACACAACAAGCGGACGCTGCCAC
TGCTCTTCAAAACGCAAG


>TRINITY_DN41966_c0_g1_i3 from sample A10 / Example unspliced isoform:
TGAAGATTCAAGAAGTCCCCAATGTAATTTGTTCCGTTTCTTTACTTTGAGTCTTTAAATTTGCATTAATGGCTGAATATGGGGATTTGAAAGGGAGAATATCGTATTCATATGCTTGTTCATATTTATACAGTCTGTTGTTTGTATTTCTTGGATTTATTTTTTGATGGGTGTGTGTGATTCTTGAGATTTAGCGCCGA
ATAGAACGGATTCTGATCTTGGGGATTCGGATTATAGAGTCGTCAAACACGgttgttcaggggctttcttgaaatgtccatgctcgattctgtctgttgggtttgggttctgtctgtttgttttagggttaaaaagatttaaaaaatggaggttcctcgtgagtttcgaacctttatctcctgctaggtttaaggtcttg
attccggggttctcgttcttgtttttttctccccttttcttaccaatccgtttctgtgtattggcag
TCGAGTGAATAGACATGGCCGTGGAGATGTTGGACTTCAGGAATTTCATGGAACGCGACGTGCACCAGGCGGCTTCTGCAACGCTGGAGAGCGTGCAGAATCTGATACAATTGATATCCCGACAGCGGGAAAT
GCAAGAAGAGGGGGAGAGCCGTTGTGGGTCTGCTGCAGAAATGGCTGCAAATCGATTCAAAAAGGCCGTTTCAATGCTCGGAACCACAACCGGCCATGCTCGCTTCAGAAAAGCCCCGCCGGGATCTTCAGTTCCGGTTCCTCCTAAGCTTTGCCCCTCTTTCGAAACTGGGCATGCGAATATGTCTGCTTCTTCTTCTT
CTTCTCAGGAAGCCTTGAAGGATTCCGAAGGTTTTATCTCCCCTGCGCCATTGAACAATAACACCTTGTTCCGTCCCACCCCGCTGCACGTCCAGGTCCCTGCACAGAACCCAGTCATGGATTCAACCCCTCAGCAGCACAAGATTCCATTATTGCCTATGAATTCAGATTACAGCTTCATGGGTTCCAGGTCCTTCAAA
GAGTCCGTCATCTCGTCCTCGCCATTATCCTCCACTAACTCCTTCATGTCCTCACTCACAGCATCGGATCCCTGTGATAAAAGTTCTGTGCTGGTTCGATCTCTTAGCCCAACAGCCGTAGGTCGGCCCCCATTATCGTCCTGCAAGAAAGCCTGCATCCATGGAAAGCCCGACGATCTCTCAGGAAAGTGTAACACAAC
AAGCGGACGCTGCCACTGCTCTTCAAAACGCAAG




Intron 3 GTAATTTGTT ... GTATTGGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A123.94143545
A222.121765.750
A319.6719210.747
A427.83166564
A517.561085.323
A620.8464226.7169
A719.4480833195
A820.5739014101
A92083241208
A1016.4284037.3165



>TRINITY_DN96743_c0_g1_i1 from sample A3 / Example spliced isoform
CTGAGATTTTGACTCTGGGGTTTGAAGTTCAAGTAAATGGGGAAATTTAATCGGCTGCAAGAAGATAAGGCACGGGCTTCCGTTCGTTGTGGCTTGTTTATGCGGAGGGATGAATTCCGGTGGATTTGCCGAGAATTGCAGGGTATTTTGGCCGGAGACTCGCTGAAGATTCAAGAAGTCCCCAATTCGAGTGAATAGAC
ATGGCCGTGGAGATGTTGGACTTCAGGAATTTCATGGAACGCGACGTGCACCAGGCGGCTTCTGCAACGCTGGAGAGCGTGCAGAATCTGATACAATTGATATCCCGACAGCGGGAAATGCAAGAAGAGGGGGAGAGCCGTTGTGGGTCTGCTGCAGAAATGGCTGCAAATCGATTCAAAAAGGCCGTTTCAATGCTCGG
AACCACAACCGGCCATGCTCGCTTCAGAAAAGCCCCGCCGGGATCTTCAGTTCCGGTTCCTCCTAAGCTTTGCCCCTCTTTCGAAACTGGGCATGCGAATATGTCTGCTTCTTCTTCTTCTTCTCAGGAAGCCTTGAAGGATTCCGAAGGTTTTATCTCCCCTGCGCCATTGAACAATAACACCTTGTTCCGTCCCACCC
CGCTGCACGTCCAGGTCCCTGCACAGAACCCAGTCATGGATTCAACCCCTCAGCAGCACAAGATTCCATTATTGCCTATGAATTCAGATTACAGCTTCATGGGTTCCAGGTCCTTCAAAGAGTCCGTCATCTCGTCCTCGCCATTATCCTCCACTAACTCCTTCATGTCCTCACTCACAGCATCGGATCCCTGTGATAAA
AGTTCTGTGCTGGTTCGATCTCTTAGCCCAACAGCCGTAGGTCGGCCCCCATTATCGTCCTGCAAGAAAGCCTGCATCCATGGAAAGCCCGACGATCTCTCAGGAAAGTGTAACACAACAAGCGGACGCTGCCACTGCTCTTCAAAACGCAAGAAGTCCAGAGTGAAAAGAACTGTCAGAGTACCTGCAATCAGTGCAAA
ATTGGCAGACATCCCAGTTGATGAATTCTCATGGAGAAAATATGGGCAGAAGCCCATTAAGGGCTCTCCACATCCAAGAGGCTATTACAAATGCAGCACAGTGAGGGGGTGTCCTGCAAGAAAGCACGTAGAACGCGCCCCTGACGATCCAAACGTATTGATTGTAACCTATGAGGGTGAACACAGCCATTCTCATTCTG
TATCTGAAAACACAGGCCTGGTACTGGATTCGTGAAACCCATATACACAGAAAGGCATTAATCTAGCTTTATATTACGCTACAGAATACGCCATTATTCCAAGGGGATGGAGATTATTTATAGGGCAATTTCCATGGGCGTTGCATGCCCACTACAGCGTTTTGCAATTTGGTACGAGTCAAGATTAATGCAAAATCCAT
AAAACGGAGGCCTTTCTACGTAAAAAAACCATCCTAATTTTTGTAGAGACTCGACGAATATATCCATTTATTTCTCTGCTACAACATGTTCTGTACATCTTTTGTGAAGTCTATATAATTTCATTGCAGTTCATGGTTTCTGTTTTGTGTGATGTTTTATCAGGGAAATTAGAGTTTTAAAGAGAATTTTTATATGTGAA
TGCCATTATTCTGGTATGATTCCGTTATACGGTTTTGAAATTTCTATCTGATGCGCTTTGACGGGAATTTGACAAAGAGTTCCATAATTCACTGGTGTGGTGTGAACCATATTTGACAGATG


>TRINITY_DN96743_c0_g1_i3 from sample A3 / Example unspliced isoform:
CTGAGATTTTGACTCTGGGGTTTGAAGTTCAAGTAAATGGGGAAATTTAATCGGCTGCAAGAAGATAAGGCACGGGCTTCCGTTCGTTGTGGCTTGTTTATGCGGAGGGATGAATTCCGGTGGATTTGCCGAGAATTGCAGGGTATTTTGGCCGGAGACTCGCTGAAGATTCAAGAAGTCCCCAATgtaatttgttccgt
ttctttactttgagtctttaaatttgcattaatggctgaatatggggatttgaaagggagaatatcgtattcatatgcttgttcatatttatacagtctgttgtttgtatttcttggatttattttttgatgggtgtgtgtgattcttgagatttagcgccgaatagaacggattctgatcttggggattcggattatag
agtcgtcaaacacggttgttcaggggctttcttgaaatgtccatgctcgattctgtctgttgggtttgggttctgtctgtttgttttagggttaaaaagatttaaaaaatggaggttcctcgtgagtttcgaacctttatctcctgctaggtttaaggtcttgattccggggttctcgttcttgtttttttctccccttt
tcttaccaatccgtttctgtgtattggcag
TCGAGTGAATAGACATGGCCGTGGAGATGTTGGACTTCAGGAATTTCATGGAACGCGACGTGCACCAGGCGGCTTCTGCAACGCTGGAGAGCGTGCAGAATCTGATACAATTGATATCCCGACAGCGGGAAATGCAAGAAGAGGGGGAGAGCCGTTGTGGGTCTGCTGCA
GAAATGGCTGCAAATCGATTCAAAAAGGCCGTTTCAATGCTCGGAACCACAACCGGCCATGCTCGCTTCAGAAAAGCCCCGCCGGGATCTTCAGTTCCGGTTCCTCCTAAGCTTTGCCCCTCTTTCGAAACTGGGCATGCGAATATGTCTGCTTCTTCTTCTTCTTCTCAGGAAGCCTTGAAGGATTCCGAAGGTTTTAT
CTCCCCTGCGCCATTGAACAATAACACCTTGTTCCGTCCCACCCCGCTGCACGTCCAGGTCCCTGCACAGAACCCAGTCATGGATTCAACCCCTCAGCAGCACAAGATTCCATTATTGCCTATGAATTCAGATTACAGCTTCATGGGTTCCAGGTCCTTCAAAGAGTCCGTCATCTCGTCCTCGCCATTATCCTCCACTA
ACTCCTTCATGTCCTCACTCACAGCATCGGATCCCTGTGATAAAAGTTCTGTGCTGGTTCGATCTCTTAGCCCAACAGCCGTAGGTCGGCCCCCATTATCGTCCTGCAAGAAAGCCTGCATCCATGGAAAGCCCGACGATCTCTCAGGAAAGTGTAACACAACAAGCGGACGCTGCCACTGCTCTTCAAAACGCAAGAAG
TCCAGAGTGAAAAGAACTGTCAGAGTACCTGCAATCAGTGCAAAATTGGCAGACATCCCAGTTGATGAATTCTCATGGAGAAAATATGGGCAGAAGCCCATTAAGGGCTCTCCACATCCAAGAGGCTATTACAAATGCAGCACAGTGAGGGGGTGTCCTGCAAGAAAGCACGTAGAACGCGCCCCTGACGATCCAAACGT
ATTGATTGTAACCTATGAGGGTGAACACAGCCATTCTCATTCTGTATCTGAAAACACAGGCCTGGTACTGGATTCGTGAAACCCATATACACAGAAAGGCATTAATCTAGCTTTATATTACGCTACAGAATACGCCATTATTCCAAGGGGATGGAGATTATTTATAGGGCAATTTCCATGGGCGTTGCATGCCCACTACA
GCGTTTTGCAATTTGGTACGAGTCAAGATTAATGCAAAATCCATAAAACGGAGGCCTTTCTACGTAAAAAAACCATCCTAATTTTTGTAGAGACTCGACGAATATATCCATTTATTTCTCTGCTACAACATGTTCTGTACATCTTTTGTGAAGTCTATATAATTTCATTGCAGTTCATGGTTTCTGTTTTGTGTGATGTT
TTATCAGGGAAATTAGAGTTTTAAAGAGAATTTTTATATGTGAATGCCATTATTCTGGTATGATTCCGTTATACGGTTTTGAAATTTCTATCTGATGCGCTTTGACGGGAATTTGACAAAGAGTTCCATAATTCACTGGTGTGGTGTGAACCATATTTGACAGATG




Intron 4 GTACGAGTCA ... GTTTTATCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A177.2710345
A284.216328
A377.9713465
A496.31260
A5853172
A685.8710563814
A784.36894809
A887.0212684522
A985.749255335
A1086.624227215



>TRINITY_DN40917_c0_g1_i1 from sample A7 / Example spliced isoform
AGTCAACGAATGCGCTGGCAGAGGAACAGATGTTGACCGTCCGATGGAATCCGACGGCCGAGATAAGGGGACTGGTGGAAGAAAACTCTTCTCGCCTTCGGGTGCCTTGCGGGCGCGGCAAAGAAGCCACTGACCGGCCGTAGCCGGCGAGCGACCGGGTACGCCGGGAAGGAATCCAGTCAAATCGTCTGACTTTACTT
AAACCAGCAATTCTGTCGTTAGTGGAGTGACGTGTACGAAGGCGATTGGTGGGATCTTTGACTTAGTAAAGTTGGAATCCTCGGGTTCTGAGATTTTGACTCTGGGGTTTGAAGTTCAAGTAAATGGGGAAATTTAATCGGCTGCAAGAAGATAAGGCACGGGCTTCCGTTCGTTGTGGCTTGTTTATGCGGAGGGATGA
ATTCCGGTGGATTTGCCGAGAATTGCAGGGTATTTTGGCCGGAGACTCGCTGAAGATTCAAGAAGTCCCCAATTCGAGTGAATAGACATGGCCGTGGAGATGTTGGACTTCAGGAATTTCATGGAACGCGACGTGCACCAGGCGGCTTCTGCAACGCTGGAGAGCGTGCAGAATCTGATACAATTGATATCCCGACAGCG
GGAAATGCAAGAAGAGGGGGAGAGCCGTTGTGGGTCTGCTGCAGAAATGGCTGCAAATCGATTCAAAAAGGCCGTTTCAATGCTCGGAACCACAACCGGCCATGCTCGCTTCAGAAAAGCCCCGCCGGGATCTTCAGTTCCGGTTCCTCCTAAGCTTTGCCCCTCTTTCGAAACTGGGCATGCGAATATGTCTGCTTCTT
CTTCTTCTTCTCAGGAAGCCTTGAAGGATTCCGAAGGTTTTATCTCCCCTGCGCCATTGAACAATAACACCTTGTTCCGTCCCACCCCGCTGCACGTCCAGGTCCCTGCACAGAACCCAGTCATGGATTCAACCCCTCAGCAGCACAAGATTCCATTATTGCCTATGAATTCAGATTACAGCTTCATGGGTTCCAGGTCC
TTCAAAGAGTCCGTCATCTCGTCCTCGCCATTATCCTCCACTAACTCCTTCATGTCCTCACTCACAGCATCGGATCCCTGTGATAAAAGTTCTGTGCTGGTTCGATCTCTTAGCCCAACAGCCGTAGGTCGGCCCCCATTATCGTCCTGCAAGAAAGCCTGCATCCATGGAAAGCCCGACGATCTCTCAGGAAAGTGTAA
CACAACAAGCGGACGCTGCCACTGCTCTTCAAAACGCAAGAAGTCCAGAGTGAAAAGAACTGTCAGAGTACCTGCAATCAGTGCAAAATTGGCAGACATCCCAGTTGATGAATTCTCATGGAGAAAATATGGGCAGAAGCCCATTAAGGGCTCTCCACATCCAAGAGGCTATTACAAATGCAGCACAGTGAGGGGGTGTC
CTGCAAGAAAGCACGTAGAACGCGCCCCTGACGATCCAAACGTATTGATTGTAACCTATGAGGGTGAACACAGCCATTCTCATTCTGTATCTGAAAACACAGGCCTGGTACTGGATTCGTGAAACCCATATACACAGAAAGGCATTAATCTAGCTTTATATTACGCTACAGAATACGCCATTATTCCAAGGGGATGGAGA
TTATTTATAGGGCAATTTCCATGGGCGTTGCATGCCCACTACAGCGTTTTGCAATTTGGGAAATTAGAGTTTTAAAGAGAATTTTTATATGTGAATGCCATTATTCTGGTGGGGAACTTTCCGTTAATTGGTGGTCAACCCATTAGAAAGGAATCACCATGCTAGAAAAAAACAACATTTTTGACGTGGCGTACGATTCT
TAAAGATGAGTCTTATCTCTCAGATATAAAGAACGGTGAAAGTGAAAAAAATATTCTTTGGAATTCGACCAAACCCTAATCCAGTTATTTACCATGGTCAAGATTTGAATCGTGGATGAATCGTGGATGATGGTTGTTATTTTCAGTCATGGTTAAAGATGTTTGCAAT


>TRINITY_DN40917_c0_g1_i3 from sample A7 / Example unspliced isoform:
AGTCAACGAATGCGCTGGCAGAGGAACAGATGTTGACCGTCCGATGGAATCCGACGGCCGAGATAAGGGGACTGGTGGAAGAAAACTCTTCTCGCCTTCGGGTGCCTTGCGGGCGCGGCAAAGAAGCCACTGACCGGCCGTAGCCGGCGAGCGACCGGGTACGCCGGGAAGGAATCCAGTCAAATCGTCTGACTTTACTT
AAACCAGCAATTCTGTCGTTAGTGGAGTGACGTGTACGAAGGCGATTGGTGGGATCTTTGACTTAGTAAAGTTGGAATCCTCGGGTTCTGAGATTTTGACTCTGGGGTTTGAAGTTCAAGTAAATGGGGAAATTTAATCGGCTGCAAGAAGATAAGGCACGGGCTTCCGTTCGTTGTGGCTTGTTTATGCGGAGGGATGA
ATTCCGGTGGATTTGCCGAGAATTGCAGGGTATTTTGGCCGGAGACTCGCTGAAGATTCAAGAAGTCCCCAATTCGAGTGAATAGACATGGCCGTGGAGATGTTGGACTTCAGGAATTTCATGGAACGCGACGTGCACCAGGCGGCTTCTGCAACGCTGGAGAGCGTGCAGAATCTGATACAATTGATATCCCGACAGCG
GGAAATGCAAGAAGAGGGGGAGAGCCGTTGTGGGTCTGCTGCAGAAATGGCTGCAAATCGATTCAAAAAGGCCGTTTCAATGCTCGGAACCACAACCGGCCATGCTCGCTTCAGAAAAGCCCCGCCGGGATCTTCAGTTCCGGTTCCTCCTAAGCTTTGCCCCTCTTTCGAAACTGGGCATGCGAATATGTCTGCTTCTT
CTTCTTCTTCTCAGGAAGCCTTGAAGGATTCCGAAGGTTTTATCTCCCCTGCGCCATTGAACAATAACACCTTGTTCCGTCCCACCCCGCTGCACGTCCAGGTCCCTGCACAGAACCCAGTCATGGATTCAACCCCTCAGCAGCACAAGATTCCATTATTGCCTATGAATTCAGATTACAGCTTCATGGGTTCCAGGTCC
TTCAAAGAGTCCGTCATCTCGTCCTCGCCATTATCCTCCACTAACTCCTTCATGTCCTCACTCACAGCATCGGATCCCTGTGATAAAAGTTCTGTGCTGGTTCGATCTCTTAGCCCAACAGCCGTAGGTCGGCCCCCATTATCGTCCTGCAAGAAAGCCTGCATCCATGGAAAGCCCGACGATCTCTCAGGAAAGTGTAA
CACAACAAGCGGACGCTGCCACTGCTCTTCAAAACGCAAGAAGTCCAGAGTGAAAAGAACTGTCAGAGTACCTGCAATCAGTGCAAAATTGGCAGACATCCCAGTTGATGAATTCTCATGGAGAAAATATGGGCAGAAGCCCATTAAGGGCTCTCCACATCCAAGAGGCTATTACAAATGCAGCACAGTGAGGGGGTGTC
CTGCAAGAAAGCACGTAGAACGCGCCCCTGACGATCCAAACGTATTGATTGTAACCTATGAGGGTGAACACAGCCATTCTCATTCTGTATCTGAAAACACAGGCCTGGTACTGGATTCGTGAAACCCATATACACAGAAAGGCATTAATCTAGCTTTATATTACGCTACAGAATACGCCATTATTCCAAGGGGATGGAGA
TTATTTATAGGGCAATTTCCATGGGCGTTGCATGCCCACTACAGCGTTTTGCAATTTGgtacgagtcaagattaatgcaaaatccataaaacggaggcctttctacgtaaaaaaaccatcctaatttttgtagagactcgacgaatatatccatttatttctctgctacaacatgttctgtacatcttttgtgaagtcta
tataatttcattgcagttcatggtttctgttttgtgtgatgttttatcag
GGAAATTAGAGTTTTAAAGAGAATTTTTATATGTGAATGCCATTATTCTGGTATGATTCCGTTATACGGTTTTGAAATTTCTATCTGATGCGCTTTGACGGGAATTTGACAAAGAGTTCCATAATTCACTGGTGTGGTGTGAACCATATT
TGACAGGTGGGGAACTTTCCGTTAATTGGTGGTCAACCCATTAGAAAGGAATCACCATGCTAGAAAAAAACAACATTTTTGACGTGGCGTACGATTCTTAAAGATGAGTCTTATCTCTCAGATATAAAGAACGGTGAAAGTGAAAAAAATATTCTTTGGAATTCGACCAAACCCTAATCCAGTTATTTACCATGGTCAAG
ATTTGAATCGTGGATGAATCGTGGATGATGGTTGTTATTTTCAGTCATGGTTAAAGATGTTTGCAAT




Intron 5 GTCTACTACT ... GATCTTGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A112.9967210
A27.53703
A314.293606
A411.433104
A522.22702
A612.5294042
A712.26272038
A811.31345044
A912.5280040
A1014.81230040



>TRINITY_DN132147_c3_g1_i3 from sample A1 / Example spliced isoform
GGCTGAATATGGGGATTTGAAAGGGAGAATATCGTATTCATATGCTTGTTCATATTTATACAGTCTGTTGTTTGTATTTCTTGGATTTATTTTTTGATGGGTGTGTGTGATTCTTGAGATTTAGCGCCGAATAGAACGGATTCTGATCTTGGGGATTCGGATTATAGAGTCGTCAAACACGGTTGTTCAGGGGCTTTCTT
GAAATGTCCATGCTCGATTCTGTCTGTTGGGTTTGGGTTCTGTCTGTTTGTTTTAGGGTTAAAAAGATTTAAAAAATGGAGGTTCCTCGTGAGTTTCGAACCTTTATCTCCTGCTAGGTTTAAGGTCTTGATTCCGGGGTTCTCGTTCTTGTTTTTTTCTCCCCTTTTCTTACCAATCCGTTTCTGTGTATTGGCAGTCG
AGTGAATAGACATGGCCGTGGAGATGTTGGACTTCAGGAATTTCATGGAACGCGACGTGCACCAGGCGGCTTCTGCAACGCTGGAGAGCGTGCAGAATCTGATACAATTGATATCCCGACAGCGGGAAATGCAAGAAGAGGGGGAGAGCCGTTGTGGGTCTGCTGCAGAAATGGCTGCAAATCGATTCAAAAAGGCCGTT
TCAATGCTCGGAACCACAACCGGCCATGCTCGCTTCAGAAAAGCCCCGCCGGGATCTTCAGTTCCGGTTCCTCCTAAGCTTTGCCCCTCTTTCGAAACTGGGCATGCGAATATGTCTGCTTCTTCTTCTTCTTCTCAGGAAGCCTTGAAGGATTCCGAAGGTTTTATCTCCCCTGCGCCATTGAACAATAACACCTTGTT
CCGTCCCACCCCGCTGCACGTCCAGGTCCCTGCACAGAACCCAGTCATGGATTCAACCCCTCAGCAGCACAAGATTCCATTATTGCCTATGAATTCAGATTACAGCTTCATGGGTTCCAGGTCCTTCAAAGAGTCCGTCATCTCGTCCTCGCCATTATCCTCCACTAACTCCTTCATGTCCTCACTCACAGCATCGGATC
CCTGTGATAAAAGTTCTGTGCTGGTTCGATCTCTTAGCCCAACAGCCGTAGGTCGGCCCCCATTATCGTCCTGCAAGAAAGCCTGCATCCATGGAAAGCCCGACGATCTCTCAGGAAAGTGTAACACAACAAGCGGACGCTGCCACTGCTCTTCAAAACGCAAGAAGTCCAGAGTGAAAAGAACTGTCAGAGTACCTGCA
ATCAGTGCAAAATTGGCAGACATCCCAGTTGATGAATTCTCATGGAGAAAATATGGGCAGAAGCCCATTAAGGGCTCTCCACATCCAAGAGGCTATTACAAATGCAGCACAGTGAGGGGGTGTCCTGCAAGAAAGCACGTAGAACGCGCCCCTGACGATCCAAACGTATTGATTGTAACCTATGAGGGTGAACACAGCCA
TTCTCATTCTGTATCTGAAAACACAGGCCTGGTACTGGATTCGTGAAACCCATATACACAGAAAGGCATTAATCTAGCTTTATATTACGCTACAGAATACGCCATTATTCCAAGGGGATGGAGATTATTTATAGGGCAATTTCCATGGGCGTTGCATGCCCACTACAGCGTTTTGCAATTTGGTACGAGTCAAGATTAAT
GCAAAATCCATAAAACGGAGGCCTTTCTACGTAAAAAAACCATCCTAATTTTTGTAGAGACTCGACGAATATATCCATTTATTTCTCTGCTACAACATGTTCTGTACATCTTTTGTGAAGTCTATATAATTTCATTGCAGTTCAAAAAAAAAAACCATCCTAATTTTTGTAGAGACTCGACGAATATATCCATTTATTTC
TCTGCTACAACATGTTCTGTACATCTTTTGTGAAGTCTATATAATTTCATTGCAGTTCA


>TRINITY_DN132147_c3_g1_i2 from sample A1 / Example unspliced isoform:
ATTAAGGGCTCTCCACATCCAAGgtctactactgttacattctttagtgtatttttggttgtatatactgatactatttatttctgttctcatgattgtctgactggtattttatggcttggatcttgcagAGGCTATTACAAATGCAGCACAGTGAGGGGGTGTCCTGCAAGAAAGCACGTAGAACGCGCCCCTGACGA
TCCAAACGTATTGATTGTAACCTATGAGGGTGAACACAGCCATTCTCATTCTGTATCTGAAAACACAGGCCTGGTACTGGATTCGTGAAACCCATATACACAGAAAGGCATTAATCTAGCTTTATATTACGCTACAGAATACGCCATTATTCCAAGGGGATGGAGATTATTTATAGGGCAATTTCCATGGGCGTTGCATG
CCCACTACAGCGTTTTGCAATTTGGTACGAGTCAAGATTAATGCAAAATCCATAAAACGGAGGCCTTTCTACGTAAAAAAACCATCCTAATTTTTGTAGAGACTCGACGAATATATCCATTTATTTCTCTGCTACAACATGTTCTGTACATCTTTTGTGAAGTCTATATAATTTCATTGCAGTTCAAAAAAAAAAACCAT
CCTAATTTTTGTAGAGACTCGACGAATATATCCATTTATTTCTCTGCTACAACATGTTCTGTACATCTTTTGTGAAGTCTATATAATTTCATTGCAGTTCA




Intron 6 GTATGATTCC ... TATTTGACAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A1100030
A284.62192
A366.67244
A4-1000
A5100020
A689.471413
A782.612910
A881.2531016
A98041814
A1078.952114



>TRINITY_DN40917_c0_g1_i1 from sample A7 / Example spliced isoform
AGTCAACGAATGCGCTGGCAGAGGAACAGATGTTGACCGTCCGATGGAATCCGACGGCCGAGATAAGGGGACTGGTGGAAGAAAACTCTTCTCGCCTTCGGGTGCCTTGCGGGCGCGGCAAAGAAGCCACTGACCGGCCGTAGCCGGCGAGCGACCGGGTACGCCGGGAAGGAATCCAGTCAAATCGTCTGACTTTACTT
AAACCAGCAATTCTGTCGTTAGTGGAGTGACGTGTACGAAGGCGATTGGTGGGATCTTTGACTTAGTAAAGTTGGAATCCTCGGGTTCTGAGATTTTGACTCTGGGGTTTGAAGTTCAAGTAAATGGGGAAATTTAATCGGCTGCAAGAAGATAAGGCACGGGCTTCCGTTCGTTGTGGCTTGTTTATGCGGAGGGATGA
ATTCCGGTGGATTTGCCGAGAATTGCAGGGTATTTTGGCCGGAGACTCGCTGAAGATTCAAGAAGTCCCCAATTCGAGTGAATAGACATGGCCGTGGAGATGTTGGACTTCAGGAATTTCATGGAACGCGACGTGCACCAGGCGGCTTCTGCAACGCTGGAGAGCGTGCAGAATCTGATACAATTGATATCCCGACAGCG
GGAAATGCAAGAAGAGGGGGAGAGCCGTTGTGGGTCTGCTGCAGAAATGGCTGCAAATCGATTCAAAAAGGCCGTTTCAATGCTCGGAACCACAACCGGCCATGCTCGCTTCAGAAAAGCCCCGCCGGGATCTTCAGTTCCGGTTCCTCCTAAGCTTTGCCCCTCTTTCGAAACTGGGCATGCGAATATGTCTGCTTCTT
CTTCTTCTTCTCAGGAAGCCTTGAAGGATTCCGAAGGTTTTATCTCCCCTGCGCCATTGAACAATAACACCTTGTTCCGTCCCACCCCGCTGCACGTCCAGGTCCCTGCACAGAACCCAGTCATGGATTCAACCCCTCAGCAGCACAAGATTCCATTATTGCCTATGAATTCAGATTACAGCTTCATGGGTTCCAGGTCC
TTCAAAGAGTCCGTCATCTCGTCCTCGCCATTATCCTCCACTAACTCCTTCATGTCCTCACTCACAGCATCGGATCCCTGTGATAAAAGTTCTGTGCTGGTTCGATCTCTTAGCCCAACAGCCGTAGGTCGGCCCCCATTATCGTCCTGCAAGAAAGCCTGCATCCATGGAAAGCCCGACGATCTCTCAGGAAAGTGTAA
CACAACAAGCGGACGCTGCCACTGCTCTTCAAAACGCAAGAAGTCCAGAGTGAAAAGAACTGTCAGAGTACCTGCAATCAGTGCAAAATTGGCAGACATCCCAGTTGATGAATTCTCATGGAGAAAATATGGGCAGAAGCCCATTAAGGGCTCTCCACATCCAAGAGGCTATTACAAATGCAGCACAGTGAGGGGGTGTC
CTGCAAGAAAGCACGTAGAACGCGCCCCTGACGATCCAAACGTATTGATTGTAACCTATGAGGGTGAACACAGCCATTCTCATTCTGTATCTGAAAACACAGGCCTGGTACTGGATTCGTGAAACCCATATACACAGAAAGGCATTAATCTAGCTTTATATTACGCTACAGAATACGCCATTATTCCAAGGGGATGGAGA
TTATTTATAGGGCAATTTCCATGGGCGTTGCATGCCCACTACAGCGTTTTGCAATTTGGGAAATTAGAGTTTTAAAGAGAATTTTTATATGTGAATGCCATTATTCTGGTGGGGAACTTTCCGTTAATTGGTGGTCAACCCATTAGAAAGGAATCACCATGCTAGAAAAAAACAACATTTTTGACGTGGCGTACGATTCT
TAAAGATGAGTCTTATCTCTCAGATATAAAGAACGGTGAAAGTGAAAAAAATATTCTTTGGAATTCGACCAAACCCTAATCCAGTTATTTACCATGGTCAAGATTTGAATCGTGGATGAATCGTGGATGATGGTTGTTATTTTCAGTCATGGTTAAAGATGTTTGCAAT


>TRINITY_DN40917_c0_g1_i2 from sample A7 / Example unspliced isoform:
CGTTTCTTTACTTTGAGTCTTTAAATTTGCATTAATGGCTGAATATGGGGATTTGAAAGGGAGAATATCGTATTCATATGCTTGTTCATATTTATACAGTCTGTTGTTTGTATTTCTTGGATTTATTTTTTGATGGGTGTGTGTGATTCTTGAGATTTAGCGCCGAATAGAACGGATTCTGATCTTGGGGATTCGGATTA
TAGAGTCGTCAAACACGGTTGTTCAGGGGCTTTCTTGAAATGTCCATGCTCGATTCTGTCTGTTGGGTTTGGGTTCTGTCTGTTTGTTTTAGGGTTAAAAAGATTTAAAAAATGGAGGTTCCTCTCGAGTGAATAGACATGGCCGTGGAGATGTTGGACTTCAGGAATTTCATGGAACGCGACGTGCACCAGGCGGCTTC
TGCAACGCTGGAGAGCGTGCAGAATCTGATACAATTGATATCCCGACAGCGGGAAATGCAAGAAGAGGGGGAGAGCCGTTGTGGGTCTGCTGCAGAAATGGCTGCAAATCGATTCAAAAAGGCCGTTTCAATGCTCGGAACCACAACCGGCCATGCTCGCTTCAGAAAAGCCCCGCCGGGATCTTCAGTTCCGGTTCCTC
CTAAGCTTTGCCCCTCTTTCGAAACTGGGCATGCGAATATGTCTGCTTCTTCTTCTTCTTCTCAGGAAGCCTTGAAGGATTCCGAAGGTTTTATCTCCCCTGCGCCATTGAACAATAACACCTTGTTCCGTCCCACCCCGCTGCACGTCCAGGTCCCTGCACAGAACCCAGTCATGGATTCAACCCCTCAGCAGCACAAG
ATTCCATTATTGCCTATGAATTCAGATTACAGCTTCATGGGTTCCAGGTCCTTCAAAGAGTCCGTCATCTCGTCCTCGCCATTATCCTCCACTAACTCCTTCATGTCCTCACTCACAGCATCGGATCCCTGTGATAAAAGTTCTGTGCTGGTTCGATCTCTTAGCCCAACAGCCGTAGGTCGGCCCCCATTATCGTCCTG
CAAGAAAGCCTGCATCCATGGAAAGCCCGACGATCTCTCAGGAAAGTGTAACACAACAAGCGGACGCTGCCACTGCTCTTCAAAACGCAAGAAGTCCAGAGTGAAAAGAACTGTCAGAGTACCTGCAATCAGTGCAAAATTGGCAGACATCCCAGTTGATGAATTCTCATGGAGAAAATATGGGCAGAAGCCCATTAAGG
GCTCTCCACATCCAAGAGGCTATTACAAATGCAGCACAGTGAGGGGGTGTCCTGCAAGAAAGCACGTAGAACGCGCCCCTGACGATCCAAACGTATTGATTGTAACCTATGAGGGTGAACACAGCCATTCTCATTCTGTATCTGAAAACACAGGCCTGGTACTGGATTCGTGAAACCCATATACACAGAAAGGCATTAAT
CTAGCTTTATATTACGCTACAGAATACGCCATTATTCCAAGGGGATGGAGATTATTTATAGGGCAATTTCCATGGGCGTTGCATGCCCACTACAGCGTTTTGCAATTTGGTACGAGTCAAGATTAATGCAAAATCCATAAAACGGAGGCCTTTCTACGTAAAAAAACCATCCTAATTTTTGTAGAGACTCGACGAATATA
TCCATTTATTTCTCTGCTACAACATGTTCTGTACATCTTTTGTGAAGTCTATATAATTTCATTGCAGTTCATGGTTTCTGTTTTGTGTGATGTTTTATCAGGGAAATTAGAGTTTTAAAGAGAATTTTTATATGTGAATGCCATTATTCTGgtatgattccgttatacggttttgaaatttctatctgatgcgctttgac
gggaatttgacaaagagttccataattcactggtgtggtgtgaaccatatttgacag
GTGGGGAACTTTCCGTTAATTGGTGGTCAACCCATTAGAAAGGAATCACCATGCTAGAAAAAAACAACATTTTTGACGTGGCGTACGATTCTTAAAGATGAGTCTTATCTCTCAGATATAAAGAACGGTGAAAGTGAAAAAAA
TATTCTTTGGAATTCGACCAAACCCTAATCCAGTTATTTACCATGGTCAAGATTTGAATCGTGGATGAATCGTGGATGATGGTTGTTATTTTCAGTCATGGTTAAAGATGTTTGCAAT